1
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Gerasymenko I, Sheludko YV, Navarro Fuertes I, Schmidts V, Steinel L, Haumann E, Warzecha H. Engineering of a Plant Isoprenyl Diphosphate Synthase for Development of Irregular Coupling Activity. Chembiochem 2022; 23:e202100465. [PMID: 34672410 PMCID: PMC9297866 DOI: 10.1002/cbic.202100465] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 10/20/2021] [Indexed: 11/17/2022]
Abstract
We performed mutagenesis on a regular isoprenyl diphosphate synthase (IDS), neryl diphosphate synthase from Solanum lycopersicum (SlNPPS), that has a structurally related analogue performing non-head-to-tail coupling of two dimethylallyl diphosphate (DMAPP) units, lavandulyl diphosphate synthase from Lavandula x intermedia (LiLPPS). Wild-type SlNPPS catalyses regular coupling of isopentenyl diphosphate (IPP) and DMAPP in cis-orientation resulting in the formation of neryl diphosphate. However, if the enzyme is fed with DMAPP only, it is able to catalyse the coupling of two DMAPP units and synthesizes two irregular monoterpene diphosphates; their structures were elucidated by the NMR analysis of their dephosphorylation products. One of the alcohols is lavandulol. The second compound is the trans-isomer of planococcol, the first example of an irregular cyclobutane monoterpene with this stereochemical configuration. The irregular activity of SlNPPS constitutes 0.4 % of its regular activity and is revealed only if the enzyme is supplied with DMAPP in the absence of IPP. The exchange of asparagine 88 for histidine considerably enhanced the non-head-to-tail coupling. While still only observed in the absence of IPP, irregular activity of the mutant reaches 13.1 % of its regular activity. The obtained results prove that regular IDS are promising starting points for protein engineering aiming at the development of irregular activities and leading to novel monoterpene structures.
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Affiliation(s)
- Iryna Gerasymenko
- Technische Universität DarmstadtPlant Biotechnology and Metabolic EngineeringSchnittspahnstraße 464287DarmstadtGermany
- Centre for Synthetic BiologyTechnical University of Darmstadt64287DarmstadtGermany
| | - Yuriy V. Sheludko
- Technische Universität DarmstadtPlant Biotechnology and Metabolic EngineeringSchnittspahnstraße 464287DarmstadtGermany
- Centre for Synthetic BiologyTechnical University of Darmstadt64287DarmstadtGermany
- Clemens-Schöpf-Institut für Organische Chemie und BiochemieTechnische Universität DarmstadtAlarich-Weiss-Str. 464287DarmstadtGermany
| | | | - Volker Schmidts
- Clemens-Schöpf-Institut für Organische Chemie und BiochemieTechnische Universität DarmstadtAlarich-Weiss-Str. 464287DarmstadtGermany
| | - Lara Steinel
- Technische Universität DarmstadtPlant Biotechnology and Metabolic EngineeringSchnittspahnstraße 464287DarmstadtGermany
- Centre for Synthetic BiologyTechnical University of Darmstadt64287DarmstadtGermany
| | - Elisabeth Haumann
- Technische Universität DarmstadtPlant Biotechnology and Metabolic EngineeringSchnittspahnstraße 464287DarmstadtGermany
- Centre for Synthetic BiologyTechnical University of Darmstadt64287DarmstadtGermany
| | - Heribert Warzecha
- Technische Universität DarmstadtPlant Biotechnology and Metabolic EngineeringSchnittspahnstraße 464287DarmstadtGermany
- Centre for Synthetic BiologyTechnical University of Darmstadt64287DarmstadtGermany
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2
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Thirupathi G, Ashok E, Suresh Kumar A, Ramachary DB. Parts-per-Million-Level, Catalytic [3+2]-Annulations for the Asymmetric Synthesis of Methanobenzo[7]annulenes. Chemistry 2021; 27:18033-18038. [PMID: 34677886 DOI: 10.1002/chem.202103254] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Indexed: 12/11/2022]
Abstract
3-Alkyl-lawsones selectively reacted with α-alkyl-nitroethylenes under 500 parts-per-million (ppm) quinine-NH-thiourea-catalysis to furnish the chiral methanobenzo[7]annulenes in up to >99 % ee with >20 : 1 dr and TON up to 1820 through tandem Michael/Henry [3+2]-annulations. These asymmetric ppm-level, catalytic tandem [3+2]-annulations would be highly inspirational for the design of many more ppm-level organocatalytic reactions, and at the same time these final molecules are basic skeletons of antibiotics.
