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Angst G, Potapov A, Joly FX, Angst Š, Frouz J, Ganault P, Eisenhauer N. Conceptualizing soil fauna effects on labile and stabilized soil organic matter. Nat Commun 2024; 15:5005. [PMID: 38886372 PMCID: PMC11183196 DOI: 10.1038/s41467-024-49240-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Accepted: 05/28/2024] [Indexed: 06/20/2024] Open
Abstract
Fauna is highly abundant and diverse in soils worldwide, but surprisingly little is known about how it affects soil organic matter stabilization. Here, we review how the ecological strategies of a multitude of soil faunal taxa can affect the formation and persistence of labile (particulate organic matter, POM) and stabilized soil organic matter (mineral-associated organic matter, MAOM). We propose three major mechanisms - transformation, translocation, and grazing on microorganisms - by which soil fauna alters factors deemed essential in the formation of POM and MAOM, including the quantity and decomposability of organic matter, soil mineralogy, and the abundance, location, and composition of the microbial community. Determining the relevance of these mechanisms to POM and MAOM formation in cross-disciplinary studies that cover individual taxa and more complex faunal communities, and employ physical fractionation, isotopic, and microbiological approaches is essential to advance concepts, models, and policies focused on soil organic matter and effectively manage soils as carbon sinks, nutrient stores, and providers of food.
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Affiliation(s)
- Gerrit Angst
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103, Leipzig, Germany.
- Institute of Biology, Leipzig University, Leipzig, Germany.
- Biology Centre of the Czech Academy of Sciences, Institute of Soil Biology & Biogeochemistry, Na Sádkách 7, 37005, České Budějovice, Czech Republic.
- Institute for Environmental Studies, Charles University, Benátská 2, Praha 2, Prague, Czech Republic.
| | - Anton Potapov
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103, Leipzig, Germany
- Senckenberg Museum für Naturkunde Görlitz, Postfach 300 154, 02806, Görlitz, Germany
| | - François-Xavier Joly
- Eco&Sols, Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France
| | - Šárka Angst
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103, Leipzig, Germany
- Institute of Biology, Leipzig University, Leipzig, Germany
| | - Jan Frouz
- Biology Centre of the Czech Academy of Sciences, Institute of Soil Biology & Biogeochemistry, Na Sádkách 7, 37005, České Budějovice, Czech Republic
- Institute for Environmental Studies, Charles University, Benátská 2, Praha 2, Prague, Czech Republic
| | - Pierre Ganault
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103, Leipzig, Germany
- Institute of Biology, Leipzig University, Leipzig, Germany
- Laboratoire ECODIV USC INRAE 1499, Université de Rouen Normandie, FR CNRS 3730 SCALE, Rouen, France
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103, Leipzig, Germany
- Institute of Biology, Leipzig University, Leipzig, Germany
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2
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Ayayee PA, Petersen N, Riusch J, Rauter C, Larsen T. Enhanced gut microbiome supplementation of essential amino acids in Diploptera punctata fed low-protein plant-based diet. FRONTIERS IN INSECT SCIENCE 2024; 4:1396984. [PMID: 38711463 PMCID: PMC11073486 DOI: 10.3389/finsc.2024.1396984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Accepted: 04/09/2024] [Indexed: 05/08/2024]
Abstract
Introduction Building on our previous work, we investigate how dietary shifts affect gut microbial essential amino acid (EAA) provisioning in the lactating cockroach Diploptera punctata. Method To that end, we fed cockroaches three distinct diets: a plant-only Gari diet composed of starchy and granulated root tuber Yucca (Manihot esculenta), a dog food diet (DF), and a cellulose-amended dog food (CADF) diet. We anticipated that the high carbohydrate, low protein Gari would highlight increased microbial EAA supplementation to the host. Results By day 28, we observed distinct profiles of 14 bacterial families in the insect gut microbiomes of the three dietary groups. CADF-fed insects predominantly harbored cellulolytic and nitrogen-fixing bacteria families Streptococcaceae and Xanthomonadaceae. In contrast, Gari-fed insects were enriched in anaerobic lignocellulolytic bacteria families Paludibacteraceae and Dysgonomonadaceae, while DF-fed insects had a prevalence of proteolytic anaerobes Williamwhitmaniaceae and sulfate-reducing bacteria Desulfovibrionaceae. Furthermore, we confirmed significantly higher EAA supplementation in Gari-fed insects than in non-Gari-fed insects based on δ13C-EAA offsets between insect and their diets. The δ13C-EAA offsets between DF and CADF were nearly indistinguishable, highlighting the relevance of using the plant-based Gari in this experiment to unequivocally demonstrate this function in this insect. These results were underscored by lower standard metabolic rate (SMR) relative to the DF insect in Gari-fed (intermediate SMR and dietary quality) and CADF (least SMR and dietary quality) insects. Discussion The influence of diet on EAA provisioning and SMR responses in insects underscores the need for further exploration into the role of gut microbial functions in modulating metabolic responses.
