Mapping the Trajectory of Nucleophilic Substitution at Silicon Using aperi-Substituted Acenaphthyl Scaffold

Phosphorus-centered ion-molecule reactions: benchmark ab initio characterization of the potential energy surfaces of the X- + PH2Y [X, Y = F, Cl, Br, I] systems

In the present work we determine the benchmark relative energies and geometries of all the relevant stationary points of the X- + PH2Y [X, Y = F, Cl, Br, I] identity and non-identity reactions using state-of-the-art electronic-structure methods. These phosphorus-centered ion-molecule reactions follow two main reaction routes: bimolecular nucleophilic substitution (SN2), leading to Y- + PH2X, and proton transfer, resulting in HX + PHY- products. The SN2 route can proceed through Walden-inversion, front-side-attack retention, and double-/multiple-inversion pathways. In addition, we also identify the following product channels: H--formation, PH2-- and PH2-formation, 1PH- and 3PH-formation, H2-formation and HY + PHX- formation. The benchmark classical relative energies are obtained by taking into account the core-correlation, scalar relativistic, and post-(T) corrections, which turn out to be necessary to reach subchemical (<1 kcal mol-1) accuracy of the results. Classical relative energies are augmented with zero-point-energy contributions to gain the benchmark adiabatic energies.

Alternating Stereospecificity upon Central-Atom Change: Dynamics of the F- +PH2 Cl SN 2 Reaction Compared to its C- and N-Centered Analogues

Central-atom effects on bimolecular nucleophilic substitution (SN 2) reactions are well-known in chemistry, however, the atomic-level SN 2 dynamics at phosphorous (P) centers has never been studied. We investigate the dynamics of the F- +PH2 Cl reaction with the quasi-classical trajectory method on a novel full-dimensional analytical potential energy surface fitted on high-level ab initio data. Our computations reveal intermediate dynamics compared to the F- +CH3 Cl and the F- +NH2 Cl SN 2 reactions: phosphorus as central atom leads to a more indirect SN 2 reaction with extensive complex-formation with respect to the carbon-centered one, however, the title reaction is more direct than its N-centered pair. Stereospecificity, characteristic at C-center, does not appear here either, due to the submerged front-side-attack retention path and the repeated entrance-channel inversional motion, whereas the multi-inversion mechanism discovered at nitrogen center is also undermined by the deep Walden-well. At low collision energies, 6 % of the PH2 F products form with retained configuration, mostly through complex-mediated mechanisms, while this ratio reaches 24 % at the highest energy due to the increasing dominance of the direct front-side mechanism and the smaller chance for hitting the deep Walden-inversion minimum. Our results suggest pronounced central-atom effects in SN 2 reactions, which can fundamentally change their (stereo)dynamics.

Exploring the versatile reactivity of the F- + SiH3Cl system on a full-dimensional coupled-cluster potential energy surface

We develop a full-dimensional analytical potential energy surface (PES) for the F- + SiH3Cl reaction using Robosurfer for automatically sampling the configuration space, the robust [CCSD-F12b + BCCD(T) - BCCD]/aug-cc-pVTZ composite level of theory for computing the energy points, and the permutationally invariant polynomial method for fitting. Evolution of the fitting error and the percentage of the unphysical trajectories are monitored as a function of the iteration steps/number of energy points and polynomial order. Quasi-classical trajectory simulations on the new PES reveal rich dynamics resulting in high-probability SN2 (SiH3F + Cl-) and proton-transfer (SiH2Cl- + HF) products as well as several lower-probability channels, such as SiH2F- + HCl, SiH2FCl + H-, SiH2 + FHCl-, SiHFCl- + H2, SiHF + H2 + Cl-, and SiH2 + HF + Cl-. The Walden-inversion and front-side-attack-retention SN2 pathways are found to be competitive, producing nearly racemic products at high collision energies. The detailed atomic-level mechanisms of the various reaction pathways and channels as well as the accuracy of the analytical PES are analyzed along representative trajectories.

