1
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Liu J, Yang J, Xue B, Cao Y, Cheng W, Li Y. Understanding the Mechanochemistry of Mechano-Radicals in Self-Growth Materials by Single-Molecule Force Spectroscopy. Chemphyschem 2024:e202300880. [PMID: 38705870 DOI: 10.1002/cphc.202300880] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2023] [Revised: 04/02/2024] [Accepted: 05/03/2024] [Indexed: 05/07/2024]
Abstract
Recent research on mechano-radicals has provided valuable insights into self-growth and adaptive responsive materials. Typically, mechanophores must remain inert in the absence of force but respond quickly to external tension before other linkages within the polymer network. Azo compounds exhibit promising combinations of mechanical stability and force-triggered reactivity, making them widely used as mechano-radicals in force-responsive materials. However, the activation conditions and behavior of azo compounds have yet to be quantitatively explored. In this study, we investigated the mechanical strength of three azo compounds using single-molecule force spectroscopy. Our results revealed that these compounds exhibit rupture forces ranging from ~500 to 1000 pN, at a loading rate of 3×104 pN s-1. Importantly, these mechanophores demonstrate distinct kinetic properties. Their unique mechanical attributes enable azo bond scission and free radical generation before causing major polymer backbone damage of entire material during polymer network deformation. This fundamental understanding of mechanophores holds significant promise for the development of self-growth materials and their related applications.
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Affiliation(s)
- Jing Liu
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid-State Microstructure, Key Laboratory of Intelligent Optical Sensing and Manipulation, Ministry of Education, Department of Physics, Nanjing University, Nanjing, Jiangsu, 210093, China
| | - Jiahui Yang
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid-State Microstructure, Key Laboratory of Intelligent Optical Sensing and Manipulation, Ministry of Education, Department of Physics, Nanjing University, Nanjing, Jiangsu, 210093, China
| | - Bin Xue
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid-State Microstructure, Key Laboratory of Intelligent Optical Sensing and Manipulation, Ministry of Education, Department of Physics, Nanjing University, Nanjing, Jiangsu, 210093, China
| | - Yi Cao
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid-State Microstructure, Key Laboratory of Intelligent Optical Sensing and Manipulation, Ministry of Education, Department of Physics, Nanjing University, Nanjing, Jiangsu, 210093, China
| | - Wei Cheng
- Department of Oral Implantology, Nanjing Stomatological Hospital, Medical School of Nanjing University, Nanjing, Jiangsu, 210008, China
| | - Yiran Li
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid-State Microstructure, Key Laboratory of Intelligent Optical Sensing and Manipulation, Ministry of Education, Department of Physics, Nanjing University, Nanjing, Jiangsu, 210093, China
- School of Chemistry and Chemical Engineering, Ningxia University, Yinchuan, Ningxia, 750021, China
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2
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Hartmann B, Fleischhauer L, Nicolau M, Jensen THL, Taran FA, Clausen-Schaumann H, Reuten R. Profiling native pulmonary basement membrane stiffness using atomic force microscopy. Nat Protoc 2024; 19:1498-1528. [PMID: 38429517 DOI: 10.1038/s41596-024-00955-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Accepted: 11/27/2023] [Indexed: 03/03/2024]
Abstract
Mammalian cells sense and react to the mechanics of their immediate microenvironment. Therefore, the characterization of the biomechanical properties of tissues with high spatial resolution provides valuable insights into a broad variety of developmental, homeostatic and pathological processes within living organisms. The biomechanical properties of the basement membrane (BM), an extracellular matrix (ECM) substructure measuring only ∼100-400 nm across, are, among other things, pivotal to tumor progression and metastasis formation. Although the precise assignment of the Young's modulus E of such a thin ECM substructure especially in between two cell layers is still challenging, biomechanical data of the BM can provide information of eminent diagnostic potential. Here we present a detailed protocol to quantify the elastic modulus of the BM in murine and human lung tissue, which is one of the major organs prone to metastasis. This protocol describes a streamlined workflow to determine the Young's modulus E of the BM between the endothelial and epithelial cell layers shaping the alveolar wall in lung tissues using atomic force microscopy (AFM). Our step-by-step protocol provides instructions for murine and human lung tissue extraction, inflation of these tissues with cryogenic cutting medium, freezing and cryosectioning of the tissue samples, and AFM force-map recording. In addition, it guides the reader through a semi-automatic data analysis procedure to identify the pulmonary BM and extract its Young's modulus E using an in-house tailored user-friendly AFM data analysis software, the Center for Applied Tissue Engineering and Regenerative Medicine processing toolbox, which enables automatic loading of the recorded force maps, conversion of the force versus piezo-extension curves to force versus indentation curves, calculation of Young's moduli and generation of Young's modulus maps, where the pulmonary BM can be identified using a semi-automatic spatial filtering tool. The entire protocol takes 1-2 d.
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Affiliation(s)
- Bastian Hartmann
- Munich University of Applied Sciences, Center for Applied Tissue Engineering and Regenerative Medicine - CANTER, Munich, Germany
- Center for Nanoscience, Munich, Germany
| | - Lutz Fleischhauer
- Munich University of Applied Sciences, Center for Applied Tissue Engineering and Regenerative Medicine - CANTER, Munich, Germany
- Center for Nanoscience, Munich, Germany
| | - Monica Nicolau
- Experimental and Clinical Pharmacology and Toxicology, Medical Faculty, University of Freiburg, Freiburg, Germany
- Department of Obstetrics and Gynecology, Medical Center, University of Freiburg, Freiburg, Germany
| | - Thomas Hartvig Lindkær Jensen
- Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
- Department of Pathology, Rigshospitalet, Copenhagen, Denmark
| | - Florin-Andrei Taran
- Department of Obstetrics and Gynecology, Medical Center, University of Freiburg, Freiburg, Germany
| | - Hauke Clausen-Schaumann
- Munich University of Applied Sciences, Center for Applied Tissue Engineering and Regenerative Medicine - CANTER, Munich, Germany.
- Center for Nanoscience, Munich, Germany.
| | - Raphael Reuten
- Experimental and Clinical Pharmacology and Toxicology, Medical Faculty, University of Freiburg, Freiburg, Germany.
- Department of Obstetrics and Gynecology, Medical Center, University of Freiburg, Freiburg, Germany.