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Affiliation(s)
- Paul A. Ayayee
- Department of Biology, University of Nebraska Omaha, Omaha, NE, United States
| | - Nick Petersen
- Department of Biology, University of Nebraska Omaha, Omaha, NE, United States
| | - Jennifer Riusch
- Department of Entomology, Insectary, BioSci Greenhouse, Ohio State University, Columbus, OH, United States
| | - Claudia Rauter
- Department of Biology, University of Nebraska Omaha, Omaha, NE, United States
| | - Thomas Larsen
- Department of Archeology, Max Planck Institute of Geoanthropology, Jena, Germany
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3
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Shi B, Meng J, Wang T, Li Q, Zhang Q, Su G. The main strategies for soil pollution apportionment: A review of the numerical methods. J Environ Sci (China) 2024; 136:95-109. [PMID: 37923480 DOI: 10.1016/j.jes.2022.09.027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2022] [Revised: 09/16/2022] [Accepted: 09/19/2022] [Indexed: 11/07/2023]
Abstract
Nowadays, a large number of compounds with different physical and chemical properties have been determined in soil. Environmental behaviors and source identification of pollutants in soil are the foundation of soil pollution control. Identification and quantitative analysis of potential pollution sources are the prerequisites for its prevention and control. Many efforts have made to develop methods for identifying the sources of soil pollutants. These efforts have involved the measurement of source and receptor parameters and the analysis of their relationships via numerical statistics methods. We have comprehensively reviewed the progress made in the development of source apportionment methodologies to date and present our synthesis. The numerical methods, such as spatial geostatistics analysis, receptor models, and machine learning methods are addressed in depth. In most cases, however, the effectiveness of any single approach for source apportionment remains limited. Combining multiple methods to address soil quality problems can reduce uncertainty about the sources of soil pollution. This review also constructively highlights the key strategies of combining mathematical models with the assessment of chemical profiles to provide more accurate source attribution. This review intends to provide a comprehensive summary of source apportionment methodologies to help promote further development.
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Affiliation(s)
- Bin Shi
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jing Meng
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Tieyu Wang
- Guangdong Provincial Key Laboratory of Marine Disaster Prediction and Prevention, Shantou University, Shantou 515063, China
| | - Qianqian Li
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Qifan Zhang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Guijin Su
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China.
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4
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Velazco VN, Saravia LA, Coviella CE, Falco LB. Trophic resources of the edaphic microarthropods: A worldwide review of the empirical evidence. Heliyon 2023; 9:e20439. [PMID: 37818009 PMCID: PMC10560771 DOI: 10.1016/j.heliyon.2023.e20439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Revised: 09/25/2023] [Accepted: 09/25/2023] [Indexed: 10/12/2023] Open
Abstract
Ecosystem sustainable use requires reliable information about its biotic and abiotic structure and functioning. Accurate knowledge of trophic relations is central for the understanding of ecosystem dynamics, which in turn, is essential for food web stability analyzes and the development of sustainable practices. There is a rapid growth in the knowledge on how belowground biodiversity regulates the structure and functioning of terrestrial ecosystems. Although, the available information about trophic relationships is hard to find and fragmented. Most of the information available worldwide about the food resources of soil microarthropods suggested that out of 3105 hits of initial research on this aspect only a total of 196 published works related particular species, genera, and families to particular trophic resources, the majority of them dealing with soils of the Palearctic region. From the 196 publications we extracted 3009 records relating specific taxonomic groups to their trophic resources, 20 percent mention saprophytic fungi as a food resource, 16 percent cite microfauna, 11 percent mention bacteria, 10 percent litter and 8 percent cite Springtails. The available information was highly skewed, the 73.71 percent comes from Acari, and within these, 50.62 percent correspond just to Sarcoptiformes. The literature on Collembola is very scarce and most of the information is on arthropleona. The review also highlights that available research on the use of trophic resources comes from European sites and the information on this aspect from other parts of the soils of the world is still at large but unknown.
