1
|
Vernes SC, Devanna P, Hörpel SG, Alvarez van Tussenbroek I, Firzlaff U, Hagoort P, Hiller M, Hoeksema N, Hughes GM, Lavrichenko K, Mengede J, Morales AE, Wiesmann M. The pale spear-nosed bat: A neuromolecular and transgenic model for vocal learning. Ann N Y Acad Sci 2022; 1517:125-142. [PMID: 36069117 PMCID: PMC9826251 DOI: 10.1111/nyas.14884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Vocal learning, the ability to produce modified vocalizations via learning from acoustic signals, is a key trait in the evolution of speech. While extensively studied in songbirds, mammalian models for vocal learning are rare. Bats present a promising study system given their gregarious natures, small size, and the ability of some species to be maintained in captive colonies. We utilize the pale spear-nosed bat (Phyllostomus discolor) and report advances in establishing this species as a tractable model for understanding vocal learning. We have taken an interdisciplinary approach, aiming to provide an integrated understanding across genomics (Part I), neurobiology (Part II), and transgenics (Part III). In Part I, we generated new, high-quality genome annotations of coding genes and noncoding microRNAs to facilitate functional and evolutionary studies. In Part II, we traced connections between auditory-related brain regions and reported neuroimaging to explore the structure of the brain and gene expression patterns to highlight brain regions. In Part III, we created the first successful transgenic bats by manipulating the expression of FoxP2, a speech-related gene. These interdisciplinary approaches are facilitating a mechanistic and evolutionary understanding of mammalian vocal learning and can also contribute to other areas of investigation that utilize P. discolor or bats as study species.
Collapse
Affiliation(s)
- Sonja C. Vernes
- School of BiologyUniversity of St AndrewsSt AndrewsUK,Neurogenetics of Vocal Communication GroupMax Planck Institute for PsycholinguisticsNijmegenThe Netherlands
| | - Paolo Devanna
- School of BiologyUniversity of St AndrewsSt AndrewsUK,Neurogenetics of Vocal Communication GroupMax Planck Institute for PsycholinguisticsNijmegenThe Netherlands
| | - Stephen Gareth Hörpel
- School of BiologyUniversity of St AndrewsSt AndrewsUK,Neurogenetics of Vocal Communication GroupMax Planck Institute for PsycholinguisticsNijmegenThe Netherlands,TUM School of Life SciencesTechnical University of MunichFreisingGermany
| | - Ine Alvarez van Tussenbroek
- School of BiologyUniversity of St AndrewsSt AndrewsUK,Neurogenetics of Vocal Communication GroupMax Planck Institute for PsycholinguisticsNijmegenThe Netherlands
| | - Uwe Firzlaff
- TUM School of Life SciencesTechnical University of MunichFreisingGermany
| | - Peter Hagoort
- Neurobiology of Language DepartmentMax Planck Institute for PsycholinguisticsNijmegenThe Netherlands
| | - Michael Hiller
- LOEWE Centre for Translational Biodiversity Genomics, Faculty of Biosciences, Senckenberg Research Institute, Goethe‐UniversityFrankfurtGermany
| | - Nienke Hoeksema
- Neurogenetics of Vocal Communication GroupMax Planck Institute for PsycholinguisticsNijmegenThe Netherlands,Neurobiology of Language DepartmentMax Planck Institute for PsycholinguisticsNijmegenThe Netherlands
| | - Graham M. Hughes
- School of Biology and Environmental ScienceUniversity College DublinBelfieldIreland
| | - Ksenia Lavrichenko
- Neurogenetics of Vocal Communication GroupMax Planck Institute for PsycholinguisticsNijmegenThe Netherlands
| | - Janine Mengede
- Neurogenetics of Vocal Communication GroupMax Planck Institute for PsycholinguisticsNijmegenThe Netherlands
| | - Ariadna E. Morales
- LOEWE Centre for Translational Biodiversity Genomics, Faculty of Biosciences, Senckenberg Research Institute, Goethe‐UniversityFrankfurtGermany
| | - Maximilian Wiesmann
- Department of Medical ImagingAnatomyRadboud University Medical Center, Donders Institute for Brain, Cognition & Behavior, Center for Medical Neuroscience, Preclinical Imaging Center PRIME, Radboud Alzheimer CenterNijmegenThe Netherlands
| |
Collapse
|
2
|
Cholecystokinin B receptor gene polymorphism (rs2941026) is associated with anxious personality and suicidal thoughts in a longitudinal study. Acta Neuropsychiatr 2022; 34:201-211. [PMID: 34924075 DOI: 10.1017/neu.2021.41] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
OBJECTIVES Cholecystokinin is a neuropeptide with a role in the neurobiology of adaptive behaviour that is implicated in anxiety disorders, while the underlying mechanisms currently remain insufficiently explained. The rs2941026 variation in the cholecystokinin B receptor gene has previously been associated with trait anxiety. Our aim was to investigate associations between the CCKB receptor gene polymorphism rs2941026 with anxiety, personality, depressiveness and suicidality in a longitudinal study of late adolescence and early adulthood. METHODS We used reports on trait and state anxiety, depressiveness and suicidal thoughts, as well as Affective Neuroscience Personality Scales, from the two birth cohorts of the Estonian Children Personality, Behaviour and Health Study. We measured associations between the CCKBR gene rs2941026 and anxiety-related phenotypes both longitudinally and cross-sectionally at ages 15, 18, 25 and 33. RESULTS Homozygosity for both alleles of the CCKBR rs2941026 was associated with higher trait and state anxiety in the longitudinal analysis. Cross-sectional comparisons were statistically significant at ages 18 and 25 for trait anxiety and at ages 25 and 33 for state anxiety. Higher depressiveness and suicidal thoughts were associated with the A/A genotype at age 18. Additionally, homozygosity for the A-allele was related to higher FEAR and SADNESS in the Affective Neuroscience Personality Scales. The genotype effects were more apparent in females, who displayed higher levels of negative affect overall. CONCLUSIONS CCKBR genotype is persistently associated with negative affect in adolescence and young adulthood. The association of the CCKBR rs2941026 genotype with anxiety-related phenotypes is more pronounced in females.