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Affiliation(s)
- Guguloth Thirupathi
- Catalysis Laboratory, School of Chemistry, University of Hyderabad, Hyderabad, 500 046, India
| | - Etikala Ashok
- Catalysis Laboratory, School of Chemistry, University of Hyderabad, Hyderabad, 500 046, India
| | - A Suresh Kumar
- Catalysis Laboratory, School of Chemistry, University of Hyderabad, Hyderabad, 500 046, India
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3
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Abstract
The Pd-catalyzed carbon-carbon bond formation pioneered by Heck in 1969 has dominated medicinal chemistry development for the ensuing fifty years. As the demand for more complex three-dimensional active pharmaceuticals continues to increase, preparative enzyme-mediated assembly, by virtue of its exquisite selectivity and sustainable nature, is poised to provide a practical and affordable alternative for accessing such compounds. In this minireview, we summarize recent state-of-the-art developments in practical enzyme-mediated assembly of carbocycles. When appropriate, background information on the enzymatic transformation is provided and challenges and/or limitations are also highlighted.
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Affiliation(s)
- Weijin Wang
- Department of Chemistry, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL, 33458, USA
| | - Douglass F Taber
- Department of Chemistry, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL, 33458, USA
| | - Hans Renata
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA
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4
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Peraka S, Pasha MA, Thirupathi G, Ramachary DB. Organocatalytic Formal Intramolecular [3+2]‐Cycloaddition to Acquire Biologically Important Methanodibenzo[
a,f
]azulenes and Methanobenzo[
f
]azulenes. Chemistry 2019; 25:14036-14041. [DOI: 10.1002/chem.201902453] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Revised: 08/11/2019] [Indexed: 12/23/2022]
Affiliation(s)
- Swamy Peraka
- Catalysis LaboratorySchool of ChemistryUniversity of Hyderabad Hyderabad 500 046 India
| | - Mohammed Anif Pasha
- Catalysis LaboratorySchool of ChemistryUniversity of Hyderabad Hyderabad 500 046 India
| | - Guguloth Thirupathi
- Catalysis LaboratorySchool of ChemistryUniversity of Hyderabad Hyderabad 500 046 India
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5
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Abstract
Enzyme-mediated cascade reactions are widespread in biosynthesis. To facilitate comparison with the mechanistic categorizations of cascade reactions by synthetic chemists and delineate the common underlying chemistry, we discuss four types of enzymatic cascade reactions: those involving nucleophilic, electrophilic, pericyclic, and radical reactions. Two subtypes of enzymes that generate radical cascades exist at opposite ends of the oxygen abundance spectrum. Iron-based enzymes use O2 to generate high valent iron-oxo species to homolyze unactivated C-H bonds in substrates to initiate skeletal rearrangements. At anaerobic end, enzymes reversibly cleave S-adenosylmethionine (SAM) to generate the 5'-deoxyadenosyl radical as a powerful oxidant to initiate C-H bond homolysis in bound substrates. The latter enzymes are termed radical SAM enzymes. We categorize the former as "thwarted oxygenases".
