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Lopez-Lorenzo X, Hueting D, Bosshard E, Syrén PO. Degradation of PET microplastic particles to monomers in human serum by PETase. Faraday Discuss 2024; 252:387-402. [PMID: 38864456 DOI: 10.1039/d4fd00014e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2024]
Abstract
More than 8 billion tons of plastic waste has been generated, posing severe environmental consequences and health risks. Due to prolonged exposure, microplastic particles are found in human blood and other bodily fluids. Despite a lack of toxicity studies regarding microplastics, harmful effects for humans seem plausible and cannot be excluded. As small plastic particles readily translocate from the gut to body fluids, enzyme-based treatment of serum could constitute a promising future avenue to clear synthetic polymers and their corresponding oligomers via their degradation into monomers of lower toxicity than the material they originate from. Still, whereas it is known that the enzymatic depolymerization rate of synthetic polymers varies by orders of magnitude depending on the buffer and media composition, the activity of plastic-degrading enzymes in serum was unknown. Here, we report how an engineered PETase, which we show to be generally trans-selective via induced fit docking, can depolymerize two different microplastic-like substrates of the commodity polymer polyethylene terephthalate (PET) into its non-toxic monomer terephthalic acid (TPA) alongside mono(2-hydroxyethyl)terephthalate (MHET) in human serum at 37 °C. We show that the application of PETase does not influence cell viability in vitro. Our work highlights the potential of applying biocatalysis in biomedicine and represents a first step towards finding a future solution to the problem that microplastics in the bloodstream may pose.
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Affiliation(s)
- Ximena Lopez-Lorenzo
- Department of Fibre and Polymer Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, Sweden.
- School of Engineering Sciences in Chemistry, Biotechnology and Health, Science for Life Laboratory, KTH Royal Institute of Technology, Stockholm, Sweden
| | - David Hueting
- Department of Fibre and Polymer Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, Sweden.
- School of Engineering Sciences in Chemistry, Biotechnology and Health, Science for Life Laboratory, KTH Royal Institute of Technology, Stockholm, Sweden
| | - Eliott Bosshard
- Department of Fibre and Polymer Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, Sweden.
- School of Engineering Sciences in Chemistry, Biotechnology and Health, Science for Life Laboratory, KTH Royal Institute of Technology, Stockholm, Sweden
| | - Per-Olof Syrén
- Department of Fibre and Polymer Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, Sweden.
- School of Engineering Sciences in Chemistry, Biotechnology and Health, Science for Life Laboratory, KTH Royal Institute of Technology, Stockholm, Sweden
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2
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Siódmiak J, Dulęba J, Kocot N, Mastalerz R, Haraldsson GG, Marszałł MP, Siódmiak T. A New Approach in Lipase-Octyl-Agarose Biocatalysis of 2-Arylpropionic Acid Derivatives. Int J Mol Sci 2024; 25:5084. [PMID: 38791124 PMCID: PMC11121684 DOI: 10.3390/ijms25105084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 04/23/2024] [Accepted: 05/02/2024] [Indexed: 05/26/2024] Open
Abstract
The use of lipase immobilized on an octyl-agarose support to obtain the optically pure enantiomers of chiral drugs in reactions carried out in organic solvents is a great challenge for chemical and pharmaceutical sciences. Therefore, it is extremely important to develop optimal procedures to achieve a high enantioselectivity of the biocatalysts in the organic medium. Our paper describes a new approach to biocatalysis performed in an organic solvent with the use of CALB-octyl-agarose support including the application of a polypropylene reactor, an appropriate buffer for immobilization (Tris base-pH 9, 100 mM), a drying step, and then the storage of immobilized lipases in a climatic chamber or a refrigerator. An immobilized lipase B from Candida antarctica (CALB) was used in the kinetic resolution of (R,S)-flurbiprofen by enantioselective esterification with methanol, reaching a high enantiomeric excess (eep = 89.6 ± 2.0%). As part of the immobilization optimization, the influence of different buffers was investigated. The effect of the reactor material and the reaction medium on the lipase activity was also studied. Moreover, the stability of the immobilized lipases: lipase from Candida rugosa (CRL) and CALB during storage in various temperature and humidity conditions (climatic chamber and refrigerator) was tested. The application of the immobilized CALB in a polypropylene reactor allowed for receiving over 9-fold higher conversion values compared to the results achieved when conducting the reaction in a glass reactor, as well as approximately 30-fold higher conversion values in comparison with free lipase. The good stability of the CALB-octyl-agarose support was demonstrated. After 7 days of storage in a climatic chamber or refrigerator (with protection from humidity) approximately 60% higher conversion values were obtained compared to the results observed for the immobilized form that had not been stored. The new approach involving the application of the CALB-octyl-agarose support for reactions performed in organic solvents indicates a significant role of the polymer reactor material being used in achieving high catalytic activity.
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Affiliation(s)
- Joanna Siódmiak
- Department of Laboratory Medicine, Faculty of Pharmacy, Ludwik Rydygier Collegium Medicum, Nicolaus Copernicus University in Toruń, 85-094 Bydgoszcz, Poland;
| | - Jacek Dulęba
- Department of Medicinal Chemistry, Faculty of Pharmacy, Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, 85-089 Bydgoszcz, Poland; (J.D.); (N.K.); (R.M.); (M.P.M.)
- Department of Pharmaceutical Technology, Faculty of Pharmacy, Medical Biotechnology and Laboratory Medicine, Pomeranian Medical University in Szczecin, 71-251 Szczecin, Poland
| | - Natalia Kocot
- Department of Medicinal Chemistry, Faculty of Pharmacy, Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, 85-089 Bydgoszcz, Poland; (J.D.); (N.K.); (R.M.); (M.P.M.)
- Doctoral School of Medical and Health Sciences, Jagiellonian University, Łazarza 16, 31-530 Kraków, Poland
- Department of Pharmaceutical Biochemistry, Faculty of Pharmacy, Jagiellonian University Medical College, Medyczna 9, 30-688 Kraków, Poland
| | - Rafał Mastalerz
- Department of Medicinal Chemistry, Faculty of Pharmacy, Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, 85-089 Bydgoszcz, Poland; (J.D.); (N.K.); (R.M.); (M.P.M.)
| | | | - Michał Piotr Marszałł
- Department of Medicinal Chemistry, Faculty of Pharmacy, Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, 85-089 Bydgoszcz, Poland; (J.D.); (N.K.); (R.M.); (M.P.M.)
| | - Tomasz Siódmiak
- Department of Medicinal Chemistry, Faculty of Pharmacy, Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, 85-089 Bydgoszcz, Poland; (J.D.); (N.K.); (R.M.); (M.P.M.)
- Department of Pharmaceutical Technology, Faculty of Pharmacy, Medical Biotechnology and Laboratory Medicine, Pomeranian Medical University in Szczecin, 71-251 Szczecin, Poland
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3
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Forero N, Liu C, Sabbah SG, Loewen MC, Yang TC. Assay Development for Metal-Dependent Enzymes-Influence of Reaction Buffers on Activities and Kinetic Characteristics. ACS OMEGA 2023; 8:40119-40127. [PMID: 37929113 PMCID: PMC10620931 DOI: 10.1021/acsomega.3c02835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Accepted: 09/29/2023] [Indexed: 11/07/2023]
Abstract
Buffers are often thought of as innocuous components of a reaction, with the sole task of maintaining the pH of a system. However, studies had shown that this is not always the case. Common buffers used in biochemical research, such as Tris (hydroxymethyl) aminomethane hydrochloride (Tris-HCl), can chelate metal ions and may thus affect the activity of metalloenzymes, which are enzymes that require metal ions for enhanced catalysis. To determine whether enzyme activity is influenced by buffer identity, the activity of three enzymes (BLC23O, Ro1,2-CTD, and trypsin) was comparatively characterized in N-2- hydroxyethylpiperazine-N'-2-ethanesulfonic acid (HEPES), Tris-HCl, and sodium phosphate buffer. The pH and temperature optima of BLC23O, a Mn2+-dependent dioxygenase, were first identified, and then the metal ion dissociation constant (Kd) was determined in the three buffer systems. It was observed that BLC23O exhibited different Kd values depending on the buffer, with the lowest (1.49 ± 0.05 μM) recorded in HEPES under the optimal set of conditions (pH 7.6 and 32.5 °C). Likewise, the kinetic parameters obtained varied depending on the buffer, with HEPES (pH 7.6) yielding overall the greatest catalytic efficiency and turnover number (kcat = 0.45 ± 0.01 s-1; kcat/Km = 0.84 ± 0.02 mM-1 s-1). To corroborate findings, the characterization of Fe3+-dependent Ro1,2-CTD was performed, resulting in different kinetic constants depending on the buffer (Km (HEPES, Tris-HCl, and Na-phosphate) = 1.80, 6.93, and 3.64 μM; kcat(HEPES, Tris-HCl, and Na-phosphate) = 0.64, 1.14, and 1.01 s-1; kcat/Km(HEPES, Tris-HCl, and Na-phosphate)= 0.36, 0.17, and 0.28 μM-1 s-1). In order to determine whether buffer identity influenced the enzymatic activity of nonmetalloenzymes alike, the characterization of trypsin was also carried out. Contrary to the previous results, trypsin yielded comparable kinetic parameters independent of the buffer (Km (HEPES, Tris-HCl, and Na-Phosphate) = 3.14, 3.07, and 2.91 mM; kcat(HEPES, Tris-HCl, and Na-phosphate) = 1.51, 1.47, and 1.53 s-1; kcat/Km (HEPES, Tris-HCl, and Na-phosphate) = 0.48, 0.48, and 0.52 mM-1 s-1). These results showed that the activity of tested metalloenzymes was impacted by different buffers. While selected buffers did not influence the tested nonmetalloenzyme activity, other research had shown impacts of buffers on other enzyme activities. As a result, we suggest that buffer selection be optimized for any new enzymes such that the results from one lab to another can be accurately compared.