Collapse
|
3
|
Belekhova MG, Kenigfest NB, Chmykhova NM. Evolutionary Formation and Functional
Significance
of the Core–Belt Pattern of Neural Organization of Rostral Auditory
Centers in Vertebrates. J EVOL BIOCHEM PHYS+ 2020. [DOI: 10.1134/s0022093020040018] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
|
4
|
Lovell PV, Wirthlin M, Kaser T, Buckner AA, Carleton JB, Snider BR, McHugh AK, Tolpygo A, Mitra PP, Mello CV. ZEBrA: Zebra finch Expression Brain Atlas-A resource for comparative molecular neuroanatomy and brain evolution studies. J Comp Neurol 2020; 528:2099-2131. [PMID: 32037563 DOI: 10.1002/cne.24879] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Revised: 01/22/2020] [Accepted: 01/25/2020] [Indexed: 12/14/2022]
Abstract
An in-depth understanding of the genetics and evolution of brain function and behavior requires a detailed mapping of gene expression in functional brain circuits across major vertebrate clades. Here we present the Zebra finch Expression Brain Atlas (ZEBrA; www.zebrafinchatlas.org, RRID: SCR_012988), a web-based resource that maps the expression of genes linked to a broad range of functions onto the brain of zebra finches. ZEBrA is a first of its kind gene expression brain atlas for a bird species and a first for any sauropsid. ZEBrA's >3,200 high-resolution digital images of in situ hybridized sections for ~650 genes (as of June 2019) are presented in alignment with an annotated histological atlas and can be browsed down to cellular resolution. An extensive relational database connects expression patterns to information about gene function, mouse expression patterns and phenotypes, and gene involvement in human diseases and communication disorders. By enabling brain-wide gene expression assessments in a bird, ZEBrA provides important substrates for comparative neuroanatomy and molecular brain evolution studies. ZEBrA also provides unique opportunities for linking genetic pathways to vocal learning and motor control circuits, as well as for novel insights into the molecular basis of sex steroids actions, brain dimorphisms, reproductive and social behaviors, sleep function, and adult neurogenesis, among many fundamental themes.
Collapse
Affiliation(s)
- Peter V Lovell
- Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, Oregon
| | - Morgan Wirthlin
- Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, Oregon
| | - Taylor Kaser
- Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, Oregon
| | - Alexa A Buckner
- Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, Oregon
| | - Julia B Carleton
- Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, Oregon
| | - Brian R Snider
- Center for Spoken Language Understanding, Institute on Development and Disability, Oregon Health and Science University, Portland, Oregon
| | - Anne K McHugh
- Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, Oregon
| | | | - Partha P Mitra
- Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
| | - Claudio V Mello
- Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, Oregon
| |
Collapse
|
5
|
Cholecystokinin in the central nervous system of the sea lamprey Petromyzon marinus: precursor identification and neuroanatomical relationships with other neuronal signalling systems. Brain Struct Funct 2019; 225:249-284. [PMID: 31807925 DOI: 10.1007/s00429-019-01999-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2019] [Accepted: 11/27/2019] [Indexed: 12/23/2022]
Abstract
Cholecystokinin (CCK) is a neuropeptide that modulates processes such as digestion, satiety, and anxiety. CCK-type peptides have been characterized in jawed vertebrates and invertebrates, but little is known about CCK-type signalling in the most ancient group of vertebrates, the agnathans. Here, we have cloned and sequenced a cDNA encoding a sea lamprey (Petromyzon marinus L.) CCK-type precursor (PmCCK), which contains a CCK-type octapeptide sequence (PmCCK-8) that is highly similar to gnathostome CCKs. Using mRNA in situ hybridization, the distribution of PmCCK-expressing neurons was mapped in the CNS of P. marinus. This revealed PmCCK-expressing neurons in the hypothalamus, posterior tubercle, prethalamus, nucleus of the medial longitudinal fasciculus, midbrain tegmentum, isthmus, rhombencephalic reticular formation, and the putative nucleus of the solitary tract. Some PmCCK-expressing neuronal populations were only observed in adults, revealing important differences with larvae. We generated an antiserum to PmCCK-8 to enable immunohistochemical analysis of CCK expression, which revealed that GABA or glutamate, but not serotonin, tyrosine hydroxylase or neuropeptide Y, is co-expressed in some PmCCK-8-immunoreactive (ir) neurons. Importantly, this is the first demonstration of co-localization of GABA and CCK in neurons of a non-mammalian vertebrate. We also characterized extensive cholecystokinergic fibre systems of the CNS, including innervation of habenular subnuclei. A conspicuous PmCCK-8-ir tract ascending in the lateral rhombencephalon selectively innervates a glutamatergic population in the dorsal isthmic grey. Interestingly, this tract is reminiscent of the secondary gustatory/visceral tract of teleosts. In conclusion, this study provides important new information on the evolution of the cholecystokinergic system in vertebrates.