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Affiliation(s)
- Christopher T Walsh
- Stanford University Chemistry, Engineering, and Medicine for Human Health (CheM-H), Stanford University, Stanford, CA, 94305, USA
| | - Bradley S Moore
- Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, 92093, USA
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, 92093, USA
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6
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Affiliation(s)
- Christopher T. Walsh
- Stanford University Chemistry, Engineering, and Medicine for Human Health (CheM-H)Stanford University Stanford CA 94305 USA
| | - Bradley S. Moore
- Center for Marine Biotechnology and BiomedicineScripps Institution of OceanographyUniversity of California, San Diego La Jolla CA 92093 USA
- Skaggs School of Pharmacy and Pharmaceutical SciencesUniversity of California, San Diego La Jolla CA 92093 USA
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7
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Brandstätter M, Freis M, Huwyler N, Carreira EM. Total Synthesis of (−)‐Merochlorin A. Angew Chem Int Ed Engl 2019; 58:2490-2494. [DOI: 10.1002/anie.201813090] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2018] [Indexed: 01/07/2023]
Affiliation(s)
- Marco Brandstätter
- Laboratorium für Organische Chemie, HCI H335Eidgenössiche Technische Hochschule Zürich Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| | - Manuel Freis
- Laboratorium für Organische Chemie, HCI H335Eidgenössiche Technische Hochschule Zürich Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| | - Nikolas Huwyler
- Laboratorium für Organische Chemie, HCI H335Eidgenössiche Technische Hochschule Zürich Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| | - Erick M. Carreira
- Laboratorium für Organische Chemie, HCI H335Eidgenössiche Technische Hochschule Zürich Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
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8
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Brandstätter M, Freis M, Huwyler N, Carreira EM. Total Synthesis of (−)-Merochlorin A. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201813090] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Marco Brandstätter
- Laboratorium für Organische Chemie, HCI H335; Eidgenössiche Technische Hochschule Zürich; Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| | - Manuel Freis
- Laboratorium für Organische Chemie, HCI H335; Eidgenössiche Technische Hochschule Zürich; Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| | - Nikolas Huwyler
- Laboratorium für Organische Chemie, HCI H335; Eidgenössiche Technische Hochschule Zürich; Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| | - Erick M. Carreira
- Laboratorium für Organische Chemie, HCI H335; Eidgenössiche Technische Hochschule Zürich; Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
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9
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Kobayashi M, Kuzuyama T. Structural and Mechanistic Insight into Terpene Synthases that Catalyze the Irregular Non‐Head‐to‐Tail Coupling of Prenyl Substrates. Chembiochem 2018; 20:29-33. [DOI: 10.1002/cbic.201800510] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Indexed: 01/08/2023]
Affiliation(s)
- Masaya Kobayashi
- Biotechnology Research CenterThe University of Tokyo 1-1-1 Yayoi Bunkyo-ku Tokyo 113-8657 Japan
| | - Tomohisa Kuzuyama
- Biotechnology Research CenterThe University of Tokyo 1-1-1 Yayoi Bunkyo-ku Tokyo 113-8657 Japan
- Collaborative Research Institute for Innovative MicrobiologyThe University of Tokyo 1-1-1 Yayoi Bunkyo-ku Tokyo 113-8657 Japan
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10
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Meng S, Tang GL, Pan HX. Enzymatic Formation of Oxygen-Containing Heterocycles in Natural Product Biosynthesis. Chembiochem 2018; 19:2002-2022. [PMID: 30039582 DOI: 10.1002/cbic.201800225] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Indexed: 01/12/2023]
Abstract
Oxygen-containing heterocycles are widely encountered in natural products that display diverse pharmacological properties and have potential benefits to human health. The formation of O-heterocycles catalyzed by different types of enzymes in the biosynthesis of natural products not only contributes to the structural diversity of these compounds, but also enriches our understanding of nature's ability to construct complex molecules. This minireview focuses on the various modes of enzymatic O-heterocyclization identified in natural product biosynthesis and summarizes the possible mechanisms involved in ring closure.
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Affiliation(s)
- Song Meng
- State Key Laboratory of Bio-organic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, University of the Chinese Academy of Sciences, 345 Lingling Road, Shanghai, 200032, China
| | - Gong-Li Tang
- State Key Laboratory of Bio-organic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, University of the Chinese Academy of Sciences, 345 Lingling Road, Shanghai, 200032, China
| | - Hai-Xue Pan
- State Key Laboratory of Bio-organic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, University of the Chinese Academy of Sciences, 345 Lingling Road, Shanghai, 200032, China
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11
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Murray LAM, McKinnie SMK, Pepper HP, Erni R, Miles ZD, Cruickshank MC, López-Pérez B, Moore BS, George JH. Total Synthesis Establishes the Biosynthetic Pathway to the Naphterpin and Marinone Natural Products. Angew Chem Int Ed Engl 2018; 57:11009-11014. [PMID: 29935040 PMCID: PMC6248334 DOI: 10.1002/anie.201804351] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2018] [Indexed: 01/18/2023]
Abstract
The naphterpins and marinones are naphthoquinone meroterpenoids with an unusual aromatic oxidation pattern that is biosynthesized from 1,3,6,8-tetrahydroxynaphthalene (THN). We propose that cryptic halogenation of THN derivatives by vanadium-dependent chloroperoxidase (VCPO) enzymes is key to this biosynthetic pathway, despite the absence of chlorine in these natural products. This speculation inspired a total synthesis to mimic the naphterpin/marinone biosynthetic pathway. In validation of this biogenetic hypothesis, two VCPOs were discovered that interconvert several of the proposed biosynthetic intermediates.