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Affiliation(s)
- Natalia Forero
- Department
of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa K1N 6N5, Canada
| | - Chengsong Liu
- Aquatic
and Crop Resource Development Research Centre, National Research Council, Ottawa K1A 0R6, Canada
| | | | - Michele C. Loewen
- Aquatic
and Crop Resource Development Research Centre, National Research Council, Ottawa K1A 0R6, Canada
| | - Trent Chunzhong Yang
- Aquatic
and Crop Resource Development Research Centre, National Research Council, Ottawa K1A 0R6, Canada
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4
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Guo B, Lopez-Lorenzo X, Fang Y, Bäckström E, Capezza AJ, Vanga SR, Furó I, Hakkarainen M, Syrén PO. Fast Depolymerization of PET Bottle Mediated by Microwave Pre-Treatment and An Engineered PETase. CHEMSUSCHEM 2023; 16:e202300742. [PMID: 37384425 DOI: 10.1002/cssc.202300742] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Revised: 06/21/2023] [Accepted: 06/27/2023] [Indexed: 07/01/2023]
Abstract
Recycling plastics is the key to reaching a sustainable materials economy. Biocatalytic degradation of plastics shows great promise by allowing selective depolymerization of man-made materials into constituent building blocks under mild aqueous conditions. However, insoluble plastics have polymer chains that can reside in different conformations and show compact secondary structures that offer low accessibility for initiating the depolymerization reaction by enzymes. In this work, we overcome these shortcomings by microwave irradiation as a pre-treatment process to deliver powders of polyethylene terephthalate (PET) particles suitable for subsequent biotechnology-assisted plastic degradation by previously generated engineered enzymes. An optimized microwave step resulted in 1400 times higher integral of released terephthalic acid (TPA) from high-performance liquid chromatography (HPLC), compared to original untreated PET bottle. Biocatalytic plastic hydrolysis of substrates originating from PET bottles responded to 78 % yield conversion from 2 h microwave pretreatment and 1 h enzymatic reaction at 30 °C. The increase in activity stems from enhanced substrate accessibility from the microwave step, followed by the administration of designer enzymes capable of accommodating oligomers and shorter chains released in a productive conformation.
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Affiliation(s)
- Boyang Guo
- Department of Fibre and Polymer Technology, KTH Royal Institute of Technology, Teknikringen 50-58, 100 44, Stockholm, Sweden
- School of Chemistry, Biotechnology and Health, Science for Life Laboratory, KTH Royal Institute of Technology, Tomtebodavägen 23, 171 65, Solna, Sweden
| | - Ximena Lopez-Lorenzo
- Department of Fibre and Polymer Technology, KTH Royal Institute of Technology, Teknikringen 50-58, 100 44, Stockholm, Sweden
- School of Chemistry, Biotechnology and Health, Science for Life Laboratory, KTH Royal Institute of Technology, Tomtebodavägen 23, 171 65, Solna, Sweden
| | - Yuan Fang
- Department of Chemistry, KTH Royal Institute of Technology, Teknikringen 30-36, 100 44, Stockholm, Sweden
| | - Eva Bäckström
- Department of Fibre and Polymer Technology, KTH Royal Institute of Technology, Teknikringen 50-58, 100 44, Stockholm, Sweden
| | - Antonio Jose Capezza
- Department of Fibre and Polymer Technology, KTH Royal Institute of Technology, Teknikringen 50-58, 100 44, Stockholm, Sweden
| | - Sudarsan Reddy Vanga
- Department of Fibre and Polymer Technology, KTH Royal Institute of Technology, Teknikringen 50-58, 100 44, Stockholm, Sweden
- School of Chemistry, Biotechnology and Health, Science for Life Laboratory, KTH Royal Institute of Technology, Tomtebodavägen 23, 171 65, Solna, Sweden
| | - István Furó
- Department of Chemistry, KTH Royal Institute of Technology, Teknikringen 30-36, 100 44, Stockholm, Sweden
| | - Minna Hakkarainen
- Department of Fibre and Polymer Technology, KTH Royal Institute of Technology, Teknikringen 50-58, 100 44, Stockholm, Sweden
| | - Per-Olof Syrén
- Department of Fibre and Polymer Technology, KTH Royal Institute of Technology, Teknikringen 50-58, 100 44, Stockholm, Sweden
- School of Chemistry, Biotechnology and Health, Science for Life Laboratory, KTH Royal Institute of Technology, Tomtebodavägen 23, 171 65, Solna, Sweden
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5
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Lu B, Ohayon YP, Woloszyn K, Yang CF, Yoder JB, Rothschild LJ, Wind SJ, Hendrickson WA, Mao C, Seeman NC, Canary JW, Sha R, Vecchioni S. Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J Am Chem Soc 2023; 145:17945-17953. [PMID: 37530628 DOI: 10.1021/jacs.3c05478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/03/2023]
Abstract
Metal-mediated DNA (mmDNA) presents a pathway toward engineering bioinorganic and electronic behavior into DNA devices. Many chemical and biophysical forces drive the programmable chelation of metals between pyrimidine base pairs. Here, we developed a crystallographic method using the three-dimensional (3D) DNA tensegrity triangle motif to capture single- and multi-metal binding modes across granular changes to environmental pH using anomalous scattering. Leveraging this programmable crystal, we determined 28 biomolecular structures to capture mmDNA reactions. We found that silver(I) binds with increasing occupancy in T-T and U-U pairs at elevated pH levels, and we exploited this to capture silver(I) and mercury(II) within the same base pair and to isolate the titration points for homo- and heterometal base pair modes. We additionally determined the structure of a C-C pair with both silver(I) and mercury(II). Finally, we extend our paradigm to capture cadmium(II) in T-T pairs together with mercury(II) at high pH. The precision self-assembly of heterobimetallic DNA chemistry at the sub-nanometer scale will enable atomistic design frameworks for more elaborate mmDNA-based nanodevices and nanotechnologies.
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Affiliation(s)
- Brandon Lu
- Department of Chemistry, New York University, New York, New York 10003, United States
| | - Yoel P Ohayon
- Department of Chemistry, New York University, New York, New York 10003, United States
| | - Karol Woloszyn
- Department of Chemistry, New York University, New York, New York 10003, United States
| | - Chu-Fan Yang
- Department of Chemistry, New York University, New York, New York 10003, United States
| | - Jesse B Yoder
- IMCA-CAT, Argonne National Lab, Argonne, Illinois 60439, United States
| | - Lynn J Rothschild
- NASA Ames Research Center, Planetary Sciences Branch, Moffett Field, California 94035, United States
| | - Shalom J Wind
- Department of Applied Physics and Applied Mathematics, Columbia University, New York, New York 10027, United States
| | - Wayne A Hendrickson
- Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, United States
| | - Chengde Mao
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Nadrian C Seeman
- Department of Chemistry, New York University, New York, New York 10003, United States
| | - James W Canary
- Department of Chemistry, New York University, New York, New York 10003, United States
| | - Ruojie Sha
- Department of Chemistry, New York University, New York, New York 10003, United States
| | - Simon Vecchioni
- Department of Chemistry, New York University, New York, New York 10003, United States
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6
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Determinants for an Efficient Enzymatic Catalysis in Poly(Ethylene Terephthalate) Degradation. Catalysts 2023. [DOI: 10.3390/catal13030591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/18/2023] Open
Abstract
The enzymatic degradation of the recalcitrant poly(ethylene terephthalate) (PET) has been an important biotechnological goal. The present review focuses on the state of the art in enzymatic degradation of PET, and the challenges ahead. This review covers (i) enzymes acting on PET, (ii) protein improvements through selection or engineering, (iii) strategies to improve biocatalyst–polymer interaction and monomer yields. Finally, this review discusses critical points on PET degradation, and their related experimental aspects, that include the control of physicochemical parameters. The search for, and engineering of, PET hydrolases, have been widely studied to achieve this, and several examples are discussed here. Many enzymes, from various microbial sources, have been studied and engineered, but recently true PET hydrolases (PETases), active at moderate temperatures, were reported. For a circular economy process, terephtalic acid (TPA) production is critical. Some thermophilic cutinases and engineered PETases have been reported to release terephthalic acid in significant amounts. Some bottlenecks in enzyme performance are discussed, including enzyme activity, thermal stability, substrate accessibility, PET microstructures, high crystallinity, molecular mass, mass transfer, and efficient conversion into reusable fragments.
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7
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Pfaff L, Gao J, Li Z, Jäckering A, Weber G, Mican J, Chen Y, Dong W, Han X, Feiler CG, Ao YF, Badenhorst CPS, Bednar D, Palm GJ, Lammers M, Damborsky J, Strodel B, Liu W, Bornscheuer UT, Wei R. Multiple Substrate Binding Mode-Guided Engineering of a Thermophilic PET Hydrolase. ACS Catal 2022; 12:9790-9800. [PMID: 35966606 PMCID: PMC9361285 DOI: 10.1021/acscatal.2c02275] [Citation(s) in RCA: 42] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2022] [Revised: 07/06/2022] [Indexed: 12/13/2022]
Abstract
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Thermophilic polyester hydrolases (PES-H) have recently
enabled
biocatalytic recycling of the mass-produced synthetic polyester polyethylene
terephthalate (PET), which has found widespread use in the packaging
and textile industries. The growing demand for efficient PET hydrolases
prompted us to solve high-resolution crystal structures of two metagenome-derived
enzymes (PES-H1 and PES-H2) and notably also in complex with various
PET substrate analogues. Structural analyses and computational modeling
using molecular dynamics simulations provided an understanding of
how product inhibition and multiple substrate binding modes influence
key mechanistic steps of enzymatic PET hydrolysis. Key residues involved
in substrate-binding and those identified previously as mutational
hotspots in homologous enzymes were subjected to mutagenesis. At 72
°C, the L92F/Q94Y variant of PES-H1 exhibited 2.3-fold and 3.4-fold
improved hydrolytic activity against amorphous PET films and pretreated
real-world PET waste, respectively. The R204C/S250C variant of PES-H1
had a 6.4 °C higher melting temperature than the wild-type enzyme
but retained similar hydrolytic activity. Under optimal reaction conditions,
the L92F/Q94Y variant of PES-H1 hydrolyzed low-crystallinity PET materials
2.2-fold more efficiently than LCC ICCG, which was previously the
most active PET hydrolase reported in the literature. This property
makes the L92F/Q94Y variant of PES-H1 a good candidate for future
applications in industrial plastic recycling processes.