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Affiliation(s)
- Víctor Nicolás Velazco
- Departamento de Ciencias Básicas, Universidad Nacional de Luján, Argentina
- Instituto de Ecología y Desarrollo Sustentable, UNLu – CONICET, Argentina
| | - Leonardo Ariel Saravia
- Centro Austral de Investigaciones Científicas, CADIC-CONICET, Ushuaia, Argentina
- Instituto de Ciencias Polares, Universidad Nacional de Tierra del Fuego, Argentina
| | - Carlos Eduardo Coviella
- Departamento de Ciencias Básicas, Universidad Nacional de Luján, Argentina
- Instituto de Ecología y Desarrollo Sustentable, UNLu – CONICET, Argentina
| | - Liliana Beatriz Falco
- Departamento de Ciencias Básicas, Universidad Nacional de Luján, Argentina
- Instituto de Ecología y Desarrollo Sustentable, UNLu – CONICET, Argentina
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5
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Manlick PJ, Cook JA, Newsome SD. The coupling of green and brown food webs regulates trophic position in a montane mammal guild. Ecology 2023; 104:e3949. [PMID: 36495220 DOI: 10.1002/ecy.3949] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Revised: 10/26/2022] [Accepted: 11/11/2022] [Indexed: 12/14/2022]
Abstract
Food web ecology has revolutionized our understanding of ecological processes, but the drivers of food web properties like trophic position (TP) and food chain length are notoriously enigmatic. In terrestrial ecosystems, above- and belowground systems were historically compartmentalized into "green" and "brown" food webs, but the coupling of these systems by animal consumers is increasingly recognized, with potential consequences for trophic structure. We used stable isotope analysis (δ13 C, δ15 N) of individual amino acids to trace the flow of essential biomolecules and jointly measure multichannel feeding, food web coupling, and TP in a guild of small mammals. We then tested the hypothesis that brown energy fluxes to aboveground consumers increase terrestrial food chain length via cryptic trophic transfers during microbial decomposition. We found that the average small mammal consumer acquired nearly 70% of their essential amino acids (69.0% ± 7.6%) from brown food webs, leading to significant increases in TP across species and functional groups. Fungi were the primary conduit of brown energy to aboveground consumers, providing nearly half the amino acid budget for small mammals on average (44.3% ± 12.0%). These findings illustrate the tightly coupled nature of green and brown food webs and show that microbially mediated energy flow ultimately regulates food web structure in aboveground consumers. Consequently, we propose that the integration of green and brown energy channels is a cryptic driver of food chain length in terrestrial ecosystems.
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Affiliation(s)
- Philip J Manlick
- Department of Biology, University of New Mexico, Albuquerque, New Mexico, USA.,Museum of Southwestern Biology, University of New Mexico, Albuquerque, New Mexico, USA.,Pacific Northwest Research Station, USDA Forest Service, Juneau, Alaska, USA
| | - Joseph A Cook
- Department of Biology, University of New Mexico, Albuquerque, New Mexico, USA.,Museum of Southwestern Biology, University of New Mexico, Albuquerque, New Mexico, USA
| | - Seth D Newsome
- Department of Biology, University of New Mexico, Albuquerque, New Mexico, USA
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6
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Garrison JA, Motwani NH, Broman E, Nascimento FJA. Molecular diet analysis enables detection of diatom and cyanobacteria DNA in the gut of Macoma balthica. PLoS One 2022; 17:e0278070. [PMID: 36417463 PMCID: PMC9683582 DOI: 10.1371/journal.pone.0278070] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Accepted: 11/08/2022] [Indexed: 11/25/2022] Open
Abstract
Detritivores are essential to nutrient cycling, but are often neglected in trophic networks, due to difficulties with determining their diet. DNA analysis of gut contents shows promise of trophic link discrimination, but many unknown factors limit its usefulness. For example, DNA can be rapidly broken down, especially by digestion processes, and DNA provides only a snapshot of the gut contents at a specific time. Few studies have been performed on the length of time that prey DNA can be detected in consumer guts, and none so far using benthic detritivores. Eutrophication, along with climate change, is altering the phytoplankton communities in aquatic ecosystems, on which benthic detritivores in aphotic soft sediments depend. Nutrient-poor cyanobacteria blooms are increasing in frequency, duration, and magnitude in many water bodies, while nutrient-rich diatom spring blooms are shrinking in duration and magnitude, creating potential changes in diet of benthic detritivores. We performed an experiment to identify the taxonomy and quantify the abundance of phytoplankton DNA fragments on bivalve gut contents, and how long these fragments can be detected after consumption in the Baltic Sea clam Macoma balthica. Two common species of phytoplankton (the cyanobacteria Nodularia spumigena or the diatom Skeletonema marinoi) were fed to M. balthica from two regions (from the northern and southern Stockholm archipelago). After removing the food source, M. balthica gut contents were sampled every 24 hours for seven days to determine the number of 23S rRNA phytoplankton DNA copies and when the phytoplankton DNA could no longer be detected by quantitative PCR. We found no differences in diatom 18S rRNA gene fragments of the clams by region, but the southern clams showed significantly more cyanobacteria 16S rRNA gene fragments in their guts than the northern clams. Interestingly, the cyanobacteria and diatom DNA fragments were still detectable by qPCR in the guts of M. balthica one week after removal from its food source. However, DNA metabarcoding of the 23S rRNA phytoplankton gene found in the clam guts showed that added food (i.e. N. spumigena and S. marinoi) did not make up a majority of the detected diet. Our results suggest that these detritivorous clams therefore do not react as quickly as previously thought to fresh organic matter inputs, with other phytoplankton than large diatoms and cyanobacteria constituting the majority of their diet. This experiment demonstrates the viability of using molecular methods to determine feeding of detritivores, but further studies investigating how prey DNA signals can change over time in benthic detritivores will be needed before this method can be widely applicable to both models of ecological functions and conservation policy.