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Affiliation(s)
- Lauren A. M. Murray
- Department of Chemistry, University of Adelaide Adelaide, SA 5005 (Australia)
| | - Shaun M. K. McKinnie
- Center for Marine Biotechnology and Biomedicine Scripps Institution of Oceanograph, University of California, San Diego, La Jolla, CA 92093 (USA) and Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093 (USA)
| | - Henry P. Pepper
- Department of Chemistry, University of Adelaide Adelaide, SA 5005 (Australia)
| | - Reto Erni
- Center for Marine Biotechnology and Biomedicine Scripps Institution of Oceanograph, University of California, San Diego, La Jolla, CA 92093 (USA) and Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093 (USA)
| | - Zachary D. Miles
- Center for Marine Biotechnology and Biomedicine Scripps Institution of Oceanograph, University of California, San Diego, La Jolla, CA 92093 (USA) and Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093 (USA)
| | | | - Borja López-Pérez
- Department of Chemistry, University of Adelaide Adelaide, SA 5005 (Australia)
| | - Bradley S. Moore
- Center for Marine Biotechnology and Biomedicine Scripps Institution of Oceanograph, University of California, San Diego, La Jolla, CA 92093 (USA) and Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093 (USA)
| | - Jonathan H. George
- Department of Chemistry, University of Adelaide Adelaide, SA 5005 (Australia)
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12
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Murray LAM, McKinnie SMK, Pepper HP, Erni R, Miles ZD, Cruickshank MC, López‐Pérez B, Moore BS, George JH. Total Synthesis Establishes the Biosynthetic Pathway to the Naphterpin and Marinone Natural Products. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201804351] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
| | - Shaun M. K. McKinnie
- Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanograph University of California, San Diego La Jolla CA 92093 USA
- Skaggs School of Pharmacy and Pharmaceutical Sciences University of California, San Diego La Jolla CA 92093 USA
| | - Henry P. Pepper
- Department of Chemistry University of Adelaide Adelaide SA 5005 Australia
| | - Reto Erni
- Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanograph University of California, San Diego La Jolla CA 92093 USA
- Skaggs School of Pharmacy and Pharmaceutical Sciences University of California, San Diego La Jolla CA 92093 USA
| | - Zachary D. Miles
- Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanograph University of California, San Diego La Jolla CA 92093 USA
- Skaggs School of Pharmacy and Pharmaceutical Sciences University of California, San Diego La Jolla CA 92093 USA
| | | | - Borja López‐Pérez
- Department of Chemistry University of Adelaide Adelaide SA 5005 Australia
| | - Bradley S. Moore
- Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanograph University of California, San Diego La Jolla CA 92093 USA
- Skaggs School of Pharmacy and Pharmaceutical Sciences University of California, San Diego La Jolla CA 92093 USA
| | - Jonathan H. George
- Department of Chemistry University of Adelaide Adelaide SA 5005 Australia
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13
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Dong J, Fernández‐Fueyo E, Hollmann F, Paul CE, Pesic M, Schmidt S, Wang Y, Younes S, Zhang W. Biocatalytic Oxidation Reactions: A Chemist's Perspective. Angew Chem Int Ed Engl 2018; 57:9238-9261. [PMID: 29573076 PMCID: PMC6099261 DOI: 10.1002/anie.201800343] [Citation(s) in RCA: 276] [Impact Index Per Article: 46.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2018] [Indexed: 01/25/2023]
Abstract
Oxidation chemistry using enzymes is approaching maturity and practical applicability in organic synthesis. Oxidoreductases (enzymes catalysing redox reactions) enable chemists to perform highly selective and efficient transformations ranging from simple alcohol oxidations to stereoselective halogenations of non-activated C-H bonds. For many of these reactions, no "classical" chemical counterpart is known. Hence oxidoreductases open up shorter synthesis routes based on a more direct access to the target products. The generally very mild reaction conditions may also reduce the environmental impact of biocatalytic reactions compared to classical counterparts. In this Review, we critically summarise the most important recent developments in the field of biocatalytic oxidation chemistry and identify the most pressing bottlenecks as well as promising solutions.