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Affiliation(s)
- Lara Pfaff
- Department of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany
| | - Jian Gao
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic Area, Tianjin 300308, China
- National Technology Innovation Center of Synthetic Biology, 32 West Seventh Avenue, Tianjin
Airport Economic Area, Tianjin 300308, China
| | - Zhishuai Li
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic Area, Tianjin 300308, China
- University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049 China
| | - Anna Jäckering
- Institute of Biological Information Processing: Structural Biochemistry (IBI-7), Forschungszentrum Jülich, Wilhelm-Johnen-Straße, 52428 Jülich, Germany
- Institute of Theoretical and Computational Chemistry, Heinrich Heine University, Düsseldorf, Universitätsstr. 1, 40225 Düsseldorf, Germany
| | - Gert Weber
- Helmholtz-Zentrum Berlin für Materialien und Energie, Hahn-Meitner-Platz 1, 14109 Berlin, Germany
| | - Jan Mican
- Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kamenice 5/C13, 625 00 Brno, Czech Republic
| | - Yinping Chen
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Weiliang Dong
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Xu Han
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic Area, Tianjin 300308, China
- National Technology Innovation Center of Synthetic Biology, 32 West Seventh Avenue, Tianjin
Airport Economic Area, Tianjin 300308, China
| | - Christian G. Feiler
- Helmholtz-Zentrum Berlin für Materialien und Energie, Hahn-Meitner-Platz 1, 14109 Berlin, Germany
| | - Yu-Fei Ao
- Department of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany
- CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun North First Street 2, Beijing 100190, China
| | - Christoffel P. S. Badenhorst
- Department of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany
| | - David Bednar
- Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kamenice 5/C13, 625 00 Brno, Czech Republic
- International Clinical Research Center, St. Anne’s University Hospital, Pekarska 53, 656 91 Brno, Czech Republic
| | - Gottfried J. Palm
- Department Synthetic and Structural Biochemistry, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany
| | - Michael Lammers
- Department Synthetic and Structural Biochemistry, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany
| | - Jiri Damborsky
- Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kamenice 5/C13, 625 00 Brno, Czech Republic
- International Clinical Research Center, St. Anne’s University Hospital, Pekarska 53, 656 91 Brno, Czech Republic
| | - Birgit Strodel
- Institute of Biological Information Processing: Structural Biochemistry (IBI-7), Forschungszentrum Jülich, Wilhelm-Johnen-Straße, 52428 Jülich, Germany
- Institute of Theoretical and Computational Chemistry, Heinrich Heine University, Düsseldorf, Universitätsstr. 1, 40225 Düsseldorf, Germany
| | - Weidong Liu
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic Area, Tianjin 300308, China
- National Technology Innovation Center of Synthetic Biology, 32 West Seventh Avenue, Tianjin
Airport Economic Area, Tianjin 300308, China
- University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049 China
| | - Uwe T. Bornscheuer
- Department of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany
| | - Ren Wei
- Department of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany
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8
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Sonnendecker C, Oeser J, Richter PK, Hille P, Zhao Z, Fischer C, Lippold H, Blázquez‐Sánchez P, Engelberger F, Ramírez‐Sarmiento CA, Oeser T, Lihanova Y, Frank R, Jahnke H, Billig S, Abel B, Sträter N, Matysik J, Zimmermann W. Low Carbon Footprint Recycling of Post-Consumer PET Plastic with a Metagenomic Polyester Hydrolase. CHEMSUSCHEM 2022; 15:e202101062. [PMID: 34129279 PMCID: PMC9303343 DOI: 10.1002/cssc.202101062] [Citation(s) in RCA: 42] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 06/14/2021] [Indexed: 06/01/2023]
Abstract
Earth is flooded with plastics and the need for sustainable recycling strategies for polymers has become increasingly urgent. Enzyme-based hydrolysis of post-consumer plastic is an emerging strategy for closed-loop recycling of polyethylene terephthalate (PET). The polyester hydrolase PHL7, isolated from a compost metagenome, completely hydrolyzes amorphous PET films, releasing 91 mg of terephthalic acid per hour and mg of enzyme. Vertical scanning interferometry shows degradation rates of the PET film of 6.8 μm h-1 . Structural analysis indicates the importance of leucine at position 210 for the extraordinarily high PET-hydrolyzing activity of PHL7. Within 24 h, 0.6 mgenzyme gPET -1 completely degrades post-consumer thermoform PET packaging in an aqueous buffer at 70 °C without any energy-intensive pretreatments. Terephthalic acid recovered from the enzymatic hydrolysate is then used to synthesize virgin PET, demonstrating the potential of polyester hydrolases as catalysts in sustainable PET recycling processes with a low carbon footprint.
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Affiliation(s)
| | - Juliane Oeser
- Department of Microbiology and Bioprocess Technology Institute of BiochemistryLeipzig University04103LeipzigGermany
| | - P. Konstantin Richter
- Institute of Bioanalytical Chemistry, Centre for Biotechnology and BiomedicineLeipzig University04103LeipzigGermany
| | - Patrick Hille
- Department of Microbiology and Bioprocess Technology Institute of BiochemistryLeipzig University04103LeipzigGermany
| | - Ziyue Zhao
- Institute of Analytical ChemistryLeipzig University04103LeipzigGermany
| | - Cornelius Fischer
- Helmholtz-Zentrum Dresden-Rossendorf (HZDR)Institut für Ressourcenökologie Abteilung Reaktiver TransportD-04318LeipzigGermany
| | - Holger Lippold
- Helmholtz-Zentrum Dresden-Rossendorf (HZDR)Institut für Ressourcenökologie Abteilung Reaktiver TransportD-04318LeipzigGermany
| | - Paula Blázquez‐Sánchez
- Institute for Biological and Medical Engineering Schools of Engineering, Medicine and Biological SciencesPontificia Universidad Católica de ChileSantiago7820436Chile
- ANID—Millennium Science Initiative ProgramMillennium Institute for Integrative Biology (iBio)Santiago8331150Chile
| | - Felipe Engelberger
- Institute for Biological and Medical Engineering Schools of Engineering, Medicine and Biological SciencesPontificia Universidad Católica de ChileSantiago7820436Chile
- ANID—Millennium Science Initiative ProgramMillennium Institute for Integrative Biology (iBio)Santiago8331150Chile
| | - César A. Ramírez‐Sarmiento
- Institute for Biological and Medical Engineering Schools of Engineering, Medicine and Biological SciencesPontificia Universidad Católica de ChileSantiago7820436Chile
- ANID—Millennium Science Initiative ProgramMillennium Institute for Integrative Biology (iBio)Santiago8331150Chile
| | - Thorsten Oeser
- Department of Microbiology and Bioprocess Technology Institute of BiochemistryLeipzig University04103LeipzigGermany
| | - Yuliia Lihanova
- Institute of Analytical ChemistryLeipzig University04103LeipzigGermany
| | - Ronny Frank
- Centre for Biotechnology and Biomedicine Molecular Biological-Biochemical Processing TechnologyLeipzig University04103LeipzigGermany
| | - Heinz‐Georg Jahnke
- Centre for Biotechnology and Biomedicine Molecular Biological-Biochemical Processing TechnologyLeipzig University04103LeipzigGermany
| | - Susan Billig
- Institute of Analytical ChemistryLeipzig University04103LeipzigGermany
| | - Bernd Abel
- Leibniz Institute of Surface Engineering (IOM)Wilhelm-Ostwald-Institute of Physical and Theoretical Chemistry04103LeipzigGermany
| | - Norbert Sträter
- Institute of Bioanalytical Chemistry, Centre for Biotechnology and BiomedicineLeipzig University04103LeipzigGermany
| | - Jörg Matysik
- Institute of Analytical ChemistryLeipzig University04103LeipzigGermany
| | - Wolfgang Zimmermann
- Institute of Analytical ChemistryLeipzig University04103LeipzigGermany
- Department of Microbiology and Bioprocess Technology Institute of BiochemistryLeipzig University04103LeipzigGermany
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9
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Wei R, von Haugwitz G, Pfaff L, Mican J, Badenhorst CP, Liu W, Weber G, Austin HP, Bednar D, Damborsky J, Bornscheuer UT. Mechanism-Based Design of Efficient PET Hydrolases. ACS Catal 2022; 12:3382-3396. [PMID: 35368328 PMCID: PMC8939324 DOI: 10.1021/acscatal.1c05856] [Citation(s) in RCA: 85] [Impact Index Per Article: 42.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 02/04/2022] [Indexed: 01/06/2023]
Abstract
Polyethylene terephthalate (PET) is the most widespread synthetic polyester, having been utilized in textile fibers and packaging materials for beverages and food, contributing considerably to the global solid waste stream and environmental plastic pollution. While enzymatic PET recycling and upcycling have recently emerged as viable disposal methods for a circular plastic economy, only a handful of benchmark enzymes have been thoroughly described and subjected to protein engineering for improved properties over the last 16 years. By analyzing the specific material properties of PET and the reaction mechanisms in the context of interfacial biocatalysis, this Perspective identifies several limitations in current enzymatic PET degradation approaches. Unbalanced enzyme-substrate interactions, limited thermostability, and low catalytic efficiency at elevated reaction temperatures, and inhibition caused by oligomeric degradation intermediates still hamper industrial applications that require high catalytic efficiency. To overcome these limitations, successful protein engineering studies using innovative experimental and computational approaches have been published extensively in recent years in this thriving research field and are summarized and discussed in detail here. The acquired knowledge and experience will be applied in the near future to address plastic waste contributed by other mass-produced polymer types (e.g., polyamides and polyurethanes) that should also be properly disposed by biotechnological approaches.
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Affiliation(s)
- Ren Wei
- Institute
of Biochemistry, Department of Biotechnology & Enzyme Catalysis, University of Greifswald, Felix-Hausdorff-Str. 4, D-17487 Greifswald, Germany
| | - Gerlis von Haugwitz
- Institute
of Biochemistry, Department of Biotechnology & Enzyme Catalysis, University of Greifswald, Felix-Hausdorff-Str. 4, D-17487 Greifswald, Germany
| | - Lara Pfaff
- Institute
of Biochemistry, Department of Biotechnology & Enzyme Catalysis, University of Greifswald, Felix-Hausdorff-Str. 4, D-17487 Greifswald, Germany
| | - Jan Mican
- Loschmidt
Laboratories, Department of Experimental Biology and RECETOX, Faculty
of Science, Masaryk University, 625 00 Brno, Czech Republic
- International
Clinical Research Center, St. Anne’s University Hospital and
Faculty of Medicine, Masaryk University, 656 91 Brno, Czech Republic
| | - Christoffel P.
