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For: Xiao Y, Jannin P, D'Albis T, Guizard N, Haegelen C, Lalys F, Vérin M, Collins DL. Investigation of morphometric variability of subthalamic nucleus, red nucleus, and substantia nigra in advanced Parkinson's disease patients using automatic segmentation and PCA-based analysis. Hum Brain Mapp 2014;35:4330-44. [PMID: 24652699 DOI: 10.1002/hbm.22478] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2013] [Revised: 01/07/2014] [Accepted: 01/16/2014] [Indexed: 01/02/2023]  Open
Number Cited by Other Article(s)
1
Fu G, El Jurdi R, Chougar L, Dormont D, Valabregue R, Lehéricy S, Colliot O. Projected pooling loss for red nucleus segmentation with soft topology constraints. J Med Imaging (Bellingham) 2024;11:044002. [PMID: 38988992 PMCID: PMC11232703 DOI: 10.1117/1.jmi.11.4.044002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 05/28/2024] [Accepted: 06/11/2024] [Indexed: 07/12/2024]  Open
2
Casamitjana A, Iglesias JE. High-resolution atlasing and segmentation of the subcortex: Review and perspective on challenges and opportunities created by machine learning. Neuroimage 2022;263:119616. [PMID: 36084858 DOI: 10.1016/j.neuroimage.2022.119616] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 08/30/2022] [Accepted: 09/05/2022] [Indexed: 11/17/2022]  Open
3
Zhao W, Wang Y, Zhou F, Li G, Wang Z, Zhong H, Song Y, Gillen KM, Wang Y, Yang G, Li J. Automated Segmentation of Midbrain Structures in High-Resolution Susceptibility Maps Based on Convolutional Neural Network and Transfer Learning. Front Neurosci 2022;16:801618. [PMID: 35221900 PMCID: PMC8866960 DOI: 10.3389/fnins.2022.801618] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Accepted: 01/17/2022] [Indexed: 11/23/2022]  Open
4
Rodriguez-Rojas R, Pineda-Pardo JA, Mañez-Miro J, Sanchez-Turel A, Martinez-Fernandez R, Del Alamo M, DeLong M, Obeso JA. Functional Topography of the Human Subthalamic Nucleus: Relevance for Subthalamotomy in Parkinson's Disease. Mov Disord 2021;37:279-290. [PMID: 34859498 DOI: 10.1002/mds.28862] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Revised: 10/26/2021] [Accepted: 11/03/2021] [Indexed: 12/12/2022]  Open
5
Beliveau V, Nørgaard M, Birkl C, Seppi K, Scherfler C. Automated segmentation of deep brain nuclei using convolutional neural networks and susceptibility weighted imaging. Hum Brain Mapp 2021;42:4809-4822. [PMID: 34322940 PMCID: PMC8449109 DOI: 10.1002/hbm.25604] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Revised: 07/08/2021] [Accepted: 07/13/2021] [Indexed: 01/10/2023]  Open
6
Singh K, García-Gomar MG, Bianciardi M. Probabilistic Atlas of the Mesencephalic Reticular Formation, Isthmic Reticular Formation, Microcellular Tegmental Nucleus, Ventral Tegmental Area Nucleus Complex, and Caudal-Rostral Linear Raphe Nucleus Complex in Living Humans from 7 Tesla Magnetic Resonance Imaging. Brain Connect 2021;11:613-623. [PMID: 33926237 PMCID: PMC8817713 DOI: 10.1089/brain.2020.0975] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
7
Xiao Y, Fortin M, Ahn J, Rivaz H, Peters TM, Battié MC. Statistical morphological analysis reveals characteristic paraspinal muscle asymmetry in unilateral lumbar disc herniation. Sci Rep 2021;11:15576. [PMID: 34341427 PMCID: PMC8329062 DOI: 10.1038/s41598-021-95149-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Accepted: 07/21/2021] [Indexed: 12/19/2022]  Open
8
Xiao Y, Peters TM, Khan AR. Characterizing white matter alterations subject to clinical laterality in drug-naïve de novo Parkinson's disease. Hum Brain Mapp 2021;42:4465-4477. [PMID: 34106502 PMCID: PMC8410564 DOI: 10.1002/hbm.25558] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Revised: 05/18/2021] [Accepted: 06/01/2021] [Indexed: 01/18/2023]  Open
9
Malaga KA, Costello JT, Chou KL, Patil PG. Atlas-independent, N-of-1 tissue activation modeling to map optimal regions of subthalamic deep brain stimulation for Parkinson disease. NEUROIMAGE-CLINICAL 2020;29:102518. [PMID: 33333464 PMCID: PMC7736726 DOI: 10.1016/j.nicl.2020.102518] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Revised: 11/25/2020] [Accepted: 11/27/2020] [Indexed: 01/13/2023]
10