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Affiliation(s)
- JiaJia Dong
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
| | - Elena Fernández‐Fueyo
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
| | - Frank Hollmann
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
| | - Caroline E. Paul
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
| | - Milja Pesic
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
| | - Sandy Schmidt
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
| | - Yonghua Wang
- School of Food Science and EngineeringSouth China University of TechnologyGuangzhou510640P. R. China
| | - Sabry Younes
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
| | - Wuyuan Zhang
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
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14
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Dong J, Fernández-Fueyo E, Hollmann F, Paul CE, Pesic M, Schmidt S, Wang Y, Younes S, Zhang W. Biokatalytische Oxidationsreaktionen - aus der Sicht eines Chemikers. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201800343] [Citation(s) in RCA: 84] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- JiaJia Dong
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
| | - Elena Fernández-Fueyo
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
| | - Frank Hollmann
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
| | - Caroline E. Paul
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
| | - Milja Pesic
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
| | - Sandy Schmidt
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
| | - Yonghua Wang
- School of Food Science and Engineering; South China University of Technology; Guangzhou 510640 P. R. China
| | - Sabry Younes
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
| | - Wuyuan Zhang
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
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15
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Gao J, Ko T, Chen L, Malwal SR, Zhang J, Hu X, Qu F, Liu W, Huang J, Cheng Y, Chen C, Yang Y, Zhang Y, Oldfield E, Guo R. “Head‐to‐Middle” and “Head‐to‐Tail”
cis
‐Prenyl Transferases: Structure of Isosesquilavandulyl Diphosphate Synthase. Angew Chem Int Ed Engl 2018; 57:683-687. [DOI: 10.1002/anie.201710185] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2017] [Revised: 11/17/2017] [Indexed: 12/22/2022]
Affiliation(s)
- Jian Gao
- Industrial Enzymes National Engineering LaboratoryTianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 China
| | - Tzu‐Ping Ko
- Institute of Biological ChemistryAcademia Sinica Taipei 11529 Taiwan
| | - Lu Chen
- Department of BiochemistryUniversity of Illinois at Urbana-Champaign Urbana IL 61801 USA
| | - Satish R. Malwal
- Department of ChemistryUniversity of Illinois at Urbana-Champaign Urbana IL 61801 USA
| | - Jianan Zhang
- School of Molecular and Cellular BiologyUniversity of Illinois at Urbana-Champaign Urbana IL 61801 USA
| | - Xiangying Hu
- Industrial Enzymes National Engineering LaboratoryTianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 China
| | - Fiona Qu
- Department of ChemistryUniversity of Illinois at Urbana-Champaign Urbana IL 61801 USA
| | - Weidong Liu
- Industrial Enzymes National Engineering LaboratoryTianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 China
| | - Jian‐Wen Huang
- Industrial Enzymes National Engineering LaboratoryTianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 China
| | - Ya‐Shan Cheng
- Industrial Enzymes National Engineering LaboratoryTianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 China
| | - Chun‐Chi Chen
- Industrial Enzymes National Engineering LaboratoryTianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 China
| | - Yunyun Yang
- School of Pharmaceutical SciencesTsinghua University Beijing 100084 China
| | - Yonghui Zhang
- School of Pharmaceutical SciencesTsinghua University Beijing 100084 China
| | - Eric Oldfield
- Department of ChemistryUniversity of Illinois at Urbana-Champaign Urbana IL 61801 USA
- Center for Biophysics and Quantitative BiologyUniversity of Illinois at Urbana-Champaign Urbana IL 61801 USA
| | - Rey‐Ting Guo
- Industrial Enzymes National Engineering LaboratoryTianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 China
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16
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Gao J, Ko T, Chen L, Malwal SR, Zhang J, Hu X, Qu F, Liu W, Huang J, Cheng Y, Chen C, Yang Y, Zhang Y, Oldfield E, Guo R. “Head‐to‐Middle” and “Head‐to‐Tail”
