BIRD (blackbody infrared radiative dissociation): evolution, principles, and applications

Computed Vibrational Heat Capacities for Gas-Phase Biomolecular Ions

Collision induced dissociation (CID) and collision induced unfolding (CIU) experiments are important tools for determining the structures of and differences between biomolecular complexes with mass spectrometry. However, quantitative comparison of CID/CIU data acquired on different platforms or even using different regions of the same instrument can be very challenging due to differences in gas identity and pressure, electric fields, and other experimental parameters. In principle, these can be reconciled by a detailed understanding of how ions heat, cool, and dissociate or unfold in time as a function of these parameters. Fundamental information needed to model these processes for different ion types and masses is their heat capacity as a function of the internal (i.e., vibrational) temperature. Here, we use quantum computational theory to predict average heat capacities as a function of temperature for a variety of model biomolecule types from 100 to 3000 K. On a degree-of-freedom basis, these values are remarkably invariant within each biomolecule type and can be used to estimate heat capacities of much larger biomolecular ions. We also explore effects of ion heating, cooling, and internal energy distribution as a function of time using a home-built program (IonSPA). We observe that these internal energy distributions can be nearly Boltzmann for larger ions (greater than a few kDa) through most of the CID/CIU kinetic window after a brief (few-μs) induction period. These results should be useful in reconciling CID/CIU results across different instrument platforms and under different experimental conditions, as well as in designing instrumentation and experiments to control CID/CIU behavior.

Symmetry reduction induced by argon tagging gives access to low-lying excited states of FeH+ in the overtone region of the Fe-H stretching mode

Iron is the most abundant transition metal in the interstellar medium (ISM), and is thought to be involved in a variety of astrochemical processes. Here, we present the infrared multiple photon dissociation (IRMPD) spectra of Ar1,2FeH+ and their deuterated isotopologues in the region of 2240-14 000 cm-1. The Fe-H overtone stretching mode in ArFeH+ and Ar2FeH+ is observed at 3636 ± 28 cm-1 and 3659 ± 13 cm-1, respectively. Deuteration shifts these bands to 2618 ± 31 cm-1 and 2650 ± 14 cm-1 in ArFeD+ and Ar2FeD+, respectively. Additionally, the spectra of Ar2FeH+ and Ar2FeD+ feature broad transitions at ∼2200-4000 cm-1 and ∼4500-6500 cm-1. We assign these bands to electronic transitions from the thermally populated X5A2/X'5A1 ground state manifold into the A'5B2 and B5A1 states, which we model with multi-reference quantum chemical calculations including spin-orbit coupling. The calculations show that these transitions are symmetry forbidden in FeH+ and in the equilibrium geometry of ArFeH+/ArFeD+, while the zero-point oscillation of the bending mode of the triatomic molecule leads to some oscillator strength. Upon addition of the second argon atom, the transitions become weakly allowed in the equilibrium geometry of Ar2FeH+/Ar2FeD+ due to symmetry reduction from C∞v to C2v.

Modeling collisional kinetic energy damping, heating, and cooling of ions in mass spectrometers: a tutorial perspective

Many powerful methods in mass spectrometry rely on activation of ions by high-energy collisions with gas particles. For example, multiple Collision Induced Dissociation (CID) has been used for many years to determine structural information for ions ranging from small organics to large, native-like protein complexes. More recently, Collision Induced Unfolding (CIU) has proved to be a very powerful method for understanding high-order protein structure and detecting differences between similar proteins. Quantifying the thermochemistry underlying dissociation/unfolding in these experiments can be quite challenging without reliable models of ion heating and cooling. Established physical models of CID are valuable in predicting ion heating but do not explicitly include mechanisms for cooling, which may play a large part in CID/CIU in modern instruments. Ab initio and Molecular Dynamics methods are extremely computationally expensive for modeling CID/CIU of large analytes such as biomolecular ions. In this tutorial perspective, limiting behaviors of ion kinetic energy damping, heating, and cooling set by "extreme" cases are explored, and an Improved Impulsive Collision Theory and associated software ("Ion Simulations of the Physics of Activation", IonSPA) are introduced that can model all of these for partially inelastic collisions. Finally, examples of modeled collisional activation of native-like protein ions under realistic experimental conditions are discussed, with an outlook toward the use of IonSPA in accessing the thermochemical information hidden in CID breakdown curves and CIU fingerprints.