Isaacs BR, Keuken MC, Alkemade A, Temel Y, Bazin PL, Forstmann BU. Methodological Considerations for Neuroimaging in Deep Brain Stimulation of the Subthalamic Nucleus in Parkinson's Disease Patients. J Clin Med 2020;9:E3124. [PMID: 32992558 PMCID: PMC7600568 DOI: 10.3390/jcm9103124] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Revised: 09/17/2020] [Accepted: 09/25/2020] [Indexed: 12/17/2022]  Open
11
Xiao Y, Lau JC, Hemachandra D, Gilmore G, Khan AR, Peters TM. Image Guidance in Deep Brain Stimulation Surgery to Treat Parkinson's Disease: A Comprehensive Review. IEEE Trans Biomed Eng 2020;68:1024-1033. [PMID: 32746050 DOI: 10.1109/tbme.2020.3006765] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
12
Lau JC, Xiao Y, Haast RAM, Gilmore G, Uludağ K, MacDougall KW, Menon RS, Parrent AG, Peters TM, Khan AR. Direct visualization and characterization of the human zona incerta and surrounding structures. Hum Brain Mapp 2020;41:4500-4517. [PMID: 32677751 PMCID: PMC7555067 DOI: 10.1002/hbm.25137] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2020] [Revised: 05/31/2020] [Accepted: 07/02/2020] [Indexed: 12/11/2022]  Open
13
Bolier E, Bot M, van den Munckhof P, Pal G, Sani S, Stebbins GT, Verhagen Metman L. Kinesthetic Cells within the Subthalamic Nucleus and Deep Brain Stimulation for Parkinson Disease. World Neurosurg 2020;139:e784-e791. [PMID: 32371080 DOI: 10.1016/j.wneu.2020.04.160] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Revised: 04/20/2020] [Accepted: 04/21/2020] [Indexed: 10/24/2022]
14
Manjón JV, Bertó A, Romero JE, Lanuza E, Vivo-Hernando R, Aparici-Robles F, Coupe P. pBrain: A novel pipeline for Parkinson related brain structure segmentation. NEUROIMAGE-CLINICAL 2020;25:102184. [PMID: 31982678 PMCID: PMC6992999 DOI: 10.1016/j.nicl.2020.102184] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Revised: 12/16/2019] [Accepted: 01/14/2020] [Indexed: 11/23/2022]
15
Kherif F, Latypova A. Principal component analysis. Mach Learn 2020. [DOI: 10.1016/b978-0-12-815739-8.00012-2] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
16
Park SC, Cha JH, Lee S, Jang W, Lee CS, Lee JK. Deep Learning-Based Deep Brain Stimulation Targeting and Clinical Applications. Front Neurosci 2019;13:1128. [PMID: 31708729 PMCID: PMC6821714 DOI: 10.3389/fnins.2019.01128] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2019] [Accepted: 10/04/2019] [Indexed: 12/26/2022]  Open
17
Xiao Y, Lau JC, Anderson T, DeKraker J, Collins DL, Peters T, Khan AR. An accurate registration of the BigBrain dataset with the MNI PD25 and ICBM152 atlases. Sci Data 2019;6:210. [PMID: 31624250 PMCID: PMC6797784 DOI: 10.1038/s41597-019-0217-0] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Accepted: 09/04/2019] [Indexed: 01/05/2023]  Open
18
Lemaire JJ, De Salles A, Coll G, El Ouadih Y, Chaix R, Coste J, Durif F, Makris N, Kikinis R. MRI Atlas of the Human Deep Brain. Front Neurol 2019;10:851. [PMID: 31507507 PMCID: PMC6718608 DOI: 10.3389/fneur.2019.00851] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Accepted: 07/23/2019] [Indexed: 12/15/2022]  Open
19
Isaacs BR, Trutti AC, Pelzer E, Tittgemeyer M, Temel Y, Forstmann BU, Keuken MC. Cortico-basal white matter alterations occurring in Parkinson's disease. PLoS One 2019;14:e0214343. [PMID: 31425517 PMCID: PMC6699705 DOI: 10.1371/journal.pone.0214343] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 07/17/2019] [Indexed: 01/01/2023]  Open
20
Ariz M, Abad RC, Castellanos G, Martinez M, Munoz-Barrutia A, Fernandez-Seara MA, Pastor P, Pastor MA, Ortiz-de-Solorzano C. Dynamic Atlas-Based Segmentation and Quantification of Neuromelanin-Rich Brainstem Structures in Parkinson Disease. IEEE TRANSACTIONS ON MEDICAL IMAGING 2019;38:813-823. [PMID: 30281440 DOI: 10.1109/tmi.2018.2872852] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
21
Kim J, Duchin Y, Shamir RR, Patriat R, Vitek J, Harel N, Sapiro G. Automatic localization of the subthalamic nucleus on patient-specific clinical MRI by incorporating 7 T MRI and machine learning: Application in deep brain stimulation. Hum Brain Mapp 2019;40:679-698. [PMID: 30379376 PMCID: PMC6519731 DOI: 10.1002/hbm.24404] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Revised: 09/04/2018] [Accepted: 09/07/2018] [Indexed: 12/20/2022]  Open