cis
‐Prenyl Transferases: Structure of Isosesquilavandulyl Diphosphate Synthase. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201710185] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Jian Gao
- Industrial Enzymes National Engineering LaboratoryTianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 China
| | - Tzu‐Ping Ko
- Institute of Biological ChemistryAcademia Sinica Taipei 11529 Taiwan
| | - Lu Chen
- Department of BiochemistryUniversity of Illinois at Urbana-Champaign Urbana IL 61801 USA
| | - Satish R. Malwal
- Department of ChemistryUniversity of Illinois at Urbana-Champaign Urbana IL 61801 USA
| | - Jianan Zhang
- School of Molecular and Cellular BiologyUniversity of Illinois at Urbana-Champaign Urbana IL 61801 USA
| | - Xiangying Hu
- Industrial Enzymes National Engineering LaboratoryTianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 China
| | - Fiona Qu
- Department of ChemistryUniversity of Illinois at Urbana-Champaign Urbana IL 61801 USA
| | - Weidong Liu
- Industrial Enzymes National Engineering LaboratoryTianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 China
| | - Jian‐Wen Huang
- Industrial Enzymes National Engineering LaboratoryTianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 China
| | - Ya‐Shan Cheng
- Industrial Enzymes National Engineering LaboratoryTianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 China
| | - Chun‐Chi Chen
- Industrial Enzymes National Engineering LaboratoryTianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 China
| | - Yunyun Yang
- School of Pharmaceutical SciencesTsinghua University Beijing 100084 China
| | - Yonghui Zhang
- School of Pharmaceutical SciencesTsinghua University Beijing 100084 China
| | - Eric Oldfield
- Department of ChemistryUniversity of Illinois at Urbana-Champaign Urbana IL 61801 USA
- Center for Biophysics and Quantitative BiologyUniversity of Illinois at Urbana-Champaign Urbana IL 61801 USA
| | - Rey‐Ting Guo
- Industrial Enzymes National Engineering LaboratoryTianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 China
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17
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López‐Pérez B, Pepper HP, Ma R, Fawcett BJ, Pehere AD, Wei Q, Ji Z, Polyak SW, Dai H, Song F, Abell AD, Zhang L, George JH. Biosynthetically Guided Structure–Activity Relationship Studies of Merochlorin A, an Antibiotic Marine Natural Product. ChemMedChem 2017; 12:1969-1976. [DOI: 10.1002/cmdc.201700451] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2017] [Indexed: 11/10/2022]
Affiliation(s)
- Borja López‐Pérez
- Department of Chemistry University of Adelaide Adelaide South Australia 5005 Australia
| | - Henry P. Pepper
- Department of Chemistry University of Adelaide Adelaide South Australia 5005 Australia
| | - Rong Ma
- State Key Laboratory of Bioreactor Engineering East China University of Science and Technology Shanghai 200237 China
| | - Benjamin J. Fawcett
- Department of Chemistry University of Adelaide Adelaide South Australia 5005 Australia
| | - Ashok D. Pehere
- Department of Chemistry University of Adelaide Adelaide South Australia 5005 Australia
| | - Qi Wei
- State Key Laboratory of Bioreactor Engineering East China University of Science and Technology Shanghai 200237 China
- College of Life Science Hebei University Baoding 071002 P.R. China
| | - Zengchun Ji
- State Key Laboratory of Bioreactor Engineering East China University of Science and Technology Shanghai 200237 China
- School of Biological Engineering Tianjin University of Science and Technology Tianjin 300457 P.R. China
| | - Steven W. Polyak
- Department of Molecular and Cellular Biology University of Adelaide Adelaide South Australia 5005 Australia
| | - Huanqin Dai
- Chinese Academy of Sciences Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology Chinese Academy of Sciences Beijing 100101 China
| | - Fuhang Song
- Chinese Academy of Sciences Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology Chinese Academy of Sciences Beijing 100101 China
| | - Andrew D. Abell
- Department of Chemistry University of Adelaide Adelaide South Australia 5005 Australia
- Centre for Nanoscale Biophotonics, CNBP University of Adelaide Adelaide, South Australia 5005 Australia
| | - Lixin Zhang
- State Key Laboratory of Bioreactor Engineering East China University of Science and Technology Shanghai 200237 China