Collapse
|
6
|
Shimmura T, Tamura M, Ohashi S, Sasaki A, Yamanaka T, Nakao N, Ihara K, Okamura S, Yoshimura T. Cholecystokinin induces crowing in chickens. Sci Rep 2019; 9:3978. [PMID: 30850691 PMCID: PMC6408447 DOI: 10.1038/s41598-019-40746-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Accepted: 02/21/2019] [Indexed: 11/25/2022] Open
Abstract
Animals that communicate using sound are found throughout the animal kingdom. Interestingly, in contrast to human vocal learning, most animals can produce species-specific patterns of vocalization without learning them from their parents. This phenomenon is called innate vocalization. The underlying molecular basis of both vocal learning in humans and innate vocalization in animals remains unknown. The crowing of a rooster is also innately controlled, and the upstream center is thought to be localized in the nucleus intercollicularis (ICo) of the midbrain. Here, we show that the cholecystokinin B receptor (CCKBR) is a regulatory gene involved in inducing crowing in roosters. Crowing is known to be a testosterone (T)-dependent behavior, and it follows that roosters crow but not hens. Similarly, T-administration induces chicks to crow. By using RNA-sequencing to compare gene expression in the ICo between the two comparison groups that either crow or do not crow, we found that CCKBR expression was upregulated in T-containing groups. The expression of CCKBR and its ligand, cholecystokinin (CCK), a neurotransmitter, was observed in the ICo. We also showed that crowing was induced by intracerebroventricular administration of an agonist specific for CCKBR. Our findings therefore suggest that the CCK system induces innate vocalization in roosters.
Collapse
Affiliation(s)
- Tsuyoshi Shimmura
- Laboratory of Animal Integrative Physiology, Nagoya University, Nagoya, Aichi, 464-8601, Japan. .,Division of Seasonal Biology, National Institute for Basic Biology, Okazaki, Aichi, 444-8585, Japan. .,Department of Biological Production, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.
| | - Mai Tamura
- Laboratory of Animal Integrative Physiology, Nagoya University, Nagoya, Aichi, 464-8601, Japan
| | - Shosei Ohashi
- Laboratory of Animal Integrative Physiology, Nagoya University, Nagoya, Aichi, 464-8601, Japan
| | - Asuka Sasaki
- Laboratory of Animal Integrative Physiology, Nagoya University, Nagoya, Aichi, 464-8601, Japan
| | - Takamichi Yamanaka
- Laboratory of Animal Integrative Physiology, Nagoya University, Nagoya, Aichi, 464-8601, Japan
| | - Nobuhiro Nakao
- Faculty of Applied Life Science, Nippon Veterinary and Life Science University, Musashino, Tokyo, 180-8602, Japan
| | - Kunio Ihara
- Center for Gene Research, Nagoya University, Nagoya, Aichi, 464-8601, Japan
| | - Shinsaku Okamura
- Laboratory of Animal Integrative Physiology, Nagoya University, Nagoya, Aichi, 464-8601, Japan
| | - Takashi Yoshimura
- Laboratory of Animal Integrative Physiology, Nagoya University, Nagoya, Aichi, 464-8601, Japan. .,Avian Bioscience Research Center, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi, 464-8601, Japan. .,Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Aichi, 464-8601, Japan. .,Division of Seasonal Biology, National Institute for Basic Biology, Okazaki, Aichi, 444-8585, Japan.
| |
Collapse
|
7
|
Urotensin-related gene transcripts mark developmental emergence of the male forebrain vocal control system in songbirds. Sci Rep 2019; 9:816. [PMID: 30692609 PMCID: PMC6349858 DOI: 10.1038/s41598-018-37057-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2018] [Accepted: 11/25/2018] [Indexed: 12/31/2022] Open
Abstract
Songbirds communicate through learned vocalizations, using a forebrain circuit with convergent similarity to vocal-control circuitry in humans. This circuit is incomplete in female zebra finches, hence only males sing. We show that the UTS2B gene, encoding Urotensin-Related Peptide (URP), is uniquely expressed in a key pre-motor vocal nucleus (HVC), and specifically marks the neurons that form a male-specific projection that encodes timing features of learned song. UTS2B-expressing cells appear early in males, prior to projection formation, but are not observed in the female nucleus. We find no expression evidence for canonical receptors within the vocal circuit, suggesting either signalling to other brain regions via diffusion or transduction through other receptor systems. Urotensins have not previously been implicated in vocal control, but we find an annotation in Allen Human Brain Atlas of increased UTS2B expression within portions of human inferior frontal cortex implicated in human speech and singing. Thus UTS2B (URP) is a novel neural marker that may have conserved functions for vocal communication.