In silico capture of noble gas atoms with a light atom molecule

Noble gas atoms (Ng = He, Ne, Ar, and Kr) can be captured in silico with a light atom molecule containing only C, H, Si, O, and B atoms. Extensive density functional theory (DFT) calculations on series of peri-substituted scaffolds indicate that confined spaces (voids) capable to energy efficiently encapsulate and bind Ng atoms are accessible by design of a tripodal peri-substituted ligand, namely, [(5-Ph₂B-xan-4-)₃Si]H (xan = xanthene) comprising (after hydride abstraction) four Lewis acidic sites within the cationic structure [(5-Ph₂B-xan-4-)₃Si]⁺. The host (ligand system) thereby provides an adoptive environment for the guest (Ng atom) to accommodate for its particular size. Whereas considerable chemical interactions are detectable between the ligand system and the heavier Ng atoms Kr and Ar in the host guest complex [(5-Ph₂B-xan-4-)₃Si·Ng]⁺, the lighter Ng atoms Ne and He are rather tolerated by the ligand system instead of being chemically bound to it, nicely highlighting the gradual onset of (weak) chemical bonding along the series He to Kr. A variety of real-space bonding indicators (RSBIs) derived from the calculated electron and pair densities provides valuable insight to the situation of an "isolated atom in a molecule" in case of He, uncovering its size and shape, whereas minute charge rearrangements caused by polarization of the outer electron shell of the larger Ng atoms results in formation of polarized interactions for Ar and Kr with non-negligible covalent bond contributions for Kr. The present study shows that noble gas atoms can be trapped by small light-atom molecules without the forceful conditions necessary using cage structures such as fullerenes, boranes and related compounds or by using super-electrophilic sites like [B₁₂(CN)₁₁]^- if the chelating effect of several Lewis acidic sites within one molecule is employed.

In silico activation of dinitrogen with a light atom molecule

The NN triple bond can be cleaved in silico with a light atom molecule containing only the earth abundant elements C, H, Si, and P. Extensive density functional theory (DFT) computations on various classes of peri-substituted scaffolds containing Lewis acidic and basic sites in the framework of frustrated Lewis pairs (FLP) indicate that the presence of two silyl cations and two P atoms in a flexible but not too flexible arrangement is essential for energy efficient N₂-activation. The non-bonding lone-pair electrons of the P atoms thereby serve as donors towards N₂, whereas the lone-pairs of N₂ donate into the silyl cations. Newly formed lone-pair basins in the N₂-adducts balance surplus charge. Thereby, the N-N bond distance is increased by astonishing 0.3 Å, from 1.1 Å in N₂ gas to 1.4 Å in the adduct, which makes this bond prone to subsequent addition of hydride ions and protonation, forming two secondary amine sites in the process and eventually breaking the NN triple bond. Potential formation of dead-end states, in which the dications ("active states") aversively form a Lewis acid (LA)-Lewis base (LB) bond, or in which the LA and LB sites are too far away from each other to be able to capture N₂, are problematic but might be circumvented by proper choice of spacer molecules, such as acenaphthalene or biphenylene, and the ligands attached to the LA and LB atoms, such as phenyl or mesityl, and by purging the reaction solutions with gaseous N₂ in the initial reaction steps. Charge redistributions via N₂-activation and splitting were monitored by a variety of real-space bonding indicators (RSBIs) derived from the calculated electron and electron pair densities, which provided valuable insight into the bonding situation within the different reaction steps.

