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Manne S, Sharma A, Sazonovas A, El-Faham A, de la Torre BG, Albericio F. Understanding OxymaPure as a Peptide Coupling Additive: A Guide to New Oxyma Derivatives. ACS OMEGA 2022; 7:6007-6023. [PMID: 35224362 PMCID: PMC8867806 DOI: 10.1021/acsomega.1c06342] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Accepted: 01/27/2022] [Indexed: 06/14/2023]
Abstract
An in silico study, using the GALAS algorithm available in ACD/PhysChem Suite, was performed to calculate the pK a(s) of various oximes with potential application as peptide coupling additives. Among the known oximes and predicted structures, OxymaPure is superior based on the pK a values calculated, confirming the results described in the literature and validating this algorithm for further use in that field. Among the nondescribed oximes, based on pK a calculation, ethyl 2-(hydroxyimino)-2-nitroacetate seems to be a potential candidate to be used as an additive during peptide coupling.
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Affiliation(s)
- Srinivasa
Rao Manne
- Peptide
Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal, Westville, Durban 4000, South Africa
| | - Anamika Sharma
- Peptide
Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal, Westville, Durban 4000, South Africa
- KwaZulu-Natal
Research Innovation and Sequencing Platform (KRISP), School of Laboratory
Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban 4041, South
Africa
- Department
of Chemistry, Prayoga Institute of Education
Research (PIER), Bangalore 560082, India
| | - Andrius Sazonovas
- Advanced
Chemistry Development, Inc. (ACD/Labs), 8 King Street East, Suite 107, Toronto, Ontario M5C 1B5, Canada
| | - Ayman El-Faham
- Department
of Chemistry, Faculty of Science, Alexandria
University, P.O. Box 426,
Ibrahimia, Alexandria 21321, Egypt
| | - Beatriz G. de la Torre
- Peptide
Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal, Westville, Durban 4000, South Africa
- KwaZulu-Natal
Research Innovation and Sequencing Platform (KRISP), School of Laboratory
Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban 4041, South
Africa
| | - Fernando Albericio
- Peptide
Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal, Westville, Durban 4000, South Africa
- Institute
for Advanced Chemistry of Catalonia (IQAC-CSIC), Jordi Girona 18-26, 08034 Barcelona, Spain
- CIBER-BBN,
Networking Centre on Bioengineering, Biomaterials and Nanomedicine,
and Department of Organic Chemistry, University
of Barcelona, Martí
i Franqués 1-11, 08028 Barcelona, Spain
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2
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Affiliation(s)
- Mina C. Nakhla
- Department of Chemistry and
Biochemistry, Baylor University, One Bear Place 97348, Waco, Texas 76798, United States
| | - John L. Wood
- Department of Chemistry and
Biochemistry, Baylor University, One Bear Place 97348, Waco, Texas 76798, United States
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3
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Chen CH, Liu QQ, Ma XP, Feng Y, Liang C, Pan CX, Su GF, Mo DL. Copper-Catalyzed Selective N-Vinylation of 3-(Hydroxyimino)indolin-2-ones with Alkenyl Boronic Acids: Synthesis of N-Vinyl Nitrones and Spirooxindoles. J Org Chem 2017; 82:6417-6425. [PMID: 28525706 DOI: 10.1021/acs.joc.7b00620] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
A copper-catalyzed selective cross-coupling reaction of 3-(hydroxyimino)indolin-2-ones with alkenyl boronic acids to access (E)-N-vinyl oxindole nitrones has been achieved under mild conditions. The studies showed that catalytic copper salt selectively gave mono N-vinylation products, while 2.0 equiv of copper salt provided double N-vinylation products. The control experiments revealed that the carbonyl group in 3-(hydroxyimino)indolin-2-one played important roles on N-vinylation. Furthermore, the prepared N-vinyl oxindole nitrones could be converted to spirooxindoles in good yields under thermal conditions.
