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Riedl V, Heiser L, Portius M, Schmidt JO, Pompe T. Detection of Sulfonamide Antibiotics Using an Elastic Hydrogel Microparticles-Based Optical Biosensor. ACS APPLIED MATERIALS & INTERFACES 2024; 16:50202-50211. [PMID: 39271662 PMCID: PMC11440465 DOI: 10.1021/acsami.4c08010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/15/2024]
Abstract
Sulfonamide antibiotics were the first synthetic antibiotics on the market and still have a broad field of application. Their extensive usage, wrong disposal, and limited degradation technologies in wastewater treatment plants lead to high concentrations in the environment, resulting in a negative impact on ecosystems and an acceleration of antibiotic resistance. Although lab-based analytical methods allow for sulfonamide detection, comprehensive monitoring is hampered by the nonavailability of on-site, inexpensive sensing technologies. In this work, we exploit functionalized elastic hydrogel microparticles and their ability to easily deform upon specific binding with enzyme-coated surfaces to establish the groundwork of a biosensing assay for the fast and straightforward detection of sulfonamide antibiotics. The detection assay is based on sulfamethoxazole-functionalized hydrogel microparticles as sensor probes and the biomimetic interaction of sulfonamide analytes with their natural target enzyme, dihydropteroate synthase (DHPS). DHPS from S. pneumoniae was recombinantly produced by E. coli and covalently coupled on a glass biochip using a reactive maleic anhydride copolymer coating. Monodisperse poly(ethylene glycol) hydrogel microparticles of 50 μm in diameter were synthesized within a microfluidic setup, followed by the oriented coupling of a sulfamethoxazole derivative to the microparticle surface. In proof-of-concept experiments, sulfamethoxazole, as the most used sulfonamide antibiotic in medical applications, was demonstrated to be specifically detectable above a concentration of 10 μM. With its straightforward detection principle, this assay has the potential to be used for point-of-use monitoring of sulfonamide antibiotic contaminants in the environment.
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Affiliation(s)
- Veronika Riedl
- Institute of Biochemistry, Leipzig University, Johannisallee 21-23, 04103, Leipzig, Germany
| | - Lara Heiser
- Institute of Biochemistry, Leipzig University, Johannisallee 21-23, 04103, Leipzig, Germany
| | - Matthias Portius
- Institute of Biochemistry, Leipzig University, Johannisallee 21-23, 04103, Leipzig, Germany
| | - Jann Ole Schmidt
- Institute of Biochemistry, Leipzig University, Johannisallee 21-23, 04103, Leipzig, Germany
| | - Tilo Pompe
- Institute of Biochemistry, Leipzig University, Johannisallee 21-23, 04103, Leipzig, Germany
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Tereshin MN, Melikhova TD, Eletskaya BZ, Ivanova EA, Onoprienko LV, Makarov DA, Razumikhin MV, Myagkikh IV, Fabrichniy IP, Stepanenko VN. Biocatalytic Method for Producing an Affinity Resin for the Isolation of Immunoglobulins. Biomolecules 2024; 14:849. [PMID: 39062563 PMCID: PMC11274487 DOI: 10.3390/biom14070849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Revised: 07/11/2024] [Accepted: 07/12/2024] [Indexed: 07/28/2024] Open
Abstract
Affinity chromatography is a widely used technique for antibody isolation. This article presents the successful synthesis of a novel affinity resin with a mutant form of protein A (BsrtA) immobilized on it as a ligand. The key aspect of the described process is the biocatalytic immobilization of the ligand onto the matrix using the sortase A enzyme. Moreover, we used a matrix with primary amino groups without modification, which greatly simplifies the synthesis process. The resulting resin shows a high dynamic binding capacity (up to 50 mg IgG per 1 mL of sorbent). It also demonstrates high tolerance to 0.1 M NaOH treatment and maintains its effectiveness even after 100 binding, elution, and sanitization cycles.
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Affiliation(s)
- Mikhail N. Tereshin
- Lomonosov Institute of Fine Chemical Technologies, MIREA—Russian Technological University, Vernadskogo Pr. 86, 119571 Moscow, Russia; (M.N.T.); (V.N.S.)
- Federal State Autonomous Educational Institution of Higher Education I.M. Sechenov First Moscow State Medical University of the Ministry of Health of the Russian Federation, 8-2 Trubetskaya Str., 119991 Moscow, Russia;
| | - Tatiana D. Melikhova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Miklukho-Maklaya St. 16/10, 117437 Moscow, Russia; (T.D.M.); (L.V.O.); (I.V.M.)
| | - Barbara Z. Eletskaya
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Miklukho-Maklaya St. 16/10, 117437 Moscow, Russia; (T.D.M.); (L.V.O.); (I.V.M.)
| | - Elena A. Ivanova
- International Biotechnology Center “Generium” LLC, Vladimirskaya st. 14, 601125 Volginsky, Russia; (E.A.I.); (I.P.F.)
| | - Lyudmila V. Onoprienko
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Miklukho-Maklaya St. 16/10, 117437 Moscow, Russia; (T.D.M.); (L.V.O.); (I.V.M.)
| | - Dmitry A. Makarov
- Federal State Autonomous Educational Institution of Higher Education I.M. Sechenov First Moscow State Medical University of the Ministry of Health of the Russian Federation, 8-2 Trubetskaya Str., 119991 Moscow, Russia;
| | | | - Igor V. Myagkikh
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Miklukho-Maklaya St. 16/10, 117437 Moscow, Russia; (T.D.M.); (L.V.O.); (I.V.M.)
| | - Igor P. Fabrichniy
- International Biotechnology Center “Generium” LLC, Vladimirskaya st. 14, 601125 Volginsky, Russia; (E.A.I.); (I.P.F.)
| | - Vasiliy N. Stepanenko
- Lomonosov Institute of Fine Chemical Technologies, MIREA—Russian Technological University, Vernadskogo Pr. 86, 119571 Moscow, Russia; (M.N.T.); (V.N.S.)
- Federal State Autonomous Educational Institution of Higher Education I.M. Sechenov First Moscow State Medical University of the Ministry of Health of the Russian Federation, 8-2 Trubetskaya Str., 119991 Moscow, Russia;
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ZHOU L, WANG Z, REN X, LIU D, ZHANG L, ZHANG W. [Preparation technology comparison and performance evaluation of different protein A affinity chromatographic materials]. Se Pu 2024; 42:410-419. [PMID: 38736384 PMCID: PMC11089455 DOI: 10.3724/sp.j.1123.2024.01018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Indexed: 05/14/2024] Open
Abstract
Protein A affinity chromatographic materials are widely used in clinical medicine and biomedicine because of their specific interactions with immunoglobulin G (IgG). Both the characteristics of the matrix, such as its structure and morphology, and the surface modification method contribute to the affinity properties of the packing materials. The specific, orderly, and oriented immobilization of protein A can reduce its steric hindrance with the matrix and preserve its bioactive sites. In this study, four types of affinity chromatographic materials were obtained using agarose and polyglycidyl methacrylate (PGMA) spheres as substrates, and multifunctional epoxy and maleimide groups were used to fix protein A. The effects of the ethylenediamine concentration, reaction pH, buffer concentration, and other conditions on the coupling efficiency of protein A and adsorption performance of IgG were evaluated. Multifunctional epoxy materials were prepared by converting part of the epoxy groups of the agarose and PGMA matrices into amino groups using 0.2 and 1.6 mol/L ethylenediamine, respectively. Protein A was coupled to the multifunctional epoxy materials using 5 mmol/L borate buffer (pH 8) as the reaction solution. When protein A was immobilized on the substrates by maleimide groups, the agarose and PGMA substrates were activated with 25% (v/v) ethylenediamine for 16 h to convert all epoxy groups into amino groups. The maleimide materials were then converted into amino-modified materials by adding 3 mg/mL 3-maleimidobenzoyl-N-hydroxysuccinimide ester (MBS) dissolved in dimethyl sulfoxide (DMSO) and then suspended in 5 mmol/L borate buffer (pH 8). The maleimide groups reacted specifically with the C-terminal of the sulfhydryl group of recombinant protein A to achieve highly selective fixation on both the agarose and PGMA substrates. The adsorption performance of the affinity materials for IgG was improved by optimizing the bonding conditions of protein A, such as the matrix type, matrix particle size, and protein A content, and the adsorption properties of each affinity material for IgG were determined. The column pressure of the protein A affinity materials prepared using agarose or PGMA as the matrix via the maleimide method was subsequently evaluated at different flow rates. The affinity materials prepared with PGMA as the matrix exhibited superior mechanical strength compared with the materials prepared with agarose. Moreover, an excellent linear relationship between the flow rate and column pressure of 80 mL/min was observed for this affinity material. Subsequently, the effect of the particle size of the PGMA matrix on the binding capacity of IgG was investigated. Under the same protein A content, the dynamic binding capacity of the affinity materials on the PGMA matrix was higher when the particle size was 44-88 μm than when other particle sizes were used. The properties of the affinity materials prepared using the multifunctional epoxy and maleimide-modified materials were compared by synthesizing affinity materials with different protein A coupling amounts of 1, 2, 4, 6, 8, and 10 mg/mL. The dynamic and static binding capacities of each material for bovine IgG were then determined. The prepared affinity material was packed into a chromatographic column to purify IgG from bovine colostrum. Although all materials showed specific adsorption selectivity for IgG, the affinity material prepared by immobilizing protein A on the PGMA matrix with maleimide showed significantly better performance and achieved a higher dynamic binding capacity at a lower protein grafting amount. When the protein grafting amount was 15.71 mg/mL, the dynamic binding capacity of bovine IgG was 32.23 mg/mL, and the dynamic binding capacity of human IgG reached 54.41 mg/mL. After 160 cycles of alkali treatment, the dynamic binding capacity of the material reached 94.6% of the initial value, indicating its good stability. The developed method is appropriate for the production of protein A affinity chromatographic materials and shows great potential in the fields of protein immobilization and immunoadsorption material synthesis.
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Zhang X, Xie Y, Huang D, Zhang X, Tang X, Chen L, Luo SZ, Lou J, He C. Rapid and Mechanically Robust Immobilization of Proteins on Silica Studied at the Single-Molecule Level by Force Spectroscopy and Verified at the Macroscopic Level. ACS APPLIED MATERIALS & INTERFACES 2024; 16:16962-16972. [PMID: 38520330 DOI: 10.1021/acsami.3c18699] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/25/2024]
Abstract
Typical methods for stable immobilization of proteins often involve time-consuming surface modification of silicon-based materials to enable specific binding, while the nonspecific adsorption method is faster but usually unstable. Herein, we fused a silica-binding protein, Si-tag, to target proteins so that the target proteins could attach directly to silica substrates in a single step, markedly streamlining the immobilization process. The adhesion force between the Si-tag and glass substrates was determined to be approximately 400-600 pN at the single-molecule level by atomic force microscopy, which is greater than the unfolding force of most proteins. The adhesion force of the Si-tag exhibits a slight increase when pulled from the C-terminus compared to that from the N-terminus. Furthermore, the Si-tag's adhesion force on a glass surface is marginally higher than that on a silicon nitride probe. The binding properties of the Si-tag are not obviously affected by environmental factors, including pH, salt concentration, and temperature. In addition, the macroscopic adhesion force between the Si-tag-coated hydrogel and glass substrates was ∼40 times higher than that of unmodified hydrogels. Therefore, the Si-tag, with its strong silica substrate binding ability, provides a useful tool as an excellent fusion tag for the rapid and mechanically robust immobilization of proteins on silica and for the surface coating of silica-binding materials.