High-Level Systematic Ab Initio Comparison of Carbon- and Silicon-Centered SN2 Reactions

We characterize the stationary points along the Walden inversion, front-side attack, and double-inversion pathways of the X^– + CH₃Y and X^– + SiH₃Y [X, Y = F, Cl, Br, I] S_N2 reactions using chemically accurate CCSD(T)-F12b/aug-cc-pVnZ [n = D, T, Q] levels of theory. At the carbon center, Walden inversion dominates and proceeds via prereaction (X^–···H₃CY) and postreaction (XCH₃···Y^–) ion-dipole wells separated by a usually submerged transition state (X–H₃C–Y)⁻, front-side attack occurs over high barriers, double inversion is the lowest-energy retention pathway for X = F, and hydrogen- (F^–···HCH₂Y) and halogen-bonded (X^–···YCH₃) complexes exist in the entrance channel. At the silicon center, Walden inversion proceeds through a single minimum (X–SiH₃–Y)⁻, the front-side attack is competitive via a usually submerged transition state separating pre- and postreaction minima having X–Si–Y angles close to 90°, double inversion occurs over positive, often high barriers, and hydrogen- and halogen-bonded complexes are not found. In addition to the S_N2 channels (Y^– + CH₃X/SiH₃X), we report reaction enthalpies for proton abstraction (HX + CH₂Y^–/SiH₂Y^–), hydride substitution (H^– + CH₂XY/SiH₂XY), XH···Y^– complex formation (XH···Y^– + ¹CH₂/¹SiH₂), and halogen abstraction (XY + CH₃^–/SiH₃^– and XY^– + CH₃/SiH₃).

Mapping of N-C Bond Formation from a Series of Crystalline Peri-Substituted Naphthalenes by Charge Density and Solid-State NMR Methodologies

A combination of charge density studies and solid state nuclear magnetic resonance (NMR) 1 JNC coupling measurements supported by periodic density functional theory (DFT) calculations is used to characterise the transition from an n-π* interaction to bond formation between a nucleophilic nitrogen atom and an electrophilic sp2 carbon atom in a series of crystalline peri-substituted naphthalenes. As the N⋅⋅⋅C distance reduces there is a sharp decrease in the Laplacian derived from increasing charge density between the two groups at ca. N⋅⋅⋅C = 1.8 Å, with the periodic DFT calculations predicting, and heteronuclear spin-echo NMR measurements confirming, the 1 JNC couplings of ≈3-6 Hz for long C-N bonds (1.60-1.65 Å), and 1 JNC couplings of <1 Hz for N⋅⋅⋅C >2.1 Å.

Taking Advantage of Ortho- and Peri-Substitution to Design Nine-Membered P,O,Si-heterocycles*

A family of cyclic phosphine-disiloxane featuring peri-substituted naphthyl(Nap)/acenaphthyl(Ace) scaffolds has been prepared and fully characterized including X-ray structure, which enables a detailed structural analysis. This straightforward synthesis takes advantage of both ortho- and peri-substitution of Nap/Ace-substituted phosphine oxides. The synthetic method allows diversifying the polycyclic aromatic platform (Nap and Ace) as well as the Si substituents (Me and Ph). Despite a strong steric congestion, the P-atom remains reactive toward oxidation or coordination. In particular, Au(I) complex could be prepared. All the compounds display absorption/luminescence in the UV-Vis range. Surprisingly, the P-trivalent derivatives display unexpected luminescence in the green in solid-state.

Silylium Ions: From Elusive Reactive Intermediates to Potent Catalysts

The history of silyl cations has all the makings of a drama but with a happy ending. Being considered reactive intermediates impossible to isolate in the condensed phase for decades, their actual characterization in solution and later in solid state did only fuel the discussion about their existence and initially created a lot of controversy. This perception has completely changed today, and silyl cations and their donor-stabilized congeners are now widely accepted compounds with promising use in synthetic chemistry. This review provides a comprehensive summary of the fundamental facts and principles of the chemistry of silyl cations, including reliable ways of their preparation as well as their physical and chemical properties. The striking features of silyl cations are their enormous electrophilicity and as such reactivity as super Lewis acids as well as fluorophilicity. Known applications rely on silyl cations as reactants, stoichiometric reagents, and promoters where the reaction success is based on their steady regeneration over the course of the reaction. Silyl cations can even be discrete catalysts, thereby opening the next chapter of their way into the toolbox of synthetic methodology.