S. Badenhorst
- Institute
of Biochemistry, Department of Biotechnology & Enzyme Catalysis, University of Greifswald, Felix-Hausdorff-Str. 4, D-17487 Greifswald, Germany
| | - Weidong Liu
- Tianjin
Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport
Economic Area, Tianjin, 300308, China
| | - Gert Weber
- Macromolecular
Crystallography, Helmholtz-Zentrum Berlin
für Materialien und Energie, Albert-Einstein-Straße 15, D-12489 Berlin, Germany
| | - Harry P. Austin
- Institute
of Biochemistry, Department of Biotechnology & Enzyme Catalysis, University of Greifswald, Felix-Hausdorff-Str. 4, D-17487 Greifswald, Germany
| | - David Bednar
- Loschmidt
Laboratories, Department of Experimental Biology and RECETOX, Faculty
of Science, Masaryk University, 625 00 Brno, Czech Republic
- International
Clinical Research Center, St. Anne’s University Hospital and
Faculty of Medicine, Masaryk University, 656 91 Brno, Czech Republic
| | - Jiri Damborsky
- Loschmidt
Laboratories, Department of Experimental Biology and RECETOX, Faculty
of Science, Masaryk University, 625 00 Brno, Czech Republic
- International
Clinical Research Center, St. Anne’s University Hospital and
Faculty of Medicine, Masaryk University, 656 91 Brno, Czech Republic
| | - Uwe T. Bornscheuer
- Institute
of Biochemistry, Department of Biotechnology & Enzyme Catalysis, University of Greifswald, Felix-Hausdorff-Str. 4, D-17487 Greifswald, Germany
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10
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Influence of substrate crystallinity and glass transition temperature on enzymatic degradation of polyethylene terephthalate (PET). N Biotechnol 2022; 69:28-35. [PMID: 35247624 DOI: 10.1016/j.nbt.2022.02.006] [Citation(s) in RCA: 32] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 01/23/2022] [Accepted: 02/27/2022] [Indexed: 11/20/2022]
Abstract
This work examines the significance of the degree of polyethylene terephthalate (PET) crystallinity (XC) and glass transition temperature (Tg) on enzymatic degradation of PET at elevated temperatures using two engineered, thermostable PET degrading enzymes: LCCICCG, a variant of the leaf-branch compost cutinase, and DuraPETase, evolved from the Ideonella sakaiensis PETase. XC was systematically varied by thermal annealing of PET disks (Ø 6mm, thickness 1mm). XC affected the enzymatic product release rate that essentially ceased at XC 22-27% for the LCCICCG and at XC ∼17% for the DuraPETase. Scanning Electron Microscopy revealed that enzymatic treatment produced cavities on the PET surface when XC was >10% but resulted in a smooth surface on amorphous PET (XC ∼10%). The Tg of amorphous PET disks decreased from 74°C to 61°C during 24h pre-soaking in water at 65°C, while XC remained unchanged. Enzymatic reaction on pre-soaked disks at 65°C, i.e. above the Tg, did not affect the enzymatic product release rate, but delayed the initiation of enzymatic attack despite the lower Tg compared to enzymatic reaction on un-soaked samples. The data suggest that extended soaking of PET at 65°C induces an increase in the rigid amorphous fraction (XRAF) that impedes the enzymatic attack. These findings improve the understanding of enzymatic PET degradation and have implications for development of efficient enzymatic PET upcycling processes.
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11
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Antarctic polyester hydrolases degrade aliphatic and aromatic polyesters at moderate temperatures. Appl Environ Microbiol 2021; 88:e0184221. [PMID: 34705547 DOI: 10.1128/aem.01842-21] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Polyethylene terephthalate (PET) is one of the most widely used synthetic plastics in the packaging industry, and consequently has become one of the main components of plastic waste found in the environment. However, several microorganisms have been described to encode enzymes that catalyze the depolymerization of PET. While most known PET hydrolases are thermophilic and require reaction temperatures between 60°C to 70°C for an efficient hydrolysis of PET, a partial hydrolysis of amorphous PET at lower temperatures by the polyester hydrolase IsPETase from the mesophilic bacterium Ideonella sakaiensis has also been reported. We show that polyester hydrolases from the Antarctic bacteria Moraxella sp. strain TA144 (Mors1) and Oleispira antarctica RB-8 (OaCut) were able to hydrolyze the aliphatic polyester polycaprolactone as well as the aromatic polyester PET at a reaction temperature of 25°C. Mors1 caused a weight loss of amorphous PET films and thus constitutes a PET-degrading psychrophilic enzyme. Comparative modelling of Mors1 showed that the amino acid composition of its active site resembled both thermophilic and mesophilic PET hydrolases. Lastly, bioinformatic analysis of Antarctic metagenomic samples demonstrated that members of the Moraxellaceae family carry candidate genes coding for further potential psychrophilic PET hydrolases. IMPORTANCE A myriad of consumer products contains polyethylene terephthalate (PET), a plastic that has accumulated as waste in the environment due to its long-term stability and poor waste management. One promising solution is the enzymatic biodegradation of PET, with most known enzymes only catalyzing this process at high temperatures. Here, we bioinformatically identified and biochemically characterized an enzyme from an Antarctic organism that degrades PET at 25°C with similar efficiency than the few PET-degrading enzymes active at moderate temperatures. Reasoning that Antarctica harbors other PET-degrading enzymes, we analyzed available data from Antarctic metagenomic samples and successfully identified other potential enzymes. Our findings contribute to increasing the repertoire of known PET-degrading enzymes that are currently being considered as biocatalysts for the biological recycling of plastic waste.
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12
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Kawai F. Emerging Strategies in Polyethylene Terephthalate Hydrolase Research for Biorecycling. CHEMSUSCHEM 2021; 14:4115-4122. [PMID: 33949146 DOI: 10.1002/cssc.202100740] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2021] [Revised: 05/02/2021] [Indexed: 06/12/2023]
Abstract
The research on polyethylene terephthalate (PET) hydrolyzing enzymes started in 2005; several studies are now nearing the objective of their application in biorecycling of PET, which is an urgent environmental issue. The thermostability of PET hydrolases must be higher than 70 °C, which has already been established by several thermophilic cutinases, as higher thermostability results in higher activity. Additionally, pretreatment of waste PET to more enzyme-attackable forms is necessary for PET biorecycling. This Minireview summarizes research on enzymatic PET hydrolysis from two viewpoints: 1) improvement of PET hydrolases by focusing on their thermostabilities by mutation of enzyme genes, their expression in several hosts, and their modifications; and 2) processing of waste PET to readily biodegradable forms. Finally, the outlook of PET biorecycling is described.
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Affiliation(s)
- Fusako Kawai
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
- Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan
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13
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Carniel A, Waldow VDA, Castro AMD. A comprehensive and critical review on key elements to implement enzymatic PET depolymerization for recycling purposes. Biotechnol Adv 2021; 52:107811. [PMID: 34333090 DOI: 10.1016/j.biotechadv.2021.107811] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 07/15/2021] [Accepted: 07/26/2021] [Indexed: 11/25/2022]
Abstract
Plastics production and recycling chains must be refitted to a circular economy. Poly(ethylene terephthalate) (PET) is especially suitable for recycling because of its hydrolysable ester bonds and high environmental impact due to employment in single-use packaging, so that recycling processes utilizing enzymes are a promising biotechnological route to monomer recovery. However, enzymatic PET depolymerization still faces challenges to become a competitive route at an industrial level. In this review, PET characteristics as a substrate for enzymes are discussed, as well as the analytical methods used to evaluate the reaction progress. A comprehensive view on the biocatalysts used is discussed. Subsequently, different strategies pursued to improve enzymatic PET depolymerization are presented, including enzyme modification through mutagenesis, utilization of multiple enzymes, improvement of the interaction between enzymes and the hydrophobic surface of PET, and various reaction conditions (e.g., particle size, reaction medium, agitation, and additives). All scientific developments regarding these different aspects of PET depolymerization are crucial to offer a scalable and competitive technology. However, they must be integrated into global processes from upstream to downstream, discussed here at the final sections, which must be evaluated for their economic feasibility and life cycle assessment to check if PET recycling chains can be broadly incorporated into the future circular economy.
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Affiliation(s)
- Adriano Carniel
- School of Chemistry, Federal University of Rio de Janeiro (UFRJ) - Cidade Universitária, Rio de Janeiro, RJ CEP 21949-900, Brazil
| | - Vinicius de Abreu Waldow
- Petrobras Research, Development and Innovation Center (Cenpes), Av. Horácio Macedo, n° 950 - Cidade Universitária, Rio de Janeiro, RJ CEP 21941-915, Brazil
| | - Aline Machado de Castro
- Petrobras Research, Development and Innovation Center (Cenpes), Av. Horácio Macedo, n° 950 - Cidade Universitária, Rio de Janeiro, RJ CEP 21941-915, Brazil.
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14
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Vogel K, Wei R, Pfaff L, Breite D, Al-Fathi H, Ortmann C, Estrela-Lopis I, Venus T, Schulze A, Harms H, Bornscheuer UT, Maskow T. Enzymatic degradation of polyethylene terephthalate nanoplastics analyzed in real time by isothermal titration calorimetry. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 773:145111. [PMID: 33940717 DOI: 10.1016/j.scitotenv.2021.145111] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 01/06/2021] [Accepted: 01/06/2021] [Indexed: 06/12/2023]
Abstract
Plastics are globally used for a variety of benefits. As a consequence of poor recycling or reuse, improperly disposed plastic waste accumulates in terrestrial and aquatic ecosystems to a considerable extent. Large plastic waste items become fragmented to small particles through mechanical and (photo)chemical processes. Particles with sizes ranging from millimeter (microplastics, <5 mm) to nanometer (nanoplastics, NP, <100 nm) are apparently persistent and have adverse effects on ecosystems and human health. Current research therefore focuses on whether and to what extent microorganisms or enzymes can degrade these NP. In this study, we addressed the question of what information isothermal titration calorimetry, which tracks the heat of reaction of the chain scission of a polyester, can provide about the kinetics and completeness of the degradation process. The majority of the heat represents the cleavage energy of the ester bonds in polymer backbones providing real-time kinetic information. Calorimetry operates even in complex matrices. Using the example of the cutinase-catalyzed degradation of polyethylene terephthalate (PET) nanoparticles, we found that calorimetry (isothermal titration calorimetry-ITC) in combination with thermokinetic models is excellently suited for an in-depth analysis of the degradation processes of NP. For instance, we can separately quantify i) the enthalpy of surface adsorption ∆AdsH = 129 ± 2 kJ mol-1, ii) the enthalpy of the cleavage of the ester bonds ∆EBH = -58 ± 1.9 kJ mol-1 and the apparent equilibrium constant of the enzyme substrate complex K = 0.046 ± 0.015 g L-1. It could be determined that the heat production of PET NP degradation depends to 95% on the reaction heat and only to 5% on the adsorption heat. The fact that the percentage of cleaved ester bonds (η = 12.9 ± 2.4%) is quantifiable with the new method is of particular practical importance. The new method promises a quantification of enzymatic and microbial adsorption to NP and their degradation in mimicked real-world aquatic conditions.