Collapse
|
8
|
Lovell PV, Huizinga NA, Friedrich SR, Wirthlin M, Mello CV. The constitutive differential transcriptome of a brain circuit for vocal learning. BMC Genomics 2018; 19:231. [PMID: 29614959 PMCID: PMC5883274 DOI: 10.1186/s12864-018-4578-0] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2017] [Accepted: 03/02/2018] [Indexed: 01/25/2023] Open
Abstract
Background The ability to imitate the vocalizations of other organisms, a trait known as vocal learning, is shared by only a few organisms, including humans, where it subserves the acquisition of speech and language, and 3 groups of birds. In songbirds, vocal learning requires the coordinated activity of a set of specialized brain nuclei referred to as the song control system. Recent efforts have revealed some of the genes that are expressed in these vocal nuclei, however a thorough characterization of the transcriptional specializations of this system is still missing. We conducted a rigorous and comprehensive analysis of microarrays, and conducted a separate analysis of 380 genes by in situ hybridizations in order to identify molecular specializations of the major nuclei of the song system of zebra finches (Taeniopygia guttata), a songbird species. Results Our efforts identified more than 3300 genes that are differentially regulated in one or more vocal nuclei of adult male birds compared to the adjacent brain regions. Bioinformatics analyses provided insights into the possible involvement of these genes in molecular pathways such as cellular morphogenesis, intrinsic cellular excitability, neurotransmission and neuromodulation, axonal guidance and cela-to-cell interactions, and cell survival, which are known to strongly influence the functional properties of the song system. Moreover, an in-depth analysis of specific gene families with known involvement in regulating the development and physiological properties of neuronal circuits provides further insights into possible modulators of the song system. Conclusion Our study represents one of the most comprehensive molecular characterizations of a brain circuit that evolved to facilitate a learned behavior in a vertebrate. The data provide novel insights into possible molecular determinants of the functional properties of the song control circuitry. It also provides lists of compelling targets for pharmacological and genetic manipulations to elucidate the molecular regulation of song behavior and vocal learning. Electronic supplementary material The online version of this article (10.1186/s12864-018-4578-0) contains supplementary material, which is available to authorized users.
Collapse
Affiliation(s)
- Peter V Lovell
- Department of Behavioral Neuroscience, Oregon Health and Sciences University, 3181 Sam Jackson Park Rd L470, Portland, OR, USA
| | - Nicole A Huizinga
- Department of Behavioral Neuroscience, Oregon Health and Sciences University, 3181 Sam Jackson Park Rd L470, Portland, OR, USA
| | - Samantha R Friedrich
- Department of Behavioral Neuroscience, Oregon Health and Sciences University, 3181 Sam Jackson Park Rd L470, Portland, OR, USA
| | - Morgan Wirthlin
- Department of Behavioral Neuroscience, Oregon Health and Sciences University, 3181 Sam Jackson Park Rd L470, Portland, OR, USA.,Current affiliation: Computational Biology, Carnegie Mellon University, Pittsburgh, PA, USA
| | - Claudio V Mello
- Department of Behavioral Neuroscience, Oregon Health and Sciences University, 3181 Sam Jackson Park Rd L470, Portland, OR, USA.
| |
Collapse
|
9
|
Distinct Neural Properties in the Low-Frequency Region of the Chicken Cochlear Nucleus Magnocellularis. eNeuro 2017; 4:eN-NWR-0016-17. [PMID: 28413822 PMCID: PMC5388668 DOI: 10.1523/eneuro.0016-17.2017] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2017] [Revised: 02/17/2017] [Accepted: 03/05/2017] [Indexed: 12/03/2022] Open
Abstract
Topography in the avian cochlear nucleus magnocellularis (NM) is represented as gradually increasing characteristic frequency (CF) along the caudolateral-to-rostromedial axis. In this study, we characterized the organization and cell biophysics of the caudolateral NM (NMc) in chickens (Gallus gallus). Examination of cellular and dendritic architecture first revealed that NMc contains small neurons and extensive dendritic processes, in contrast to adendritic, large neurons located more rostromedially. Individual dye-filling study further demonstrated that NMc is divided into two subregions, with NMc2 neurons having larger and more complex dendritic fields than NMc1. Axonal tract tracing studies confirmed that NMc1 and NMc2 neurons receive afferent inputs from the auditory nerve and the superior olivary nucleus, similar to the adendritic NM. However, the auditory axons synapse with NMc neurons via small bouton-like terminals, unlike the large end bulb synapses on adendritic NM neurons. Immunocytochemistry demonstrated that most NMc2 neurons express cholecystokinin but not calretinin, distinct from NMc1 and adendritic NM neurons that are cholecystokinin negative and mostly calretinin positive. Finally, whole-cell current clamp recordings revealed that NMc neurons require significantly lower threshold current for action potential generation than adendritic NM neurons. Moreover, in contrast to adendritic NM neurons that generate a single-onset action potential, NMc neurons generate multiple action potentials to suprathreshold sustained depolarization. Taken together, our data indicate that NMc contains multiple neuron types that are structurally, connectively, molecularly, and physiologically different from traditionally defined NM neurons, emphasizing specialized neural properties for processing low-frequency sounds.