Intramolecular Halo Stabilization of Silyl Cations-Silylated Halonium- and Bis-Halo-Substituted Siliconium Borates

The stabilizing neighboring effect of halo substituents on silyl cations was tested for a series of peri‐halo substituted acenaphthyl‐based silyl cations 3. The chloro‐ (3 b), bromo‐ (3 c), and iodo‐ (3 d) stabilized cations were synthesized by the Corey protocol. Structural and NMR spectroscopic investigations for cations 3 b–d supported by the results of density functional calculations, which indicate their halonium ion nature. According to the fluorobenzonitrile (FBN) method, the silyl Lewis acidity decreases along the series of halonium ions 3, the fluoronium ion 3 a being a very strong and the iodonium ion 3 d a moderate Lewis acid. Halonium ions 3 b and 3 c react with starting silanes in a substituent redistribution reaction and form siliconium ions 4 b and 4 c. The structure of siliconium borate 4 c₂[B₁₂Br₁₂] reveals the trigonal bipyramidal coordination environment of the silicon atom with the two bromo substituents in the apical positions.

Interaction, bond formation or reaction between a dimethylamino group and an adjacent alkene or aldehyde group in aromatic systems controlled by remote molecular constraints

Control of the spacing between a dimethylamino group and a polarised alkene by remote constraints determines if the groups make a n–π* interaction, form a Me₂N–C bond or a (MeN)CH₂–C bond initiated by the tertiary amino effect.

Chiral Chalcogenyl-Substituted Naphthyl- and Acenaphthyl-Silanes and Their Cations

Cyclic silylated chalconium borates 13[B(C₆F₅)₄] and 14[B(C₆F₅)₄] with peri‐acenaphthyl and peri‐naphthyl skeletons were synthesized from unsymmetrically substituted silanes 3, 4, 6, 7, 9 and 10 using the standard Corey protocol (Chalcogen Ch=O, S, Se, Te). The configuration at the chalcogen atom is trigonal pyramidal for Ch=S, Se, Te, leading to the formation of cis‐ and trans‐isomers in the case of phenylmethylsilyl cations. With the bulkier tert‐butyl group at silicon, the configuration at the chalcogen atoms is predetermined to give almost exclusively the trans‐configurated cyclic silylchalconium ions. The barriers for the inversion of the configuration at the sulfur atoms of sulfonium ions 13 c and 14 a are substantial (72–74 kJ mol⁻¹) as shown by variable temperature NMR spectroscopy. The neighboring group effect of the thiophenyl substituent is sufficiently strong to preserve chiral information at the silicon atom at low temperatures.

Proximity enforced oxidative addition of a strong unpolar σ-Si-Si bond at rhodium(i)

The new bidentate bisphosphino ligand (5-Ph₂P-Ace-6-SiMe₂)₂ (1) binds rhodium(i) chloride and brings it into close proximity to a strong unpolar σ-Si-Si bond, in which it immediately inserts. In the spirocyclic Rh(iii) product of the oxidative addition, (5-Ph₂P-Ace-6-SiMe₂)₂RhCl (2), the two Si atoms are still close enough to engage in weak non-covalent interactions.

Modelling of an aza-Michael reaction from crystalline naphthalene derivatives containing peri–peri interactions: very long N–C bonds?

A correlation between N–C bond formation and CC bond breaking is constructed from the structures of a family of peri-naphthalenes with a second set of peri substituents.