Perspective: intrinsic interactions of metal ions with biological molecules as studied by threshold collision-induced dissociation and infrared multiple photon dissociation

In this perspective, gas-phase studies of group 1 monocations and group 12 dications with amino acids and small peptides are highlighted. Although the focus is on two experimental techniques, threshold collision-induced dissociation and infrared multiple photon dissociation action spectroscopy, these methods as well as complementary approaches are summarized. The synergistic interplay with theory, made particularly powerful by the small sizes of the systems explored and the absence of solvent and support, is also elucidated. Importantly, these gas-phase methods permit quantitative insight into the structures and thermodynamics of metal cations interacting with biological molecules. Periodic trends in how these interactions vary as the metal cations get heavier are discussed as are quantitative trends with changes in the amino acid side chain and effects of hydration. Such trends allow these results to transcend the limitations associated with the biomimetic model systems.

Master equation modeling of water dissociation in small ionic water clusters: Ag+(H2O) n , n = 4-6

We model temperature-dependent blackbody infrared radiative dissociation (BIRD) rate coefficients of Ag+(H2O) n , n = 4-6, a system with loosely bound water molecules. We employ a master equation modeling (MEM) approach with consideration of absorption and emission of blackbody radiation, comparing single and multiple-well descriptions. The unimolecular dissociation rate coefficients are obtained using the Rice-Ramsperger-Kassel-Marcus (RRKM) theory, employing two approaches to model the sum of states in the transition state, the rigid activated complex (RAC) and the phase space limit (PSL) approach. A genetic algorithm is used to find structures of low-lying isomers for the kinetic modeling. We show that the multiple-well MEM approach with PSL RRKM in the All Wells and Transition States Are Relevant (AWATAR) variant provides a reliable description of Ag+(H2O) n BIRD, in agreement with previously published experimental data. Higher-lying isomers contribute significantly to the overall dissociation rate coefficient, underlying the importance of the multiple-well ansatz in which all isomers are treated on the same footing.

Masked Reactivity of Hydrated Clusters of Monovalent Manganese Ions: Water Insertion versus Nitrous Oxide Activation-A Density Functional Theory Investigation

Previous mass spectrometric (MS) studies demonstrated that singly charged hydration clusters of manganese ions [Mn(H2O)n]+ were, on one hand, highly reactive toward intracluster water insertion but, on the other hand, inert toward nitrous oxide activation. This contrast in reactivity has been rationalized by our present theoretical investigation for the interconversion between the pristine Mn(I) monovalent form as a monatomic ion in [MnI(H2O)n]+ and the oxidized Mn(III) trivalent form as a hydride-hydroxide in [HMnIIIOH(H2O)n-1], as well as their reactivity toward nitrous oxide activation. Our theoretical interpretations are supported with quantum chemical calculations based on density functional theory (DFT), performed systematically for the cluster-size range of n = 1 - 12. Our DFT results show that water insertion is kinetically and thermodynamically favorable for n ≥ 8, suggesting [HMnIIIOH(H2O)n-1]+ is the predominant form, as observed in previous MS experiments. While [MnI(H2O)n]+ is capable of N2O reduction, the process of which is highly exothermic, similar reactions are unfavorable with [HMnIIIOH(H2O)n-1]+, which can only form weakly bound adducts with N2O. This work demonstrates the masking effect of water molecules over the high reactivity of the hydrated Mn(I) center and sheds light on the potential roles of water in transition metal systems.

A literature review of the increased intracellular free calcium concentration by biofield therapy or laser exposure. An explanation by using a theoretical study of hydrated calcium ions

INTRODUCTION

A revision of several experimental results on cells shows that electromagnetic radiation, either produced by biofield therapy (BFT) or laser, induced an increase in intracellular free calcium concentration. An explanation of this phenomenon is proposed.

METHODS

Quantum chemistry calculations were performed on Ca2+ with different degrees of hydration with the DFT/r2SCAN-3c method together with the implicit solvation model SMD.

RESULTS

Ca2+ dehydration energy by quantum calculations, in an aqueous medium, coincides with the experimental results of the energy of the photon emitted in biofield therapies and lasers. This strongly suggests that the increased intracellular free calcium concentration is because of calcium ion dehydration upon the application of radiation. The Ca2+ dehydration increases the membrane potential due to an augment of the net charge on Ca2+ and it moves near the membrane by the attraction of its negative ions. The voltage-dependent channels are also activated by this membrane potential.