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3
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Ma Z, Zhang H, Song Y, Mei Q, Shi P, Park JW, Zhang W. Increasing the Mechanical Stability of Polymer-Gold Interfacial Connection: A Parallel Covalent Strategy. ACS Macro Lett 2023; 12:421-427. [PMID: 36924462 DOI: 10.1021/acsmacrolett.3c00058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/18/2023]
Abstract
Thiol-gold (S-Au) chemistry has been widely used in coating and functionalizing gold surfaces because it is robust and highly efficient. However, recent studies have shown that the S-Au-based self-assembled monolayers can lead to significant instability under external mechanical loading (e.g., in a swelled polymer film). Such instability limits further applications of S-Au chemistry-based functional materials. Here, we report a surface-modifying procedure based on a parallel covalent strategy. By employing dendritic macromolecules as a "middle layer" between the gold surface and polymer, the interfacial connecting strength increased by at least 350% as revealed by atomic force microscopy-based single molecule force spectroscopy (AFM-SMFS). The ultimate cleavage structure is confirmed to be an amide bond by control SMFS experiments, fluorescent microscopy, and dynamic force spectroscopy. This study/concept paves the way to prepare stable stimuli-responsive polymer brushes on solid surfaces and study mechanophores with high force stability.
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Affiliation(s)
- Ziwen Ma
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China
| | - Honglin Zhang
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China
| | - Yu Song
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China
| | - Qiuping Mei
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China
| | - Pengju Shi
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China
| | - Joon Won Park
- Department of Chemistry, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang 37673, Korea
| | - Wenke Zhang
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China
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4
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Wang J, Kouznetsova TB, Xia J, Ángeles FJ, de la Cruz MO, Craig SL. A polyelectrolyte handle for single‐molecule force spectroscopy. JOURNAL OF POLYMER SCIENCE 2023. [DOI: 10.1002/pol.20230051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
Affiliation(s)
- Junpeng Wang
- Department of Chemistry Duke University Durham North Carolina USA
| | | | - Jianshe Xia
- Department of Materials Science and Engineering Northwestern University Evanston Illinois USA
| | - Felipe Jiménez Ángeles
- Department of Materials Science and Engineering Northwestern University Evanston Illinois USA
| | | | - Stephen L. Craig
- Department of Chemistry Duke University Durham North Carolina USA
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5
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Wang Z, Wang M, Zhao Z, Zheng P. Quantification of carboxylate-bridged di-zinc site stability in protein due ferri by single-molecule force spectroscopy. Protein Sci 2023; 32:e4583. [PMID: 36718829 PMCID: PMC9926469 DOI: 10.1002/pro.4583] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2022] [Revised: 01/16/2023] [Accepted: 01/27/2023] [Indexed: 02/01/2023]
Abstract
Carboxylate-bridged diiron proteins belong to a protein family involved in different physiological processes. These proteins share the conservative EXXH motif, which provides the carboxylate bridge and is critical for metal binding. Here, we choose de novo-designed single-chain due ferri protein (DFsc), a four-helical protein with two EXXH motifs as a model protein, to study the stability of the carboxylate-bridged di-metal binding site. The mechanical and kinetic properties of the di-Zn site in DFsc were obtained by atomic force microscopy-based single-molecule force spectroscopy. Zn-DFsc showed a considerable rupture force of ~200 pN, while the apo-protein is mechanically labile. In addition, multiple rupture pathways were observed with different probabilities, indicating the importance of the EXXH-based carboxylate-bridged metal site. These results demonstrate carboxylate-bridged di-metal site is mechanically stable and improve our understanding of this important type of metalloprotein.
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Affiliation(s)
- Zhiyi Wang
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical EngineeringNanjing UniversityNanjingPeople's Republic of China
| | - Mengdie Wang
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical EngineeringNanjing UniversityNanjingPeople's Republic of China
| | - Zhongxin Zhao
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical EngineeringNanjing UniversityNanjingPeople's Republic of China
| | - Peng Zheng
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical EngineeringNanjing UniversityNanjingPeople's Republic of China
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6
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Cardosa-Gutierrez M, De Bo G, Duwez AS, Remacle F. Bond breaking of furan-maleimide adducts via a diradical sequential mechanism under an external mechanical force. Chem Sci 2023; 14:1263-1271. [PMID: 36756317 PMCID: PMC9891376 DOI: 10.1039/d2sc05051j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Accepted: 12/27/2022] [Indexed: 01/06/2023] Open
Abstract
Substituted furan-maleimide Diels-Alder adducts are bound by dynamic covalent bonds that make them particularly attractive mechanophores. Thermally activated [4 + 2] retro-Diels-Alder (DA) reactions predominantly proceed via a concerted mechanism in the ground electronic state. We show that an asymmetric mechanical force along the anchoring bonds in both the endo and exo isomers of proximal dimethyl furan-maleimide adducts favors a sequential pathway. The switching from a concerted to a sequential mechanism occurs at external forces of ≈1 nN. The first bond rupture occurs for a projection of the pulling force on the scissile bond at ≈4.3 nN for the exo adduct and ≈3.8 nN for the endo one. The reaction is inhibited for external forces up to ≈3.4 nN for the endo adduct and 3.6 nN for the exo one after which it is activated. In the activated region, at 4 nN, the rupture rate of the first bond for the endo adduct is computed to be ≈3 orders of magnitude larger than for the exo one in qualitative agreement with recent sonication experiments [Z. Wang and S. L. Craig, Chem. Commun., 2019, 55, 12263-12266]. In the intermediate region of the path between the rupture of the first and the second bond, the lowest singlet state exhibits a diradical character for both adducts and is close in energy to a diradical triplet state. The computed values of spin-orbit coupling along the path are too small for inducing intersystem crossings. These findings open the way for the rational design of DA mechanophores for polymer science and photochemistry.