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Affiliation(s)
- Julie A. Garrison
- Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden
- * E-mail:
| | - Nisha H. Motwani
- School of Natural Sciences, Technology and Environmental Studies, Södertörn University, Huddinge, Sweden
- Department of Environmental Science, Stockholm University, Stockholm, Sweden
| | - Elias Broman
- Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden
- Baltic Sea Centre, Stockholm University, Stockholm, Sweden
| | - Francisco J. A. Nascimento
- Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden
- Baltic Sea Centre, Stockholm University, Stockholm, Sweden
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7
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Komonen A, Torniainen J, Kiljunen M. Stable isotopes in monitoring terrestrial arthropods. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.969595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Monitoring of arthropods focuses typically on changes in population and range size over time. Yet, there are a myriad of other aspects that could and should be monitored under the ongoing global and local environmental change. Stable isotope analysis, widely employed in short-term ecological studies, has potential in long-term monitoring of arthropods. Here we discuss the use of stable isotopes in monitoring terrestrial arthropods, provide some empirical examples of the use of bulk tissue samples in stable isotope analysis, and outline future directions in using compound-specific stable isotope analysis in monitoring. We performed a literature search for 2012–2021 to see if stable isotopes have been specifically used in monitoring of terrestrial arthropods. The literature shows that stable isotopes have been successfully used to reveal ecological phenomena (dispersal, trophic interactions, resource use) that would have been difficult or impossible to detect by other means. Yet, stable isotopes have been underused in arthropod monitoring programs, but the growing number of basic studies on stable isotope ecology and methodology provides crucial basis needed for developing monitoring programs. Stable isotopes provide technically, economically and ecologically feasible addition to the traditional monitoring methods of terrestrial arthropods.
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8
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Hoenig BD, Trevelline BK, Latta SC, Porter BA. Integrating DNA-based Prey Occurrence Probability Into Stable Isotope Mixing Models. Integr Comp Biol 2022; 62:211-222. [PMID: 35679087 DOI: 10.1093/icb/icac086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 06/02/2022] [Accepted: 06/03/2022] [Indexed: 11/15/2022] Open
Abstract
The introduction of laboratory methods to animal dietary studies has allowed researchers to obtain results with accuracy and precision not possible with observational techniques. For example, DNA barcoding, or the identification of prey with taxon-specific DNA sequences, allows researchers to classify digested prey tissues to the species-level, while stable isotope analysis paired with Bayesian mixing models can quantify dietary contributions by comparing a consumer's isotopic values to those derived from their prey. However, DNA-based methods are currently only able to classify, but not quantify, the taxa present in a diet sample, while stable isotope analysis can only quantify dietary taxa that are identified a priori as prey isotopic values are a result of life history traits, not phylogenetic relatedness. Recently, researchers have begun to couple these techniques in dietary studies to capitalize on the reciprocal benefits and drawbacks offered by each approach, with some even integrating DNA-based results directly into Bayesian mixing models as informative priors. As the informative priors used in these models must represent known dietary compositions (e.g., percentages of prey biomasses), researchers have scaled the DNA-based frequency of occurrence of major prey groups so that their normalized frequency of occurrence sums to 100%. Unfortunately, such an approach is problematic as priors stemming from binomial, DNA-based data do not truly reflect quantitative information about the consumer's diet and may skew the posterior distribution of prey quantities as a result. Therefore, we present a novel approach to incorporate DNA-based dietary information into Bayesian stable isotope mixing models that preserves the binomial nature of DNA-based results. This approach uses community-wide frequency of occurrence or logistic regression-based estimates of prey occurrence to dictate the probability that each prey group is included in each mixing model iteration, and, in turn, the probability that each iteration's results are included in the posterior distribution of prey composition possibilities. Here, we demonstrate the utility of this method by using it to quantify the prey composition of nestling Louisiana waterthrush (Parkesia motacilla).
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Affiliation(s)
- Brandon D Hoenig
- Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA
| | - Brian K Trevelline
- The Cornell Laboratory of Ornithology, Cornell University, Ithaca, New York, USA.,Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, New York, USA
| | | | - Brady A Porter
- Department of Biological Sciences, Duquesne University, Pittsburgh, PA, USA
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9
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Yun HY, Larsen T, Choi B, Won E, Shin K. Amino acid nitrogen and carbon isotope data: Potential and implications for ecological studies. Ecol Evol 2022; 12:e8929. [PMID: 35784034 PMCID: PMC9163675 DOI: 10.1002/ece3.8929] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 04/18/2022] [Accepted: 04/25/2022] [Indexed: 12/17/2022] Open
Abstract
Explaining food web dynamics, stability, and functioning depend substantially on understanding of feeding relations within a community. Bulk stable isotope ratios (SIRs) in natural abundance are well‐established tools to express direct and indirect feeding relations as continuous variables across time and space. Along with bulk SIRs, the SIRs of individual amino acids (AAs) are now emerging as a promising and complementary method to characterize the flow and transformation of resources across a diversity of organisms, from microbial domains to macroscopic consumers. This significant AA‐SIR capacity is based on empirical evidence that a consumer's SIR, specific to an individual AA, reflects its diet SIR coupled with a certain degree of isotopic differences between the consumer and its diet. However, many empirical ecologists are still unfamiliar with the scope of applicability and the interpretative power of AA‐SIR. To fill these knowledge gaps, we here describe a comprehensive approach to both carbon and nitrogen AA‐SIR assessment focusing on two key topics: pattern in AA‐isotope composition across spatial and temporal scales, and a certain variability of AA‐specific isotope differences between the diet and the consumer. On this basis we review the versatile applicability of AA‐SIR to improve our understanding of physiological processes as well as food web functioning, allowing us to reconstruct dominant basal dietary sources and trace their trophic transfers at the specimen and community levels. Given the insightful and opportunities of AA‐SIR, we suggest future applications for the dual use of carbon and nitrogen AA‐SIR to study more realistic food web structures and robust consumer niches, which are often very difficult to explain in nature.