CONCLUSION

The increased intracellular Ca2+ concentration occurs with biofield therapy (BFT) or laser. A novel explanation is given based on resonance-induced Ca2+ dehydration with applied radiation, supported by experimental data and theoretical calculations.

Master equation modeling of blackbody infrared radiative dissociation (BIRD) of hydrated peroxycarbonate radical anions

Molecular cluster ions, which are stored in an electromagnetic trap under ultra-high vacuum conditions, undergo blackbody infrared radiative dissociation (BIRD). This process can be simulated with master equation modeling (MEM), predicting temperature-dependent dissociation rate constants, which are very sensitive to the dissociation energy. We have recently introduced a multiple-well approach for master equation modeling, where several low-lying isomers are taken into account. Here, we experimentally measure the BIRD of CO4●-(H2O)1,2 and model the results with a slightly modified multiple-well MEM. In the experiment, we exclusively observe loss of water from CO4●-(H2O), while the BIRD of CO4●-(H2O)2 leads predominantly to loss of carbon dioxide, with water loss occurring to a lesser extent. The MEM of two competing reactions requires empirical scaling factors for infrared intensities and the sum of states of the loose transition states employed in the calculation of unimolecular rate constants so that the simulated branching ratio matches the experiment. The experimentally derived binding energies are ΔH0(CO4●--H2O) = 45 ± 3 kJ/mol, ΔH0(CO4●-(H2O)-H2O) = 41 ± 3 kJ/mol, and ΔH0(CO2-O2●-(H2O)2) = 37 ± 3 kJ/mol. Quantum chemical calculations on the CCSD(T)/aug-cc-pVTZ//CCSD/aug-cc-pVDZ level, corrected for the basis set superposition error, yield binding energies that are 2-5 kJ/mol higher than experiment, within error limits of both experiment and theory. The relative activation energies for the two competing loss channels are as well fully consistent with theory.

Tandem mass spectrometry using continuous-wave infrared multiphoton dissociation in an electrostatic linear ion trap

RATIONALE

The electrostatic linear ion trap (ELIT) can be operated as a multi-reflection time-of-flight (MR-TOF) or Fourier transform (FT) mass analyzer. It has been shown to be capable of performing high-resolution mass analysis and high-resolution ion isolations. Although it has been used in charge-detection mass spectrometry (CDMS), it has not been widely used as a conventional mass spectrometer for ensemble measurements of ions, or for tandem mass spectrometer. The advantages of tandem mass spectrometer with high-resolution ion isolations in the ELIT have thus not been fully exploited.

METHODS

A homebuilt ELIT was modified with BaF2 viewports to facilitate transmission of a laser beam at the turnaround point of the second ion mirror in the ELIT. Fragmentation that occurs at the turnaround point of these ion mirrors should result in minimal energy partitioning due to the low kinetic energy of ions at these points. The laser was allowed to irradiate ions for a period of many oscillations in the ELIT.

RESULTS

Due to the low energy absorption of gas-phase ions during each oscillation in the ELIT, fragmentation was found to occur over a range of oscillations in the ELIT generating a homogeneous ion beam. A mirror-switching pulse is shown to create time-varying perturbations in this beam that oscillate at the fragment ion characteristic frequencies and generate a time-domain signal. This was found to recover FT signal for protonated pYGGFL and pSGGFL precursor ions.

CONCLUSIONS

Fragmentation at the turnaround point of an ELIT by continuous-wave infrared multiphoton dissociation (cw-IRMPD) is demonstrated. In cases where laser power absorption is low and fragmentation occurs over many laps, a mirror-switching pulse may be used to recover varying time-domain signal. The combination of laser activation at the turnaround points and mirror-switching isolation allows for tandem MS in the ELIT.