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Affiliation(s)
| | - Guillaume De Bo
- Department of Chemistry, University of ManchesterManchesterM13 9PLUK
| | - Anne-Sophie Duwez
- UR Molecular Systems, Department of Chemistry, University of Liège 4000 Liège Belgium
| | - Francoise Remacle
- UR Molecular Systems, Department of Chemistry, University of Liège 4000 Liège Belgium
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7
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Wang J, Gao X, Boarino A, Célerse F, Corminboeuf C, Klok HA. Mechanical Acceleration of Ester Bond Hydrolysis in Polymers. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c01789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Jian Wang
- Institut des Matériaux and Institut des Sciences et Ingénierie Chimiques, Laboratoire des Polymères, École Polytechnique Fédérale de Lausanne (EPFL), Bâtiment MXD, Station 12, CH-1015Lausanne, Switzerland
| | - Xiaobin Gao
- Institut des Matériaux and Institut des Sciences et Ingénierie Chimiques, Laboratoire des Polymères, École Polytechnique Fédérale de Lausanne (EPFL), Bâtiment MXD, Station 12, CH-1015Lausanne, Switzerland
| | - Alice Boarino
- Institut des Matériaux and Institut des Sciences et Ingénierie Chimiques, Laboratoire des Polymères, École Polytechnique Fédérale de Lausanne (EPFL), Bâtiment MXD, Station 12, CH-1015Lausanne, Switzerland
| | - Frédéric Célerse
- Institute of Chemical Sciences and Engineering and National Centre for Computational Design and Discovery of Novel Materials (MARVEL), Laboratory for Computational Molecular Design, 1015Lausanne, Switzerland
| | - Clémence Corminboeuf
- Institute of Chemical Sciences and Engineering and National Centre for Computational Design and Discovery of Novel Materials (MARVEL), Laboratory for Computational Molecular Design, 1015Lausanne, Switzerland
| | - Harm-Anton Klok
- Institut des Matériaux and Institut des Sciences et Ingénierie Chimiques, Laboratoire des Polymères, École Polytechnique Fédérale de Lausanne (EPFL), Bâtiment MXD, Station 12, CH-1015Lausanne, Switzerland
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8
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Interdomain Linker Effect on the Mechanical Stability of Ig Domains in Titin. Int J Mol Sci 2022; 23:ijms23179836. [PMID: 36077234 PMCID: PMC9456048 DOI: 10.3390/ijms23179836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2022] [Revised: 08/24/2022] [Accepted: 08/26/2022] [Indexed: 11/17/2022] Open
Abstract
Titin is the largest protein in humans, composed of more than one hundred immunoglobulin (Ig) domains, and plays a critical role in muscle’s passive elasticity. Thus, the molecular design of this giant polyprotein is responsible for its mechanical function. Interestingly, most of these Ig domains are connected directly with very few interdomain residues/linker, which suggests such a design is necessary for its mechanical stability. To understand this design, we chose six representative Ig domains in titin and added nine glycine residues (9G) as an artificial interdomain linker between these Ig domains. We measured their mechanical stabilities using atomic force microscopy-based single-molecule force spectroscopy (AFM-SMFS) and compared them to the natural sequence. The AFM results showed that the linker affected the mechanical stability of Ig domains. The linker mostly reduces its mechanical stability to a moderate extent, but the opposite situation can happen. Thus, this effect is very complex and may depend on each particular domain’s property.
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9
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Mukadam AA, East ALL. Challenges in predicting Δ rxnG in solution: The chelate effect. J Chem Phys 2022; 157:034109. [DOI: 10.1063/5.0097291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Gibbs energies for reactions involving aqueous ions are challenging to predict due to the large solvation energies of such ions. A stringent test would be the ab initio reproduction of the aqueous-phase chelate effect, an entropic effect in reactions of very small enthalpy changes. This paper examines what is required to achieve such a reproduction for the paradigmatic reaction M(NH3)42+ + 2 en → M( en)22+ + 4 NH3 ( en = 1,2-ethylenediamine), for which ΔrxnG* and ΔrxnH* are −2.3 and +1.6 kcal mol−1, respectively, if M = Zn. Explicit solvation via simulation was avoided in order to allow sufficiently accurate electronic structure models; this required the use of continuum solvation models (CSMs), and a great deal of effort was made in attempting to lower the relative errors of ΔsolvG*[M(NH3)42+] vs ΔsolvG*[M( en)22+] from the CSMs available in Gaussian software. CSMs in ADF and JDFTx software were also tested. A uniform 2.2 kcal mol−1 accuracy in ΔrxnG* for all three metal-atom choices M = {Zn, Cd, Hg} was eventually achieved, but not from any of the known CSMs tested, nor from cavity size reoptimization, nor from semicontinuum modeling: post facto solvation energy corrections [one per solute type, NH3, en, M(NH3)42+, M( en)22+] were needed. It is hoped that this study will aid (and encourage) further CSM development for coordination-complex ions.
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Affiliation(s)
- A. A. Mukadam
- Department of Chemistry and Biochemistry, University of Regina, Regina, Saskatchewan S4S 0A2, Canada
| | - A. L. L. East
- Department of Chemistry and Biochemistry, University of Regina, Regina, Saskatchewan S4S 0A2, Canada
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10
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Nie JY, Song GB, Deng YB, Zheng P. Single-Molecule Force Spectroscopy Reveals Stability of mitoNEET and its [2Fe2Se] Cluster in Weakly Acidic and Basic Solutions. Chemistry 2022; 11:e202200056. [PMID: 35608094 PMCID: PMC9127745 DOI: 10.1002/open.202200056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Revised: 04/21/2022] [Indexed: 11/05/2022]
Abstract
The outer mitochondrial membrane protein mitoNEET (mNT) is a recently identified iron-sulfur protein containing a unique Fe2 S2 (His)1 (Cys)3 metal cluster with a single Fe-N(His87) coordinating bond. This labile Fe-N bond led to multiple unfolding/rupture pathways of mNT and its cluster by atomic force microscopy-based single-molecule force spectroscopy (AFM-SMFS), one of most common tools for characterizing the molecular mechanics. Although previous ensemble studies showed that this labile Fe-N(His) bond is essential for protein function, they also indicated that the protein and its [2Fe2S] cluster are stable under acidic conditions. Thus, we applied AFM-SMFS to measure the stability of mNT and its cluster at pH values of 6, 7, and 8. Indeed, all previous multiple unfolding pathways of mNT were still observed. Moreover, single-molecule measurements revealed that the stabilities of the protein and the [2Fe2S] cluster are consistent at these pH values with only ≈20 pN force differences. Thus, we found that the behavior of the protein is consistent in both weakly acidic and basic solutions despite a labile Fe-N bond.