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Affiliation(s)
- Chun-Hua Chen
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, Ministry of Science and Technology of China; School of Chemistry & Pharmaceutical Sciences, Guangxi Normal University , 15 Yu Cai Road, Guilin 541004, China
| | - Qing-Qing Liu
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, Ministry of Science and Technology of China; School of Chemistry & Pharmaceutical Sciences, Guangxi Normal University , 15 Yu Cai Road, Guilin 541004, China
| | - Xiao-Pan Ma
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, Ministry of Science and Technology of China; School of Chemistry & Pharmaceutical Sciences, Guangxi Normal University , 15 Yu Cai Road, Guilin 541004, China
| | - Yu Feng
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, Ministry of Science and Technology of China; School of Chemistry & Pharmaceutical Sciences, Guangxi Normal University , 15 Yu Cai Road, Guilin 541004, China
| | - Cui Liang
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, Ministry of Science and Technology of China; School of Chemistry & Pharmaceutical Sciences, Guangxi Normal University , 15 Yu Cai Road, Guilin 541004, China
| | - Cheng-Xue Pan
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, Ministry of Science and Technology of China; School of Chemistry & Pharmaceutical Sciences, Guangxi Normal University , 15 Yu Cai Road, Guilin 541004, China
| | - Gui-Fa Su
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, Ministry of Science and Technology of China; School of Chemistry & Pharmaceutical Sciences, Guangxi Normal University , 15 Yu Cai Road, Guilin 541004, China
| | - Dong-Liang Mo
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, Ministry of Science and Technology of China; School of Chemistry & Pharmaceutical Sciences, Guangxi Normal University , 15 Yu Cai Road, Guilin 541004, China
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4
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Wu SY, Ma XP, Liang C, Mo DL. Synthesis of N-Aryl Oxindole Nitrones through a Metal-Free Selective N-Arylation Process. J Org Chem 2017; 82:3232-3238. [DOI: 10.1021/acs.joc.6b02774] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Si-Yi Wu
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, Ministry of Science and Technology of China, School of Chemistry & Pharmaceutical Sciences, Guangxi Normal University, 15 Yu Cai Road, Guilin 541004, China
| | - Xiao-Pan Ma
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, Ministry of Science and Technology of China, School of Chemistry & Pharmaceutical Sciences, Guangxi Normal University, 15 Yu Cai Road, Guilin 541004, China
| | - Cui Liang
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, Ministry of Science and Technology of China, School of Chemistry & Pharmaceutical Sciences, Guangxi Normal University, 15 Yu Cai Road, Guilin 541004, China
| | - Dong-Liang Mo
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, Ministry of Science and Technology of China, School of Chemistry & Pharmaceutical Sciences, Guangxi Normal University, 15 Yu Cai Road, Guilin 541004, China
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5
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Wei WT, Zhu WM, Ying WW, Wu Y, Huang YL, Liang H. Metal-free synthesis of isatin oximes via radical coupling reactions of oxindoles with t-BuONO in water. Org Biomol Chem 2017; 15:5254-5257. [DOI: 10.1039/c7ob01235g] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
A metal-free method for the synthesis of isatin oximes was developed through the radical coupling reactions of oxindoles with t-BuONO.
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Affiliation(s)
- Wen-Ting Wei
- School of Materials Science and Chemical Engineering
- Ningbo University
- Ningbo 315211
- China
| | - Wen-Ming Zhu
- School of Materials Science and Chemical Engineering
- Ningbo University
- Ningbo 315211
- China
| | - Wei-Wei Ying
- School of Materials Science and Chemical Engineering
- Ningbo University
- Ningbo 315211
- China
| | - Yi Wu
- School of Materials Science and Chemical Engineering
- Ningbo University
- Ningbo 315211
- China
| | - Yi-Ling Huang
- School of Materials Science and Chemical Engineering
- Ningbo University
- Ningbo 315211
- China
| | - Hongze Liang
- School of Materials Science and Chemical Engineering
- Ningbo University
- Ningbo 315211
- China
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6
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Koch R, Wollweber HJ, Wentrup C. Oximes in the Isoxazolone, Pyrazolone, and 1,2,3-Triazolone Series: Experimental and Computational Investigation of Energies and Structures of E/Z Isomers of α-Oxo-Oximes in the Gas Phase and in Solution. Aust J Chem 2015. [DOI: 10.1071/ch15095] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The structures of a series of heterocyclic α-oxo-oximes, viz. 4-oximinoisoxazolone-5(4H)-ones 1 and 2,4-oximino-5(4H)-pyrazolones 3–5, and 4-oximino-1-phenyl-1,2,3-triazol-5(4H)-one 6, were investigated experimentally and computationally. Whereas the intramolecularly H-bonded ZZ isomers of these oximes are usually the most stable in the gas phase, this preference is overcome by intermolecular H-bonding to a solvent or another molecule. For 1,3-dimethyl-4-oximino-5(4H)-pyrazolone 3b a turnaround is seen when going from the solid (predominantly Z isomer) to DMSO solution (predominantly E isomer), which can be ascribed to an intermolecular H-bond between the oxime OH function and a DMSO molecule. Such isomerization is not seen in CDCl3, where intermolecular H-bonding is unimportant. The Z/E-isomerization in DMSO solution is accelerated by photolysis. Calculations of the energies of different conformers, and of 13C NMR data at the GIAO-ωb97xD/6-31G(d)//M06-2X/6-311++G(d,p) level permit a clear-cut correlation of conformer structures with observed 13C NMR spectra.