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Affiliation(s)
- Xiaoxu Zhang
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China
- Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China
| | - Yayan Xie
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China
- Sino Biological Inc., Building 9, Jing Dongbei Technology Park, No.18 Kechuang 10th St, BDA, Beijing 100176, China
| | - Duo Huang
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China
| | - Xiaozhong Zhang
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China
| | - Xiaoyu Tang
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China
- Sino Biological Inc., Building 9, Jing Dongbei Technology Park, No.18 Kechuang 10th St, BDA, Beijing 100176, China
| | - Long Chen
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China
| | - Shi-Zhong Luo
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China
| | - Jizhong Lou
- Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China
| | - Chengzhi He
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China
- Sino Biological Inc., Building 9, Jing Dongbei Technology Park, No.18 Kechuang 10th St, BDA, Beijing 100176, China
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D'Agata R, Bellassai N, Spoto G. Exploiting the design of surface plasmon resonance interfaces for better diagnostics: A perspective review. Talanta 2024; 266:125033. [PMID: 37562226 DOI: 10.1016/j.talanta.2023.125033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Revised: 08/01/2023] [Accepted: 08/03/2023] [Indexed: 08/12/2023]
Abstract
Surface Plasmon Resonance based-sensors are promising tools for precision diagnostics as they can provide tests useful for early and, whenever possible, non-invasive disease detection and monitoring. The design of novel, robust and effective interfaces enabling the sensing of a variety of molecular interactions in a highly selective and sensitive manner is a necessary step to obtain both accurate and reliable detection by SPR. This review covers the recent research efforts in this area, specifically emphasizing well-designed interfaces and applications in real-life samples. In particular, after a short introduction which identifies some of the critical challenges, the emerging strategies for the integration of the linker, the metal substrate and the recognition element on the sensing interface will be explored and discussed in three sections, as well as the opportunities for building SPR biosensors, easy to use, and with excellent sensitivities. Finally, a summary of some of the more promising and latest diagnostic applications will be provided, presenting a new window into the near-future perspectives.
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Affiliation(s)
- Roberta D'Agata
- Department of Chemical Sciences, University of Catania, Viale Andrea Doria, 6, 95125, Catania, Italy; INBB, Istituto Nazionale di Biostrutture e Biosistemi, Viale Delle Medaglie D'Oro, 305, 00136, Roma, Italy.
| | - Noemi Bellassai
- Department of Chemical Sciences, University of Catania, Viale Andrea Doria, 6, 95125, Catania, Italy; INBB, Istituto Nazionale di Biostrutture e Biosistemi, Viale Delle Medaglie D'Oro, 305, 00136, Roma, Italy
| | - Giuseppe Spoto
- Department of Chemical Sciences, University of Catania, Viale Andrea Doria, 6, 95125, Catania, Italy; INBB, Istituto Nazionale di Biostrutture e Biosistemi, Viale Delle Medaglie D'Oro, 305, 00136, Roma, Italy
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6
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Messina GML, Campione P, Marletta G. Building Surfaces with Controlled Site-Density of Anchored Human Serum Albumin. ACS APPLIED BIO MATERIALS 2023; 6:4952-4960. [PMID: 37902234 DOI: 10.1021/acsabm.3c00647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2023]
Abstract
Stable and uniform layers of protein molecules at the surface are important to build passive devices as well as active constructs for smart biointerfaces for a large number of biomedical applications. In this context, a strategy to build-up surfaces able to anchor protein molecules on specific and controlled surface sites has been developed. Human serum albumin (HSA) has been chosen as a model protein due to its important antithrombogenic properties and its features in cell response highly valuable for in vivo devices. Uniform self-assembled monolayers of 2,2':6'2″-terpyridines (SAM), whose sites were further employed to chelate copper and iron ions, forming SAM-Cu(II) and SAM-Fe(II) complexes, have been developed. The effect of two metal cations on the physicochemical features of SAM, including thickness, Young's modulus, and tip-monolayer adhesion factors, has been investigated. Protein adsorption at different concentrations showed that the copper ion-templated surfaces exhibit highly specific mass uptake, kinetic behavior, and recognition and anchoring of HSA molecules owing to the coordination sphere of the different cations. The results pave the way to the development of a more general strategy to obtain ordered and density-tuned arrays of specific metal cations, which in turn would drive the anchoring of precise proteins for different biological functions.
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Affiliation(s)
- Grazia M L Messina
- Laboratory for Molecular Surfaces and Nanotechnology (LAMSUN), Department of Chemical Sciences, University of Catania and CSGI, Viale A. Doria 6, 95125 Catania, Italy
| | - Paola Campione
- Laboratory for Molecular Surfaces and Nanotechnology (LAMSUN), Department of Chemical Sciences, University of Catania and CSGI, Viale A. Doria 6, 95125 Catania, Italy
| | - Giovanni Marletta
- Laboratory for Molecular Surfaces and Nanotechnology (LAMSUN), Department of Chemical Sciences, University of Catania and CSGI, Viale A. Doria 6, 95125 Catania, Italy
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Boumar I, Deliorman M, Sukumar P, Qasaimeh MA. Spike- and nucleocapsid-based gold colloid assay toward the development of an adhesive bandage for rapid SARS-CoV-2 immune response detection and screening. MICROSYSTEMS & NANOENGINEERING 2023; 9:82. [PMID: 37351273 PMCID: PMC10281977 DOI: 10.1038/s41378-023-00554-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 05/02/2023] [Accepted: 05/14/2023] [Indexed: 06/24/2023]
Abstract
Immunoglobulin M (IgM) and immunoglobulin G (IgG) antibodies are important biomarkers used for the diagnosis and screening of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections in both symptomatic and asymptomatic individuals. These antibodies are highly specific to the spike (S) and nucleocapsid (N) proteins of the SARS-CoV-2 virus. This paper outlines the development steps of a novel hybrid (vertical-lateral-vertical) flow assay in the form of a finger-stick point-of-care device, similar to an adhesive bandage, designed for the timely detection and screening of IgM and IgG immune responses to SARS-CoV-2 infections. The assay, comprising a vertically stacked plasma/serum separation membrane, conjugate pad, and detection (readout) zone, utilizes gold nanoparticles (AuNPs) conjugated with SARS-CoV-2 S and N proteins to effectively capture IgM and IgG antibodies from a pinprick (~15 µL) of blood in just one step and provides results of no immune IgM-/IgG-, early immune IgM+/IgG-, active immune IgM+/IgG+ or immune IgM-/IgG+ in a short amount of time (minutes). The adhesive bandage-like construction is an example of the design of rapid, low-cost, disposable, and easy-to-use tests for large-scale detection and screening in households. Furthermore, the bandage can be easily adjusted and optimized to detect different viral infections as they arise by simply selecting appropriate antigens related to pandemics and outbreaks.
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Affiliation(s)
- Imen Boumar
- Division of Engineering, New York University Abu Dhabi (NYUAD), Abu Dhabi, UAE
| | | | - Pavithra Sukumar
- Division of Engineering, New York University Abu Dhabi (NYUAD), Abu Dhabi, UAE
| | - Mohammad A. Qasaimeh
- Division of Engineering, New York University Abu Dhabi (NYUAD), Abu Dhabi, UAE
- NYU Tandon School of Engineering, New York University, New York, USA
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Comparison of Four Immobilization Methods for Different Transaminases. Catalysts 2023. [DOI: 10.3390/catal13020300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
Biocatalytic syntheses often require unfavorable conditions, which can adversely affect enzyme stability. Consequently, improving the stability of biocatalysts is needed, and this is often achieved by immobilization. In this study, we aimed to compare the stability of soluble and immobilized transaminases from different species. A cysteine in a consensus sequence was converted to a single aldehyde by the formylglycine-generating enzyme for directed single-point attachment to amine beads. This immobilization was compared to cross-linked enzyme aggregates (CLEAs) and multipoint attachments to glutaraldehyde-functionalized amine- and epoxy-beads. Subsequently, the reactivity and stability (i.e., thermal, storage, and solvent stability) of all soluble and immobilized transaminases were analyzed and compared under different conditions. The effect of immobilization was highly dependent on the type of enzyme, the immobilization strategy, and the application itself, with no superior immobilization technique identified. Immobilization of HAGA-beads often resulted in the highest activities of up to 62 U/g beads, and amine beads were best for the hexameric transaminase from Luminiphilus syltensis. Furthermore, the immobilization of transaminases enabled its reusability for at least 10 cycles, while maintaining full or high activity. Upscaled kinetic resolutions (partially performed in a SpinChemTM reactor) resulted in a high conversion, maintained enantioselectivity, and high product yields, demonstrating their applicability.
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Geiger F, Wendlandt T, Berking T, Spatz JP, Wege C. Convenient site-selective protein coupling from bacterial raw lysates to coenzyme A-modified tobacco mosaic virus (TMV) by Bacillus subtilis Sfp phosphopantetheinyl transferase. Virology 2023; 578:61-70. [PMID: 36473278 DOI: 10.1016/j.virol.2022.11.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 11/22/2022] [Accepted: 11/22/2022] [Indexed: 11/27/2022]
Abstract
A facile enzyme-mediated strategy enables site-specific covalent one-step coupling of genetically tagged luciferase molecules to coenzyme A-modified tobacco mosaic virus (TMV-CoA) both in solution and on solid supports. Bacillus subtilis surfactin phosphopantetheinyl transferase Sfp produced in E. coli mediated the conjugation of firefly luciferase N-terminally extended by eleven amino acids forming a 'ybbR tag' as Sfp-selective substrate, which even worked in bacterial raw lysates. The enzymes displayed on the protein coat of the TMV nanocarriers exhibited high activity. As TMV has proven a beneficial high surface-area adapter template stabilizing enzymes in different biosensing layouts in recent years, the use of TMV-CoA for fishing ybbR-tagged proteins from complex mixtures might become an advantageous concept for the versatile equipment of miniaturized devices with biologically active proteins. It comes along with new opportunities for immobilizing multiple functionalities on TMV adapter coatings, as desired, e.g., in handheld systems for point-of-care detection.
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Affiliation(s)
- Fania Geiger
- Max Planck Institute for Medical Research, Department of Cellular Biophysics, Jahnstraße 29, 69120, Heidelberg, Germany; Heidelberg University, Institute for Molecular Systems Engineering and Advanced Materials (IMSEAM), Im Neuenheimer Feld 225, 69120, Heidelberg, Germany
| | - Tim Wendlandt
- University of Stuttgart, Institute of Biomaterials and Biomolecular Systems, Research Unit Molecular and Synthetic Plant Virology, Pfaffenwaldring 57, 70569, Stuttgart, Germany
| | - Tim Berking
- University of Stuttgart, Institute of Organic Chemistry, Pfaffenwaldring 55, 70569, Stuttgart, Germany
| | - Joachim P Spatz
- Max Planck Institute for Medical Research, Department of Cellular Biophysics, Jahnstraße 29, 69120, Heidelberg, Germany; Heidelberg University, Institute for Molecular Systems Engineering and Advanced Materials (IMSEAM), Im Neuenheimer Feld 225, 69120, Heidelberg, Germany; Max Planck School Matter to Life, Jahnstraße 29, 69120, Heidelberg, Germany
| | - Christina Wege
- University of Stuttgart, Institute of Biomaterials and Biomolecular Systems, Research Unit Molecular and Synthetic Plant Virology, Pfaffenwaldring 57, 70569, Stuttgart, Germany.
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Bourassin N, Barbault F, Baaden M, Sacquin-Mora S. Between Two Walls: Modeling the Adsorption Behavior of β-Glucosidase A on Bare and SAM-Functionalized Gold Surfaces. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:1313-1323. [PMID: 35050631 DOI: 10.1021/acs.langmuir.1c01774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The efficient immobilization of enzymes on surfaces remains a complex but central issue in the biomaterials field, which requires us to understand this process at the atomic level. Using a multiscale approach combining all-atom molecular dynamics and coarse-grain Brownian dynamics simulations, we investigated the adsorption behavior of β-glucosidase A (βGA) on bare and self-assembled monolayer (SAM)-functionalized gold surfaces. We monitored the enzyme position and orientation during the molecular dynamics (MD) trajectories and measured the contacts it forms with both surfaces. While the adsorption process has little impact on the protein conformation, it can nonetheless perturb its mechanical properties and catalytic activity. Our results show that compared to the SAM-functionalized surface, the adsorption of βGA on bare gold is more stable, but less specific, and more likely to disrupt the enzyme's function. This observation emphasizes the fact that the structural organization of proteins at the solid interface is a key point when designing devices based on enzyme immobilization, as one must find an acceptable stability-activity trade-off.