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Affiliation(s)
- Jing-Yuan Nie
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 210023, P. R. China
| | - Guo-Bin Song
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 210023, P. R. China
| | - Yi-Bing Deng
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 210023, P. R. China
| | - Peng Zheng
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 210023, P. R. China
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11
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Shi S, Wu T, Zheng P. Direct Measurements of the Cobalt-thiolate Bonds Strength in Rubredoxin by Single-Molecule Force Spectroscopy. Chembiochem 2022; 23:e202200165. [PMID: 35475313 DOI: 10.1002/cbic.202200165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Revised: 04/26/2022] [Indexed: 11/07/2022]
Abstract
Cobalt is a trace transition metal. Although it is not abundant on earth, tens of cobalt-containing proteins exist in life. Moreover, the characteristic spectrum of Co(II) ion makes it a powerful probe for the characterization of metal-binding proteins through the formation of cobalt-ligand bonds. Since most of these natural and artificial cobalt-containing proteins are stable, we believe that these cobalt-ligand bonds in the protein system are also mechanically stable. To prove this, we used atomic force microscopy-based single-molecule force spectroscopy (AFM-SMFS) to directly measure the rupture force of Co(II)-thiolate bond in Co-substituted rubredoxin (CoRD). By combining the chemical denature/renature method for building metalloprotein and cysteine coupling-based polyprotein construction strategy, we successfully prepared the polyprotein sample (CoRD) n suitable for single-molecule study. Thus, we quantified the strength of Co(II)-thiolate bonds in rubredoxin with a rupture force of ~140 pN, revealing that the bond is a stable chemical bond. In addition, the Co-S bond is more labile than the Zn-S bond in proteins, similar to the result from the metal-competing titration experiment.
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Affiliation(s)
- Shengchao Shi
- Nanjing University, School of Chemistry and Chemical Engineering, CHINA
| | - Tao Wu
- Nanjing University, School of Chemistry and Chemical Engineering, CHINA
| | - Peng Zheng
- Nanjing University, School of Chemistry and Chemical Engineering, 168 Xianlin Ave, Nanjing, Jiangsu Province, 210023, Nanjing, CHINA
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12
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Zhao Q. Revised equation of enzymatic kinetics and thermodynamic mechanisms for directed evolution of enzymes. INT J CHEM KINET 2022. [DOI: 10.1002/kin.21558] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Qinyi Zhao
- Department of biochemistry and molecular biology Medical Institute CRRC Beijing China
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13
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Huerta-Madroñal M, Caro-León J, Espinosa-Cano E, Aguilar MR, Vázquez-Lasa B. Chitosan - Rosmarinic acid conjugates with antioxidant, anti-inflammatory and photoprotective properties. Carbohydr Polym 2021; 273:118619. [PMID: 34561015 DOI: 10.1016/j.carbpol.2021.118619] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Revised: 08/24/2021] [Accepted: 08/26/2021] [Indexed: 11/15/2022]
Abstract
Rosmarinic acid is an attractive candidate for skin applications because of its antioxidant, anti-inflammatory, and photoprotective functions, however, its poor bioavailability hampers its therapeutic outcome. In this context, synthesis of polymer conjugates is an alternative to enlarge its applications. This work describes the synthesis of novel water-soluble chitosan - rosmarinic acid conjugates (CSRA) that have great potential for skin applications. Chitosan was functionalized with different contents of rosmarinic acid as confirmed by ATR-FTIR, 1H NMR and UV spectroscopies. CSRA conjugates presented three-fold radical scavenger capacity compared to the free phenolic compound. Films were prepared by solvent-casting procedure and the biological activity of the lixiviates was studied in vitro. Results revealed that lixiviates reduced activation of inflamed macrophages, improved antibacterial capacity against E. coli with respect to native chitosan and free rosmarinic acid, and also attenuated UVB-induced cellular damage and reactive oxygen species production in fibroblasts and keratinocytes.
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Affiliation(s)
- Miguel Huerta-Madroñal
- Group of Biomaterials, Institute of Polymer Science and Technology ICTP-CSIC, Madrid, Spain.
| | - Javier Caro-León
- Grupo de Investigación en Biopolímeros, Centro de Investigación en Alimentación y Desarrollo A.C., Sonora, Mexico.
| | - Eva Espinosa-Cano
- Group of Biomaterials, Institute of Polymer Science and Technology ICTP-CSIC, Madrid, Spain; Networking Biomedical Research Centre in Bioengineering, Biomaterials and Nanomedicine, CIBER-BBN, Madrid, Spain.
| | - María Rosa Aguilar
- Group of Biomaterials, Institute of Polymer Science and Technology ICTP-CSIC, Madrid, Spain; Networking Biomedical Research Centre in Bioengineering, Biomaterials and Nanomedicine, CIBER-BBN, Madrid, Spain.
| | - Blanca Vázquez-Lasa
- Group of Biomaterials, Institute of Polymer Science and Technology ICTP-CSIC, Madrid, Spain; Networking Biomedical Research Centre in Bioengineering, Biomaterials and Nanomedicine, CIBER-BBN, Madrid, Spain.
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14
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Kumar A, Singh M, Panda AK, Tyagi YK. Amide-Linked Dendron-based Amphiphiles: A class of pH sensitive and highly biocompatible drug carrier for sustained drug release. Supramol Chem 2021. [DOI: 10.1080/10610278.2021.1975280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Ashwani Kumar
- University School of Basic and Applied Sciences, Guru Gobind Singh Indraprastha University, Dwarka, India
| | - Mamta Singh
- Product Development Cell- II, National Institute of Immunology (NII), Aruna Asaf Ali Marg, India
| | - Amulya Kumar Panda
- Product Development Cell- II, National Institute of Immunology (NII), Aruna Asaf Ali Marg, India
| | - Yogesh Kumar Tyagi
- University School of Basic and Applied Sciences, Guru Gobind Singh Indraprastha University, Dwarka, India
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15
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Kobayashi H, Suzuki Y, Sagawa T, Kuroki K, Hasegawa JY, Fukuoka A. Impact of tensile and compressive forces on the hydrolysis of cellulose and chitin. Phys Chem Chem Phys 2021; 23:15908-15916. [PMID: 34160486 DOI: 10.1039/d1cp01650d] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Mechanochemistry enables unique reaction pathways in comparison to conventional thermal reactions. Notably, it can achieve selective hydrolysis of cellulose and chitin, a set of abundant and recalcitrant biomass, by solvent-free ball-milling in the presence of acid catalysts. Although the merits of mechanochemistry for this reaction are known, the reaction mechanism is still unclear. Here, we show how the mechanical forces produced by ball-milling activate the glycosidic bonds of carbohydrate molecules towards hydrolysis. This work uses experimental and theoretical evaluations to clarify the mechanism. The experimental results reveal that the ball-mill accelerates the hydrolysis by mechanical forces rather than local heat. Meanwhile, the classical and quantum mechanics calculations indicate the subnano to nano Newton order of tensile and compressive forces that activate polysaccharide molecules in the ball-milling process. Although previous studies have taken into account only the stretching of the molecules, our results show that compressive forces are stronger and effective for the activation of glycosidic bonds. Accordingly, in addition to stretching, compression is crucial for the mechanocatalytic reaction. Our work connects the classical physics of ball-milling on a macro scale with molecular activation at a quantum level, which would help to understand and control mechanochemical reactions.