- Key Biosensor Laboratory of Shandong Province, Biology Institute Shandong Academy of Sciences Jinan 250014 China
- Laboratory for Marine Biology and Biotechnology Qingdao National Laboratory for Marine Science and Technology Qingdao 266061 China
| | - Jonathan H. George
- Department of Chemistry University of Adelaide Adelaide South Australia 5005 Australia
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Tomita T, Kobayashi M, Karita Y, Yasuno Y, Shinada T, Nishiyama M, Kuzuyama T. Structure and Mechanism of the Monoterpene Cyclolavandulyl Diphosphate Synthase that Catalyzes Consecutive Condensation and Cyclization. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201708474] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Takeo Tomita
- Biotechnology Research Centre; The University of Tokyo; 1-1-1 Yayoi Bunkyo-ku Tokyo 113-8657 Japan
| | - Masaya Kobayashi
- Biotechnology Research Centre; The University of Tokyo; 1-1-1 Yayoi Bunkyo-ku Tokyo 113-8657 Japan
| | - Yuma Karita
- Department of Material Science; Graduate School of Science; Osaka City University Sugimoto; Sumiyoshi-ku Osaka 558-8585 Japan
| | - Yoko Yasuno
- Department of Material Science; Graduate School of Science; Osaka City University Sugimoto; Sumiyoshi-ku Osaka 558-8585 Japan
| | - Tetsuro Shinada
- Department of Material Science; Graduate School of Science; Osaka City University Sugimoto; Sumiyoshi-ku Osaka 558-8585 Japan
| | - Makoto Nishiyama
- Biotechnology Research Centre; The University of Tokyo; 1-1-1 Yayoi Bunkyo-ku Tokyo 113-8657 Japan
| | - Tomohisa Kuzuyama
- Biotechnology Research Centre; The University of Tokyo; 1-1-1 Yayoi Bunkyo-ku Tokyo 113-8657 Japan
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Tomita T, Kobayashi M, Karita Y, Yasuno Y, Shinada T, Nishiyama M, Kuzuyama T. Structure and Mechanism of the Monoterpene Cyclolavandulyl Diphosphate Synthase that Catalyzes Consecutive Condensation and Cyclization. Angew Chem Int Ed Engl 2017; 56:14913-14917. [DOI: 10.1002/anie.201708474] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2017] [Indexed: 11/06/2022]
Affiliation(s)
- Takeo Tomita
- Biotechnology Research Centre; The University of Tokyo; 1-1-1 Yayoi Bunkyo-ku Tokyo 113-8657 Japan
| | - Masaya Kobayashi
- Biotechnology Research Centre; The University of Tokyo; 1-1-1 Yayoi Bunkyo-ku Tokyo 113-8657 Japan
| | - Yuma Karita
- Department of Material Science; Graduate School of Science; Osaka City University Sugimoto; Sumiyoshi-ku Osaka 558-8585 Japan
| | - Yoko Yasuno
- Department of Material Science; Graduate School of Science; Osaka City University Sugimoto; Sumiyoshi-ku Osaka 558-8585 Japan
| | - Tetsuro Shinada
- Department of Material Science; Graduate School of Science; Osaka City University Sugimoto; Sumiyoshi-ku Osaka 558-8585 Japan
| | - Makoto Nishiyama
- Biotechnology Research Centre; The University of Tokyo; 1-1-1 Yayoi Bunkyo-ku Tokyo 113-8657 Japan
| | - Tomohisa Kuzuyama
- Biotechnology Research Centre; The University of Tokyo; 1-1-1 Yayoi Bunkyo-ku Tokyo 113-8657 Japan
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Greunke C, Glöckle A, Antosch J, Gulder TAM. Biokatalytische Totalsynthese von Ikarugamycin. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201611063] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Christian Greunke
- Gulder Biosystems Chemistry; Department of Chemistry and Center for Integrated Protein Science Munich (CIPSM); Lichtenbergstraße 4 85748 Garching Deutschland
| | - Anna Glöckle
- Gulder Biosystems Chemistry; Department of Chemistry and Center for Integrated Protein Science Munich (CIPSM); Lichtenbergstraße 4 85748 Garching Deutschland
| | - Janine Antosch
- Gulder Biosystems Chemistry; Department of Chemistry and Center for Integrated Protein Science Munich (CIPSM); Lichtenbergstraße 4 85748 Garching Deutschland
| | - Tobias A. M. Gulder
- Gulder Biosystems Chemistry; Department of Chemistry and Center for Integrated Protein Science Munich (CIPSM); Lichtenbergstraße 4 85748 Garching Deutschland
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21
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Greunke C, Glöckle A, Antosch J, Gulder TAM. Biocatalytic Total Synthesis of Ikarugamycin. Angew Chem Int Ed Engl 2017; 56:4351-4355. [DOI: 10.1002/anie.201611063] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2016] [Indexed: 12/21/2022]
Affiliation(s)
- Christian Greunke