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Affiliation(s)
- Nicolas Bourassin
- Laboratoire de Biochimie Théorique, UPR 9080, Université de Paris, CNRS, 13 rue Pierre et Marie Curie, 75005 Paris, France
- Institut de Biologie Physico-Chimique-Fondation Edmond de Rothschild, PSL Research University, 75005 Paris, France
| | | | - Marc Baaden
- Laboratoire de Biochimie Théorique, UPR 9080, Université de Paris, CNRS, 13 rue Pierre et Marie Curie, 75005 Paris, France
- Institut de Biologie Physico-Chimique-Fondation Edmond de Rothschild, PSL Research University, 75005 Paris, France
| | - Sophie Sacquin-Mora
- Laboratoire de Biochimie Théorique, UPR 9080, Université de Paris, CNRS, 13 rue Pierre et Marie Curie, 75005 Paris, France
- Institut de Biologie Physico-Chimique-Fondation Edmond de Rothschild, PSL Research University, 75005 Paris, France
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11
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Ray N. Design of a novel Fischer carbene complex which can facilitate thiol mediated site-specific protein immobilization. RESULTS IN CHEMISTRY 2022. [DOI: 10.1016/j.rechem.2022.100419] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022] Open
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12
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Pavlova E, Maslakova A, Prusakov K, Bagrov D. Optical sensors based on electrospun membranes – principles, applications, and prospects for chemistry and biology. NEW J CHEM 2022. [DOI: 10.1039/d2nj01821g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Electrospun membranes are promising substrates for receptor layer immobilization in optical sensors. Either colorimetric, luminescence, or Raman scattering signal can be used to detect the analyte.
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Affiliation(s)
- Elizaveta Pavlova
- Lomonosov Moscow State University, Faculty of Biology, Leninskie Gory 1-12, 119234, Moscow, Russian Federation
- Federal Research Clinical Center of Physical–Chemical Medicine of the Federal Medical and Biological Agency of Russia, 1a Malaya Pirogovskaya Street, 119435, Moscow, Russian Federation
| | - Aitsana Maslakova
- Lomonosov Moscow State University, Faculty of Biology, Leninskie Gory 1-12, 119234, Moscow, Russian Federation
| | - Kirill Prusakov
- Lomonosov Moscow State University, Faculty of Biology, Leninskie Gory 1-12, 119234, Moscow, Russian Federation
- Federal Research Clinical Center of Physical–Chemical Medicine of the Federal Medical and Biological Agency of Russia, 1a Malaya Pirogovskaya Street, 119435, Moscow, Russian Federation
| | - Dmitry Bagrov
- Lomonosov Moscow State University, Faculty of Biology, Leninskie Gory 1-12, 119234, Moscow, Russian Federation
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Non-Antibody-Based Binders for the Enrichment of Proteins for Analysis by Mass Spectrometry. Biomolecules 2021; 11:biom11121791. [PMID: 34944435 PMCID: PMC8698613 DOI: 10.3390/biom11121791] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Revised: 11/24/2021] [Accepted: 11/27/2021] [Indexed: 02/07/2023] Open
Abstract
There is often a need to isolate proteins from body fluids, such as plasma or serum, prior to further analysis with (targeted) mass spectrometry. Although immunoglobulin or antibody-based binders have been successful in this regard, they possess certain disadvantages, which stimulated the development and validation of alternative, non-antibody-based binders. These binders are based on different protein scaffolds and are often selected and optimized using phage or other display technologies. This review focuses on several non-antibody-based binders in the context of enriching proteins for subsequent liquid chromatography-mass spectrometry (LC-MS) analysis and compares them to antibodies. In addition, we give a brief introduction to approaches for the immobilization of binders. The combination of non-antibody-based binders and targeted mass spectrometry is promising in areas, like regulated bioanalysis of therapeutic proteins or the quantification of biomarkers. However, the rather limited commercial availability of these binders presents a bottleneck that needs to be addressed.
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Tintelott M, Pachauri V, Ingebrandt S, Vu XT. Process Variability in Top-Down Fabrication of Silicon Nanowire-Based Biosensor Arrays. SENSORS (BASEL, SWITZERLAND) 2021; 21:5153. [PMID: 34372390 PMCID: PMC8347659 DOI: 10.3390/s21155153] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 07/27/2021] [Accepted: 07/27/2021] [Indexed: 12/31/2022]
Abstract
Silicon nanowire field-effect transistors (SiNW-FET) have been studied as ultra-high sensitive sensors for the detection of biomolecules, metal ions, gas molecules and as an interface for biological systems due to their remarkable electronic properties. "Bottom-up" or "top-down" approaches that are used for the fabrication of SiNW-FET sensors have their respective limitations in terms of technology development. The "bottom-up" approach allows the synthesis of silicon nanowires (SiNW) in the range from a few nm to hundreds of nm in diameter. However, it is technologically challenging to realize reproducible bottom-up devices on a large scale for clinical biosensing applications. The top-down approach involves state-of-the-art lithography and nanofabrication techniques to cast SiNW down to a few 10s of nanometers in diameter out of high-quality Silicon-on-Insulator (SOI) wafers in a controlled environment, enabling the large-scale fabrication of sensors for a myriad of applications. The possibility of their wafer-scale integration in standard semiconductor processes makes SiNW-FETs one of the most promising candidates for the next generation of biosensor platforms for applications in healthcare and medicine. Although advanced fabrication techniques are employed for fabricating SiNW, the sensor-to-sensor variation in the fabrication processes is one of the limiting factors for a large-scale production towards commercial applications. To provide a detailed overview of the technical aspects responsible for this sensor-to-sensor variation, we critically review and discuss the fundamental aspects that could lead to such a sensor-to-sensor variation, focusing on fabrication parameters and processes described in the state-of-the-art literature. Furthermore, we discuss the impact of functionalization aspects, surface modification, and system integration of the SiNW-FET biosensors on post-fabrication-induced sensor-to-sensor variations for biosensing experiments.
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Affiliation(s)
| | | | | | - Xuan Thang Vu
- Institute of Materials in Electrical Engineering 1, RWTH Aachen University, Sommerfeldstr. 24, 52074 Aachen, Germany; (M.T.); (V.P.); (S.I.)
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15
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Abstract
Functional papers are the subject of extensive research efforts and have already become an irreplaceable part of our modern society. Among other issues, they enable fast and inexpensive detection of a plethora of analytes and simplify laboratory work, for example in medical tests. This article focuses on the molecular and structural fundamentals of paper and the possibilities of functionalization, commercially available assays and their production, as well as on current and future challenges in research in this field.
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Zhang S, Peng B, Li M, Diao H, Wang X, Zhao W, Lin W, Sun N, Lin S. Immobilization of Active Substances in Food Using Self‐Organized Patterned Porous Film via Breath Figure Approach. ChemistrySelect 2021. [DOI: 10.1002/slct.202004827] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Simin Zhang
- National Engineering Research Center of Seafood School of Food Science and Technology Dalian Polytechnic University Dalian 116034 P. R. China
| | - Bo Peng
- National Engineering Research Center of Seafood School of Food Science and Technology Dalian Polytechnic University Dalian 116034 P. R. China
| | - Meng Li
- National Engineering Research Center of Seafood School of Food Science and Technology Dalian Polytechnic University Dalian 116034 P. R. China
| | - Huayu Diao
- National Engineering Research Center of Seafood School of Food Science and Technology Dalian Polytechnic University Dalian 116034 P. R. China
| | - Xingyu Wang
- National Engineering Research Center of Seafood School of Food Science and Technology Dalian Polytechnic University Dalian 116034 P. R. China
| | - Weiping Zhao
- National Engineering Research Center of Seafood School of Food Science and Technology Dalian Polytechnic University Dalian 116034 P. R. China
| | - Wei Lin
- National Engineering Research Center of Seafood School of Food Science and Technology Dalian Polytechnic University Dalian 116034 P. R. China
| | - Na Sun
- National Engineering Research Center of Seafood School of Food Science and Technology Dalian Polytechnic University Dalian 116034 P. R. China
| | - Songyi Lin
- National Engineering Research Center of Seafood School of Food Science and Technology Dalian Polytechnic University Dalian 116034 P. R. China
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Halo-tagged protein immobilization: Effect of halide linkers on peak profile and drug-protein interaction. J Chromatogr A 2021; 1640:461946. [PMID: 33556682 DOI: 10.1016/j.chroma.2021.461946] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 01/18/2021] [Accepted: 01/24/2021] [Indexed: 12/19/2022]
Abstract
In previous work, we have established a one-step method to immobilize halo-tagged proteins onto microspheres through the covalent bond formed between the halo-tag and the halide linkers on the support surface. We observe extremely tailed peaks of most of drugs on the immobilized proteins, which is reasoned by the nonspecific interaction between the linkers and the drugs. To prove this, the current work designed five different halide linkers for the immobilization of beta2-adrenoceptor (β2-AR). We applied the immobilized receptor to systematically realize the effects of these halide linkers on drug-receptor interaction by analyzing peak profiles of five drugs. The retention times and the half-widths of the drugs appeared to be negatively correlated to the atom numbers of the linkers in the range of 6-13 atoms. Subsequent increase of linker atoms resulted in reduced retention times and wider peaks of the drugs. Applying identical linker length, we observed clear reduced retention times and half-widths of the five drugs than the linker in the absence of oxygen atom. Such improvement was dominated by the number of oxygen atoms. These indicated that linker S-4 (2-(2-(2-(2-chloroethoxy) ethoxy) ethoxy) acetic acid) was optimal to eliminate the unwanted non-specific interactions. In comparison with the columns prepared by linker S-1 (6-chlorocaproic acid) and histidine tagged β2-AR, the drugs on the linker S-4 column gave greater dissociation rate constants (e.g. 60.3±0.3 s-1 for salbutamol), which is closer to the data in literatures. Taking together, we concluded that optimization of the linker structure plays particular role in reducing the non-specific interaction between the immobilized protein and the drugs, thereby making the determination of drug-protein interaction more reliable.
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18
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Wang Y, Chang Y, Jia R, Sun H, Tian J, Luo H, Yu H, Shen Z. SpyTag/SpyCatcher cyclization and covalent immobilization in enhancing cephalosporin C acylase stability. Process Biochem 2020. [DOI: 10.1016/j.procbio.2020.02.019] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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19
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Gao J, Chang Z, Tian R, Li P, Ahmad F, Jia X, Liang Q, Zhao X. Reversible and site-specific immobilization of β 2-adrenergic receptor by aptamer-directed method for receptor-drug interaction analysis. J Chromatogr A 2020; 1622:461091. [PMID: 32376022 DOI: 10.1016/j.chroma.2020.461091] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2019] [Revised: 03/23/2020] [Accepted: 03/29/2020] [Indexed: 10/24/2022]
Abstract
Immobilized protein makes a profound impact on the development of assays for drug discovery, diagnosis and in vivo biological interaction analysis. Traditional methods are enormously challenged by the G-protein coupled receptor ascribed to the loss of receptor functions. We introduced a β2-adrenergic receptor (β2-AR) aptamer into the immobilization of the receptor. This was achieved by mixing the receptor conjugated silica gel with cell lysates containing the receptor. We found that the aptamer-directed method makes immobilized β2-AR good stability in seven days and high specificity of ligand recognition at the subtype receptor level. Feasibility of the immobilized β2-AR in drug-receptor interaction analysis was evaluated by injection amount-dependent method, nonlinear chromatography, and peak decay analysis. Salbutamol, methoxyphenamine, ephedrine hydrochloride, clorprenaline, tulobuterol, bambuterol, propranolol and ICI 118551 bound to the receptor through one type of binding sites. The association constants presented good agreement within the three methods but exhibited clear differences from the data by radio-ligand binding assay. Regarding these results, we concluded that the aptamer-directed method will probably become an alternative for reversible and site-specific immobilization of GPCRs directly from complex matrices; the immobilized receptor is qualitative for drug-receptor interaction analysis.