Collapse
|
10
|
Surbhi, Rastogi A, Malik S, Rani S, Kumar V. Seasonal neuronal plasticity in song-control and auditory forebrain areas in subtropical nonmigratory and palearctic-indian migratory male songbirds. J Comp Neurol 2016; 524:2914-29. [DOI: 10.1002/cne.24000] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2015] [Revised: 03/08/2016] [Accepted: 03/09/2016] [Indexed: 12/21/2022]
Affiliation(s)
- Surbhi
- DST-IRHPA Center for Excellence in Biological Rhythms Research and Indo-U.S. Center for Biological Timing, University of Delhi; Delhi 110 007 India
- Department of Zoology; University of Delhi; Delhi 110 007 India
| | - Ashutosh Rastogi
- DST-IRHPA Center for Excellence in Biological Rhythms Research and Indo-U.S. Center for Biological Timing, University of Delhi; Delhi 110 007 India
- Department of Zoology; University of Lucknow; Lucknow 226 007 India
| | - Shalie Malik
- DST-IRHPA Center for Excellence in Biological Rhythms Research and Indo-U.S. Center for Biological Timing, University of Delhi; Delhi 110 007 India
- Department of Zoology; University of Lucknow; Lucknow 226 007 India
| | - Sangeeta Rani
- DST-IRHPA Center for Excellence in Biological Rhythms Research and Indo-U.S. Center for Biological Timing, University of Delhi; Delhi 110 007 India
- Department of Zoology; University of Lucknow; Lucknow 226 007 India
| | - Vinod Kumar
- DST-IRHPA Center for Excellence in Biological Rhythms Research and Indo-U.S. Center for Biological Timing, University of Delhi; Delhi 110 007 India
- Department of Zoology; University of Delhi; Delhi 110 007 India
| |
Collapse
|
11
|
Living without DAT: Loss and compensation of the dopamine transporter gene in sauropsids (birds and reptiles). Sci Rep 2015; 5:14093. [PMID: 26364979 PMCID: PMC4894405 DOI: 10.1038/srep14093] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2015] [Accepted: 08/18/2015] [Indexed: 11/17/2022] Open
Abstract
The dopamine transporter (DAT) is a major regulator of synaptic dopamine (DA) availability. It plays key roles in motor control and motor learning, memory formation, and reward-seeking behavior, is a major target of cocaine and methamphetamines, and has been assumed to be conserved among vertebrates. We have found, however, that birds, crocodiles, and lizards lack the DAT gene. We also found that the unprecedented loss of this important gene is compensated for by the expression of the noradrenaline transporter (NAT) gene, and not the serotonin transporter genes, in dopaminergic cells, which explains the peculiar pharmacology of the DA reuptake activity previously noted in bird striatum. This unexpected pattern contrasts with that of ancestral vertebrates (e.g. fish) and mammals, where the NAT gene is selectively expressed in noradrenergic cells. DA circuits in birds/reptiles and mammals thus operate with an analogous reuptake mechanism exerted by different genes, bringing new insights into gene expression regulation in dopaminergic cells and the evolution of a key molecular player in reward and addiction pathways.
Collapse
|
12
|
Carleton J, Lovell P, McHugh A, Marzulla T, Horback K, Mello C. An optimized protocol for high-throughput in situ hybridization of zebra finch brain. Cold Spring Harb Protoc 2014; 2014:1249-58. [PMID: 25342071 PMCID: PMC4589143 DOI: 10.1101/pdb.prot084582] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
In situ hybridization (ISH) is a sensitive technique for documenting the tissue distribution of mRNAs. Advanced nonradioactive ISH methods that are based on the use of digoxigenin (DIG)-labeled probes and chromogenic detection have better spatial resolution than emulsion autoradiography techniques and, when paired with high-resolution digital imaging, allow for large-scale profiling of gene expression at cellular resolution within a histological context. However, technical challenges restrict the number of genes that can be investigated in a small laboratory setting. This protocol describes an optimized, low-cost, small-footprint, high-throughput ISH procedure to detect gene expression patterns in 10-µm brain sections from zebra finches. It uses DIG-labeled riboprobes synthesized from cDNA templates available through the Songbird Neurogenomics Consortium. The method is compatible with high-resolution digital imaging; it produces images with low background and a resolution approaching that of immunohistochemical methods. Approximately 180 slides can be processed each week using this protocol, but it can be scaled to accommodate a broad range of tissues from which cryosections can be obtained.