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Affiliation(s)
- Kristina Vogel
- Department of Environmental Microbiology, Helmholtz-Centre for Environmental Research - UFZ, Permoserstraße 15, D-04318 Leipzig, Germany; Institute for Drug Discovery, Leipzig University Medical School, Leipzig University, Bruederstr, 34, D-04103 Leipzig, Germany
| | - Ren Wei
- Department of Biotechnology and Enzyme Catalysis, Institute for Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, D-17487 Greifswald, Germany.
| | - Lara Pfaff
- Department of Biotechnology and Enzyme Catalysis, Institute for Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, D-17487 Greifswald, Germany
| | - Daniel Breite
- Leibniz Institute of Surface Engineering (IOM), Permoserstraße 15, D-04318 Leipzig, Germany
| | - Hassan Al-Fathi
- Department of Environmental Microbiology, Helmholtz-Centre for Environmental Research - UFZ, Permoserstraße 15, D-04318 Leipzig, Germany
| | | | - Irina Estrela-Lopis
- Institute for Medical Physics and Biophysics, Medical Faculty, Leipzig University, Härtelstr, 16-18, D-04107 Leipzig, Germany
| | - Tom Venus
- Institute for Medical Physics and Biophysics, Medical Faculty, Leipzig University, Härtelstr, 16-18, D-04107 Leipzig, Germany
| | - Agnes Schulze
- Leibniz Institute of Surface Engineering (IOM), Permoserstraße 15, D-04318 Leipzig, Germany
| | - Hauke Harms
- Department of Environmental Microbiology, Helmholtz-Centre for Environmental Research - UFZ, Permoserstraße 15, D-04318 Leipzig, Germany
| | - Uwe T Bornscheuer
- Department of Biotechnology and Enzyme Catalysis, Institute for Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, D-17487 Greifswald, Germany
| | - Thomas Maskow
- Department of Environmental Microbiology, Helmholtz-Centre for Environmental Research - UFZ, Permoserstraße 15, D-04318 Leipzig, Germany.
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15
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Tiso T, Narancic T, Wei R, Pollet E, Beagan N, Schröder K, Honak A, Jiang M, Kenny ST, Wierckx N, Perrin R, Avérous L, Zimmermann W, O'Connor K, Blank LM. Towards bio-upcycling of polyethylene terephthalate. Metab Eng 2021; 66:167-178. [PMID: 33865980 DOI: 10.1016/j.ymben.2021.03.011] [Citation(s) in RCA: 108] [Impact Index Per Article: 36.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Revised: 02/24/2021] [Accepted: 03/13/2021] [Indexed: 12/29/2022]
Abstract
Over 359 million tons of plastics were produced worldwide in 2018, with significant growth expected in the near future, resulting in the global challenge of end-of-life management. The recent identification of enzymes that degrade plastics previously considered non-biodegradable opens up opportunities to steer the plastic recycling industry into the realm of biotechnology. Here, the sequential conversion of post-consumer polyethylene terephthalate (PET) into two types of bioplastics is presented: a medium chain-length polyhydroxyalkanoate (PHA) and a novel bio-based poly(amide urethane) (bio-PU). PET films are hydrolyzed by a thermostable polyester hydrolase yielding highly pure terephthalate and ethylene glycol. The obtained hydrolysate is used directly as a feedstock for a terephthalate-degrading Pseudomonas umsongensis GO16, also evolved to efficiently metabolize ethylene glycol, to produce PHA. The strain is further modified to secrete hydroxyalkanoyloxy-alkanoates (HAAs), which are used as monomers for the chemo-catalytic synthesis of bio-PU. In short, a novel value-chain for PET upcycling is shown that circumvents the costly purification of PET monomers, adding technological flexibility to the global challenge of end-of-life management of plastics.
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Affiliation(s)
- Till Tiso
- iAMB - Institute of Applied Microbiology. ABBt - Aachen Biology and Biotechnology, RWTH Aachen University, Worringerweg 1, D-52074, Aachen, Germany
| | - Tanja Narancic
- BiOrbic - SFI Bioeconomy Research Centre, University College Dublin, Belfield, Dublin 4, Ireland; School of Biomolecular and Biomedical Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
| | - Ren Wei
- Department of Microbiology and Bioprocess Technology, Institute of Biochemistry, Leipzig University, Johannisallee 23, D-04103, Leipzig, Germany
| | - Eric Pollet
- BioTeam/ICPEES-ECPM, UMR CNRS 7515, Strasbourg University, 25 rue Becquerel, F-67087, Strasbourg Cedex 2, France
| | - Niall Beagan
- BiOrbic - SFI Bioeconomy Research Centre, University College Dublin, Belfield, Dublin 4, Ireland
| | - Katja Schröder
- iAMB - Institute of Applied Microbiology. ABBt - Aachen Biology and Biotechnology, RWTH Aachen University, Worringerweg 1, D-52074, Aachen, Germany
| | - Annett Honak
- Department of Microbiology and Bioprocess Technology, Institute of Biochemistry, Leipzig University, Johannisallee 23, D-04103, Leipzig, Germany
| | - Mengying Jiang
- BioTeam/ICPEES-ECPM, UMR CNRS 7515, Strasbourg University, 25 rue Becquerel, F-67087, Strasbourg Cedex 2, France; SOPREMA, 14 rue de Saint-Nazaire, F-67025 Strasbourg Cedex, France
| | - Shane T Kenny
- Bioplastech Ltd., NovaUCD, Belfield Innovation Park, University College Dublin, Belfield, Dublin 4, Ireland
| | - Nick Wierckx
- iAMB - Institute of Applied Microbiology. ABBt - Aachen Biology and Biotechnology, RWTH Aachen University, Worringerweg 1, D-52074, Aachen, Germany; Institute of Bio- and Geosciences IBG-1: Biotechnology, Forschungszentrum Jülich, 52425, Jülich, Germany
| | - Rémi Perrin
- SOPREMA, 14 rue de Saint-Nazaire, F-67025 Strasbourg Cedex, France
| | - Luc Avérous
- BioTeam/ICPEES-ECPM, UMR CNRS 7515, Strasbourg University, 25 rue Becquerel, F-67087, Strasbourg Cedex 2, France
| | - Wolfgang Zimmermann
- Department of Microbiology and Bioprocess Technology, Institute of Biochemistry, Leipzig University, Johannisallee 23, D-04103, Leipzig, Germany
| | - Kevin O'Connor
- BiOrbic - SFI Bioeconomy Research Centre, University College Dublin, Belfield, Dublin 4, Ireland; School of Biomolecular and Biomedical Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland.
| | - Lars M Blank
- iAMB - Institute of Applied Microbiology. ABBt - Aachen Biology and Biotechnology, RWTH Aachen University, Worringerweg 1, D-52074, Aachen, Germany.
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16
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Yan F, Wei R, Cui Q, Bornscheuer UT, Liu Y. Thermophilic whole-cell degradation of polyethylene terephthalate using engineered Clostridium thermocellum. Microb Biotechnol 2021; 14:374-385. [PMID: 32343496 PMCID: PMC7936307 DOI: 10.1111/1751-7915.13580] [Citation(s) in RCA: 76] [Impact Index Per Article: 25.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 04/05/2020] [Accepted: 04/07/2020] [Indexed: 12/03/2022] Open
Abstract
Polyethylene terephthalate (PET) is a mass-produced synthetic polyester contributing remarkably to the accumulation of solid plastics waste and plastics pollution in the natural environments. Recently, bioremediation of plastics waste using engineered enzymes has emerged as an eco-friendly alternative approach for the future plastic circular economy. Here we genetically engineered a thermophilic anaerobic bacterium, Clostridium thermocellum, to enable the secretory expression of a thermophilic cutinase (LCC), which was originally isolated from a plant compost metagenome and can degrade PET at up to 70°C. This engineered whole-cell biocatalyst allowed a simultaneous high-level expression of LCC and conspicuous degradation of commercial PET films at 60°C. After 14 days incubation of a batch culture, more than 60% of the initial mass of a PET film (approximately 50 mg) was converted into soluble monomer feedstocks, indicating a markedly higher degradation performance than previously reported whole-cell-based PET biodegradation systems using mesophilic bacteria or microalgae. Our findings provide clear evidence that, compared to mesophilic species, thermophilic microbes are a more promising synthetic microbial chassis for developing future biodegradation processes of PET waste.
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Affiliation(s)
- Fei Yan
- CAS Key Laboratory of BiofuelsShandong Provincial Key Laboratory of Synthetic BiologyQingdao Institute of Bioenergy and Bioprocess TechnologyChinese Academy of SciencesQingdao266101China
- Dalian National Laboratory for Clean EnergyQingdao266101China
- University of Chinese Academy of SciencesChinese Academy of SciencesBeijing100049China
| | - Ren Wei
- Department of Biotechnology and Enzyme CatalysisInstitute of BiochemistryGreifswald UniversityFelix-Hausdorff-Str. 4D-17487GreifswaldGermany
| | - Qiu Cui
- CAS Key Laboratory of BiofuelsShandong Provincial Key Laboratory of Synthetic BiologyQingdao Institute of Bioenergy and Bioprocess TechnologyChinese Academy of SciencesQingdao266101China
- Dalian National Laboratory for Clean EnergyQingdao266101China
- University of Chinese Academy of SciencesChinese Academy of SciencesBeijing100049China
| | - Uwe T. Bornscheuer
- Department of Biotechnology and Enzyme CatalysisInstitute of BiochemistryGreifswald UniversityFelix-Hausdorff-Str. 4D-17487GreifswaldGermany
| | - Ya‐Jun Liu
- CAS Key Laboratory of BiofuelsShandong Provincial Key Laboratory of Synthetic BiologyQingdao Institute of Bioenergy and Bioprocess TechnologyChinese Academy of SciencesQingdao266101China
- Dalian National Laboratory for Clean EnergyQingdao266101China
- University of Chinese Academy of SciencesChinese Academy of SciencesBeijing100049China
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17
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Oda M, Numoto N, Bekker GJ, Kamiya N, Kawai F. Cutinases from thermophilic bacteria (actinomycetes): From identification to functional and structural characterization. Methods Enzymol 2021; 648:159-185. [PMID: 33579402 DOI: 10.1016/bs.mie.2020.12.031] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
Thermophilic cutinases are mainly obtained from thermophilic actinomycetes, and are categorized into two groups, i.e., those with higher (>70°C) or lower (<70°C) thermostabilities. The thermostabilities of cutinases are highly relevant to their ability to degrade polyethylene terephthalate (PET). Many crystal structures of thermophilic cutinases have been solved, showing that their overall backbone structures are identical, irrespective of their ability to hydrolyze PET. One of the unique properties of cutinases is that metal ion-binding on the enzyme's surface both elevates their melting temperatures and activates the enzyme. In this chapter, we introduce the methodology for the identification and cloning of thermophilic cutinases from actinomycetes. For detailed characterization of cutinases, we describe the approach to analyze the intricate dynamics of the enzyme, based on its crystal structures complexed with metal ions and model substrates using a combination of experimental and computational techniques.