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Affiliation(s)
- Hirokazu Kobayashi
- Institute for Catalysis, Hokkaido University, Kita 21 Nishi 10, Kita-ku, Sapporo, Hokkaido 001-0021, Japan.
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16
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Sammon MS, Biewend M, Michael P, Schirra S, Ončák M, Binder WH, Beyer MK. Activation of a Copper Biscarbene Mechano-Catalyst Using Single-Molecule Force Spectroscopy Supported by Quantum Chemical Calculations. Chemistry 2021; 27:8723-8729. [PMID: 33822419 PMCID: PMC8251802 DOI: 10.1002/chem.202100555] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Indexed: 11/17/2022]
Abstract
Single-molecule force spectroscopy allows investigation of the effect of mechanical force on individual bonds. By determining the forces necessary to sufficiently activate bonds to trigger dissociation, it is possible to predict the behavior of mechanophores. The force necessary to activate a copper biscarbene mechano-catalyst intended for self-healing materials was measured. By using a safety line bypassing the mechanophore, it was possible to pinpoint the dissociation of the investigated bond and determine rupture forces to range from 1.6 to 2.6 nN at room temperature in dimethyl sulfoxide. The average length-increase upon rupture of the Cu-C bond, due to the stretching of the safety line, agrees with quantum chemical calculations, but the values exhibit an unusual scattering. This scattering was assigned to the conformational flexibility of the mechanophore, which includes formation of a threaded structure and recoiling of the safety line.
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Affiliation(s)
- Matthew S. Sammon
- Institut für Ionenphysik und Angewandte PhysikUniversität InnsbruckTechnikerstraße 256020InnsbruckAustria
| | - Michel Biewend
- Department of Macromolecular ChemistryMartin-Luther-Universität Halle-Wittenbergvon-Danckelmann-Platz 406120Halle (Saale)Germany
| | - Philipp Michael
- Department of Macromolecular ChemistryMartin-Luther-Universität Halle-Wittenbergvon-Danckelmann-Platz 406120Halle (Saale)Germany
| | - Simone Schirra
- Institut für Ionenphysik und Angewandte PhysikUniversität InnsbruckTechnikerstraße 256020InnsbruckAustria
| | - Milan Ončák
- Institut für Ionenphysik und Angewandte PhysikUniversität InnsbruckTechnikerstraße 256020InnsbruckAustria
| | - Wolfgang H. Binder
- Department of Macromolecular ChemistryMartin-Luther-Universität Halle-Wittenbergvon-Danckelmann-Platz 406120Halle (Saale)Germany
| | - Martin K. Beyer
- Institut für Ionenphysik und Angewandte PhysikUniversität InnsbruckTechnikerstraße 256020InnsbruckAustria
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17
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Song G, Tian F, Liu H, Li G, Zheng P. Pioglitazone Inhibits Metal Cluster Transfer of mitoNEET by Stabilizing the Labile Fe-N Bond Revealed at Single-Bond Level. J Phys Chem Lett 2021; 12:3860-3867. [PMID: 33856229 DOI: 10.1021/acs.jpclett.0c03852] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Outer mitochondrial membrane protein mitoNEET (mNT) is a target of the type 2 diabetes drug pioglitazone. It contains a labile Fe2S2(His)1(Cys)3 metal cluster with a single Fe-N(His87) coordinating bond and can transfer its cluster to acceptor proteins. Previous ensemble studies showed that pioglitazone's binding inhibited the transfer by stabilizing the cluster, and histidine 87 may be the key mediator. Here we used atomic force microscopy-based single-molecule force spectroscopy (AFM-SMFS) to study the unfolding process of mNT dimer in the absence and presence of pioglitazone, which can distinguish the binding effect for different regions of a protein. By developing a two-step strategy using different mNT monomers with respective purification tags, we solve the problem that the classic polyprotein formation disables the mNT to dimerize. As a result, a polyprotein including a stable, naturally noncovalently bound mNT homodimer is obtained, which is required for reliable AFM measurement and pioglitazone binding. Then, the dissociation rate (koff) of the metal cluster was measured, showing a 10-fold decrease upon pioglitazone binding, while the other parts decreased only 3-fold, verifying that pioglitazone mainly stabilizes the cluster. Moreover, when the Fe(III)-N(His87) bond was ruptured, this effect for the remaining Fe2S2(Cys)3 intermediate largely disappeared. Consequently, AFM results revealed that pioglitazone inhibited the metal cluster transfer of mNT by stabilizing the labile Fe(III)-N(His87) bond. In addition, an alternative method to build a natural, noncovalently bound protein dimer or complex for reliable single-molecule measurement was developed.
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Affiliation(s)
- Guobin Song
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, P.R. China
| | - Fang Tian
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, P.R. China
| | - Huaxing Liu
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, P.R. China
| | - Guoqiang Li
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, P.R. China
| | - Peng Zheng
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, P.R. China
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18
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Wang S, Beech HK, Bowser BH, Kouznetsova TB, Olsen BD, Rubinstein M, Craig SL. Mechanism Dictates Mechanics: A Molecular Substituent Effect in the Macroscopic Fracture of a Covalent Polymer Network. J Am Chem Soc 2021; 143:3714-3718. [PMID: 33651599 DOI: 10.1021/jacs.1c00265] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The fracture of rubbery polymer networks involves a series of molecular events, beginning with conformational changes along the polymer backbone and culminating with a chain scission reaction. Here, we report covalent polymer gels in which the macroscopic fracture "reaction" is controlled by mechanophores embedded within mechanically active network strands. We synthesized poly(ethylene glycol) (PEG) gels through the end-linking of azide-terminated tetra-arm PEG (Mn = 5 kDa) with bis-alkyne linkers. Networks were formed under identical conditions, except that the bis-alkyne was varied to include either a cis-diaryl (1) or cis-dialkyl (2) linked cyclobutane mechanophore that acts as a mechanochemical "weak link" through a force-coupled cycloreversion. A control network featuring a bis-alkyne without cyclobutane (3) was also synthesized. The networks show the same linear elasticity (G' = 23-24 kPa, 0.1-100 Hz) and equilibrium mass swelling ratios (Q = 10-11 in tetrahydrofuran), but they exhibit tearing energies that span a factor of 8 (3.4 J, 10.6, and 27.1 J·m-2 for networks with 1, 2, and 3, respectively). The difference in fracture energy is well-aligned with the force-coupled scission kinetics of the mechanophores observed in single-molecule force spectroscopy experiments, implicating local resonance stabilization of a diradical transition state in the cycloreversion of 1 as a key determinant of the relative ease with which its network is torn. The connection between macroscopic fracture and a small-molecule reaction mechanism suggests opportunities for molecular understanding and optimization of polymer network behavior.