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Affiliation(s)
- Hee Young Yun
- Deparment of Marine Science and Convergent Technology Hanyang University Ansan Korea
| | - Thomas Larsen
- Department of Archaeology Max Planck Institute for the Science of Human History Jena Germany
| | - Bohyung Choi
- Deparment of Marine Science and Convergent Technology Hanyang University Ansan Korea
- Inland Fisheries Research Institute National Institute of Fisheries Science Geumsan‐gun Korea
| | - Eun‐Ji Won
- Deparment of Marine Science and Convergent Technology Hanyang University Ansan Korea
| | - Kyung‐Hoon Shin
- Deparment of Marine Science and Convergent Technology Hanyang University Ansan Korea
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10
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Manlick PJ, Newsome SD. Stable isotope fingerprinting traces essential amino acid assimilation and multichannel feeding in a vertebrate consumer. Methods Ecol Evol 2022. [DOI: 10.1111/2041-210x.13903] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Philip J. Manlick
- Department of Biology University of New Mexico Albuquerque New Mexico USA
| | - Seth D. Newsome
- Department of Biology University of New Mexico Albuquerque New Mexico USA
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11
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Potapov AM. Multifunctionality of belowground food webs: resource, size and spatial energy channels. Biol Rev Camb Philos Soc 2022; 97:1691-1711. [PMID: 35393748 DOI: 10.1111/brv.12857] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Revised: 03/25/2022] [Accepted: 03/28/2022] [Indexed: 01/17/2023]
Abstract
The belowground compartment of terrestrial ecosystems drives nutrient cycling, the decomposition and stabilisation of organic matter, and supports aboveground life. Belowground consumers create complex food webs that regulate functioning, ensure stability and support biodiversity both below and above ground. However, existing soil food-web reconstructions do not match recently accumulated empirical evidence and there is no comprehensive reproducible approach that accounts for the complex resource, size and spatial structure of food webs in soil. Here I build on generic food-web organisation principles and use multifunctional classification of soil protists, invertebrates and vertebrates, to reconstruct a 'multichannel' food web across size classes of soil-associated consumers. I infer weighted trophic interactions among trophic guilds using feeding preferences and prey protection traits (evolutionarily inherited traits), size and spatial distributions (niche overlaps), and biomass-dependent feeding. I then use food-web reconstruction, together with assimilation efficiencies, to calculate energy fluxes assuming a steady-state energetic system. Based on energy fluxes, I propose a number of indicators, related to stability, biodiversity and multiple ecosystem-level functions such as herbivory, top-down control, translocation and transformation of organic matter. I illustrate this approach with an empirical example, comparing it with traditional resource-focused soil food-web reconstruction. The multichannel reconstruction can be used to assess 'trophic multifunctionality' (analogous to ecosystem multifunctionality), i.e. simultaneous support of multiple trophic functions by the food web, and compare it across communities and ecosystems spanning beyond the soil. With further empirical validation of the proposed functional indicators, this multichannel reconstruction approach could provide an effective tool for understanding animal diversity-ecosystem functioning relationships in soil. This tool hopefully will inspire more researchers to describe soil communities and belowground-aboveground interactions comprehensively. Such studies will provide informative indicators for including consumers as active agents in biogeochemical models, not only locally but also on regional and global scales.