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Affiliation(s)
- Masayuki Oda
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Nobutaka Numoto
- Medical Research Institute, Tokyo Medical and Dental University (TMDU), Bunkyo-ku, Tokyo, Japan
| | - Gert-Jan Bekker
- Institute for Protein Research, Osaka University, Suita, Osaka, Japan
| | - Narutoshi Kamiya
- Graduate School of Simulation Studies, University of Hyogo, Kobe, Japan
| | - Fusako Kawai
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan.
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18
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Pérez-García P, Danso D, Zhang H, Chow J, Streit WR. Exploring the global metagenome for plastic-degrading enzymes. Methods Enzymol 2021; 648:137-157. [PMID: 33579401 DOI: 10.1016/bs.mie.2020.12.022] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Plastics are extensively used in our daily life, but they are also a major pollutant of our biosphere accumulating in both the ocean and the land. In the recent years, few enzymes and microorganisms have been discovered with the ability to degrade even fewer synthetic polymers. Nevertheless, more active species and enzymes need to be discovered and described in order to gain more knowledge about protein adaptation to the degradation of not-naturally-occurring polymers. Within this chapter, we focus on efficient methods to identify novel polyethylene terephthalate-degrading enzymes (PETases) from culturable and non-culturable microorganisms by a combination of sequence- and function-based screening. This protocol can be adapted to discover other plastic hydrolases and in general for other enzymes, for which not many characterized specimens are yet available.
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Affiliation(s)
- Pablo Pérez-García
- Department of Microbiology and Biotechnology, University of Hamburg, Hamburg, Germany
| | - Dominik Danso
- Department of Microbiology and Biotechnology, University of Hamburg, Hamburg, Germany
| | - Hongli Zhang
- Department of Microbiology and Biotechnology, University of Hamburg, Hamburg, Germany
| | - Jennifer Chow
- Department of Microbiology and Biotechnology, University of Hamburg, Hamburg, Germany
| | - Wolfgang R Streit
- Department of Microbiology and Biotechnology, University of Hamburg, Hamburg, Germany.
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19
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Maurya A, Bhattacharya A, Khare SK. Enzymatic Remediation of Polyethylene Terephthalate (PET)-Based Polymers for Effective Management of Plastic Wastes: An Overview. Front Bioeng Biotechnol 2020; 8:602325. [PMID: 33330434 PMCID: PMC7710609 DOI: 10.3389/fbioe.2020.602325] [Citation(s) in RCA: 58] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Accepted: 10/27/2020] [Indexed: 11/13/2022] Open
Abstract
Globally, plastic-based pollution is now recognized as one of the serious threats to the environment. Among different plastics, polyethylene terephthalate (PET) occupies a pivotal place, its excess presence as a waste is a major environmental concern. Mechanical, thermal, and chemical-based treatments are generally used to manage PET pollution. However, these methods are usually expensive or generate secondary pollutants. Hence, there is a need for a cost-effective and environment-friendly method for efficient management of PET-based plastic wastes. Considering this, enzymatic treatment or recycling is one of the important methods to curb PET pollution. In this regard, PET hydrolases have been explored for the treatment of PET wastes. These enzymes act on PET and end its breakdown into monomeric units and subsequently results in loss of weight. However, various factors, specifically PET crystallinity, temperature, and pH, are known to affect this enzymatic process. For effective hydrolysis of PET, high temperature is required, which facilitates easy accessibility of substrate (PET) to enzymes. However, to function at this high temperature, there is a requirement of thermostable enzymes. The thermostability could be enhanced using glycosylation, immobilization, and enzyme engineering. Furthermore, the use of surfactants, additives such as Ca2+, Mg2+, and hydrophobins (cysteine-rich proteins), has also been reported to enhance the enzymatic PET hydrolysis through facilitating easy accessibility of PET polymers. The present review encompasses a brief overview of the use of enzymes toward the management of PET wastes. Various methods affecting the treatment process and different constraints arising thereof are also systematically highlighted in the review.
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Affiliation(s)
- Ankita Maurya
- Enzyme and Microbial Biochemistry Laboratory, Department of Chemistry, Indian Institute of Technology Delhi, New Delhi, India
| | - Amrik Bhattacharya
- Enzyme and Microbial Biochemistry Laboratory, Department of Chemistry, Indian Institute of Technology Delhi, New Delhi, India
| | - Sunil Kumar Khare
- Enzyme and Microbial Biochemistry Laboratory, Department of Chemistry, Indian Institute of Technology Delhi, New Delhi, India
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20
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Xi X, Ni K, Hao H, Shang Y, Zhao B, Qian Z. Secretory expression in Bacillus subtilis and biochemical characterization of a highly thermostable polyethylene terephthalate hydrolase from bacterium HR29. Enzyme Microb Technol 2020; 143:109715. [PMID: 33375975 DOI: 10.1016/j.enzmictec.2020.109715] [Citation(s) in RCA: 50] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Revised: 11/09/2020] [Accepted: 11/17/2020] [Indexed: 02/07/2023]
Abstract
The environmental threat posed by disposal of plastic wastes has drawn extensive attention in recent years wherein polyethylene terephthalate (PET) constitutes one of the major plastic materials in the wastes. Recycling of PET wastes into reusable materials effectively overcomes its accumulation in the environment and can be achieved by mechanical, chemical, and biological processes. In comparison to the other methods, enzymatic treatment utilizing PET hydrolyzing enzymes (PETases) is environmental-friendly which avoids the use of hazardous chemicals. In this study, we report on the secretory expression in Bacillus subtilis a PETase (BhrPETase) from the bacterium HR29, a close homologue of the leaf-branch compost cutinase (LCC) with 94 % sequence identity. The expression titer of BhrPETase reached 0.66 g/L in an engineered chaperone-overexpression Bacillus subtilis strain, and the biochemical characterization of BhrPETase for the first time revealed its high hydrolyzing activity towards amorphous PET in comparison to two reported PET hydrolyzing enzymes LCC and IsPETase, which were expressed under the same expression conditions in Bacillus subtilis in our study. Most intriguingly, purified BhrPETase displayed a melting temperature as high as 101 °C. To our knowledge it is the most thermostable bacterial PETase characterized so far. The superior activity and thermostability of BhrPETase rendered it one of the most promising PETases for plastic waste recycling and bioremediation applications in the future.
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Affiliation(s)
- Xingxiang Xi
- School of Pharmacy, Shanghai Jiao Tong University, Shanghai, 200240, China; China Research Center, DuPont Nutrition & Biosciences, Shanghai, 200335, China
| | - Kefeng Ni
- China Research Center, DuPont Nutrition & Biosciences, Shanghai, 200335, China
| | - Helong Hao
- China Research Center, DuPont Nutrition & Biosciences, Shanghai, 200335, China
| | - Yuepeng Shang
- China Research Center, DuPont Nutrition & Biosciences, Shanghai, 200335, China
| | - Bo Zhao
- School of Pharmacy, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Zhen Qian
- China Research Center, DuPont Nutrition & Biosciences, Shanghai, 200335, China.
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21
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Jena AB, Samal RR, Kumari K, Pradhan J, Chainy GBN, Subudhi U, Pal S, Dandapat J. The benzene metabolite p-benzoquinone inhibits the catalytic activity of bovine liver catalase: A biophysical study. Int J Biol Macromol 2020; 167:871-880. [PMID: 33181220 DOI: 10.1016/j.ijbiomac.2020.11.044] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Revised: 11/06/2020] [Accepted: 11/06/2020] [Indexed: 01/06/2023]
Abstract
The current communication reports the inhibitory effect of para-benzoquinone (p-BQ) on the structure and function of bovine liver catalase (BLC), a vital antioxidant enzyme. Both BLC and p-BQ were dissolved in respective buffers and the biophysical interaction was studied at physiological concentrations. For the first time our data reveals an enthalpy-driven interaction between BLC and p-BQ which is due to hydrogen bonding and van der Waals interactions. The binding affinity of p-BQ with BLC is nearly 2.5 folds stronger in MOPS buffer than Phosphate buffer. Importantly, the binding affinity between BLC and p-BQ was weak in HEPES buffer as compared to other buffers being the strongest in Tris buffer. Molecular docking studies reveal that binding affinity of p-BQ with BLC differ depending upon the nature of buffers rather than on the participating amino acid residues of BLC. This is further supported by the differential changes in secondary structures of BLC. The p-BQ-induced conformational change in BLC was evident from the reduced BLC activity in presence of different buffers in the following order, Phosphate>MOPS>Tris>HEPES. The absorbance peak of BLC was gradually increased and fluorescence spectra of BLC were drastically decreased when BLC to p-BQ molar ratio was incrementally enhanced from 0 to 10,000 times in presence of all buffers. Nevertheless, the declined activity of BLC was positively correlated with the reduced fluorescence and negatively correlated with the enhanced absorbance. Electrochemical study with cyclic voltammeter also suggests a direct binding of p-BQ with BLC in presence of different buffers. Thus, p-BQ-mediated altered secondary structure in BLC results into compromised activity of BLC.
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Affiliation(s)
- Atala B Jena
- Centre of Excellence in Integrated Omics & Computational Biology, Utkal University, Bhubaneswar 751004, Odisha, India
| | - Rashmi R Samal
- CSIR-Institute of Minerals & Materials Technology, Bhubaneswar 751013, Odisha, India; Academy of Scientific & Innovative Research (AcSIR), New Delhi 110025, India
| | - Kanchan Kumari
- CSIR-Institute of Minerals & Materials Technology, Bhubaneswar 751013, Odisha, India
| | - Jyotsnarani Pradhan
- Post Graduate Department of Biotechnology, Utkal University, Bhubaneswar 751004, Odisha, India
| | - Gagan B N Chainy
- Post Graduate Department of Biotechnology, Utkal University, Bhubaneswar 751004, Odisha, India
| | - Umakanta Subudhi
- CSIR-Institute of Minerals & Materials Technology, Bhubaneswar 751013, Odisha, India; Academy of Scientific & Innovative Research (AcSIR), New Delhi 110025, India.
| | - Satyanarayan Pal
- Post Graduate Department of Chemistry, Utkal University, Bhubaneswar 751004, Odisha, India
| | - Jagnehswar Dandapat
- Centre of Excellence in Integrated Omics & Computational Biology, Utkal University, Bhubaneswar 751004, Odisha, India; Post Graduate Department of Biotechnology, Utkal University, Bhubaneswar 751004, Odisha, India.