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Affiliation(s)
- Juan Gao
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Ministry of Life Sciences and Medicine, Northwest University, Xi'an710069, China
| | - Zhongman Chang
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Ministry of Life Sciences and Medicine, Northwest University, Xi'an710069, China
| | - Rui Tian
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Ministry of Life Sciences and Medicine, Northwest University, Xi'an710069, China
| | - Ping Li
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Ministry of Life Sciences and Medicine, Northwest University, Xi'an710069, China
| | - Faizan Ahmad
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Ministry of Life Sciences and Medicine, Northwest University, Xi'an710069, China
| | - Xiaoni Jia
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Ministry of Life Sciences and Medicine, Northwest University, Xi'an710069, China; Department of Pharmacy, Xi'an Mental Health Center, Xi'an 710061, China
| | - Qi Liang
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Ministry of Life Sciences and Medicine, Northwest University, Xi'an710069, China; College of Chemistry & Chemical Engineering, Xi'an Shiyou University, Xi'an 710065, China
| | - Xinfeng Zhao
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Ministry of Life Sciences and Medicine, Northwest University, Xi'an710069, China.
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Magro M, Venerando A, Macone A, Canettieri G, Agostinelli E, Vianello F. Nanotechnology-Based Strategies to Develop New Anticancer Therapies. Biomolecules 2020; 10:E735. [PMID: 32397196 PMCID: PMC7278173 DOI: 10.3390/biom10050735] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2020] [Revised: 04/16/2020] [Accepted: 05/06/2020] [Indexed: 12/14/2022] Open
Abstract
The blooming of nanotechnology has made available a limitless landscape of solutions responding to crucial issues in many fields and, nowadays, a wide choice of nanotechnology-based strategies can be adopted to circumvent the limitations of conventional therapies for cancer. Herein, the current stage of nanotechnological applications for cancer management is summarized encompassing the core nanomaterials as well as the available chemical-physical approaches for their surface functionalization and drug ligands as possible therapeutic agents. The use of nanomaterials as vehicles to delivery various therapeutic substances is reported emphasizing advantages, such as the high drug loading, the enhancement of the pay-load half-life and bioavailability. Particular attention was dedicated to highlight the importance of nanomaterial intrinsic features. Indeed, the ability of combining the properties of the transported drug with the ones of the nano-sized carrier can lead to multifunctional theranostic tools. In this view, fluorescence of carbon quantum dots, optical properties of gold nanoparticle and superparamagnetism of iron oxide nanoparticles, are fundamental examples. Furthermore, smart anticancer devices can be developed by conjugating enzymes to nanoparticles, as in the case of bovine serum amine oxidase (BSAO) and gold nanoparticles. The present review is aimed at providing an overall vision on nanotechnological strategies to face the threat of human cancer, comprising opportunities and challenges.
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Affiliation(s)
- Massimiliano Magro
- Department of Comparative Biomedicine and Food Science, University of Padua, Viale dell’Università 16, 35020 Legnaro (PD), Italy; (M.M.); (A.V.)
| | - Andrea Venerando
- Department of Comparative Biomedicine and Food Science, University of Padua, Viale dell’Università 16, 35020 Legnaro (PD), Italy; (M.M.); (A.V.)
| | - Alberto Macone
- Department of Biochemical Sciences, A. Rossi Fanelli’, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy;
| | - Gianluca Canettieri
- Pasteur Laboratory, Department of Molecular Medicine, Sapienza University of Rome, I-00161 Rome, Italy;
- International Polyamines Foundation ‘ETS-ONLUS’, Via del Forte Tiburtino 98, 00159 Rome, Italy
| | - Enzo Agostinelli
- Department of Biochemical Sciences, A. Rossi Fanelli’, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy;
- International Polyamines Foundation ‘ETS-ONLUS’, Via del Forte Tiburtino 98, 00159 Rome, Italy
| | - Fabio Vianello
- Department of Comparative Biomedicine and Food Science, University of Padua, Viale dell’Università 16, 35020 Legnaro (PD), Italy; (M.M.); (A.V.)
- International Polyamines Foundation ‘ETS-ONLUS’, Via del Forte Tiburtino 98, 00159 Rome, Italy
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21
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Affiliation(s)
- Christin Bednarek
- Institute of Organic Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, D-76131 Karlsruhe, Germany
| | - Ilona Wehl
- Institute of Organic Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, D-76131 Karlsruhe, Germany
| | - Nicole Jung
- Institute of Organic Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, D-76131 Karlsruhe, Germany
- Institute of Biological and Chemical Systems—Functional Molecular Systems, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, D-76344 Eggenstein-Leopoldshafen, Germany
| | - Ute Schepers
- Institute of Organic Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, D-76131 Karlsruhe, Germany
- Institute of Functional Interfaces, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, D-76344 Eggenstein-Leopoldshafen, Germany
| | - Stefan Bräse
- Institute of Organic Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, D-76131 Karlsruhe, Germany
- Institute of Biological and Chemical Systems—Functional Molecular Systems, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, D-76344 Eggenstein-Leopoldshafen, Germany
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22
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Agarwal DK, Kushagra A, Ashwin M, Shukla AS, Palaparthy V. Sensitive detection of cardiac troponin-I protein using fabricated piezoresistive microcantilevers by a novel method of asymmetric biofunctionalization. NANOTECHNOLOGY 2020; 31:115503. [PMID: 31751958 DOI: 10.1088/1361-6528/ab5a18] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Microcantilever-based sensor platform has attracted a lot of attention over the time in detection of a variety of molecules due to their miniaturized dimensions. Sensitivity enhancement is an important aspect of such sensors, especially when used for point-of-care diagnostic purpose. However, the major concern while operating these sensors in deflection mode is their sensitivity which mainly relies on selective chemical modification protocols employed on these sensor surfaces. One of the ways of getting better sensitivity is through asymmetric (one side) biofunctionalization of the sensor surface. In the presented work here, we have demonstrated a novel approach of asymmetric biofunctionalization of proteins in overall sensitivity enhancement of piezoresistive silicon nitride-oxide microcantilever sensor platform inside a flow chamber. Herein, using our developed surface chemistry, asymmetrically biofunctionalized microcantilevers first exhibited a greater electrical response in terms of piezoresistance change than their symmetric counterpart in the detection of human immunoglobulins (HIgGs) protein. Finally, these microcantilevers were employed to exhibit the enhanced sensitivity towards the detection of a crucial cardiac marker protein, i.e. Troponin-I (cTnI) down to 250 ng ml-1 using asymmetric biofunctionalization process. This study shows that the developed asymmetric biofunctionalization methodology may be used as a general protocol to detect other important biomarkers of clinical applications with improved sensitivity.
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Affiliation(s)
- Dilip Kumar Agarwal
- Centre for Research in Nanotechnology and Science, Indian Institute of Technology Bombay, Mumbai, India. Centre of Excellence in Nanoelectronics, Dept. of Electrical Engineering, Indian Institute of Technology Bombay, Mumbai, India
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23
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Li Y, Li K, Wang X, An B, Cui M, Pu J, Wei S, Xue S, Ye H, Zhao Y, Liu M, Wang Z, Zhong C. Patterned Amyloid Materials Integrating Robustness and Genetically Programmable Functionality. NANO LETTERS 2019; 19:8399-8408. [PMID: 31512886 DOI: 10.1021/acs.nanolett.9b02324] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The precise manipulation, localization, and assembly of biological and bioinspired molecules into organized structures have greatly promoted material science and bionanotechnology. Further technological innovation calls for new patternable soft materials with the long-sought qualities of environmental tolerance and functional flexibility. Here, we report a patterned amyloid material (PAM) platform for producing hierarchically ordered structures that integrate these material attributes. This platform, combining soft lithography with generic amyloid monomer inks (consisting of genetically engineered biofilm proteins dissolved in hexafluoroisopropanol), along with methanol-assisted curing, enables the spatially controlled deposition and in situ reassembly of amyloid monomers. The resulting patterned structures exhibit spectacular chemical and thermal stability and mechanical robustness under harsh conditions. The PAMs can be programmed for a vast array of multilevel functionalities, including anchoring nanoparticles, enabling diverse fluorescent protein arrays, and serving as self-supporting porous sheets for cellular growth. This PAM platform will not only drive innovation in biomanufacturing but also broaden the applications of patterned soft architectures in optics, electronics, biocatalysis, analytical regents, cell engineering, medicine, and other areas.
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Affiliation(s)
- Yingfeng Li
- Materials and Physical Biology Division, School of Physical Science and Technology , ShanghaiTech University , Shanghai 201210 , China
- Shanghai Institute of Ceramics , Chinese Academy of Sciences , Shanghai 200050 , China
- University of Chinese Academy of Sciences , Beijing 100049 , China
| | - Ke Li
- Materials and Physical Biology Division, School of Physical Science and Technology , ShanghaiTech University , Shanghai 201210 , China
- Shanghai Institute of Ceramics , Chinese Academy of Sciences , Shanghai 200050 , China
| | - Xinyu Wang
- Materials and Physical Biology Division, School of Physical Science and Technology , ShanghaiTech University , Shanghai 201210 , China
| | - Bolin An
- Materials and Physical Biology Division, School of Physical Science and Technology , ShanghaiTech University , Shanghai 201210 , China
| | - Mengkui Cui
- Materials and Physical Biology Division, School of Physical Science and Technology , ShanghaiTech University , Shanghai 201210 , China
| | - Jiahua Pu
- Materials and Physical Biology Division, School of Physical Science and Technology , ShanghaiTech University , Shanghai 201210 , China
| | - Shicao Wei
- Materials and Physical Biology Division, School of Physical Science and Technology , ShanghaiTech University , Shanghai 201210 , China
| | - Shuai Xue
- Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences , East China Normal University , Shanghai 200241 , China
| | - Haifeng Ye
- Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences , East China Normal University , Shanghai 200241 , China
| | - Yanhua Zhao
- Department of Mechanical and Biomedical Engineering , City University of Hong Kong , Hong Kong 999077 , China
| | - Minjie Liu
- Department of Mechanical and Biomedical Engineering , City University of Hong Kong , Hong Kong 999077 , China
| | - Zuankai Wang
- Department of Mechanical and Biomedical Engineering , City University of Hong Kong , Hong Kong 999077 , China
| | - Chao Zhong
- Materials and Physical Biology Division, School of Physical Science and Technology , ShanghaiTech University , Shanghai 201210 , China
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Brittain WJ, Brandsetter T, Prucker O, Rühe J. The Surface Science of Microarray Generation-A Critical Inventory. ACS APPLIED MATERIALS & INTERFACES 2019; 11:39397-39409. [PMID: 31322854 DOI: 10.1021/acsami.9b06838] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Microarrays are powerful tools in biomedical research and have become indispensable for high-throughput multiplex analysis, especially for DNA and protein analysis. The basis for all microarray processing and fabrication is surface modification of a chip substrate and many different strategies to couple probe molecules to such substrates have been developed. We present here a critical assessment of typical biochip generation processes from a surface science point of view. While great progress has been made from a molecular biology point of view on the development of qualitative assays and impressive results have been obtained on the detection of rather low concentrations of DNA or proteins, quantitative chip-based assays are still comparably rare. We argue that lack of stable and reliable deposition chemistries has led in many cases to suboptimal quantitative reproducibility, impeded further progress in microarray development and prevented a more significant penetration of microarray technology into the diagnostic market. We suggest that surface-attached hydrogel networks might be a promising strategy to achieve highly sensitive and quantitatively reproducible microarrays.