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Affiliation(s)
- Anton M Potapov
- Johann Friedrich Blumenbach Institute of Zoology and Anthropology, Animal Ecology, University of Göttingen, Untere Karspüle 2, 37073, Göttingen, Germany.,A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Leninsky Prospect 33, 119071, Moscow
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12
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Alp M, Cucherousset J. Food webs speak of human impact: Using stable isotope-based tools to measure ecological consequences of environmental change. FOOD WEBS 2022. [DOI: 10.1016/j.fooweb.2021.e00218] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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13
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Potapov AM, Beaulieu F, Birkhofer K, Bluhm SL, Degtyarev MI, Devetter M, Goncharov AA, Gongalsky KB, Klarner B, Korobushkin DI, Liebke DF, Maraun M, Mc Donnell RJ, Pollierer MM, Schaefer I, Shrubovych J, Semenyuk II, Sendra A, Tuma J, Tůmová M, Vassilieva AB, Chen T, Geisen S, Schmidt O, Tiunov AV, Scheu S. Feeding habits and multifunctional classification of soil‐associated consumers from protists to vertebrates. Biol Rev Camb Philos Soc 2022; 97:1057-1117. [DOI: 10.1111/brv.12832] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Revised: 12/31/2021] [Accepted: 01/05/2022] [Indexed: 12/17/2022]
Affiliation(s)
- Anton M. Potapov
- J.F. Blumenbach Institute of Zoology and Anthropology University of Göttingen Untere Karspüle 2 37073 Göttingen Germany
- A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences Leninsky Prospect 33 119071 Moscow Russia
| | - Frédéric Beaulieu
- Canadian National Collection of Insects, Arachnids and Nematodes, Agriculture and Agri‐Food Canada Ottawa ON K1A 0C6 Canada
| | - Klaus Birkhofer
- Department of Ecology Brandenburg University of Technology Karl‐Wachsmann‐Allee 6 03046 Cottbus Germany
| | - Sarah L. Bluhm
- J.F. Blumenbach Institute of Zoology and Anthropology University of Göttingen Untere Karspüle 2 37073 Göttingen Germany
| | - Maxim I. Degtyarev
- A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences Leninsky Prospect 33 119071 Moscow Russia
| | - Miloslav Devetter
- Biology Centre of the Czech Academy of Sciences, Institute of Soil Biology Na Sádkách 702/7 37005 České Budějovice Czech Republic
| | - Anton A. Goncharov
- A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences Leninsky Prospect 33 119071 Moscow Russia
| | - Konstantin B. Gongalsky
- A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences Leninsky Prospect 33 119071 Moscow Russia
| | - Bernhard Klarner
- J.F. Blumenbach Institute of Zoology and Anthropology University of Göttingen Untere Karspüle 2 37073 Göttingen Germany
| | - Daniil I. Korobushkin
- A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences Leninsky Prospect 33 119071 Moscow Russia
| | - Dana F. Liebke
- J.F. Blumenbach Institute of Zoology and Anthropology University of Göttingen Untere Karspüle 2 37073 Göttingen Germany
| | - Mark Maraun
- J.F. Blumenbach Institute of Zoology and Anthropology University of Göttingen Untere Karspüle 2 37073 Göttingen Germany
| | - Rory J. Mc Donnell
- Department of Crop and Soil Science Oregon State University Corvallis OR 97331 U.S.A
| | - Melanie M. Pollierer
- J.F. Blumenbach Institute of Zoology and Anthropology University of Göttingen Untere Karspüle 2 37073 Göttingen Germany
| | - Ina Schaefer
- J.F. Blumenbach Institute of Zoology and Anthropology University of Göttingen Untere Karspüle 2 37073 Göttingen Germany
| | - Julia Shrubovych
- Biology Centre of the Czech Academy of Sciences, Institute of Soil Biology Na Sádkách 702/7 37005 České Budějovice Czech Republic
- Institute of Systematics and Evolution of Animals PAS Slawkowska 17 Pl 31‐016 Krakow Poland
- State Museum Natural History of NAS of Ukraine Teatralna 18 79008 Lviv Ukraine
| | - Irina I. Semenyuk
- A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences Leninsky Prospect 33 119071 Moscow Russia
- Joint Russian‐Vietnamese Tropical Center №3 Street 3 Thang 2, Q10 Ho Chi Minh City Vietnam
| | - Alberto Sendra
- Colecciones Entomológicas Torres‐Sala, Servei de Patrimoni Històric, Ajuntament de València València Spain
- Departament de Didàctica de les Cièncias Experimentals i Socials, Facultat de Magisteri Universitat de València València Spain
| | - Jiri Tuma
- Biology Centre of the Czech Academy of Sciences, Institute of Soil Biology Na Sádkách 702/7 37005 České Budějovice Czech Republic
- Biology Centre CAS, Institute of Entomology Branisovska 1160/31 370 05 Ceske Budejovice Czech Republic
| | - Michala Tůmová
- Biology Centre of the Czech Academy of Sciences, Institute of Soil Biology Na Sádkách 702/7 37005 České Budějovice Czech Republic
| | - Anna B. Vassilieva
- A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences Leninsky Prospect 33 119071 Moscow Russia
| | - Ting‐Wen Chen
- Biology Centre of the Czech Academy of Sciences, Institute of Soil Biology Na Sádkách 702/7 37005 České Budějovice Czech Republic
| | - Stefan Geisen
- Department of Nematology Wageningen University & Research 6700ES Wageningen The Netherlands
| | - Olaf Schmidt
- UCD School of Agriculture and Food Science University College Dublin Belfield Dublin 4 Ireland
| | - Alexei V. Tiunov