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Affiliation(s)
| | - Haley K Beech
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | | | | | - Bradley D Olsen
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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19
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Bai Y, Zhang D, Guo Q, Xiao J, Zheng M, Yang J. Study of the Enzyme Activity Change due to Inkjet Printing for Biosensor Fabrication. ACS Biomater Sci Eng 2021; 7:787-793. [PMID: 33443403 DOI: 10.1021/acsbiomaterials.0c01515] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Enzymes, the most commonly used biosensing element, have a great influence on the performance of biosensors. Recently, drop-on-demand (DOD) printing technique has been widely employed for the fabrication of biosensors due to its merits of noncontact, less waste, and rapid deposition. However, enzyme printing studies were rarely conducted on the effect of printing parameters from the aspect of the pressure wave propagation mechanism. This study investigated the effects of pressure wave propagation on enzyme activity from the aspects of wave superposition, wave amplitude, resulting mechanical stress, and protein conformation change using pyruvate oxidase as the model enzyme. We found that the mechanical stress increased the activity of pyruvate oxidase during the inkjet printing process. A shear rate of 3 × 105 s-1 enhanced the activity by 14.10%. The enhancement mechanism was investigated, and the mechanical activation or mild proteolysis was found to change the conformation of pyruvate oxidase and improve its activity. This study is fundamental to understand the effect of both printing mechanism and induced mechanical stress on the properties of biomolecules and plays an important role in modulating the activity of other enzyme-based inks, which is crucial for the development of biosensors.
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Affiliation(s)
- Yang Bai
- Department of Biomedical Engineering, University of Western Ontario, 1151 Richmond Street, London, Ontario N6A 3K7, Canada
| | - Dongxing Zhang
- Department of Mechanical and Materials Engineering, University of Western Ontario, 1151 Richmond Street, London, Ontario N6A 3K7, Canada.,Shenzhen Hongyi Precision Products Co., Ltd., 101-72#, Songxin Industry Zone, Hongxing Community, Songgang Street, Baoan, Shenzhen 518000,Guangdong, China
| | - Qiuquan Guo
- Department of Mechanical and Materials Engineering, University of Western Ontario, 1151 Richmond Street, London, Ontario N6A 3K7, Canada
| | - Junfeng Xiao
- Department of Mechanical and Materials Engineering, University of Western Ontario, 1151 Richmond Street, London, Ontario N6A 3K7, Canada
| | - Mingyue Zheng
- Department of Mechanical and Materials Engineering, University of Western Ontario, 1151 Richmond Street, London, Ontario N6A 3K7, Canada
| | - Jun Yang
- Department of Biomedical Engineering, University of Western Ontario, 1151 Richmond Street, London, Ontario N6A 3K7, Canada.,Department of Mechanical and Materials Engineering, University of Western Ontario, 1151 Richmond Street, London, Ontario N6A 3K7, Canada
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20
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Alonso-Caballero A, Echelman DJ, Tapia-Rojo R, Haldar S, Eckels EC, Fernandez JM. Protein folding modulates the chemical reactivity of a Gram-positive adhesin. Nat Chem 2021; 13:172-181. [PMID: 33257887 PMCID: PMC7858226 DOI: 10.1038/s41557-020-00586-x] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2019] [Accepted: 09/29/2020] [Indexed: 01/30/2023]
Abstract
Gram-positive bacteria colonize mucosal tissues, withstanding large mechanical perturbations such as coughing, which generate shear forces that exceed the ability of non-covalent bonds to remain attached. To overcome these challenges, the pathogen Streptococcus pyogenes utilizes the protein Cpa, a pilus tip-end adhesin equipped with a Cys-Gln thioester bond. The reactivity of this bond towards host surface ligands enables covalent anchoring; however, colonization also requires cell migration and spreading over surfaces. The molecular mechanisms underlying these seemingly incompatible requirements remain unknown. Here we demonstrate a magnetic tweezers force spectroscopy assay that resolves the dynamics of the Cpa thioester bond under force. When folded at forces <6 pN, the Cpa thioester bond reacts reversibly with amine ligands, which are common in inflammation sites; however, mechanical unfolding and exposure to forces >6 pN block thioester reformation. We hypothesize that this folding-coupled reactivity switch (termed a smart covalent bond) could allow the adhesin to undergo binding and unbinding to surface ligands under low force and remain covalently attached under mechanical stress.
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Affiliation(s)
- Alvaro Alonso-Caballero
- Department of Biological Sciences, Columbia University, NY
10027, USA,Correspondence and request of material should be
addressed to A.A-C.:
| | | | - Rafael Tapia-Rojo
- Department of Biological Sciences, Columbia University, NY
10027, USA
| | - Shubhasis Haldar
- Department of Biological Sciences, Columbia University, NY
10027, USA
| | - Edward C. Eckels
- Department of Biological Sciences, Columbia University, NY
10027, USA
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21
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Patel DH, Marx D, East ALL. Improving the Yield and Rate of Acid-Catalyzed Deconstruction of Lignin by Mechanochemical Activation. Chemphyschem 2020; 21:2660-2666. [PMID: 32845560 DOI: 10.1002/cphc.202000671] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Indexed: 11/07/2022]
Abstract
Lignin is a potential biomass feedstock from plant material, but it is particularly difficult to economically process. Inspired by recent ball-milling results, state-of-the-art quantum mechanochemistry calculations have been performed to isolate and probe the purely mechanochemical stretching effect alone upon acid-catalyzed deconstruction of lignin. Effects upon cleavage of several exemplary simple ethers are examined first, and with low stretching force they all are predicted to cleave substantially faster, allowing for use of milder acids and lower temperatures. Effects upon an experimentally known lignin fragment model (containing the ubiquitous β-O-4 linkage) are next examined; this first required a mechanism refinement (3-step indirect cleavage, 1-step side reaction) and identification of the rate-limiting step under zero-force (thermal) conditions. Mechanochemical activation using very low stretching forces improves at first only yield, by fully shutting off the ring-closure side reaction. At only somewhat larger forces, in stark contrast, a switch in mechanism is found to occur, from 3-step indirect cleavage to the direct cleavage mechanism of simple ethers, finally strongly enhancing the cleavage rate of lignin. It is concluded that mechanochemical activation of the common β-O-4 link in lignin would improve the rate of its acidolysis via a mechanism switch past a low force threshold. Relevance to ball-milling experiments is discussed.