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7
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Li W, Duan Z, Zhang X, Zhang H, Wang M, Jiang R, Zeng H, Liu C, Lei A. From Anilines to Isatins: Oxidative Palladium-Catalyzed Double Carbonylation of CH Bonds. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201410321] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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8
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Li W, Duan Z, Zhang X, Zhang H, Wang M, Jiang R, Zeng H, Liu C, Lei A. From Anilines to Isatins: Oxidative Palladium-Catalyzed Double Carbonylation of CH Bonds. Angew Chem Int Ed Engl 2014; 54:1893-6. [DOI: 10.1002/anie.201410321] [Citation(s) in RCA: 96] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2014] [Revised: 11/26/2014] [Indexed: 12/17/2022]
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9
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He HX, Du DM. Highly enantioselective Mannich reactions of imines with tert-butyl acetoacetate catalyzed by squaramide organocatalyst. ACTA ACUST UNITED AC 2014. [DOI: 10.1016/j.tetasy.2014.03.010] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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10
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Chavannavar AP, Oliver AG, Ashfeld BL. An umpolung approach toward N-aryl nitrone construction: a phosphine-mediated addition of 1,2-dicarbonyls to nitroso electrophiles. Chem Commun (Camb) 2014; 50:10853-6. [DOI: 10.1039/c4cc05044d] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
An umpolung strategy toward the chemoselective construction ofN-aryl nitrones employing a phosphine-mediated addition of 1,2-dicarbonyls to nitroso arenes is described.
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Affiliation(s)
| | - Allen G. Oliver
- Department of Chemistry and Biochemistry
- University of Notre Dame
- Notre Dame, USA
| | - Brandon L. Ashfeld
- Department of Chemistry and Biochemistry
- University of Notre Dame
- Notre Dame, USA
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11
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Park KY, Kim BT, Heo JN. Direct One-Pot Synthesis of Naphthoxindoles from 4-Bromooxindoles by Suzuki-Miyaura Coupling and Aldol Condensation Reactions. European J Org Chem 2013. [DOI: 10.1002/ejoc.201301242] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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12
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Soltani Rad MN, Khalafi-Nezhad A, Babamohammadi S, Behrouz S. Microwave-Assisted Three-Component Synthesis of Some Novel 1-Alkyl-1H-indole-2,3-dione 3-(O-Alkyloxime) Derivatives as Potential Chemotherapeutic Agents. Helv Chim Acta 2010. [DOI: 10.1002/hlca.201000104] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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13
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Liu X, Huang XS, Sin N, Venables BL, Roongta V. 15N chemical shifts of a series of isatin oxime ethers and their corresponding nitrone isomers. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2010; 48:873-876. [PMID: 20818803 DOI: 10.1002/mrc.2680] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
In this article, we describe the characteristic (15)N chemical shifts of isatin oxime ethers and their isomer nitrone. These oxime ethers and nitrones are the alkylation reaction products of isatin oximes. In our study, the (15)N chemical shifts observed in these oxime ethers were in the 402-408 (or 22-28) ppm range, although those for their corresponding nitrone series were in the 280-320 (or -100 to -60) ppm range. This remarkable difference in (15)N NMR chemical shift values could potentially be used to determine the O- versus N-alkylation of oximes, even when only one isomer is available. In this paper, the differences in (15)N NMR chemical shifts serve as the basis for a discussion about how to distinguish both regioisomers derived from the oximes alkylation.
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Affiliation(s)
- Xiaohong Liu
- Department of Drug Metabolism, Covance Company, 3301 Kinsman Boulevard, Madison, WI 53704, USA
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14
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Sin N, Venables BL, Combrink KD, Gulgeze HB, Yu KL, Civiello RL, Thuring J, Wang XA, Yang Z, Zadjura L, Marino A, Kadow KF, Cianci CW, Clarke J, Genovesi EV, Medina I, Lamb L, Krystal M, Meanwell NA. Respiratory syncytial virus fusion inhibitors. Part 7: structure-activity relationships associated with a series of isatin oximes that demonstrate antiviral activity in vivo. Bioorg Med Chem Lett 2009; 19:4857-62. [PMID: 19596574 DOI: 10.1016/j.bmcl.2009.06.030] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2009] [Revised: 06/02/2009] [Accepted: 06/03/2009] [Indexed: 11/18/2022]
Abstract
A series of bezimidazole-isatin oximes were prepared and profiled as inhibitors of respiratory syncytial virus (RSV) replication in cell culture. Structure-activity relationship studies were directed toward optimization of antiviral activity, cell permeability and metabolic stability in human liver micorosomes (HLM). Parallel combinatorial synthetic chemistry was employed to functionalize isatin oximes via O-alkylation which quickly identified a subset of small, lipophilic substituents that established good potency for the series. Further optimization of the isatin oxime derivatives focused on introduction of nitrogen atoms to the isatin phenyl ring to provide a series of aza-isatin oximes with significantly improved PK properties. Several aza-isatin oximes analogs displayed targeted metabolic stability in HLM and permeability across a confluent monolayer of CaCo-2 cells. These studies identified several compounds, including 18i, 18j and 18n that demonstrated antiviral activity in the BALB/c mouse model of RSV infection following oral dosing.
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Affiliation(s)
- Ny Sin
- Department of Chemistry, Bristol-Myers Squibb Research and Development, Wallingford, CT 06492, United States.
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