Collapse
Affiliation(s)
- J. Carleton
- Department of Behavioral Neuroscience; Oregon Health & Science University; Portland, OR USA 97239
| | - P.V. Lovell
- Department of Behavioral Neuroscience; Oregon Health & Science University; Portland, OR USA 97239
| | - A. McHugh
- Department of Behavioral Neuroscience; Oregon Health & Science University; Portland, OR USA 97239
| | - T. Marzulla
- Department of Behavioral Neuroscience; Oregon Health & Science University; Portland, OR USA 97239
| | - K. Horback
- Department of Behavioral Neuroscience; Oregon Health & Science University; Portland, OR USA 97239
| | - C.V. Mello
- Department of Behavioral Neuroscience; Oregon Health & Science University; Portland, OR USA 97239
- CORRESPONDING AUTHOR: Claudio Mello; (503)-418-2650;
| |
Collapse
|
13
|
The opportunities and challenges of large-scale molecular approaches to songbird neurobiology. Neurosci Biobehav Rev 2014; 50:70-6. [PMID: 25280907 DOI: 10.1016/j.neubiorev.2014.09.017] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2014] [Revised: 09/08/2014] [Accepted: 09/22/2014] [Indexed: 01/31/2023]
Abstract
High-throughput methods for analyzing genome structure and function are having a large impact in songbird neurobiology. Methods include genome sequencing and annotation, comparative genomics, DNA microarrays and transcriptomics, and the development of a brain atlas of gene expression. Key emerging findings include the identification of complex transcriptional programs active during singing, the robust brain expression of non-coding RNAs, evidence of profound variations in gene expression across brain regions, and the identification of molecular specializations within song production and learning circuits. Current challenges include the statistical analysis of large datasets, effective genome curations, the efficient localization of gene expression changes to specific neuronal circuits and cells, and the dissection of behavioral and environmental factors that influence brain gene expression. The field requires efficient methods for comparisons with organisms like chicken, which offer important anatomical, functional and behavioral contrasts. As sequencing costs plummet, opportunities emerge for comparative approaches that may help reveal evolutionary transitions contributing to vocal learning, social behavior and other properties that make songbirds such compelling research subjects.
Collapse
|
14
|
Atoji Y, Karim MR. Homology of the mesopallium in the adult chicken identified by gene expression of the neocortical marker cholecystokinin. Neurosci Lett 2014; 562:85-9. [DOI: 10.1016/j.neulet.2014.01.011] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2013] [Revised: 01/06/2014] [Accepted: 01/08/2014] [Indexed: 01/17/2023]
|
15
|
London SE. Genome-brain-behavior interdependencies as a framework to understand hormone effects on learned behavior. Gen Comp Endocrinol 2013; 190:176-81. [PMID: 23684969 DOI: 10.1016/j.ygcen.2013.04.035] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/04/2012] [Revised: 04/28/2013] [Accepted: 04/30/2013] [Indexed: 12/16/2022]
Abstract
Hormones have profound effects on the maturation and function of the zebra finch song system. Hormones often signal through receptors that directly or indirectly regulate transcription. In this way, hormones and the genome are functionally connected. Genome-brain-behavior interdependencies are often studied on evolutionary timescales but we can now apply and test these relationships on short timescales, relevant to an individual. Here, we begin to place patterns of hormone-related gene expression into the timeframe of an individual's lifespan to consider how hormones contribute to organization of neural systems necessary for learned behavior, and how they might signal during experience in ways that affect future behavior. This framework illustrates both how much investigations into genome and hormone function are intertwined, and how much we still need to learn.
Collapse
Affiliation(s)
- Sarah E London
- Department of Psychology, Institute for Mind and Biology, Committee on Neurobiology, University of Chicago, 129A BPSB, 940 E 57th Street, Chicago, IL 60637, USA.
| |
Collapse
|
16
|
Abstract
Songbirds have unique value as a model for memory and learning. In their natural social life, they communicate through vocalizations that they must learn to produce and recognize. Song communication elicits abrupt changes in gene expression in regions of the forebrain responsible for song perception and production--what is the functional significance of this genomic response? For 20 years, the focus of research was on just a few genes [primarily ZENK, now known as egr1 (early gene response 1)]. Recently, however, DNA microarrays have been developed and applied to songbird behavioral research, and in 2010 the initial draft assembly of the zebra finch genome was published. Together, these new data reveal that the genomic involvement in song processing is far more complex than anticipated. The concepts of neurogenomic computation and biological embedding are introduced as frameworks for future research.