Enantioselective Reduction of Noncovalent Complexes of Amino Acids with CuII via Resonant Collision-Induced Dissociation: Collision Energy, Activation Duration Effects, and RRKM Modeling

Formation of noncovalent complexes is one of the approaches to perform chiral analysis with mass spectrometry. Enantiomeric distinction of amino acids (AAs) based on the relative rate constants of competitive fragmentations of quaternary copper complexes is an efficient method for chiral differentiation. Here, we studied the complex [CuII,(Phe,PhG,Pro-H)]+ (m/z 493) under resonant collision-induced dissociation conditions while varying the activation time. The precursor ion can yield two main fragments through the loss of the non-natural AA phenylglycine (PhG): the expected product ion [CuII,(Phe,Pro-H)]+ (m/z 342) and the reduced product ion [CuI,(Phe,Pro)]+ (m/z 343). Enantioselective reduction describes the difference in relative abundance of these ions, which depends on the chirality of the precursor ion: the formation of the reduced ion m/z 343 is favored in homochiral complexes (DDD) compared to heterochiral complexes (such as LDD). Energy-resolved mass spectrometry data show that reduction, which arises from rearrangement, is favored at a low collision energy (CE) and long activation time (ActT), whereas direct cleavage preferentially occurs at a high CE and short ActT. These results were confirmed with kinetic modeling based on RRKM theory. For this modeling, it was necessary to set a pre-exponential factor as a reference, so that the E0 values obtained are relative values. Interestingly, these simulations showed that the critical energy E0 required to form the reduced ion is comparable in both homochiral and heterochiral complexes. However, the formation of product ion m/z 342 through direct cleavage is associated with a lower E0 in heterochiral complexes. Consequently, enantioselectivity would not be caused by enhanced reduction in homochiral complexes but rather by direct cleavage being favored in heterochiral complexes.

Energetics of key Au(III)-substrate adducts relevant to catalytic hydroarylation of alkynes

(P,C)-cyclometalated Au(III) complexes have shown remarkable ability to catalyze the intermolecular hydroarylation of alkynes. Evidence of an outer-sphere mechanism has been provided in a previous study and is confirmed here by analysing the experimental data and DFT calculations. In this work, we propose evaluation of critical energies of dissociation of Au(III) complexes with different substrates via energy-resolved mass spectrometry (ERMS) experiments and kinetic modelling. The kinetic model is based on a multi-collisional approach. On the one hand, the classification confirms the mechanism previously proposed; on the other hand, it supports the collisional model and its application to particularly fragile adducts.

Thermally Activated vs. Photochemical Hydrogen Evolution Reactions-A Tale of Three Metals

Molecular processes behind hydrogen evolution reactions can be quite complex. In macroscopic electrochemical cells, it is extremely difficult to elucidate and understand their mechanism. Gas phase models, consisting of a metal ion and a small number of water molecules, provide unique opportunities to understand the reaction pathways in great detail. Hydrogen evolution in clusters consisting of a singly charged metal ion and one to on the order of 50 water molecules has been studied extensively for magnesium, aluminum and vanadium. Such clusters with around 10-20 water molecules are known to eliminate atomic or molecular hydrogen upon mild activation by room temperature black-body radiation. Irradiation with ultraviolet light, by contrast, enables hydrogen evolution already with a single water molecule. Here, we analyze and compare the reaction mechanisms for hydrogen evolution on the ground state as well as excited state potential energy surfaces. Five distinct mechanisms for evolution of atomic or molecular hydrogen are identified and characterized.

Surface or Internal Hydration - Does It Really Matter?

The precise location of an ion or electron, whether it is internally solvated or residing on the surface of a water cluster, remains an intriguing question. Subtle differences in the hydrogen bonding network may lead to a preference for one or the other. Here we discuss spectroscopic probes of the structure of gas-phase hydrated ions in combination with quantum chemistry, as well as H/D exchange as a means of structure elucidation. With the help of nanocalorimetry, we look for thermochemical signatures of surface vs internal solvation. Examples of strongly size-dependent reactivity are reviewed which illustrate the influence of surface vs internal solvation on unimolecular rearrangements of the cluster, as well as on the rate and product distribution of ion-molecule reactions.