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Affiliation(s)
- Darpan H Patel
- Department of Chemistry and Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada
| | - Dominik Marx
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780, Bochum, Germany
| | - Allan L L East
- Department of Chemistry and Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada
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22
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Patel DH, East ALL. Semicontinuum (Cluster-Continuum) Modeling of Acid-Catalyzed Aqueous Reactions: Alkene Hydration. J Phys Chem A 2020; 124:9088-9104. [PMID: 33074670 DOI: 10.1021/acs.jpca.0c07011] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
An effort is made to reduce the errors of continuum solvation models (CSMs) with semicontinuum modeling to achieve 3 kcal mol-1 agreement with experiment for acid-catalysis activation Gibbs energies. First, two underappreciated CSM issues are reviewed: errors in the CSM solvation Gibbs energies grow beyond 5 kcal mol-1 (i) as ions are made smaller and (ii) as water clusters grow larger. Second, the computational reproduction of the known Gibbs energies (ΔrG and Δ‡G) of the paradigmatic reaction ethene + H2O + H3O+ → TS+ → ethanol + H3O+ is attempted. It is argued that, despite the >5 kcal mol-1 solvation errors for ions, it is possible to employ error cancellation strategies to reduce the errors in the reaction and activation Gibbs energies to 3 kcal mol-1 accuracy. A new 3 kcal mol-1 effect due to solvent-molecule "placement" (confinement from 1 M bulk concentration) was isolated and proved useful. Third, computational reproduction of the known entropies (ΔrS and Δ‡S) of the paradigmatic reaction is attempted using Trouton's constant and neglect of solvent structure reorganization effects (which must cancel well for this reaction); this worked well for ΔrS but needs empirical correction of ∼11 cal mol-1 K-1 for Δ‡S due to solvent disorientation when H3O+ is consumed. These entropy estimates allow for enthalpy (ΔrH and Δ‡H) estimation from the Gibbs energy values. Fourth, two recommended options, including A + H3O+·2W → [AHOH2+·2W]‡, are shown to also work well for the activations of propene and isobutene.
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Affiliation(s)
- Darpan H Patel
- Department of Chemistry and Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada
| | - Allan L L East
- Department of Chemistry and Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada
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23
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Song G, Ding X, Liu H, Yuan G, Tian F, Shi S, Yang Y, Li G, Zheng P. Single-Molecule Force Spectroscopy Reveals that the Fe-N Bond Enables Multiple Rupture Pathways of the 2Fe2S Cluster in a MitoNEET Monomer. Anal Chem 2020; 92:14783-14789. [PMID: 33048522 DOI: 10.1021/acs.analchem.0c03536] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The mitochondrial outer membrane protein, mitoNEET (mNT), is an iron-sulfur protein containing an Fe2S2(His)1(Cys)3 cluster with a unique single Fe-N bond. Previous studies have shown that this Fe(III)-N(His) bond is essential for metal cluster transfer and protein function. To further understand the effect of this unique Fe-N bond on the metal cluster and protein, we used atomic force microscopy-based single-molecule force spectroscopy (AFM-SMFS) to investigate the mechanical unfolding mechanism of an mNT monomer, focusing on the rupture pathway and kinetic stability of the cluster. We found that the Fe-N bond was the weakest point of the cluster, the rupture of which occurred first, and could be independent of the cluster break. Moreover, this Fe-N bond enabled a dynamic and labile iron-sulfur cluster, as multiple unfolding pathways of mNT with a unique Fe2S2(Cys)3 intermediate were observed accordingly.
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Affiliation(s)
- Guobin Song
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, P. R. China
| | - Xuan Ding
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, P. R. China
| | - Huaxing Liu
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, P. R. China
| | - Guodong Yuan
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, P. R. China
| | - Fang Tian
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, P. R. China
| | - Shengchao Shi
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, P. R. China
| | - Yang Yang
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, P. R. China
| | - Guoqiang Li
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, P. R. China
| | - Peng Zheng
- State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, P. R. China
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24
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Affiliation(s)
- Guillaume De Bo
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
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25
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Avila-Ortiz CG, Juaristi E. Novel Methodologies for Chemical Activation in Organic Synthesis under Solvent-Free Reaction Conditions. Molecules 2020; 25:E3579. [PMID: 32781678 PMCID: PMC7464687 DOI: 10.3390/molecules25163579] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Revised: 07/31/2020] [Accepted: 08/03/2020] [Indexed: 12/13/2022] Open
Abstract
One central challenge for XXI century chemists is the development of sustainable processes that do not represent a risk either to humanity or to the environment. In this regard, the search for more efficient and clean alternatives to achieve the chemical activation of molecules involved in chemical transformations has played a prominent role in recent years. The use of microwave or UV-Vis light irradiation, and mechanochemical activation is already widespread in many laboratories. Nevertheless, an additional condition to achieve "green" processes comes from the point of view of so-called atom economy. The removal of solvents from chemical reactions generally leads to cleaner, more efficient and more economical processes. This review presents several illustrative applications of the use of sustainable protocols in the synthesis of organic compounds under solvent-free reaction conditions.