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Affiliation(s)
- William J Brittain
- Department of Chemistry & Biochemistry , Texas State University , 601 University Drive , San Marcos , Texas 78666 , United States
- Department of Microsystems Engineering , University of Freiburg , Georges-Köhler-Allee 103 , Freiburg 79110 , Germany
| | - Thomas Brandsetter
- Department of Microsystems Engineering , University of Freiburg , Georges-Köhler-Allee 103 , Freiburg 79110 , Germany
| | - Oswald Prucker
- Department of Microsystems Engineering , University of Freiburg , Georges-Köhler-Allee 103 , Freiburg 79110 , Germany
| | - Jürgen Rühe
- Department of Microsystems Engineering , University of Freiburg , Georges-Köhler-Allee 103 , Freiburg 79110 , Germany
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25
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Kim JK, Abdelhamid MA, Pack SP. Direct immobilization and recovery of recombinant proteins from cell lysates by using EctP1-peptide as a short fusion tag for silica and titania supports. Int J Biol Macromol 2019; 135:969-977. [DOI: 10.1016/j.ijbiomac.2019.05.105] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2019] [Revised: 05/16/2019] [Accepted: 05/18/2019] [Indexed: 10/26/2022]
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Bilal M, Asgher M, Cheng H, Yan Y, Iqbal HMN. Multi-point enzyme immobilization, surface chemistry, and novel platforms: a paradigm shift in biocatalyst design. Crit Rev Biotechnol 2019; 39:202-219. [PMID: 30394121 DOI: 10.1080/07388551.2018.1531822] [Citation(s) in RCA: 149] [Impact Index Per Article: 29.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Engineering enzymes with improved catalytic properties in non-natural environments have been concerned with their diverse industrial and biotechnological applications. Immobilization represents a promising but straightforward route, and immobilized biocatalysts often display higher activities and stabilities compared to free enzymes. Owing to their unique physicochemical characteristics, including the high-specific surface area, exceptional chemical, electrical, and mechanical properties, efficient enzyme loading, and multivalent functionalization, nano-based materials are postulated as suitable carriers for biomolecules or enzyme immobilization. Enzymes immobilized on nanomaterial-based supports are more robust, stable, and recoverable than their pristine counterparts, and are even used for continuous catalytic processes. Furthermore, the unique intrinsic properties of nanomaterials, particularly nanoparticles, also confer the immobilized enzymes to be used for their broader applications. Herein, an effort has been made to present novel potentialities of multi-point enzyme immobilization in the current biotechnological sector. Various nano-based platforms for enzyme/biomolecule immobilization are discussed in the second part of the review. In summary, recent developments in the use of nanomaterials as new carriers to construct robust nano-biocatalytic systems are reviewed, and future trends are pointed out in this article.
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Affiliation(s)
- Muhammad Bilal
- a School of Life Science and Food Engineering , Huaiyin Institute of Technology , Huaian , China
| | - Muhammad Asgher
- b Department of Biochemistry , University of Agriculture Faisalabad , Faisalabad , Pakistan
| | - Hairong Cheng
- c State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology , Shanghai Jiao Tong University , Shanghai , China
| | - Yunjun Yan
- d Key Lab of Molecular Biophysics of Ministry of Education , College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , China
| | - Hafiz M N Iqbal
- e Tecnologico de Monterrey, School of Engineering and Sciences , Campus Monterrey , Monterrey , Mexico
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27
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Bloess S, Beuel T, Krüger T, Sewald N, Dierks T, Fischer von Mollard G. Expression, characterization, and site-specific covalent immobilization of an L-amino acid oxidase from the fungus Hebeloma cylindrosporum. Appl Microbiol Biotechnol 2019; 103:2229-2241. [PMID: 30631897 DOI: 10.1007/s00253-018-09609-7] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2018] [Revised: 12/21/2018] [Accepted: 12/28/2018] [Indexed: 12/17/2022]
Abstract
L-Amino acid oxidases (LAAOs) are flavoproteins, which use oxygen to deaminate L-amino acids and produce the corresponding α-keto acids, ammonia, and hydrogen peroxide. Here we describe the heterologous expression of LAAO4 from the fungus Hebeloma cylindrosporum without signal sequence as fusion protein with a 6His tag in Escherichia coli and its purification. 6His-hcLAAO4 could be activated by exposure to acidic pH, the detergent sodium dodecyl sulfate, or freezing. The enzyme converted 14 proteinogenic L-amino acids with L-glutamine, L-leucine, L-methionine, L-phenylalanine, L-tyrosine, and L-lysine being the best substrates. Methyl esters of these L-amino acids were also accepted. Even ethyl esters were converted but with lower activity. Km values were below 1 mM and vmax values between 19 and 39 U mg-1 for the best substrates with the acid-activated enzyme. The information for an N-terminal aldehyde tag was added to the coding sequence. Co-expressed formylglycine-generating enzyme was used to convert a cysteine residue in the aldehyde tag to a Cα-formylglycine residue. The aldehyde tag did not change the properties of the enzyme. Purified Ald-6His-hcLAAO4 was covalently bound to a hexylamine resin via the Cα-formylglycine residue. The immobilized enzyme could be reused repeatedly to generate phenylpyruvate from L-phenylalanine with a total turnover number of 17,600 and was stable for over 40 days at 25 °C.
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Affiliation(s)
- Svenja Bloess
- Biochemie III, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, 33615, Bielefeld, Germany
| | - Tobias Beuel
- Biochemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, 33615, Bielefeld, Germany
| | - Tobias Krüger
- Organische und Bioorganische Chemie, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, 33615, Bielefeld, Germany
| | - Norbert Sewald
- Organische und Bioorganische Chemie, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, 33615, Bielefeld, Germany
| | - Thomas Dierks
- Biochemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, 33615, Bielefeld, Germany
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Lee C, Hwang A, Jose L, Park JH, Song JK, Shim K, An SSA, Paik HJ. Orientation Controlled Protein Nanocapsules by Enzymatic Removal of a Polymer Template. Biomacromolecules 2018; 19:4219-4227. [PMID: 30265806 DOI: 10.1021/acs.biomac.8b00965] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Protein nanocapsules are potentially useful as functional nanocarriers because of their hollow structure and high biocompatibility and the intrinsic activity of their protein constituents. However, the development of a facile method for the preparation of oriented nanocapsules that retain their protein activity has been challenging. Here we describe the preparation of protein nanocapsules through the enzymatic removal of polymer templates. Nickel(II) nitrilotriacetic acid-end-functionalized poly(lactic acid) (Ni2+-NTA-PLA) was introduced as a polymeric template to immobilize hexa-histidine-tagged green fluorescence protein (His6-GFP) with consistent orientation. Following protein cross-linking and core-degradation, various measurements as a function of degradation time indicated the formation of hollow structures. We also demonstrated orientational control and activity preservation of the protein after capsule preparation. Protein nanocapsules prepared by this method can act as functional containers, taking advantage of the intrinsic function of their constituent proteins without additional modification.
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Affiliation(s)
- Chaeyeon Lee
- Department of Polymer Science and Engineering , Pusan National University , Busan , Korea 46241
| | - Aran Hwang
- Department of Polymer Science and Engineering , Pusan National University , Busan , Korea 46241
| | - Leeja Jose
- Department of Polymer Science and Engineering , Pusan National University , Busan , Korea 46241
| | - Ji Hyun Park
- Research Center for Bio-Based Chemistry , Korea Research Institute of Chemical Technology (KRICT) , Daejeon , Korea 34114
| | - Jae Kwang Song
- Research Center for Bio-Based Chemistry , Korea Research Institute of Chemical Technology (KRICT) , Daejeon , Korea 34114
| | - KyuHwan Shim
- Department of Bionano Technology , Gachon University , Sungnam , Korea 13120
| | - Seong Soo A An
- Department of Bionano Technology , Gachon University , Sungnam , Korea 13120
| | - Hyun-Jong Paik
- Department of Polymer Science and Engineering , Pusan National University , Busan , Korea 46241
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Kienle DF, Falatach RM, Kaar JL, Schwartz DK. Correlating Structural and Functional Heterogeneity of Immobilized Enzymes. ACS NANO 2018; 12:8091-8103. [PMID: 30067333 DOI: 10.1021/acsnano.8b02956] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Many nanobiotechnology applications rely on stable and efficient integration of functional biomacromolecules with synthetic nanomaterials. Unfortunately, the reasons for the ubiquitous loss of activity of immobilized enzymes remain poorly understood due to the difficulty in distinguishing between distinct molecular-level mechanisms. Here, we employ complementary single-molecule fluorescence methods that independently measure the impact of immobilization on the structure and function ( i. e., substrate binding kinetics) of nitroreductase (NfsB). Stochastic statistical modeling methods were used to unambiguously quantify the effects of immobilized NfsB structural dynamics on function, allowing us to explicitly separate effects due to conformation and accessibility. Interestingly, we found that nonspecifically tethered NfsB exhibited enhanced stability compared to site-specifically tethered NfsB; however, the folded state of site-specifically tethered NfsB had faster substrate binding rates, suggesting improved active site accessibility. This demonstrated an unexpected intrinsic trade-off associated with competing bioconjugation methods, suggesting that it may be necessary to balance conformational stability versus active site accessibility. This nuanced view of the impact of immobilization will facilitate a rational approach to the integration of enzymes with synthetic nanomaterials.
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Affiliation(s)
- Daniel F Kienle
- Department of Chemical and Biological Engineering , University of Colorado , Boulder , Colorado 80309 , United States
| | - Rebecca M Falatach
- Department of Chemical and Biological Engineering , University of Colorado , Boulder , Colorado 80309 , United States
| | - Joel L Kaar
- Department of Chemical and Biological Engineering , University of Colorado , Boulder , Colorado 80309 , United States
| | - Daniel K Schwartz
- Department of Chemical and Biological Engineering , University of Colorado , Boulder , Colorado 80309 , United States
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30
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Covalent immobilization of lipase onto chitosan-mesoporous silica hybrid nanomaterials by carboxyl functionalized ionic liquids as the coupling agent. Colloids Surf B Biointerfaces 2018; 165:262-269. [DOI: 10.1016/j.colsurfb.2018.02.033] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2017] [Revised: 01/18/2018] [Accepted: 02/14/2018] [Indexed: 12/18/2022]
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31
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A New Method for Immobilization of His-Tagged Proteins with the Application of Low-Frequency AC Electric Field. SENSORS 2018; 18:s18030784. [PMID: 29510585 PMCID: PMC5876589 DOI: 10.3390/s18030784] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Revised: 02/28/2018] [Accepted: 03/01/2018] [Indexed: 01/09/2023]
Abstract
Continued advancement of protein array, bioelectrode, and biosensor technologies is necessary to develop methods for higher amount and highly oriented immobilization activity of proteins. In pursuit of these goals, we developed a new immobilization method by combining electrostatic transport and subsequent molecular diffusion of protein molecules. Our developed immobilization method is based on a model that transports proteins toward the substrate surface due to steep concentration gradient generated by low-frequency AC electric field. The immobilization of the maximum amounts can be obtained by the application of the AC voltage of 80 Vpp, 20 Hz both for His-tagged Green Fluorescent Protein (GFP) and Discosoma sp. Red Fluorescent Protein (DsRed), used as model proteins. The amounts of the immobilized His-tagged GFP and DsRed were approximately seven-fold higher than that in the absence of the application of low-frequency AC electric field. Furthermore, the positively and negatively charged His-tagged GFP at acidic and alkaline pH were immobilized by applying of low-frequency AC electric field, whereas the non-charged His-tagged GFP at the pH corresponding to its isoelectric point (pI) was not immobilized. Therefore, unless the pH is equal to pI, the immobilization of electrically charged proteins was strongly enhanced through electrostatic transport and subsequent molecular diffusion.