Simplified Multiple-Well Approach for the Master Equation Modeling of Blackbody Infrared Radiative Dissociation of Hydrated Carbonate Radical Anions

Blackbody infrared radiative dissociation (BIRD) in a collision-free environment is a powerful method for the experimental determination of bond dissociation energies. In this work, we investigate temperature-dependent BIRD of CO3·-(H2O)1,2 at 250-330 K to determine water binding energies and assess the influence of multiple isomers on the dissociation kinetics. The ions are trapped in a Fourier-transform ion cyclotron resonance mass spectrometer, mass selected, and their BIRD kinetics are recorded at varying temperatures. Experimental BIRD rates as a function of temperature are fitted with rates obtained from master equation modeling (MEM), using the water binding energy as a fit parameter. MEM accounts for the absorption and emission of photons from black-body radiation, described with harmonic frequencies and infrared intensities from quantum chemical calculations. The dissociation rates as a function of internal energy are calculated by Rice-Ramsperger-Kassel-Marcus theory. Both single-well and multiple-well MEM approaches are used. Dissociation energies derived in this way from the experimental data are 56 ± 6 and 45 ± 3 kJ/mol for the first and second water molecules, respectively. They agree within error limits with the ones predicted by ab initio calculations done at the CCSD(T)/aug-cc-pVQZ//CCSD/aug-cc-pVDZ level of theory. We show that the multiple-well MEM approach described here yields superior results in systems with several low-lying minima, which is the typical situation for hydrated ions.

Benchmarking higher energy collision dissociation (HCD) by investigation of binding energies of gas-phase host-guest complexes of hemicryptophane cages

Synthesis of host molecules that feature well-defined characteristics for molecular recognition of guest molecules is often a major aim of synthetic host-guest (H-G) chemistry. A key consideration in evaluating the selectivity of hosts and the affinities of guests is the measurement of binding energies of obtained H-G complexes. In contrast to nuclear magnetic resonance (NMR) or fluorescence measurements that are capable of measuring binding strengths in solution, mass spectrometry offers the opportunity to measure gas-phase binding energies. Presented in this article is a higher energy collision dissociation (HCD) approach for determining critical energies of dissociation of H-G complexes. Experiments were performed on electrospray ionization (ESI)-generated H-G pairs in an LTQ-XL/Orbitrap hybrid instrument. The presented HCD approach requires preliminary calibration of the internal energy distribution of generated ions that was achieved by the use of activation parameters that were known from previous low-energy collision-induced dissociation (low-energy CID) experiments. Internal energy deposition was modeled based on a truncated Maxwell-Boltzmann distribution and characteristic temperature (T_char ). Using this method, critical energies of dissociation were determined for 10 H-G biologically relevant complexes of the heteroditopic hemicryptophane cage host (Host). Obtained results are compared with those found previously by low-energy CID. The use of this HCD technique is relatively straightforward, although its implementation does require knowledge (or a presumption) about the Arrhenius pre-exponential factor of the complexes to obtain their critical energies of dissociation.

Gas-Phase Covalent Bond Formation via Nucleophilic Substitution: A Dissociation Kinetics Study of Leaving Groups, Isomeric R Groups, and Nucleophilic Sites

Nucleophilic substitution covalent modification ion/ion reactions were carried out in a linear quadrupole ion trap between the doubly protonated peptides KGAILKGAILR, RARARAA, and RKRARAA and isomers of either singly deprotonated 3- or 4-sulfobenzoic acid (n-SBA) esterified with either N-hydroxysuccinimide (NHS) or 1-hydroxy-7-aza-benzotriazole (HOBt). The cation/anion attachment product, through which the covalent reaction occurs, was isolated and subjected to dipolar DC (DDC) activation to generate covalently modified product over the ranges of DDC activation energies and times. The resulting survival yields were used to determine reaction rates, and Tolmachev's effective ion temperature was used to extract Arrhenius and Eyring activation parameters. It was found that the kinetics determined under these conditions are highly sensitive to the identities and locations of the nucleophilic sites on the peptides, the leaving groups on the reagent, and the location of the attachment sites on the reagent and analyte. Depending upon the identity of the analyte/reagent combination, significant variations in activation energy or entropy (or both) were both found to underlie the measured rate differences. The determination of dissociation kinetics under DDC conditions and application of Tolmachev's effective ion temperature treatment enables unique insights into the dynamics of gas-phase covalent bond formation via ion/ion reactions.