- Biosystems Chemistry; Department of Chemistry and Center for Integrated Protein Science Munich (CIPSM); Lichtenbergstrasse 4 85748 Garching Germany
| | - Anna Glöckle
- Biosystems Chemistry; Department of Chemistry and Center for Integrated Protein Science Munich (CIPSM); Lichtenbergstrasse 4 85748 Garching Germany
| | - Janine Antosch
- Biosystems Chemistry; Department of Chemistry and Center for Integrated Protein Science Munich (CIPSM); Lichtenbergstrasse 4 85748 Garching Germany
| | - Tobias A. M. Gulder
- Biosystems Chemistry; Department of Chemistry and Center for Integrated Protein Science Munich (CIPSM); Lichtenbergstrasse 4 85748 Garching Germany
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22
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Shimizu Y, Ogata H, Goto S. Type III Polyketide Synthases: Functional Classification and Phylogenomics. Chembiochem 2016; 18:50-65. [DOI: 10.1002/cbic.201600522] [Citation(s) in RCA: 68] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2016] [Indexed: 11/09/2022]
Affiliation(s)
- Yugo Shimizu
- Bioinformatics Center; Institute for Chemical Research; Kyoto University; Gokasho Uji Kyoto 611-0011 Japan
| | - Hiroyuki Ogata
- Bioinformatics Center; Institute for Chemical Research; Kyoto University; Gokasho Uji Kyoto 611-0011 Japan
| | - Susumu Goto
- Bioinformatics Center; Institute for Chemical Research; Kyoto University; Gokasho Uji Kyoto 611-0011 Japan
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23
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Frank A, Seel CJ, Groll M, Gulder T. Characterization of a Cyanobacterial Haloperoxidase and Evaluation of its Biocatalytic Halogenation Potential. Chembiochem 2016; 17:2028-2032. [DOI: 10.1002/cbic.201600417] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2016] [Indexed: 01/05/2023]
Affiliation(s)
- Annika Frank
- Department Chemie; Center for Integrated Protein Science at the Department Chemie and Catalysis Research Center (CRC); Technische Universität München; Lichtenbergstrasse 4 85747 Garching Germany
| | - Catharina Julia Seel
- Department Chemie; Center for Integrated Protein Science at the Department Chemie and Catalysis Research Center (CRC); Technische Universität München; Lichtenbergstrasse 4 85747 Garching Germany
| | - Michael Groll
- Department Chemie; Center for Integrated Protein Science at the Department Chemie and Catalysis Research Center (CRC); Technische Universität München; Lichtenbergstrasse 4 85747 Garching Germany
| | - Tanja Gulder
- Department Chemie; Center for Integrated Protein Science at the Department Chemie and Catalysis Research Center (CRC); Technische Universität München; Lichtenbergstrasse 4 85747 Garching Germany
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25
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Baunach M, Franke J, Hertweck C. Terpenoid-Biosynthese abseits bekannter Wege: unkonventionelle Cyclasen und ihre Bedeutung für die biomimetische Synthese. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201407883] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Baunach M, Franke J, Hertweck C. Terpenoid biosynthesis off the beaten track: unconventional cyclases and their impact on biomimetic synthesis. Angew Chem Int Ed Engl 2014; 54:2604-26. [PMID: 25488271 DOI: 10.1002/anie.201407883] [Citation(s) in RCA: 91] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2014] [Indexed: 11/07/2022]
Abstract
Terpene and terpenoid cyclizations are counted among the most complex chemical reactions occurring in nature and contribute crucially to the tremendous structural diversity of this largest family of natural products. Many studies were conducted at the chemical, genetic, and biochemical levels to gain mechanistic insights into these intriguing reactions that are catalyzed by terpene and terpenoid cyclases. A myriad of these enzymes have been characterized. Classical textbook knowledge divides terpene/terpenoid cyclases into two major classes according to their structure and reaction mechanism. However, recent discoveries of novel types of terpenoid cyclases illustrate that nature's enzymatic repertoire is far more diverse than initially thought. This Review outlines novel terpenoid cyclases that are out of the ordinary.
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Affiliation(s)
- Martin Baunach
- Department of Biomolecular Chemistry, Leibniz Institute for Natural Product Research and Infection Biology (HKI), Beutenbergstrasse 11a, 07745 Jena (Germany)
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