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32
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Adedeji AF, Ambrosetti E, Casalis L, Castronovo M. Spatially Resolved Peptide-DNA Nanoassemblages for Biomarker Detection: A Synergy of DNA-Directed Immobilization and Nanografting. Methods Mol Biol 2018; 1811:151-162. [PMID: 29926451 DOI: 10.1007/978-1-4939-8582-1_10] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Peptide microarrays are becoming a promising alternative to protein microarrays due to the challenges associated with protein immobilization and purification. Here, we put forward a novel experimental-based approach that combines DNA-directed immobilization, nanografting, and atomic force height measurements to immobilize computationally designed cyclic peptide on an ultra-flat gold substrate. This procedure yields peptide-DNA nanoarrays, which can bind to the solvent-exposed site on the Beta-2-microglobulin (β2m).
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Affiliation(s)
- Abimbola Feyisara Adedeji
- Centro di Coordinamento Regionale per le Malattie rare, Azienda Sanitaria Universitaria Integrata di Udine, Udine, Italy
- School of Food Science and Nutrition, University of Leeds, Leeds, UK
| | - Elena Ambrosetti
- Department of Medical Biochemistry and Biophysics (MBB), Karolinska Institutet, Stockholm, Sweden
- Nanoinnovation Lab-Elettra Sincrotrone Trieste, Trieste, Italy
| | | | - Matteo Castronovo
- School of Food Science and Nutrition, University of Leeds, Leeds, UK.
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Wang X, Guo T, Chen J, Li X, Zhou Y, Pan Z. Covalent and selective immobilization of GST fusion proteins with fluorophosphonate-based probes. Chem Commun (Camb) 2018. [DOI: 10.1039/c7cc08888d] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Fluorophosphonate probes covalently immobilize proteins onto solid support by reacting with tyrosine 111 in the GST tag.
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Affiliation(s)
- Xiafeng Wang
- State Key Laboratory of Chemical Oncogenomics
- Key Laboratory of Chemical Genomics
- School of Chemical Biology and Biotechnology
- Shenzhen Graduate School
- Peking University Xili University Town
| | - Tianlin Guo
- State Key Laboratory of Chemical Oncogenomics
- Key Laboratory of Chemical Genomics
- School of Chemical Biology and Biotechnology
- Shenzhen Graduate School
- Peking University Xili University Town
| | - Jiahui Chen
- State Key Laboratory of Chemical Oncogenomics
- Key Laboratory of Chemical Genomics
- School of Chemical Biology and Biotechnology
- Shenzhen Graduate School
- Peking University Xili University Town
| | - Xiaofeng Li
- State Key Laboratory of Chemical Oncogenomics
- Key Laboratory of Chemical Genomics
- School of Chemical Biology and Biotechnology
- Shenzhen Graduate School
- Peking University Xili University Town
| | - Yiqing Zhou
- State Key Laboratory of Chemical Oncogenomics
- Key Laboratory of Chemical Genomics
- School of Chemical Biology and Biotechnology
- Shenzhen Graduate School
- Peking University Xili University Town
| | - Zhengying Pan
- State Key Laboratory of Chemical Oncogenomics
- Key Laboratory of Chemical Genomics
- School of Chemical Biology and Biotechnology
- Shenzhen Graduate School
- Peking University Xili University Town
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Han L, Liu Q, Yang L, Ye T, He Z, Jia L. Facile Oriented Immobilization of Histidine-Tagged Proteins on Nonfouling Cobalt Polyphenolic Self-Assembly Surfaces. ACS Biomater Sci Eng 2017; 3:3328-3337. [PMID: 33445373 DOI: 10.1021/acsbiomaterials.7b00691] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In this study, a completely green and facile protocol to oriented immobilization of histidine-tagged (His-tagged) proteins based on plant polyphenolic tannic acid (TA) is described. This is the first time that TA has been applied as ionic chelators to immobilize His-tagged proteins. To reduce the nonspecific interactions between the TA and immobilized proteins, we assembled nonfouling zwitterionic poly(sulfobetaine methacrylate) (PSBMA) on the TA surface. The use of PSBMA could maintain the high activity of the His-tagged proteins and inhibit the adsorption of untagged protein to the TA surface. Subsequently, the obtained TA/PSBMA film was further chelated with CoII for specific binding to a His-tagged protein. As CoIII is more stable and inert than CoII, the chelated CoII was oxidized to CoIII. Using this approach, His-tagged Chitinase was anchored to TA/PSBMA/CoIII film as a catalyst for the hydrolysis of chitin. The loading capacity of the film for the His-tagged Chitinase can reach ∼4.0 μg/cm2. Moreover, the oriented immobilized Chitinase had high catalytic activity and excellent thermal and storage stability as well as being more resistant to proteolytic digestion by papain. This low-cost and green protein-oriented immobilization strategy may serve as a versatile platform for a range of applications, such as biomaterials, biocatalysis, sensors, drug delivery, and so on.
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Affiliation(s)
- Lulu Han
- Liaoning Key Laboratory of Molecular Recognition and Imaging, School of Life science and Biotechnology, Dalian University of Technology, Dalian 116023, P. R. China
| | - Qi Liu
- Liaoning Key Laboratory of Molecular Recognition and Imaging, School of Life science and Biotechnology, Dalian University of Technology, Dalian 116023, P. R. China
| | - Liwei Yang
- Liaoning Key Laboratory of Molecular Recognition and Imaging, School of Life science and Biotechnology, Dalian University of Technology, Dalian 116023, P. R. China
| | - Tong Ye
- Liaoning Key Laboratory of Molecular Recognition and Imaging, School of Life science and Biotechnology, Dalian University of Technology, Dalian 116023, P. R. China
| | - Zhien He
- Liaoning Key Laboratory of Molecular Recognition and Imaging, School of Life science and Biotechnology, Dalian University of Technology, Dalian 116023, P. R. China
| | - Lingyun Jia
- Liaoning Key Laboratory of Molecular Recognition and Imaging, School of Life science and Biotechnology, Dalian University of Technology, Dalian 116023, P. R. China
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Zeng K, Li Q, Wang J, Yin G, Zhang Y, Xiao C, Fan T, Zhao X, Zheng X. One-step methodology for the direct covalent capture of GPCRs from complex matrices onto solid surfaces based on the bioorthogonal reaction between haloalkane dehalogenase and chloroalkanes. Chem Sci 2017; 9:446-456. [PMID: 29629116 PMCID: PMC5868316 DOI: 10.1039/c7sc03887a] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2017] [Accepted: 10/18/2017] [Indexed: 12/29/2022] Open
Abstract
An approach is established for the specific immobilization of GPCRs from cell lysates that circumvents labor intensive purification procedures and minimize loss of activity.
Protein immobilization techniques play an important role in the development of assays for disease diagnosis and drug discovery. However, many of these approaches are not applicable to transmembrane proteins. G protein-coupled receptors (GPCRs) are the largest protein superfamily encoded by the human genome and are targeted by a quarter of all prescription drugs. GPCRs are highly dynamic and sensitive to changes in the ambient environment, and current immobilization methodologies are not suitable for GPCRs. We used haloalkane dehalogenase (Halo) as an immobilization tag fused to the β2-adrenoceptor (β2-AR), angiotensin II type 1 (AT1) and angiotensin II type 2 (AT2) receptors. The engineered Halo-tag covalently binds to a specific substrate chloroalkane through Asp 106 in the catalytic pocket. The Halo-tagged GPCRs were expressed in Escherichia coli at a suitable yield. Accordingly, we loaded cell lysate containing Halo-tagged GPCRs onto a macroporous silica gel coated with chloroalkane. Morphological characterization indicated a homogeneous monolayer of immobilized Halo-tagged GPCRs on the silica gel surface. The immobilized receptors proved to be surrounded by specific bound phospholipids including PG C18:1/C18:1. We observed a radio-ligand binding ability and ligand-induced conformational changes in the immobilized GPCRs, suggesting the preservation of bioactivity. This method is a one-step approach for the specific immobilization of GPCRs from cell lysates and validates that immobilized receptors retain canonical ligand binding capacity. Our immobilization strategy circumvents labor-intensive purification procedures and minimizes loss of activity. The immobilized receptors can be applied to high-throughput drug and interaction partner screening for GPCRs.
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Affiliation(s)
- Kaizhu Zeng
- Key Laboratory of Resource Biology and Biotechnology in Western China , Ministry of Education , College of Life Sciences , Northwest University , Xi'an 710069 , China . ; ; Tel: +86 029 88302686
| | - Qian Li
- Key Laboratory of Resource Biology and Biotechnology in Western China , Ministry of Education , College of Life Sciences , Northwest University , Xi'an 710069 , China . ; ; Tel: +86 029 88302686
| | - Jing Wang
- Key Laboratory of Resource Biology and Biotechnology in Western China , Ministry of Education , College of Life Sciences , Northwest University , Xi'an 710069 , China . ; ; Tel: +86 029 88302686
| | - Guowei Yin
- Department of Biochemistry and Biophysics , University of North Carolina at Chapel Hill , NC , USA
| | - Yajun Zhang
- Key Laboratory of Resource Biology and Biotechnology in Western China , Ministry of Education , College of Life Sciences , Northwest University , Xi'an 710069 , China . ; ; Tel: +86 029 88302686
| | - Chaoni Xiao
- Key Laboratory of Resource Biology and Biotechnology in Western China , Ministry of Education , College of Life Sciences , Northwest University , Xi'an 710069 , China . ; ; Tel: +86 029 88302686
| | - Taiping Fan
- Key Laboratory of Resource Biology and Biotechnology in Western China , Ministry of Education , College of Life Sciences , Northwest University , Xi'an 710069 , China . ; ; Tel: +86 029 88302686.,Department of Pharmacology , University of Cambridge , Cambridge CB2 1PD , UK
| | - Xinfeng Zhao
- Key Laboratory of Resource Biology and Biotechnology in Western China , Ministry of Education , College of Life Sciences , Northwest University , Xi'an 710069 , China . ; ; Tel: +86 029 88302686
| | - Xiaohui Zheng
- Key Laboratory of Resource Biology and Biotechnology in Western China , Ministry of Education , College of Life Sciences , Northwest University , Xi'an 710069 , China . ; ; Tel: +86 029 88302686
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Oliverio M, Perotto S, Messina GC, Lovato L, De Angelis F. Chemical Functionalization of Plasmonic Surface Biosensors: A Tutorial Review on Issues, Strategies, and Costs. ACS APPLIED MATERIALS & INTERFACES 2017; 9:29394-29411. [PMID: 28796479 PMCID: PMC5593307 DOI: 10.1021/acsami.7b01583] [Citation(s) in RCA: 87] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2017] [Accepted: 08/10/2017] [Indexed: 05/21/2023]
Abstract
In an ideal plasmonic surface sensor, the bioactive area, where analytes are recognized by specific biomolecules, is surrounded by an area that is generally composed of a different material. The latter, often the surface of the supporting chip, is generally hard to be selectively functionalized, with respect to the active area. As a result, cross talks between the active area and the surrounding one may occur. In designing a plasmonic sensor, various issues must be addressed: the specificity of analyte recognition, the orientation of the immobilized biomolecule that acts as the analyte receptor, and the selectivity of surface coverage. The objective of this tutorial review is to introduce the main rational tools required for a correct and complete approach to chemically functionalize plasmonic surface biosensors. After a short introduction, the review discusses, in detail, the most common strategies for achieving effective surface functionalization. The most important issues, such as the orientation of active molecules and spatial and chemical selectivity, are considered. A list of well-defined protocols is suggested for the most common practical situations. Importantly, for the reported protocols, we also present direct comparisons in term of costs, labor demand, and risk vs benefit balance. In addition, a survey of the most used characterization techniques necessary to validate the chemical protocols is reported.