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22
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Carniel A, Gomes ADC, Coelho MAZ, de Castro AM. Process strategies to improve biocatalytic depolymerization of post-consumer PET packages in bioreactors, and investigation on consumables cost reduction. Bioprocess Biosyst Eng 2020; 44:507-516. [PMID: 33111179 DOI: 10.1007/s00449-020-02461-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Accepted: 10/07/2020] [Indexed: 11/28/2022]
Abstract
Massive plastics production has raised concerns about low recycling rates and disposal of these materials in nature, causing environmental and economic impacts. Poly(ethylene terephthalate) (PET) is one of main polymers used for manufacture of plastic packaging (e.g. bottles, trays). Enzymatic recycling of PET has been a route of increasing study aiming at to recover its monomers (terephthalic acid and ethylene glycol), resulting in a circular production chain. In this study, investigation of pH control and fractionation of enzyme feeding were explored in post-consumed PET (PC-PET) hydrolysis reactions catalyzed by Humicola insolens cutinase (HiC) in stirred reactors. It was found that the unbuffered reaction provided of pH control by 0.5 M NaOH addition showed 2.39-fold improvement in the released monomers (to a total of 26.3 mM), comparatively to the Tris-HCl-buffered reaction. In addition, it was observed a possibility of reducing the enzyme loading used in the process by half, leading to an increase of 2.41-fold in the specific terephthalic acid concentration released per protein amount, whilst maintaining a high products concentration (97 mM). A simplified cost analysis of reaction consumables was performed, and the data reported here demonstrates that these alternative process strategies contribute to costs reduction on the enzymatic depolymerization reactions of PET.
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Affiliation(s)
- Adriano Carniel
- Falcão Bauer, R. Aquinos, 111. Água Branca, São Paulo, 05036‑070, Brazil.,Department of Biochemical Engineering, Escola de Química, Universidade Federal do Rio de Janeiro, Ilha do Fundão, Rio de Janeiro, 21949-900, Brazil
| | - Absai da Conceição Gomes
- Biotechnology Division, Research and Development Center, PETROBRAS, Av. Horácio Macedo, 950, Ilha do Fundão, Rio de Janeiro, 21941‑915, Brazil
| | - Maria Alice Zarur Coelho
- Department of Biochemical Engineering, Escola de Química, Universidade Federal do Rio de Janeiro, Ilha do Fundão, Rio de Janeiro, 21949-900, Brazil
| | - Aline Machado de Castro
- Biotechnology Division, Research and Development Center, PETROBRAS, Av. Horácio Macedo, 950, Ilha do Fundão, Rio de Janeiro, 21941‑915, Brazil.
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23
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Gan Z, Zhang H. PMBD: a Comprehensive Plastics Microbial Biodegradation Database. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2020; 2019:5625879. [PMID: 31738435 PMCID: PMC6859810 DOI: 10.1093/database/baz119] [Citation(s) in RCA: 49] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/05/2019] [Revised: 09/11/2019] [Accepted: 09/13/2019] [Indexed: 12/21/2022]
Abstract
Since the invention over a hundred years ago, plastics have been used in many applications, and they are involved in every aspect of our lives. The extensive usage of plastics results in a tremendous amount of waste, which has become a severe burden on the environment. Several degradation approaches exist in nature to cope with ever-increasing plastic waste. Among these approaches, biodegradation by microorganisms has emerged as a natural way, which is favored by many environmentally conscious societies. To facilitate the study on biodegradation of plastics, we developed an online resource, Plastics Microbial Biodegradation Database (PMBD), to gather and present the information about microbial biodegradation of plastics. In this database, 949 microorganisms–plastics relationships and 79 genes involved in the biodegradation of plastics were manually collected and confirmed through literature searching. In addition, more than 8000 automatically annotated enzyme sequences, which were predicted to be involved in the plastics biodegradation, were extracted from the TrEMBL section of the UniProt database. The PMBD database is presented with a website at http://pmbd.genome-mining.cn/home. Data may be accessed through browsing or searching. Also included on the website are a sequence alignment tool and a function prediction tool.
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Affiliation(s)
- Zhiqiang Gan
- Department of Biotechnology, College of Life Science, Huazhong University of Science and Technology,
| | - Houjin Zhang
- Key Laboratory of Molecular Biophysics, Ministry of Education, Wuhan, Hubei, China
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24
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Falkenstein P, Gräsing D, Bielytskyi P, Zimmermann W, Matysik J, Wei R, Song C. UV Pretreatment Impairs the Enzymatic Degradation of Polyethylene Terephthalate. Front Microbiol 2020; 11:689. [PMID: 32411102 PMCID: PMC7199389 DOI: 10.3389/fmicb.2020.00689] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Accepted: 03/25/2020] [Indexed: 11/27/2022] Open
Abstract
The biocatalytic degradation of polyethylene terephthalate (PET) emerged recently as a promising alternative plastic recycling method. However, limited activity of previously known enzymes against post-consumer PET materials still prevents the application on an industrial scale. In this study, the influence of ultraviolet (UV) irradiation as a potential pretreatment method for the enzymatic degradation of PET was investigated. Attenuated total reflection Fourier transform infrared (ATR-FTIR) and 1H solution nuclear magnetic resonance (NMR) analysis indicated a shortening of the polymer chains of UV-treated PET due to intra-chain scissions. The degradation of UV-treated PET films by a polyester hydrolase resulted in significantly lower weight losses compared to the untreated sample. We also examined site-specific and segmental chain dynamics over a time scale of sub-microseconds to seconds using centerband-only detection of exchange, rotating-frame spin-lattice relaxation (T1ρ), and dipolar chemical shift correlation experiments which revealed an overall increase in the chain rigidity of the UV-treated sample. The observed dynamic changes are most likely associated with the increased crystallinity of the surface, where a decreased accessibility for the enzyme-catalyzed hydrolysis was found. Moreover, our NMR study provided further knowledge on how polymer chain conformation and dynamics of PET can mechanistically influence the enzymatic degradation.
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Affiliation(s)
| | - Daniel Gräsing
- Institut für Analytische Chemie, Universität Leipzig, Leipzig, Germany
| | - Pavlo Bielytskyi
- Institut für Analytische Chemie, Universität Leipzig, Leipzig, Germany
| | | | - Jörg Matysik
- Institut für Analytische Chemie, Universität Leipzig, Leipzig, Germany
| | - Ren Wei
- Institut für Biochemie, Universität Leipzig, Leipzig, Germany
| | - Chen Song
- Institut für Analytische Chemie, Universität Leipzig, Leipzig, Germany
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25
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Adıgüzel AO. Production and characterization of thermo-, halo- and solvent-stable esterase from Bacillus mojavensis TH309. BIOCATAL BIOTRANSFOR 2020. [DOI: 10.1080/10242422.2020.1715370] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Ali Osman Adıgüzel
- Department of Molecular Biology and Genetics, Science and Letter Faculty, University of Ondokuz Mayıs, Samsun, Turkey
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26
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Conformational fitting of a flexible oligomeric substrate does not explain the enzymatic PET degradation. Nat Commun 2019; 10:5581. [PMID: 31811142 PMCID: PMC6897938 DOI: 10.1038/s41467-019-13492-9] [Citation(s) in RCA: 66] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2018] [Accepted: 11/04/2019] [Indexed: 01/19/2023] Open
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27
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Castro AMD, Carniel A, Stahelin D, Chinelatto Junior LS, Honorato HDA, de Menezes SMC. High-fold improvement of assorted post-consumer poly(ethylene terephthalate) (PET) packages hydrolysis using Humicola insolens cutinase as a single biocatalyst. Process Biochem 2019. [DOI: 10.1016/j.procbio.2019.03.006] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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28
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Abstract
Cutinases are α/β hydrolases, and their role in nature is the degradation of cutin. Such enzymes are usually produced by phytopathogenic microorganisms in order to penetrate their hosts. The first focused studies on cutinases started around 50 years ago. Since then, numerous cutinases have been isolated and characterized, aiming at the elucidation of their structure–function relations. Our deeper understanding of cutinases determines the applications by which they could be utilized; from food processing and detergents, to ester synthesis and polymerizations. However, cutinases are mainly efficient in the degradation of polyesters, a natural function. Therefore, these enzymes have been successfully applied for the biodegradation of plastics, as well as for the delicate superficial hydrolysis of polymeric materials prior to their functionalization. Even though research on this family of enzymes essentially began five decades ago, they are still involved in many reports; novel enzymes are being discovered, and new fields of applications arise, leading to numerous related publications per year. Perhaps the future of cutinases lies in their evolved descendants, such as polyesterases, and particularly PETases. The present article reviews the biochemical and structural characteristics of cutinases and cutinase-like hydrolases, and their applications in the field of bioremediation and biocatalysis.
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29
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De Hoe GX, Zumstein MT, Tiegs BJ, Brutman JP, McNeill K, Sander M, Coates GW, Hillmyer MA. Sustainable Polyester Elastomers from Lactones: Synthesis, Properties, and Enzymatic Hydrolyzability. J Am Chem Soc 2018; 140:963-973. [DOI: 10.1021/jacs.7b10173] [Citation(s) in RCA: 73] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Guilhem X. De Hoe
- Department
of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Michael T. Zumstein
- Department
of Environmental Systems Science, Institute of Biogeochemistry and
Pollutant Dynamics, Swiss Federal Institute of Technology (ETH) Zurich, 8092 Zürich, Switzerland
| | - Brandon J. Tiegs
- Department
of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York 14853-1301, United States
| | - Jacob P. Brutman
- Department
of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Kristopher McNeill
- Department
of Environmental Systems Science, Institute of Biogeochemistry and
Pollutant Dynamics, Swiss Federal Institute of Technology (ETH) Zurich, 8092 Zürich, Switzerland
| | - Michael Sander
- Department
of Environmental Systems Science, Institute of Biogeochemistry and
Pollutant Dynamics, Swiss Federal Institute of Technology (ETH) Zurich, 8092 Zürich, Switzerland
| | - Geoffrey W. Coates
- Department
of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York 14853-1301, United States
| | - Marc A. Hillmyer
- Department
of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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30
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Wei R, Zimmermann W. Microbial enzymes for the recycling of recalcitrant petroleum-based plastics: how far are we? Microb Biotechnol 2017; 10:1308-1322. [PMID: 28371373 PMCID: PMC5658625 DOI: 10.1111/1751-7915.12710] [Citation(s) in RCA: 336] [Impact Index Per Article: 48.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Revised: 03/02/2017] [Accepted: 03/06/2017] [Indexed: 01/25/2023] Open
Abstract
Petroleum-based plastics have replaced many natural materials in their former applications. With their excellent properties, they have found widespread uses in almost every area of human life. However, the high recalcitrance of many synthetic plastics results in their long persistence in the environment, and the growing amount of plastic waste ending up in landfills and in the oceans has become a global concern. In recent years, a number of microbial enzymes capable of modifying or degrading recalcitrant synthetic polymers have been identified. They are emerging as candidates for the development of biocatalytic plastic recycling processes, by which valuable raw materials can be recovered in an environmentally sustainable way. This review is focused on microbial biocatalysts involved in the degradation of the synthetic plastics polyethylene, polystyrene, polyurethane and polyethylene terephthalate (PET). Recent progress in the application of polyester hydrolases for the recovery of PET building blocks and challenges for the application of these enzymes in alternative plastic waste recycling processes will be discussed.