- A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences Leninsky Prospect 33 119071 Moscow Russia
| | - Stefan Scheu
- J.F. Blumenbach Institute of Zoology and Anthropology University of Göttingen Untere Karspüle 2 37073 Göttingen Germany
- Centre of Biodiversity and Sustainable Land Use Büsgenweg 1 37077 Göttingen Germany
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Ramirez MD, Besser AC, Newsome SD, McMahon KW. Meta‐analysis of primary producer amino acid δ
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N values and their influence on trophic position estimation. Methods Ecol Evol 2021. [DOI: 10.1111/2041-210x.13678] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Matthew D. Ramirez
- Graduate School of Oceanography University of Rhode Island Narragansett RI USA
| | - Alexi C. Besser
- Department of Biology University of New Mexico Albuquerque NM USA
| | - Seth D. Newsome
- Department of Biology University of New Mexico Albuquerque NM USA
| | - Kelton W. McMahon
- Graduate School of Oceanography University of Rhode Island Narragansett RI USA
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15
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Kjeldgaard MK, Hewlett JA, Eubanks MD. Widespread variation in stable isotope trophic position estimates: patterns, causes, and potential consequences. ECOL MONOGR 2021. [DOI: 10.1002/ecm.1451] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
| | - Jeremy A. Hewlett
- Department of Entomology Texas A&M University College Station Texas 77843 USA
| | - Micky D. Eubanks
- Department of Entomology Texas A&M University College Station Texas 77843 USA
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16
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Pollierer MM, Scheu S. Stable isotopes of amino acids indicate that soil decomposer microarthropods predominantly feed on saprotrophic fungi. Ecosphere 2021. [DOI: 10.1002/ecs2.3425] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023] Open
Affiliation(s)
- Melanie M. Pollierer
- J.F. Blumenbach Institute of Zoology and Anthropology University of Göttingen Untere Karspüle 2 Göttingen37073Germany
| | - Stefan Scheu
- J.F. Blumenbach Institute of Zoology and Anthropology University of Göttingen Untere Karspüle 2 Göttingen37073Germany
- Centre of Biodiversity and Sustainable Land Use University of Göttingen Büsgenweg 1 Göttingen37077Germany
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Affiliation(s)
- Robert W. Buchkowski
- Department of Biology University of Western OntarioBiological and Geological Sciences Building London ON Canada
| | - Zoë Lindo
- Department of Biology University of Western OntarioBiological and Geological Sciences Building London ON Canada
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18
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Pollierer MM, Scheu S, Tiunov AV. Isotope analyses of amino acids in fungi and fungal feeding Diptera larvae allow differentiating ectomycorrhizal and saprotrophic fungi‐based food chains. Funct Ecol 2020. [DOI: 10.1111/1365-2435.13654] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Melanie M. Pollierer
- J.F. Blumenbach Institute of Zoology and Anthropology University of Göttingen Göttingen Germany
| | - Stefan Scheu
- J.F. Blumenbach Institute of Zoology and Anthropology University of Göttingen Göttingen Germany
- Centre of Biodiversity and Sustainable Land Use University of Göttingen Göttingen Germany
| | - Alexei V. Tiunov
- A.N. Severtsov Institute of Ecology and Evolution Russian Academy of Sciences Moscow Russia
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19
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Brückner A, Heethoff M. Fatty acid metabolism in an oribatid mite: de novo biosynthesis and the effect of starvation. EXPERIMENTAL & APPLIED ACAROLOGY 2020; 81:483-494. [PMID: 32748182 DOI: 10.1007/s10493-020-00529-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Accepted: 07/27/2020] [Indexed: 06/11/2023]
Abstract
The fatty acid (FA) composition of lipids in animals is influenced by factors such as species, life stage, availability and type of food, as well as the ability to synthesize certain FAs de novo. We investigated the effect of starvation on the neutral lipid (NLFA) and phospholipid (PLFA) fatty acid patterns of the oribatid mite Archegozetes longisetosus Aoki. Furthermore, we performed stable-isotope labeled precursors feeding experiments under axenic conditions to delineate de novo FA synthesis by profiling 13C and deuterium incorporation via single-ion monitoring. Starvation of mites resulted in a decline in the total amount of NLFAs and significantly changed the fatty acid patterns, indicating that NLFAs were metabolized selectively. Biochemical tracer experiments confirmed that oribatid mites, like other animals, can produce stearic (18:0) and oleic acid (18:1ω9) de novo. Mass spectrometric data also revealed that they appear to synthesize linoleic acid [18:2ω6,9 = (9Z,12Z)-octadeca-9,12-dienoic acid]-an ability restricted only to a few arthropod taxa, including astigmatid mites. The physiological and biosynthesis processes revealed here are crucial to understand the potential biomarker function of fatty acids-especially 18:2ω6,9-in oribatid mites and their applicability in soil animal food web studies.