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Affiliation(s)
- Claudia Gabriela Avila-Ortiz
- Departamento de Química, Centro de Investigación y de Estudios Avanzados, Av. IPN 2508, 07360 Ciudad de México, Mexico
| | - Eusebio Juaristi
- Departamento de Química, Centro de Investigación y de Estudios Avanzados, Av. IPN 2508, 07360 Ciudad de México, Mexico
- El Colegio Nacional, Donceles 104, Centro Histórico, 06020 Ciudad de México, Mexico
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27
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Three concomitant C–C dissociation pathways during the mechanical activation of an N-heterocyclic carbene precursor. Nat Chem 2020; 12:826-831. [DOI: 10.1038/s41557-020-0509-1] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2019] [Accepted: 06/12/2020] [Indexed: 11/09/2022]
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28
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Ardila‐Fierro KJ, Lukin S, Etter M, Užarević K, Halasz I, Bolm C, Hernández JG. Direct Visualization of a Mechanochemically Induced Molecular Rearrangement. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201914921] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
| | - Stipe Lukin
- Division of Physical Chemistry Ruđer Bošković Institute Bijenička 54 10000 Zagreb Croatia
| | - Martin Etter
- Deutsches Elektronen-Synchrotron (DESY) Notkestr. 85 22607 Hamburg Germany
| | - Krunoslav Užarević
- Division of Physical Chemistry Ruđer Bošković Institute Bijenička 54 10000 Zagreb Croatia
| | - Ivan Halasz
- Division of Physical Chemistry Ruđer Bošković Institute Bijenička 54 10000 Zagreb Croatia
| | - Carsten Bolm
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
| | - José G. Hernández
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
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29
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Ardila‐Fierro KJ, Lukin S, Etter M, Užarević K, Halasz I, Bolm C, Hernández JG. Direct Visualization of a Mechanochemically Induced Molecular Rearrangement. Angew Chem Int Ed Engl 2020; 59:13458-13462. [DOI: 10.1002/anie.201914921] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Revised: 03/18/2020] [Indexed: 01/31/2023]
Affiliation(s)
| | - Stipe Lukin
- Division of Physical Chemistry Ruđer Bošković Institute Bijenička 54 10000 Zagreb Croatia
| | - Martin Etter
- Deutsches Elektronen-Synchrotron (DESY) Notkestr. 85 22607 Hamburg Germany
| | - Krunoslav Užarević
- Division of Physical Chemistry Ruđer Bošković Institute Bijenička 54 10000 Zagreb Croatia
| | - Ivan Halasz
- Division of Physical Chemistry Ruđer Bošković Institute Bijenička 54 10000 Zagreb Croatia
| | - Carsten Bolm
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
| | - José G. Hernández
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
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30
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Superior nanofiltration membranes with gradient cross-linked selective layer fabricated via controlled hydrolysis. J Memb Sci 2020. [DOI: 10.1016/j.memsci.2020.118067] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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31
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Deng Y, Shi S, Zheng B, Wu T, Zheng P. Enzymatic Construction of Protein Polymer/Polyprotein Using OaAEP1 and TEV Protease. Bio Protoc 2020; 10:e3596. [PMID: 33659562 PMCID: PMC7842765 DOI: 10.21769/bioprotoc.3596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Revised: 02/24/2020] [Accepted: 02/26/2020] [Indexed: 04/01/2024] Open
Abstract
The development of chemical and biological coupling technologies in recent years has made possible of protein polymers engineering. We have developed an enzymatic method for building polyproteins using a protein ligase OaAEP1 (asparagine endopeptidase 1) and protease TEV (tobacco etching virus). Using a mobile TEV protease site compatible with the OaAEP1 ligation, we achieved a stepwise polymerization of the protein on the surface. The produced polyprotein can be verified by protein unfolding scenario using atomic force microscopy-based single-molecule force spectroscopy (AFM-SMFS). Thus, this study provides an alternative method for polyprotein engineering and immobilization.
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Affiliation(s)
- Yibing Deng
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 21002, China
| | - Shengchao Shi
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 21002, China
| | - Bin Zheng
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 21002, China
| | - Tao Wu
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 21002, China
| | - Peng Zheng
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 21002, China
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Becke TD, Ness S, Kaufmann BK, Hartmann B, Schilling AF, Sudhop S, Hilleringmann M, Clausen-Schaumann H. Pilus-1 Backbone Protein RrgB of Streptococcus pneumoniae Binds Collagen I in a Force-Dependent Way. ACS NANO 2019; 13:7155-7165. [PMID: 31184856 DOI: 10.1021/acsnano.9b02587] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Attachment to host tissue is a prerequisite for successful host colonization and invasion of pathogens. Many pathogenic bacteria use surface appendices, called pili, to bind and firmly attach to host tissue surfaces. Although it has been speculated that the laterally positioned D3 domain of the pilus-1 backbone protein RrgB of Streptococcus pneumoniae may promote bacterial-host interaction, via adhesion to extracellular matrix molecules, such as collagen, earlier studies showed no affinity of RrgB to collagen I. Using atomic force microscopy-based single molecule force spectroscopy combined with lateral force microscopy, we show that under mechanical load, RrgB in fact binds to human collagen I in a force-dependent manner. We observe exceptionally strong interactions, with interaction forces reaching as much as 1500 pN, and we show that high force loading and shearing rates enhance and further strengthen the interaction. In addition, the affinity of RrgB to collagen I under mechanical load not only depends on the orientation of the D3 domain but also on the orientation of the collagen fibrils, relative to the pulling direction. Both exceptionally high binding forces and force-induced bond strengthening resemble the behavior of so-called catch bonds, which have recently been observed in bacterial adhesins, but have not been reported for multimeric backbone subunits of virulence related pili.
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Affiliation(s)
- Tanja D Becke
- Center for Applied Tissue Engineering and Regenerative Medicine , Munich University of Applied Sciences , 80335 Munich , Germany
- Center for NanoScience , Ludwig-Maximilians-Universität München , 80799 Munich , Germany
| | - Stefan Ness
- FG Protein Biochemistry and Cellular Microbiology , Munich University of Applied Sciences , 80335 Munich , Germany
| | - Benedikt K Kaufmann
- Center for Applied Tissue Engineering and Regenerative Medicine , Munich University of Applied Sciences , 80335 Munich , Germany
- Center for NanoScience , Ludwig-Maximilians-Universität München , 80799 Munich , Germany
| | - Bastian Hartmann
- Center for Applied Tissue Engineering and Regenerative Medicine , Munich University of Applied Sciences , 80335 Munich , Germany
- Center for NanoScience , Ludwig-Maximilians-Universität München , 80799 Munich , Germany
| | - Arndt F Schilling
- Clinic for Trauma Surgery, Orthopaedics, and Plastic Surgery , University Medical Center Göttingen , 37075 Göttingen , Germany
| | - Stefanie Sudhop
- Center for Applied Tissue Engineering and Regenerative Medicine , Munich University of Applied Sciences , 80335 Munich , Germany
- Center for NanoScience , Ludwig-Maximilians-Universität München , 80799 Munich , Germany
| | - Markus Hilleringmann
- FG Protein Biochemistry and Cellular Microbiology , Munich University of Applied Sciences , 80335 Munich , Germany
| | - Hauke Clausen-Schaumann
- Center for Applied Tissue Engineering and Regenerative Medicine , Munich University of Applied Sciences , 80335 Munich , Germany
- Center for NanoScience , Ludwig-Maximilians-Universität München , 80799 Munich , Germany
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