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Affiliation(s)
- Manuela Oliverio
- Department of Health
Science, University Magna Graecia of Catanzaro, Viale Europa−Loc. Germaneto, 88100 Catanzaro, Italy
- Italian Institute of Technology, Via Morego 30, 16163 Genova, Italy
| | - Sara Perotto
- Italian Institute of Technology, Via Morego 30, 16163 Genova, Italy
- Department of Informatics,
Bioengineering, Robotics and Systems Engineering (DIBRIS), Università degli Studi di Genova, Via Balbi 5, 16126 Genova, Italy
| | | | - Laura Lovato
- Italian Institute of Technology, Via Morego 30, 16163 Genova, Italy
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Altissimo M, Kiskinova M, Mincigrucci R, Vaccari L, Guarnaccia C, Masciovecchio C. Perspective: A toolbox for protein structure determination in physiological environment through oriented, 2D ordered, site specific immobilization. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2017; 4:044017. [PMID: 28428974 PMCID: PMC5392127 DOI: 10.1063/1.4981224] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2017] [Accepted: 04/05/2017] [Indexed: 05/19/2023]
Abstract
Revealing the structure of complex biological macromolecules, such as proteins, is an essential step for understanding the chemical mechanisms that determine the diversity of their functions. Synchrotron based X-ray crystallography and cryo-electron microscopy have made major contributions in determining thousands of protein structures even from micro-sized crystals. They suffer from some limitations that have not been overcome, such as radiation damage, the natural inability to crystallize a number of proteins, and experimental conditions for structure determination that are incompatible with the physiological environment. Today, the ultra-short and ultra-bright pulses of X-ray free-electron lasers have made attainable the dream to determine protein structures before radiation damage starts to destroy the samples. However, the signal-to-noise ratio remains a great challenge to obtain usable diffraction patterns from a single protein molecule. With the perspective to overcome these challenges, we describe here a new methodology that has the potential to overcome the signal-to-noise-ratio and protein crystallization limits. Using a multidisciplinary approach, we propose to create ordered, two dimensional protein arrays with defined orientation attached on a self-assembled-monolayer. We develop a literature-based flexible toolbox capable of assembling different kinds of proteins on a functionalized surface and consider using a graphene cover layer that will allow performing experiments with proteins in physiological conditions.
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Affiliation(s)
- M Altissimo
- Elettra Sincrotrone Trieste, S. S. 14 km 163, 34149 Trieste, Basovizza, Italy
| | - M Kiskinova
- Elettra Sincrotrone Trieste, S. S. 14 km 163, 34149 Trieste, Basovizza, Italy
| | - R Mincigrucci
- Elettra Sincrotrone Trieste, S. S. 14 km 163, 34149 Trieste, Basovizza, Italy
| | - L Vaccari
- Elettra Sincrotrone Trieste, S. S. 14 km 163, 34149 Trieste, Basovizza, Italy
| | - C Guarnaccia
- International Centre for Genetic Engineering and Biotechnology, Padriciano 99, 34149 Trieste, Italy
| | - C Masciovecchio
- Elettra Sincrotrone Trieste, S. S. 14 km 163, 34149 Trieste, Basovizza, Italy
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38
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Surface engineering of poly(methylmethacrylate): Effects on fluorescence immunoassay. Biointerphases 2017; 12:02C415. [PMID: 28587470 DOI: 10.1116/1.4984010] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
The authors present surface engineering modifications through chemistry of poly(methylmethacrylate) (PMMA) that have dramatic effects on the result of surface-bound fluorescence immunoassays, both for specific and nonspecific signals. The authors deduce the most important effect to be clustering of antibodies on the surface leading to significant self-quenching. Secondary effects are attributable to the formation of sparse multilayers of antibody. The authors compare PMMA as an antibody support surface with ultraviolet-ozone oxidized PMMA and also to substrates that were, after the oxidation, surface modified by a four-unit poly(ethyleneglycol) carboxylic acid (PEG4), a branched tricarboxylic acid, and a series of carboxylic acid-terminated dendrimers, from generation 1.5 to 5.5. Fluorescence immunoassay and neutron reflectometry were used to compare the apparent antibody surface loading, antigen binding and nonspecific binding on these various surfaces using anti-human IgG as a model antibody, chemically coupled to the surface by amide formation. Simple physical adsorption of the antibody on PMMA resulted in a thick antibody multilayer with small antigen binding capacity. On the carboxylated surfaces, with chemical coupling, a simple monolayer was formed. The authors deduce that antibody clustering was driven by conformational inflexibility and high carboxylate density. The PEG4-modified surface was the most conformationally flexible. The dendrimer-modified interfaces showed a collapse and densification. In fluorescence immunoassay, the optimal combination of high specific and low nonspecific fluorescence signal was found for the G3.5 dendrimer.
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Schöne AC, Roch T, Schulz B, Lendlein A. Evaluating polymeric biomaterial-environment interfaces by Langmuir monolayer techniques. J R Soc Interface 2017; 14:20161028. [PMID: 28468918 PMCID: PMC5454283 DOI: 10.1098/rsif.2016.1028] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2016] [Accepted: 04/05/2017] [Indexed: 12/18/2022] Open
Abstract
Polymeric biomaterials are of specific relevance in medical and pharmaceutical applications due to their wide range of tailorable properties and functionalities. The knowledge about interactions of biomaterials with their biological environment is of crucial importance for developing highly sophisticated medical devices. To achieve optimal in vivo performance, a description at the molecular level is required to gain better understanding about the surface of synthetic materials for tailoring their properties. This is still challenging and requires the comprehensive characterization of morphological structures, polymer chain arrangements and degradation behaviour. The review discusses selected aspects for evaluating polymeric biomaterial-environment interfaces by Langmuir monolayer methods as powerful techniques for studying interfacial properties, such as morphological and degradation processes. The combination of spectroscopic, microscopic and scattering methods with the Langmuir techniques adapted to polymers can substantially improve the understanding of their in vivo behaviour.
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Affiliation(s)
- Anne-Christin Schöne
- Institute of Chemistry, University of Potsdam, Karl-Liebknecht-Strasse 24-25, 14476 Potsdam, Germany
- Institute of Biomaterial Science and Berlin-Brandenburg Centre for Regenerative Therapies (BCRT), Helmholtz-Zentrum Geesthacht, Kantstrasse 55, 14513 Teltow, Germany
| | - Toralf Roch
- Institute of Biomaterial Science and Berlin-Brandenburg Centre for Regenerative Therapies (BCRT), Helmholtz-Zentrum Geesthacht, Kantstrasse 55, 14513 Teltow, Germany
- Helmholtz Virtual Institute-Multifunctional Biomaterials for Medicine, Kantstrasse 55, 14513 Teltow, Germany
| | - Burkhard Schulz
- Institute of Chemistry, University of Potsdam, Karl-Liebknecht-Strasse 24-25, 14476 Potsdam, Germany
- Institute of Biomaterial Science and Berlin-Brandenburg Centre for Regenerative Therapies (BCRT), Helmholtz-Zentrum Geesthacht, Kantstrasse 55, 14513 Teltow, Germany
| | - Andreas Lendlein
- Institute of Chemistry, University of Potsdam, Karl-Liebknecht-Strasse 24-25, 14476 Potsdam, Germany
- Institute of Biomaterial Science and Berlin-Brandenburg Centre for Regenerative Therapies (BCRT), Helmholtz-Zentrum Geesthacht, Kantstrasse 55, 14513 Teltow, Germany
- Helmholtz Virtual Institute-Multifunctional Biomaterials for Medicine, Kantstrasse 55, 14513 Teltow, Germany
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40
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Cao R, Tian W, Shen W. Polysaccharides as protectants for paper-based analytical devices with antibody. Talanta 2017; 165:357-363. [DOI: 10.1016/j.talanta.2016.12.079] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2016] [Revised: 12/25/2016] [Accepted: 12/26/2016] [Indexed: 01/11/2023]
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41
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Care A, Petroll K, Gibson ESY, Bergquist PL, Sunna A. Solid-binding peptides for immobilisation of thermostable enzymes to hydrolyse biomass polysaccharides. BIOTECHNOLOGY FOR BIOFUELS 2017; 10:29. [PMID: 28184244 PMCID: PMC5289021 DOI: 10.1186/s13068-017-0715-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2016] [Accepted: 01/19/2017] [Indexed: 05/04/2023]
Abstract
BACKGROUND Solid-binding peptides (SBPs) bind strongly to a diverse range of solid materials without the need for any chemical reactions. They have been used mainly for the functionalisation of nanomaterials but little is known about their use for the immobilisation of thermostable enzymes and their feasibility in industrial-scale biocatalysis. RESULTS A silica-binding SBP sequence was fused genetically to three thermostable hemicellulases. The resulting enzymes were active after fusion and exhibited identical pH and temperature optima but differing thermostabilities when compared to their corresponding unmodified enzymes. The silica-binding peptide mediated the efficient immobilisation of each enzyme onto zeolite, demonstrating the construction of single enzyme biocatalytic modules. Cross-linked enzyme aggregates (CLEAs) of enzyme preparations either with or without zeolite immobilisation displayed greater activity retention during enzyme recycling than those of free enzymes (without silica-binding peptide) or zeolite-bound enzymes without any crosslinking. CLEA preparations comprising all three enzymes simultaneously immobilised onto zeolite enabled the formation of multiple enzyme biocatalytic modules which were shown to degrade several hemicellulosic substrates. CONCLUSIONS The current work introduced the construction of functional biocatalytic modules for the hydrolysis of simple and complex polysaccharides. This technology exploited a silica-binding SBP to mediate effectively the rapid and simple immobilisation of thermostable enzymes onto readily-available and inexpensive silica-based matrices. A conceptual application of biocatalytic modules consisting of single or multiple enzymes was validated by hydrolysing various hemicellulosic polysaccharides.
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Affiliation(s)
- Andrew Care
- Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia
- ARC Centre of Excellence for Nanoscale BioPhotonics (CNBP), Macquarie University, Sydney, Australia
| | - Kerstin Petroll
- Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia
| | - Emily S. Y. Gibson
- Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia
| | - Peter L. Bergquist
- Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia
- Department of Molecular Medicine & Pathology, Medical School, University of Auckland, Auckland, New Zealand
- Biomolecular Discovery and Design Research Centre, Macquarie University, Sydney, Australia
| | - Anwar Sunna
- Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia
- Biomolecular Discovery and Design Research Centre, Macquarie University, Sydney, Australia
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Chen JB, Neves MA, Thompson M. Biosensor surface attachment of the ovarian cancer biomarker HSP10 via His-tag modification. SENSING AND BIO-SENSING RESEARCH 2016. [DOI: 10.1016/j.sbsr.2016.10.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
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Zare-Eelanjegh E, Bora DK, Rupper P, Schrantz K, Thöny-Meyer L, Maniura-Weber K, Richter M, Faccio G. Affinity-Driven Immobilization of Proteins to Hematite Nanoparticles. ACS APPLIED MATERIALS & INTERFACES 2016; 8:20432-20439. [PMID: 27429157 DOI: 10.1021/acsami.6b03284] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Functional nanoparticles are valuable materials for energy production, bioelectronics, and diagnostic devices. The combination of biomolecules with nanosized material produces a new hybrid material with properties that can exceed the ones of the single components. Hematite is a widely available material that has found application in various sectors such as in sensing and solar energy production. We report a single-step immobilization process based on affinity and achieved by genetically engineering the protein of interest to carry a hematite-binding peptide. Fabricated hematite nanoparticles were then investigated for the immobilization of the two biomolecules C-phycocyanin (CPC) and laccase from Bacillus pumilus (LACC) under mild conditions. Genetic engineering of biomolecules with a hematite-affinity peptide led to a higher extent of protein immobilization and enhanced the catalytic activity of the enzyme.