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Affiliation(s)
- Adrian Brückner
- Division of Biology and Biological Engineering, California Institute of Technology, 1200 E California Boulevard, Pasadena, CA, 91125, USA.
| | - Michael Heethoff
- Ecological Networks, Technische Universität Darmstadt, Schnittspahnstraße 3, 64287, Darmstadt, Germany.
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Larsen T, Hansen T, Dierking J. Characterizing niche differentiation among marine consumers with amino acid δ 13C fingerprinting. Ecol Evol 2020; 10:7768-7782. [PMID: 32760563 PMCID: PMC7391304 DOI: 10.1002/ece3.6502] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Revised: 05/24/2020] [Accepted: 06/02/2020] [Indexed: 11/09/2022] Open
Abstract
Marine food webs are highly compartmentalized, and characterizing the trophic niches among consumers is important for predicting how impact from human activities affects the structuring and functioning of marine food webs. Biomarkers such as bulk stable isotopes have proven to be powerful tools to elucidate trophic niches, but they may lack in resolution, particularly when spatiotemporal variability in a system is high. To close this gap, we investigated whether carbon isotope (δ13C) patterns of essential amino acids (EAAs), also termed δ13CAA fingerprints, can characterize niche differentiation in a highly dynamic marine system. Specifically, we tested the ability of δ13CAA fingerprints to differentiate trophic niches among six functional groups and ten individual species in the Baltic Sea. We also tested whether fingerprints of the common zooplanktivorous fishes, herring and sprat, differ among four Baltic Sea regions with different biochemical conditions and phytoplankton assemblages. Additionally, we investigated how these results compared to bulk C and N isotope data for the same sample set. We found significantly different δ13CAA fingerprints among all six functional groups. Species differentiation was in comparison less distinct, due to partial convergence of the species' fingerprints within functional groups. Herring and sprat displayed region-specific δ13CAA fingerprints indicating that this approach could be used as a migratory marker. Niche metrics analyses showed that bulk isotope data had a lower power to differentiate between trophic niches than δ13CAA fingerprinting. We conclude that δ13CAA fingerprinting has a strong potential to advance our understanding of ecological niches, and trophic linkages from producers to higher trophic levels in dynamic marine systems. Given how management practices of marine resources and habitats are reshaping the structure and function of marine food webs, implementing new and powerful tracer methods are urgently needed to improve the knowledge base for policy makers.
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Affiliation(s)
- Thomas Larsen
- Max Planck Institute for the Science of Human HistoryJenaGermany
| | - Thomas Hansen
- GEOMAR Helmholtz Centre for Ocean Research KielKielGermany
| | - Jan Dierking
- GEOMAR Helmholtz Centre for Ocean Research KielKielGermany
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21
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Ayayee PA, Kinney G, Yarnes C, Larsen T, Custer GF, van Diepen LTA, Muñoz-Garcia A. Role of the gut microbiome in mediating standard metabolic rate after dietary shifts in the viviparous cockroach, Diploptera punctata. J Exp Biol 2020; 223:jeb218271. [PMID: 32393544 DOI: 10.1242/jeb.218271] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Accepted: 05/05/2020] [Indexed: 01/22/2023]
Abstract
Diet may be a significant determinant of insect gut microbiome composition. However, the extent to which dietary shifts shape both the composition and relevant functions of insect gut microbiomes, and ultimately impact host energy balance (i.e. metabolic phenotype), is not well understood. We investigated the impacts of diet switching on Diploptera punctata females maintained on a dog food (DF) diet relative to those fed a comparatively sub-optimal cellulose-amended dog food (CADF) diet for 4 weeks. After this period, dietary shift resulted in a significantly higher average mass-specific standard metabolic rate (SMR) in CADF-fed females compared with DF-fed females. We also uncovered significant 13C-enrichment in DF-fed insect samples relative to CADF-fed insect samples and lowered bacterial essential amino acid (EAA) provisioning in CADF-fed samples. Differences in SMR and EAA provisioning were not accompanied by significant differences in overall microbiome composition between the two groups. However, cellulolytic and nitrogen-fixing bacterial families dominant in wild omnivorous cockroaches and wood-feeding termites were significantly enriched in CADF-fed females than in DF-fed females, at the end of the study. We propose that these changes in microbiome composition after dietary shifts are associated with changes in EAA provisioning and possibly SMR. Further studies are needed to comprehensively understand the relative importance of gut microbial functions among the complexity of factors known to underscore SMR responses in insects under varying dietary conditions.
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Affiliation(s)
- Paul A Ayayee
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, WY 82071, USA
| | - George Kinney
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH 43210, USA
| | - Chris Yarnes
- Department of Plant Sciences, Stable Isotope Facility, University of California, Davis, Davis, CA 95616, USA
| | - Thomas Larsen
- Max Planck Institute for the Science of Human History, Kahlaische Strasse, 07745 Jena, Germany
| | - Gordon F Custer
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, WY 82071, USA
| | - Linda T A van Diepen
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, WY 82071, USA
| | - Agustí Muñoz-Garcia
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University at Mansfield, Mansfield, OH 43210, USA
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