An Experimental Acidity Scale for Intramolecularly Stabilized Silyl Lewis Acids

A new NMR-based Lewis acidity scale is suggested and its application is demonstrated for a family of silyl Lewis acids. The reaction of p-fluorobenzonitrile (FBN) with silyl cations that are internally stabilized by interaction with a remote chalcogenyl or halogen donor yields silylated nitrilium ions with the silicon atom in a trigonal bipyramidal coordination environment. The 19 F NMR chemical shifts and the 1 J(CF) coupling constants of these nitrilium ions vary in a predictable manner with the donor capability of the stabilizing group. The spectroscopic parameters are suitable probes for scaling the acidity of Lewis acids. These new probes allow for the discrimination between very similar Lewis acids, which is not possible with conventional NMR tests, such as the well-established Gutmann-Beckett method.

Revisiting a Historical Concept by Using Quantum Crystallography: Are Phosphate, Sulfate and Perchlorate Anions Hypervalent?

There are many examples of atoms in molecules that violate Lewis' octet rule, because they have more than four electron pairs assigned to their valence. These atoms are referred to as hypervalent. However, hypervalency may be regarded as an artifact arising from Lewis' description of molecules, which is based on the assumption that electrons are localized in two-center two-electron bonds and lone pairs. In the present paper, the isoelectronic phosphate (PO₄ ^3- ), sulfate (SO₄ ^2- ) and perchlorate (ClO₄ ^- ) anions were examined with respect to the concept of hypervalency. Lewis formulas containing a hypervalent central atom exist for all three anions. Based on X-ray wavefunction refinements of high-resolution X-ray diffraction data of representative crystal structures (MgNH₄ PO₄ ⋅6 H₂ O, Li₂ SO₄ ⋅H₂ O, and KClO₄ ), complementary bonding analyses were performed. In this way, experimental information from the new field of quantum crystallography validate long-known facts, or refute long-standing misunderstandings. It is shown that the P-O and S-O bonds are highly polarized covalent bonds and, thus, the increase in the valence population following three-center four-electron bonding is not sufficient to yield hypervalent phosphorus or sulfur atoms, respectively. However, for the highly covalent Cl-O bond, most bonding indicators imply a hypervalent chlorine atom.

Silanediol versus chlorosilanol: hydrolyses and hydrogen-bonding catalyses with fenchole-based silanes

Biphenyl-2,2’-bisfenchyloxydichlorosilane (7, BIFOXSiCl₂) is synthesized and employed as precursor for the new silanols biphenyl-2,2’-bisfenchyloxychlorosilanol (8, BIFOXSiCl(OH)) and biphenyl-2,2’-bisfenchyloxysilanediol (9, BIFOXSi(OH)₂). BIFOXSiCl₂ (7) shows a remarkable stability against hydrolysis, yielding silanediol 9 under enforced conditions. A kinetic study for the hydrolysis of dichlorosilane 7 shows a 263 times slower reaction compared to reference bis-(2,4,6-tri-tert-butylphenoxy)dichlorosilane (14), known for its low hydrolytic reactivity. Computational analyses explain the slow hydrolyses of BIFOXSiCl₂ (7) to BIFOXSiCl(OH) (8, E_a = 32.6 kcal mol⁻¹) and BIFOXSiCl(OH) (8) to BIFOXSi(OH)₂ (9, E_a = 31.4 kcal mol⁻¹) with high activation barriers, enforced by endo fenchone units. Crystal structure analyses of silanediol 9 with acetone show shorter hydrogen bonds between the Si–OH groups and the oxygen of the bound acetone (OH···O 1.88(3)–2.05(2) Å) than with chlorosilanol 8 (OH···2.16(0) Å). Due to its two hydroxy units, the silanediol 9 shows higher catalytic activity as hydrogen bond donor than chlorosilanol 8, e.g., C–C coupling N-acyl Mannich reaction of silyl ketene acetals 11 with N-acylisoquinolinium ions (up to 85% yield and 12% ee), reaction of 1-chloroisochroman (18) and silyl ketene acetals 11 (up to 85% yield and 5% ee), reaction of chromen-4-one (20) and silyl ketene acetals 11 (up to 98% yield and 4% ee).