Size-dependent H and H2 formation by infrared multiple photon dissociation spectroscopy of hydrated vanadium cations, V+(H2O)n, n = 3-51

Infrared spectra of the hydrated vanadium cation (V⁺(H₂O)_n; n = 3–51) were measured in the O–H stretching region employing infrared multiple photon dissociation (IRMPD) spectroscopy. Spectral fingerprints, along with size-dependent fragmentation channels, were observed and rationalized by comparing to spectra simulated using density functional theory. Photodissociation leading to water loss was found for cluster sizes n = 3–7, consistent with isomers featuring intact water ligands. Loss of molecular hydrogen was observed as a weak channel starting at n = 8, indicating the advent of inserted isomers, HVOH⁺(H₂O)_n−1. The majority of ions for n = 8, however, are composed of two-dimensional intact isomers, concordant with previous infrared studies on hydrated vanadium. A third channel, loss of atomic hydrogen, is observed weakly for n = 9–11, coinciding with the point at which the H and H₂O calculated binding energies become energetically competitive for intact isomers. A clear and sudden spectral pattern and fragmentation channel intensity at n = 12 suggest a structural change to inserted isomers. The H₂ channel intensity decreases sharply and is not observed for n = 20 and 25–51. IRMPD spectra for clusters sizes n = 15–51 are qualitatively similar indicating no significant structural changes, and are thought to be composed of inserted isomers, consistent with recent electronic spectroscopy experiments.

Infrared multiple photon dissociation spectra of V⁺(H₂O)_n depend on experiment conditions, with strong kinetic shift effects for large clusters.

Infrared Multiple Photon Dissociation Spectroscopy Confirms Reversible Water Activation in Mn+(H2O)n, n ≤ 8

Controlled activation of water molecules is the key to efficient water splitting. Hydrated singly charged manganese ions Mn⁺(H₂O)_n exhibit a size-dependent insertion reaction, which is probed by infrared multiple photon dissociation spectroscopy (IRMPD) and FT-ICR mass spectrometry. The noninserted isomer of Mn⁺(H₂O)₄ is formed directly in the laser vaporization ion source, while its inserted counterpart HMnOH⁺(H₂O)₃ is selectively prepared by gentle removal of water molecules from larger clusters. The IRMPD spectra in the O-H stretch region of both systems are markedly different, and correlate very well with quantum chemical calculations of the respective species at the CCSD(T)/aug-cc-pVDZ//BHandHLYP/aug-cc-pVDZ level of theory. The calculated potential energy surface for water loss from HMnOH⁺(H₂O)₃ shows that this cluster ion is metastable. During IRMPD, the system rearranges back to the noninserted Mn⁺(H₂O)₃ structure, indicating that the inserted structure requires stabilization by hydration. The studied system serves as an atomically defined single-atom redox-center for reversible metal insertion into the O-H bond, a key step in metal-centered water activation.

Photochemical Hydrogen Evolution at Metal Centers Probed with Hydrated Aluminium Cations, Al+ (H2 O)n , n=1-10

Hydrated aluminium cations have been investigated as a photochemical model system with up to ten water molecules by UV action spectroscopy in a Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometer. Intense photodissociation was observed starting at 4.5 eV for two to eight water molecules with loss of atomic hydrogen, molecular hydrogen and water molecules. Quantum chemical calculations for n=2 reveal that solvation shifts the intense 3s-3p excitations of Al+ into the investigated photon energy range below 5.5 eV. During the photochemical relaxation, internal conversion from S1 to T2 takes place, and photochemical hydrogen formation starts on the T2 surface, which passes through a conical intersection, changing to T1 . On this triplet surface, the electron that was excited to the Al 3p orbital is transferred to a coordinated water molecule, which dissociates into a hydroxide ion and a hydrogen atom. If the system remains in the triplet state, this hydrogen radical is lost directly. If the system returns to singlet multiplicity, the reaction may be reversed, with recombination with the hydroxide moiety and electron transfer back to aluminium, resulting in water evaporation. Alternatively, the hydrogen radical can attack the intact water molecule, forming molecular hydrogen and aluminium dihydroxide. Photodissociation is observed for up to n=8. Clusters with n=9 or 10 occur exclusively as HAlOH+ (H2 O)n-1 and are transparent in the investigated energy range. For n=4-8, a mixture of Al+ (H2 O)n and HAlOH+ (H2 O)n-1 is present in the experiment.