22
Tullo S, Devenyi GA, Patel R, Park MTM, Collins DL, Chakravarty MM. Warping an atlas derived from serial histology to 5 high-resolution MRIs. Sci Data 2018;5:180107. [PMID: 29917012 PMCID: PMC6007088 DOI: 10.1038/sdata.2018.107] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Accepted: 04/06/2018] [Indexed: 11/09/2022]  Open
23
Guo T, Song Y, Li J, Fan M, Yan X, He A, Huang D, Shen C, Zhang G, Yang G. Seed point discontinuity-based segmentation method for the substantia nigra and the red nucleus in quantitative susceptibility maps. J Magn Reson Imaging 2018;48:1112-1119. [PMID: 29603826 DOI: 10.1002/jmri.26023] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2017] [Accepted: 03/09/2018] [Indexed: 11/11/2022]  Open
24
Milchenko M, Norris SA, Poston K, Campbell MC, Ushe M, Perlmutter JS, Snyder AZ. 7T MRI subthalamic nucleus atlas for use with 3T MRI. J Med Imaging (Bellingham) 2018;5:015002. [PMID: 29340288 DOI: 10.1117/1.jmi.5.1.015002] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Accepted: 12/12/2017] [Indexed: 12/13/2022]  Open
25
Bianciardi M, Strong C, Toschi N, Edlow BL, Fischl B, Brown EN, Rosen BR, Wald LL. A probabilistic template of human mesopontine tegmental nuclei from in vivo 7T MRI. Neuroimage 2017;170:222-230. [PMID: 28476663 DOI: 10.1016/j.neuroimage.2017.04.070] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2017] [Revised: 04/07/2017] [Accepted: 04/29/2017] [Indexed: 10/19/2022]  Open
26
Fu KA, Nathan R, Dinov ID, Li J, Toga AW. T2-Imaging Changes in the Nigrosome-1 Relate to Clinical Measures of Parkinson's Disease. Front Neurol 2016;7:174. [PMID: 27812347 PMCID: PMC5071353 DOI: 10.3389/fneur.2016.00174] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2016] [Accepted: 09/27/2016] [Indexed: 01/23/2023]  Open
27
Zwirner J, Möbius D, Bechmann I, Arendt T, Hoffmann KT, Jäger C, Lobsien D, Möbius R, Planitzer U, Winkler D, Morawski M, Hammer N. Subthalamic nucleus volumes are highly consistent but decrease age-dependently-a combined magnetic resonance imaging and stereology approach in humans. Hum Brain Mapp 2016;38:909-922. [PMID: 27726278 DOI: 10.1002/hbm.23427] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2015] [Revised: 09/08/2016] [Accepted: 09/26/2016] [Indexed: 01/03/2023]  Open
28
Visser E, Keuken MC, Forstmann BU, Jenkinson M. Automated segmentation of the substantia nigra, subthalamic nucleus and red nucleus in 7T data at young and old age. Neuroimage 2016;139:324-336. [PMID: 27349329 PMCID: PMC4988791 DOI: 10.1016/j.neuroimage.2016.06.039] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2016] [Revised: 05/28/2016] [Accepted: 06/20/2016] [Indexed: 12/29/2022]  Open
29
Bianciardi M, Toschi N, Edlow BL, Eichner C, Setsompop K, Polimeni JR, Brown EN, Kinney HC, Rosen BR, Wald LL. Toward an In Vivo Neuroimaging Template of Human Brainstem Nuclei of the Ascending Arousal, Autonomic, and Motor Systems. Brain Connect 2015;5:597-607. [PMID: 26066023 PMCID: PMC4684653 DOI: 10.1089/brain.2015.0347] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
30
Li B, Jiang C, Li L, Zhang J, Meng D. Automated Segmentation and Reconstruction of the Subthalamic Nucleus in Parkinson's Disease Patients. Neuromodulation 2015;19:13-9. [DOI: 10.1111/ner.12350] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2015] [Revised: 07/23/2015] [Accepted: 08/17/2015] [Indexed: 12/01/2022]
31
Iglesias JE, Sabuncu MR. Multi-atlas segmentation of biomedical images: A survey. Med Image Anal 2015;24:205-219. [PMID: 26201875 PMCID: PMC4532640 DOI: 10.1016/j.media.2015.06.012] [Citation(s) in RCA: 358] [Impact Index Per Article: 39.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2014] [Revised: 06/12/2015] [Accepted: 06/15/2015] [Indexed: 10/23/2022]
32
Patch-based label fusion segmentation of brainstem structures with dual-contrast MRI for Parkinson's disease. Int J Comput Assist Radiol Surg 2014;10:1029-41. [PMID: 25249471 DOI: 10.1007/s11548-014-1119-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2014] [Accepted: 09/10/2014] [Indexed: 12/11/2022]
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