Collapse
Affiliation(s)
- David F Clayton
- Biological and Experimental Psychology Division, School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom;
| |
Collapse
|
17
|
Lovell PV, Carleton JB, Mello CV. Genomics analysis of potassium channel genes in songbirds reveals molecular specializations of brain circuits for the maintenance and production of learned vocalizations. BMC Genomics 2013; 14:470. [PMID: 23845108 PMCID: PMC3711925 DOI: 10.1186/1471-2164-14-470] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2012] [Accepted: 06/19/2013] [Indexed: 02/08/2023] Open
Abstract
Background A fundamental question in molecular neurobiology is how genes that determine basic neuronal properties shape the functional organization of brain circuits underlying complex learned behaviors. Given the growing availability of complete vertebrate genomes, comparative genomics represents a promising approach to address this question. Here we used genomics and molecular approaches to study how ion channel genes influence the properties of the brain circuitry that regulates birdsong, a learned vocal behavior with important similarities to human speech acquisition. We focused on potassium (K-)Channels, which are major determinants of neuronal cell excitability. Starting with the human gene set of K-Channels, we used cross-species mRNA/protein alignments, and syntenic analysis to define the full complement of orthologs, paralogs, allelic variants, as well as novel loci not previously predicted in the genome of zebra finch (Taeniopygia guttata). We also compared protein coding domains in chicken and zebra finch orthologs to identify genes under positive selective pressure, and those that contained lineage-specific insertions/deletions in functional domains. Finally, we conducted comprehensive in situ hybridizations to determine the extent of brain expression, and identify K-Channel gene enrichments in nuclei of the avian song system. Results We identified 107 K-Channel finch genes, including 6 novel genes common to non-mammalian vertebrate lineages. Twenty human genes are absent in songbirds, birds, or sauropsids, or unique to mammals, suggesting K-Channel properties may be lineage-specific. We also identified specific family members with insertions/deletions and/or high dN/dS ratios compared to chicken, a non-vocal learner. In situ hybridization revealed that while most K-Channel genes are broadly expressed in the brain, a subset is selectively expressed in song nuclei, representing molecular specializations of the vocal circuitry. Conclusions Together, these findings shed new light on genes that may regulate biophysical and excitable properties of the song circuitry, identify potential targets for the manipulation of the song system, and reveal genomic specializations that may relate to the emergence of vocal learning and associated brain areas in birds.
Collapse
|
18
|
Dunn IC, Meddle SL, Wilson PW, Wardle CA, Law AS, Bishop VR, Hindar C, Robertson GW, Burt DW, Ellison SJH, Morrice DM, Hocking PM. Decreased expression of the satiety signal receptor CCKAR is responsible for increased growth and body weight during the domestication of chickens. Am J Physiol Endocrinol Metab 2013; 304:E909-21. [PMID: 23443924 PMCID: PMC3651647 DOI: 10.1152/ajpendo.00580.2012] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/20/2012] [Accepted: 02/22/2013] [Indexed: 12/05/2022]
Abstract
Animal domestication has resulted in changes in growth and size. It has been suggested that this may have involved selection for differences in appetite. Divergent growth between chickens selected for egg laying or meat production is one such example. The neurons expressing AGRP and POMC in the basal hypothalamus are important components of appetite regulation, as are the satiety feedback pathways that carry information from the intestine, including CCK and its receptor CCKAR (CCK1 receptor). Using 16 generations of a cross between a fast and a relatively slow growing strain of chicken has identified a region on chromosome 4 downstream of the CCKAR gene, which is responsible for up to a 19% difference in body weight at 12 wk of age. Animals possessing the high-growth haplotype at the locus have lower expression of mRNA and immunoreactive CCKAR in the brain, intestine, and exocrine organs, which is correlated with increased levels of orexigenic AGRP in the hypothalamus. Animals with the high-growth haplotype are resistant to the anorectic effect of exogenously administered CCK, suggesting that their satiety set point has been altered. Comparison with traditional breeds shows that the high-growth haplotype has been present in the founders of modern meat-type strains and may have been selected early in domestication. This is the first dissection of the physiological consequences of a genetic locus for a quantitative trait that alters appetite and gives us an insight into the domestication of animals. This will allow elucidation of how differences in appetite occur in birds and also mammals.