DECAY DYNAMICS IN MOLECULAR BEAMS

The phenomenon of power law decays in molecular beams is reviewed. The transition from a canonical to a microcanonical description of the decay is analyzed, and the appearance of the power law decay derived. Deviations from a power law often contain information on parallel competing processes. This is illustrated with examples where thermal radiation or dark unimolecular channels are the competing processes. Also corrections to the power law due to finite heat capacities and from nonideal energy distributions are derived. Finally, the consequences for the interpretation of action spectroscopy data are reviewed. © 2020 The Authors. Mass Spectrometry Reviews published by Wiley Periodicals, Inc. Mass Spec Rev.

Mass Spectrometry of Nucleic Acid Noncovalent Complexes

Nucleic acids have been among the first targets for antitumor drugs and antibiotics. With the unveiling of new biological roles in regulation of gene expression, specific DNA and RNA structures have become very attractive targets, especially when the corresponding proteins are undruggable. Biophysical assays to assess target structure as well as ligand binding stoichiometry, affinity, specificity, and binding modes are part of the drug development process. Mass spectrometry offers unique advantages as a biophysical method owing to its ability to distinguish each stoichiometry present in a mixture. In addition, advanced mass spectrometry approaches (reactive probing, fragmentation techniques, ion mobility spectrometry, ion spectroscopy) provide more detailed information on the complexes. Here, we review the fundamentals of mass spectrometry and all its particularities when studying noncovalent nucleic acid structures, and then review what has been learned thanks to mass spectrometry on nucleic acid structures, self-assemblies (e.g., duplexes or G-quadruplexes), and their complexes with ligands.

Auf zur Wasserstoffentwicklung: Das Infrarot-Spektrum von hydratisiertem Aluminiumhydrid-Hydroxid HAlOH+(H2O)n-1, n=9-14

Hydratisierte Al+‐Ionen eliminieren H2 in einem Bereich von 11 bis 24 Wassermolekülen. Wir untersuchten die Struktur von HAlOH+(H2O)n−1, n=9–14, durch IR‐Mehrfachphotonendissoziationsspektroskopie bei 1400–2250 cm−1. Aufgrund quantenchemischer Rechnungen ordnen wir die Merkmale bei 1940 und 1850 cm−1 der Al‐H‐Streckschwingung in fünf‐ bzw. sechsfach koordinierten AlIII‐Komplexen zu. Es werden Wasserstoffbrücken in Richtung des Hydrids beobachtet, beginnend bei n=12. Die Frequenz der Al‐H‐Streckschwingung ist sehr empfindlich gegenüber der Struktur des Netzwerks aus Wasserstoffbrücken, und die große Anzahl von Isomeren führt zu einer deutlichen Verbreiterung und Rotverschiebung der Absorptionen der wasserstoffbrückengebundenen Al‐H‐Streckschwingung. Das Hydrid kann sogar als doppelter Wasserstoffbrücken‐Akzeptor wirken und die Al‐H‐Streckschwingung zu Frequenzen verschieben, die unter denen der Wasser‐Biegemoden liegen. Das Einsetzen der Wasserstoffbrückenbindung und das Verschwinden der freien Al‐H‐Streckschwingung fallen mit dem Einsetzen der Wasserstoffentwicklung zusammen.

Getting Ready for the Hydrogen Evolution Reaction: The Infrared Spectrum of Hydrated Aluminum Hydride-Hydroxide HAlOH+ (H2 O)n-1 , n=9-14

Hydrated singly charged aluminum ions eliminate molecular hydrogen in a size regime from 11 to 24 water molecules. Here we probe the structure of HAlOH+ (H2 O)n-1 , n=9-14, by infrared multiple photon spectroscopy in the region of 1400-2250 cm-1 . Based on quantum chemical calculations, we assign the features at 1940 cm-1 and 1850 cm-1 to the Al-H stretch in five- and six-coordinate aluminum(III) complexes, respectively. Hydrogen bonding towards the hydride is observed, starting at n=12. The frequency of the Al-H stretch is very sensitive to the structure of the hydrogen bonding network, and the large number of isomers leads to significant broadening and red-shifting of the absorption of the hydrogen-bonded Al-H stretch. The hydride can even act as a double hydrogen bond acceptor, shifting the Al-H stretch to frequencies below those of the water bending mode. The onset of hydrogen bonding and disappearance of the free Al-H stretch coincides with the onset of hydrogen evolution.