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Affiliation(s)
- Ren Wei
- Department of Microbiology and Bioprocess TechnologyInstitute of BiochemistryLeipzig UniversityJohannisallee 21‐2304103LeipzigGermany
| | - Wolfgang Zimmermann
- Department of Microbiology and Bioprocess TechnologyInstitute of BiochemistryLeipzig UniversityJohannisallee 21‐2304103LeipzigGermany
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31
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32
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Wang Y, Shu T, Fan P, Zhang H, Turunen O, Xiong H, Yu L. Characterization of a recombinant alkaline thermostable β-mannanase and its application in eco-friendly ramie degumming. Process Biochem 2017. [DOI: 10.1016/j.procbio.2017.06.008] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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33
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de Castro AM, Carniel A, Nicomedes Junior J, da Conceição Gomes A, Valoni É. Screening of commercial enzymes for poly(ethylene terephthalate) (PET) hydrolysis and synergy studies on different substrate sources. ACTA ACUST UNITED AC 2017; 44:835-844. [DOI: 10.1007/s10295-017-1942-z] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2016] [Accepted: 03/31/2017] [Indexed: 11/30/2022]
Abstract
Abstract
Poly(ethylene terephthalate) (PET) is one of the most consumed plastics in the world. The development of efficient technologies for its depolymerization for monomers reuse is highly encouraged, since current recycling rates are still very low. In this study, 16 commercial lipases and cutinases were evaluated for their abilities to catalyze the hydrolysis of two PET samples. Humicola insolens cutinase showed the best performance and was then used in reactions on other PET sources, solely or in combination with the efficient mono(hydroxyethyl terephthalate)-converting lipase from Candida antarctica. Synergy degrees of the final titers of up to 2.2 (i.e., more than double of the concentration when both enzymes were used, as compared to their use alone) were found, with increased terephthalic acid formation rates, reaching a maximum of 59,989 µmol/L (9.36 g/L). These findings open up new possibilities for the conversion of post-consumer PET packages into their minimal monomers, which can be used as drop in at existing industrial facilities.
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Affiliation(s)
- Aline Machado de Castro
- 0000 0001 2192 4294 grid.423526.4 Biotechnology Division, Research and Development Center PETROBRAS Av. Horácio Macedo, 950. Ilha do Fundão 21941-915 Rio de Janeiro Brazil
| | - Adriano Carniel
- Falcão Bauer R. Aquinos111. Água Branca 05036-070 São Paulo Brazil
| | - José Nicomedes Junior
- 0000 0001 2192 4294 grid.423526.4 Biotechnology Division, Research and Development Center PETROBRAS Av. Horácio Macedo, 950. Ilha do Fundão 21941-915 Rio de Janeiro Brazil
| | - Absai da Conceição Gomes
- 0000 0001 2192 4294 grid.423526.4 Biotechnology Division, Research and Development Center PETROBRAS Av. Horácio Macedo, 950. Ilha do Fundão 21941-915 Rio de Janeiro Brazil
| | - Érika Valoni
- 0000 0001 2192 4294 grid.423526.4 Biotechnology Division, Research and Development Center PETROBRAS Av. Horácio Macedo, 950. Ilha do Fundão 21941-915 Rio de Janeiro Brazil
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34
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Gamerith C, Vastano M, Ghorbanpour SM, Zitzenbacher S, Ribitsch D, Zumstein MT, Sander M, Herrero Acero E, Pellis A, Guebitz GM. Enzymatic Degradation of Aromatic and Aliphatic Polyesters by P. pastoris Expressed Cutinase 1 from Thermobifida cellulosilytica. Front Microbiol 2017; 8:938. [PMID: 28596765 PMCID: PMC5443175 DOI: 10.3389/fmicb.2017.00938] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Accepted: 05/09/2017] [Indexed: 11/13/2022] Open
Abstract
To study hydrolysis of aromatic and aliphatic polyesters cutinase 1 from Thermobifida cellulosilytica (Thc_Cut1) was expressed in P. pastoris. No significant differences between the expression of native Thc_Cut1 and of two glycosylation site knock out mutants (Thc_Cut1_koAsn and Thc_Cut1_koST) concerning the total extracellular protein concentration and volumetric activity were observed. Hydrolysis of poly(ethylene terephthalate) (PET) was shown for all three enzymes based on quantification of released products by HPLC and similar concentrations of released terephthalic acid (TPA) and mono(2-hydroxyethyl) terephthalate (MHET) were detected for all enzymes. Both tested aliphatic polyesters poly(butylene succinate) (PBS) and poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) were hydrolyzed by Thc_Cut1 and Thc_Cut1_koST, although PBS was hydrolyzed to significantly higher extent than PHBV. These findings were also confirmed via quartz crystal microbalance (QCM) analysis; for PHBV only a small mass change was observed while the mass of PBS thin films decreased by 93% upon enzymatic hydrolysis with Thc_Cut1. Although both enzymes led to similar concentrations of released products upon hydrolysis of PET and PHBV, Thc_Cut1_koST was found to be significantly more active on PBS than the native Thc_Cut1. Hydrolysis of PBS films by Thc_Cut1 and Thc_Cut1_koST was followed by weight loss and scanning electron microscopy (SEM). Within 96 h of hydrolysis up to 92 and 41% of weight loss were detected with Thc_Cut1_koST and Thc_Cut1, respectively. Furthermore, SEM characterization of PBS films clearly showed that enzyme tretment resulted in morphological changes of the film surface.
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Affiliation(s)
| | - Marco Vastano
- Institute of Environmental Biotechnology, University of Natural Resources and Life Sciences ViennaTulln, Austria.,Dipartimento di Scienze Chimiche, Universita degli Studi di Napoli Federico IINaples, Italy
| | - Sahar M Ghorbanpour
- Institute of Environmental Biotechnology, University of Natural Resources and Life Sciences ViennaTulln, Austria
| | | | - Doris Ribitsch
- Austrian Centre of Industrial BiotechnologyTulln, Austria.,Institute of Environmental Biotechnology, University of Natural Resources and Life Sciences ViennaTulln, Austria
| | - Michael T Zumstein
- Institute of Biogeochemistry and Pollutant Dynamics, ETH ZurichZurich, Switzerland
| | - Michael Sander
- Institute of Biogeochemistry and Pollutant Dynamics, ETH ZurichZurich, Switzerland
| | | | - Alessandro Pellis
- Institute of Environmental Biotechnology, University of Natural Resources and Life Sciences ViennaTulln, Austria
| | - Georg M Guebitz
- Austrian Centre of Industrial BiotechnologyTulln, Austria.,Institute of Environmental Biotechnology, University of Natural Resources and Life Sciences ViennaTulln, Austria
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35
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Wei R, Zimmermann W. Biocatalysis as a green route for recycling the recalcitrant plastic polyethylene terephthalate. Microb Biotechnol 2017; 10:1302-1307. [PMID: 28401691 PMCID: PMC5658586 DOI: 10.1111/1751-7915.12714] [Citation(s) in RCA: 148] [Impact Index Per Article: 21.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2016] [Revised: 03/16/2017] [Accepted: 03/16/2017] [Indexed: 01/26/2023] Open
Abstract
Biocatalysis can enable a closed‐loop recycling of post‐consumer PET waste.
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Affiliation(s)
- Ren Wei
- Department of Microbiology and Bioprocess Technology, Institute of Biochemistry, Leipzig University, Johannisallee 21-23, 04103, Leipzig, Germany
| | - Wolfgang Zimmermann
- Department of Microbiology and Bioprocess Technology, Institute of Biochemistry, Leipzig University, Johannisallee 21-23, 04103, Leipzig, Germany
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Degradation of Polyester Polyurethane by Bacterial Polyester Hydrolases. Polymers (Basel) 2017; 9:polym9020065. [PMID: 30970745 PMCID: PMC6431909 DOI: 10.3390/polym9020065] [Citation(s) in RCA: 76] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2016] [Revised: 02/01/2017] [Accepted: 02/10/2017] [Indexed: 11/16/2022] Open
Abstract
Polyurethanes (PU) are widely used synthetic polymers. The growing amount of PU used industrially has resulted in a worldwide increase of plastic wastes. The related environmental pollution as well as the limited availability of the raw materials based on petrochemicals requires novel solutions for their efficient degradation and recycling. The degradation of the polyester PU Impranil DLN by the polyester hydrolases LC cutinase (LCC), TfCut2, Tcur1278 and Tcur0390 was analyzed using a turbidimetric assay. The highest hydrolysis rates were obtained with TfCut2 and Tcur0390. TfCut2 also showed a significantly higher substrate affinity for Impranil DLN than the other three enzymes, indicated by a higher adsorption constant K. Significant weight losses of the solid thermoplastic polyester PU (TPU) Elastollan B85A-10 and C85A-10 were detected as a result of the enzymatic degradation by all four polyester hydrolases. Within a reaction time of 200 h at 70 °C, LCC caused weight losses of up to 4.9% and 4.1% of Elastollan B85A-10 and C85A-10, respectively. Gel permeation chromatography confirmed a preferential degradation of the larger polymer chains. Scanning electron microscopy revealed cracks at the surface of the TPU cubes as a result of enzymatic surface erosion. Analysis by Fourier transform infrared spectroscopy indicated that the observed weight losses were a result of the cleavage of ester bonds of the polyester TPU.
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