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Affiliation(s)
- Elaheh Zare-Eelanjegh
- Laboratory for Biointerfaces, Empa, Swiss Federal Laboratories for Materials Science and Technology , Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland
| | - Debajeet K Bora
- Laboratory for High Performance Ceramics, Empa, Swiss Federal Laboratories for Materials Science and Technology , Überlandstrasse 129, 8600 Dübendorf, Switzerland
| | - Patrick Rupper
- Laboratory for Advanced Fibers, Empa, Swiss Federal Laboratories for Materials Science and Technology , Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland
| | - Krisztina Schrantz
- Laboratory for High Performance Ceramics, Empa, Swiss Federal Laboratories for Materials Science and Technology , Überlandstrasse 129, 8600 Dübendorf, Switzerland
| | - Linda Thöny-Meyer
- Laboratory for Biointerfaces, Empa, Swiss Federal Laboratories for Materials Science and Technology , Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland
| | - Katharina Maniura-Weber
- Laboratory for Biointerfaces, Empa, Swiss Federal Laboratories for Materials Science and Technology , Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland
| | - Michael Richter
- Laboratory for Biointerfaces, Empa, Swiss Federal Laboratories for Materials Science and Technology , Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland
| | - Greta Faccio
- Laboratory for Biointerfaces, Empa, Swiss Federal Laboratories for Materials Science and Technology , Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland
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44
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Tung CL, Wong CTT, Fung EYM, Li X. Traceless and Chemoselective Amine Bioconjugation via Phthalimidine Formation in Native Protein Modification. Org Lett 2016; 18:2600-3. [PMID: 27191384 DOI: 10.1021/acs.orglett.6b00983] [Citation(s) in RCA: 67] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
ortho-Phthalaldehyde (OPA) and its derivatives are found to react chemoselectively with amino groups on peptides and proteins rapidly and tracelessly under the physiological condition via formation of phthalimidines, which provides a novel and promising approach when performing bioconjugation on native proteins. The notable advantages of this method over the existing native protein lysine-labeling approaches include a traceless process, a self-reacting, specific and fast reaction, ease of operation, and the ability to use nonhydrolyzable reagents. Its applications have been effectively demonstrated including conjugation of peptides and proteins, and generation of an active PEGlyated l-asparaginase.
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Affiliation(s)
- Chun Ling Tung
- Department of Chemistry, The State Key Laboratory of Synthetic Chemistry, The University of Hong Kong , Hong Kong, China
| | - Clarence T T Wong
- Department of Chemistry, The State Key Laboratory of Synthetic Chemistry, The University of Hong Kong , Hong Kong, China
| | - Eva Yi Man Fung
- Department of Chemistry, The State Key Laboratory of Synthetic Chemistry, The University of Hong Kong , Hong Kong, China
| | - Xuechen Li
- Department of Chemistry, The State Key Laboratory of Synthetic Chemistry, The University of Hong Kong , Hong Kong, China
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Noel S, Fortier C, Murschel F, Belzil A, Gaudet G, Jolicoeur M, De Crescenzo G. Co-immobilization of adhesive peptides and VEGF within a dextran-based coating for vascular applications. Acta Biomater 2016; 37:69-82. [PMID: 27039978 DOI: 10.1016/j.actbio.2016.03.043] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2015] [Revised: 02/11/2016] [Accepted: 03/30/2016] [Indexed: 11/25/2022]
Abstract
UNLABELLED Multifunctional constructs providing a proper environment for adhesion and growth of selected cell types are needed for most tissue engineering and regenerative medicine applications. In this context, vinylsulfone (VS)-modified dextran was proposed as a matrix featuring low-fouling properties as well as multiple versatile moieties. The displayed VS groups could indeed react with thiol, amine or hydroxyl groups, be it for surface grafting, crosslinking or subsequent tethering of biomolecules. In the present study, a library of dextran-VS was produced, grafted to aminated substrates and characterized in terms of degree of VS modification (%VS), cell-repelling properties and potential for the oriented grafting of cysteine-tagged peptides. As a bioactive coating of vascular implants, ECM peptides (e.g. RGD) as well as vascular endothelial growth factor (VEGF) were co-immobilized on one of the most suitable dextran-VS coating (%VS=ca. 50% of saccharides units). Both RGD and VEGF were efficiently tethered at high densities (ca. 1nmol/cm(2) and 50fmol/cm(2), respectively), and were able to promote endothelial cell adhesion as well as proliferation. The latter was enhanced to the same extent as with soluble VEGF and proved selective to endothelial cells over smooth muscle cells. Altogether, multiple biomolecules could be efficiently incorporated into a dextran-VS construct, while maintaining their respective biological activity. STATEMENT OF SIGNIFICANCE This work addresses the need for multifunctional coatings and selective cell response inherent to many tissue engineering and regenerative medicine applications, for instance, vascular graft. More specifically, a library of dextrans was first generated through vinylsulfone (VS) modification. Thoroughly selected dextran-VS provided an ideal platform for unbiased study of cell response to covalently grafted biomolecules. Considering that processes such as healing and angiogenesis require multiple factors acting synergistically, vascular endothelial growth factor (VEGF) was then co-immobilized with the cell adhesive RGD peptide within our dextran coating through a relevant strategy featuring orientation and specificity. Altogether, both adhesive and proliferative cues could be incorporated into our construct with additive, if not synergetic, effects.
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Guzman NA, Guzman DE. An emerging micro-scale immuno-analytical diagnostic tool to see the unseen. Holding promise for precision medicine and P4 medicine. J Chromatogr B Analyt Technol Biomed Life Sci 2016; 1021:14-29. [DOI: 10.1016/j.jchromb.2015.11.026] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2015] [Revised: 11/15/2015] [Accepted: 11/17/2015] [Indexed: 01/10/2023]
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Wegner SV, Schenk FC, Spatz JP. Cobalt(III)-Mediated Permanent and Stable Immobilization of Histidine-Tagged Proteins on NTA-Functionalized Surfaces. Chemistry 2016; 22:3156-62. [PMID: 26809102 DOI: 10.1002/chem.201504465] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2015] [Indexed: 01/16/2023]
Abstract
We present the cobalt(III)-mediated interaction between polyhistidine (His)-tagged proteins and nitrilotriacetic acid (NTA)-modified surfaces as a general approach for a permanent, oriented, and specific protein immobilization. In this approach, we first form the well-established Co(2+) -mediated interaction between NTA and His-tagged proteins and subsequently oxidize the Co(2+) center in the complex to Co(3+) . Unlike conventionally used Ni(2+) - or Co(2+) -mediated immobilization, the resulting Co(3+) -mediated immobilization is resistant toward strong ligands, such as imidazole and ethylenediaminetetraacetic acid (EDTA), and washing off over time because of the high thermodynamic and kinetic stability of the Co(3+) complex. This immobilization method is compatible with a wide variety of surface coatings, including silane self-assembled monolayers (SAMs) on glass, thiol SAMs on gold surfaces, and supported lipid bilayers. Furthermore, once the cobalt center has been oxidized, it becomes inert toward reducing agents, specific and unspecific interactions, so that it can be used to orthogonally functionalize surfaces with multiple proteins. Overall, the large number of available His-tagged proteins and materials with NTA groups make the Co(3+) -mediated interaction an attractive and widely applicable platform for protein immobilization.
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Affiliation(s)
- Seraphine V Wegner
- Department of New Materials and Biosystems, Max Planck Institute for Intelligent Systems, Heisenbergstrasse 3, 70569, Stuttgart, Germany. .,Department of Biophysical Chemistry, University of Heidelberg, Im Neuenheimer Feld 253, 69120, Heidelberg, Germany. .,Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany.
| | - Franziska C Schenk
- Department of New Materials and Biosystems, Max Planck Institute for Intelligent Systems, Heisenbergstrasse 3, 70569, Stuttgart, Germany.,Department of Biophysical Chemistry, University of Heidelberg, Im Neuenheimer Feld 253, 69120, Heidelberg, Germany
| | - Joachim P Spatz
- Department of New Materials and Biosystems, Max Planck Institute for Intelligent Systems, Heisenbergstrasse 3, 70569, Stuttgart, Germany.,Department of Biophysical Chemistry, University of Heidelberg, Im Neuenheimer Feld 253, 69120, Heidelberg, Germany
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Davenport KR, Smith CA, Hofstetter H, Horn JR, Hofstetter O. Site-directed immobilization of a genetically engineered anti-methotrexate antibody via an enzymatically introduced biotin label significantly increases the binding capacity of immunoaffinity columns. J Chromatogr B Analyt Technol Biomed Life Sci 2016; 1021:114-121. [PMID: 26809205 DOI: 10.1016/j.jchromb.2016.01.021] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2015] [Revised: 01/11/2016] [Accepted: 01/12/2016] [Indexed: 10/22/2022]
Abstract
In this study, the effect of random vs. site-directed immobilization techniques on the performance of antibody-based HPLC columns was investigated using a single-domain camelid antibody (VHH) directed against methotrexate (MTX) as a model system. First, the high flow-through support material POROS-OH was activated with disuccinimidyl carbonate (DSC), and the VHH was bound in a random manner via amines located on the protein's surface. The resulting column was characterized by Frontal Affinity Chromatography (FAC). Then, two site-directed techniques were explored to increase column efficiency by immobilizing the antibody via its C-terminus, i.e., away from the antigen-binding site. In one approach, a tetra-lysine tail was added, and the antibody was immobilized onto DSC-activated POROS. In the second site-directed approach, the VHH was modified with the AviTag peptide, and a biotin-residue was enzymatically incorporated at the C-terminus using the biotin ligase BirA. The biotinylated antibody was subsequently immobilized onto NeutrAvidin-derivatized POROS. A comparison of the FAC analyses, which for all three columns showed excellent linearity (R(2)>0.999), revealed that both site-directed approaches yield better results than the random immobilization; the by far highest efficiency, however, was determined for the immunoaffinity column based on AviTag-biotinylated antibody. As proof of concept, all three columns were evaluated for quantification of MTX dissolved in phosphate buffered saline (PBS). Validation using UV-detection showed excellent linearity in the range of 0.04-12μM (R(2)>0.993). The lower limit of detection (LOD) and lower limit of quantification (LLOQ) were found to be independent of the immobilization strategy and were 40nM and 132nM, respectively. The intra- and inter-day precision was below 11.6%, and accuracy was between 90.7% and 112%. To the best of our knowledge, this is the first report of the AviTag-system in chromatography, and the first application of immunoaffinity chromatography for the analysis of MTX.
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Affiliation(s)
- Kaitlynn R Davenport
- Department of Chemistry and Biochemistry, Northern Illinois University, DeKalb, IL 60115-2862, USA
| | - Christopher A Smith
- Department of Chemistry and Biochemistry, Northern Illinois University, DeKalb, IL 60115-2862, USA
| | - Heike Hofstetter
- Department of Chemistry and Biochemistry, Northern Illinois University, DeKalb, IL 60115-2862, USA
| | - James R Horn
- Department of Chemistry and Biochemistry, Northern Illinois University, DeKalb, IL 60115-2862, USA
| | - Oliver Hofstetter
- Department of Chemistry and Biochemistry, Northern Illinois University, DeKalb, IL 60115-2862, USA.
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Agarwal DK, Maheshwari N, Mukherji S, Rao VR. Asymmetric immobilization of antibodies on a piezo-resistive micro-cantilever surface. RSC Adv 2016. [DOI: 10.1039/c6ra01440b] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
For cantilever-based MEMS sensors, selective chemical modification of the sensing surface is used for the detection of chemical and biological analytes.
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Affiliation(s)
- Dilip Kumar Agarwal
- Centre of Excellence in Nanoelectronics
- Dept. of Electrical Engineering
- IIT Bombay
- Mumbai
- India
| | - Nidhi Maheshwari
- Centre of Excellence in Nanoelectronics
- Dept. of Electrical Engineering
- IIT Bombay
- Mumbai
- India
| | - Soumyo Mukherji
- Centre of Excellence in Nanoelectronics
- Dept. of Electrical Engineering
- IIT Bombay
- Mumbai
- India
| | - V. Ramgopal Rao
- Centre of Excellence in Nanoelectronics
- Dept. of Electrical Engineering
- IIT Bombay
- Mumbai
- India
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50
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Liu Y, Yu J. Oriented immobilization of proteins on solid supports for use in biosensors and biochips: a review. Mikrochim Acta 2015. [DOI: 10.1007/s00604-015-1623-4] [Citation(s) in RCA: 167] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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