Collapse
Affiliation(s)
- Ian C Dunn
- University of Edinburgh, Roslin Institute and Royal (Dick) School of Veterinary Studies, Easter Bush, United Kingdom
| | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|
19
|
Wood WE, Lovell PV, Mello CV, Perkel DJ. Serotonin, via HTR2 receptors, excites neurons in a cortical-like premotor nucleus necessary for song learning and production. J Neurosci 2011; 31:13808-15. [PMID: 21957243 PMCID: PMC3220194 DOI: 10.1523/jneurosci.2281-11.2011] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2011] [Revised: 07/06/2011] [Accepted: 08/05/2011] [Indexed: 11/21/2022] Open
Abstract
Serotonin (5-HT) is a neuromodulator that is important for neural development, learning and memory, mood, and perception. Dysfunction of the serotonin system is central to depression and other clinically important mood disorders and has been linked with learning deficits. In mammals, 5-HT release from the raphe nuclei in the brainstem can modulate the functional properties of cortical neurons, influencing sensory and motor processing. Birds also have serotonergic neurons in the dorsal raphe, suggesting that 5-HT plays similar roles in sensory and motor processing, perhaps modulating brain circuitry underlying birdsong. To investigate this possibility, we measured the effects of 5-HT on spontaneous firing of projection neurons in the premotor robust nucleus of the arcopallium in brain slices from male zebra finches. These neurons are thought be akin to cortical layer V pyramidal neurons. 5-HT dramatically and reversibly enhanced the endogenous firing of RA neurons. Using pharmacological agonists and antagonists in vitro, we determined this action is mediated via HTR2 receptors, which we verified are expressed by in situ hybridization. Finally, focal administration of the serotonin selective reuptake inhibitor fluvoxamine revealed that endogenous 5-HT is sufficient to mediate this effect in vivo. These findings reveal a modulatory action of serotonin on the physiology of the song system circuitry and suggest a novel role of serotonin in regulating song production and/or learning; further understanding of the role of 5-HT in this system may help illuminate the complex role of this neuromodulator in social interactions and motor plasticity in humans.
Collapse
Affiliation(s)
- William E Wood
- Graduate Program in Neurobiology and Behavior, Departments of Biology and Otolaryngology, University of Washington, Seattle, Washington 98195, USA.
| | | | | | | |
Collapse
|
20
|
Lovell PV, Olson CR, Mello CV. Singing under the influence: examining the effects of nutrition and addiction on a learned vocal behavior. Mol Neurobiol 2011; 44:175-84. [PMID: 21340665 DOI: 10.1007/s12035-011-8169-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2010] [Accepted: 02/03/2011] [Indexed: 02/04/2023]
Abstract
The songbird model is widely established in a number of laboratories for the investigation of the neurobiology and development of vocal learning. While vocal learning is rare in the animal kingdom, it is a trait that songbirds share with humans. The neuroanatomical and physiological organization of the brain circuitry that controls learned vocalizations has been extensively characterized, particularly in zebra finches (Taeniopygia guttata). Recently, several powerful molecular and genomic tools have become available in this organism, making it an attractive choice for neurobiologists interested in the neural and genetic basis of a complex learned behavior. Here, we briefly review some of the main features of vocal learning and associated brain structures in zebra finches and comment on some examples that illustrate how themes related to nutrition and addiction can be explored using this model organism.
Collapse
Affiliation(s)
- Peter V Lovell
- Department of Behavioral Neuroscience, Oregon Health and Science University, 3181 Sam Jackson Park Rd L470, Portland, OR 97239, USA
| | | | | |
Collapse
|
21
|
Kong L, Lovell PV, Heger A, Mello CV, Ponting CP. Accelerated evolution of PAK3- and PIM1-like kinase gene families in the zebra finch, Taeniopygia guttata. Mol Biol Evol 2010; 27:1923-34. [PMID: 20237222 DOI: 10.1093/molbev/msq080] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
Genes encoding protein kinases tend to evolve slowly over evolutionary time, and only rarely do they appear as recent duplications in sequenced vertebrate genomes. Consequently, it was a surprise to find two families of kinase genes that have greatly and recently expanded in the zebra finch (Taeniopygia guttata) lineage. In contrast to other amniotic genomes (including chicken) that harbor only single copies of p21-activated serine/threonine kinase 3 (PAK3) and proviral integration site 1 (PIM1) genes, the zebra finch genome appeared at first to additionally contain 67 PAK3-like (PAK3L) and 51 PIM1-like (PIM1L) protein kinase genes. An exhaustive analysis of these gene models, however, revealed most to be incomplete, owing to the absence of terminal exons. After reprediction, 31 PAK3L genes and 10 PIM1L genes remain, and all but three are predicted, from the retention of functional sites and open reading frames, to be enzymatically active. PAK3L, but not PIM1L, gene sequences show evidence of recurrent episodes of positive selection, concentrated within structures spatially adjacent to N- and C-terminal protein regions that have been discarded from zebra finch PAK3L genes. At least seven zebra finch PAK3L genes were observed to be expressed in testis, whereas two sequences were found transcribed in the brain, one broadly including the song nuclei and the other in the ventricular zone and in cells resembling Bergmann's glia in the cerebellar Purkinje cell layer. Two PIM1L sequences were also observed to be expressed with broad distributions in the zebra finch brain, one in both the ventricular zone and the cerebellum and apparently associated with glial cells and the other showing neuronal cell expression and marked enrichment in midbrain/thalamic nuclei. These expression patterns do not correlate with zebra finch-specific features such as vocal learning. Nevertheless, our results show how ancient and conserved intracellular signaling molecules can be co-opted, following duplication, thereby resulting in lineage-specific functions, presumably affecting the zebra finch testis and brain.
Collapse
Affiliation(s)
- Lesheng Kong
- Medical Research Council Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford, United Kingdom
| | | | | | | | | |
Collapse
|