Versatile Double-Beam Confocal Laser System Combined with a Fourier Transform Ion Cyclotron Resonance Mass Spectrometer for Photodissociation Mass Spectrometry and Spectroscopy

Both infrared multiphoton dissociation (IRMPD) and ultraviolet photodissociation (UVPD) play important roles in tandem mass spectrometry and the action spectroscopy of organic and biological molecules. A flexible combination of the two methods may provide researchers with more versatile and powerful ion activation/dissociation choices for structural characterization and spectroscopic studies. Here, we report the integration of two tunable lasers with a Fourier transform ion cyclotron resonance mass spectrometer in a confocal mode, which offers multiple capabilities for photon activation/dissociation experiments. The two overlapped beams can be introduced into the cell individually, sequentially, or simultaneously, providing highly flexible and diverse activation schemes. The setup can also measure the UVPD or IRMPD action spectra of fragment ions generated by previous photon dissociation processes. In addition, the multistage tandem-in-time mass spectrometry performance up to MS⁴, including three different activation methods in a single cell, has also been demonstrated.

Asymmetric Solvation of the Zinc Dimer Cation Revealed by Infrared Multiple Photon Dissociation Spectroscopy of Zn2+(H2O)n (n = 1-20)

Investigating metal-ion solvation—in particular, the fundamental binding interactions—enhances the understanding of many processes, including hydrogen production via catalysis at metal centers and metal corrosion. Infrared spectra of the hydrated zinc dimer (Zn₂⁺(H₂O)_n; n = 1–20) were measured in the O–H stretching region, using infrared multiple photon dissociation (IRMPD) spectroscopy. These spectra were then compared with those calculated by using density functional theory. For all cluster sizes, calculated structures adopting asymmetric solvation to one Zn atom in the dimer were found to lie lower in energy than structures adopting symmetric solvation to both Zn atoms. Combining experiment and theory, the spectra show that water molecules preferentially bind to one Zn atom, adopting water binding motifs similar to the Zn⁺(H₂O)_n complexes studied previously. A lower coordination number of 2 was observed for Zn₂⁺(H₂O)₃, evident from the highly red-shifted band in the hydrogen bonding region. Photodissociation leading to loss of a neutral Zn atom was observed only for n = 3, attributed to a particularly low calculated Zn binding energy for this cluster size.

Spectroscopy and photochemistry of copper nitrate clusters

The investigation of copper nitrate cluster anions Cu(ii)n(NO3)2n+1-, n ≤ 4, in the gas phase using ultraviolet/visible/near-infrared (UV/vis/NIR) spectroscopy provides detailed insight into the electronic structure of the copper salt and its intriguing photochemistry. In the experimentally studied region up to 5.5 eV, the spectra of copper(ii) nitrate exhibit a 3d-3d band in the vis/NIR and well-separated bands in the UV. The latter bands originate from Ligand-to-Metal Charge Transfer (LMCT) as well as n-π* transitions in the nitrate ligands. The clusters predominantly decompose by loss of neutral copper nitrate in the electronic ground state after internal conversion or via the photochemical loss of a neutral NO3 ligand after a LMCT. These two decomposition channels are in direct competition on the ground state potential energy surface for the smallest copper nitrate cluster, Cu(ii)(NO3)3-. Here, copper nitrate evaporation is thermochemically less favorable. Population of π* orbitals in the nitrate ligands may lead to N-O bond photolysis. This is observed in the UV region with a small quantum efficiency, with photochemical loss of either nitrogen dioxide or an oxygen atom.

Infrared spectroscopy of CO3 •-(H2O)1,2 and CO4 •-(H2O)1,2

Hydrated molecular anions are present in the atmosphere. Revealing the structure of the microsolvation is key to understanding their chemical properties. The infrared spectra of CO₃ ^•-(H₂O)_1,2 and CO₄ ^•-(H₂O)_1,2 were measured via infrared multiple photon dissociation spectroscopy in both warm and cold environments. Redshifted from the free O-H stretch frequency, broad, structured spectra were observed in the O-H stretching region for all cluster ions, which provide information on the interaction of the hydrogen atoms with the central ion. In the C-O stretching region, the spectra exhibit clear maxima, but dissociation of CO₃ ^•-(H₂O)_1,2 was surprisingly inefficient. While CO₃ ^•-(H₂O)_1,2 and CO₄ ^•-(H₂O) dissociate via loss of water, CO₂ loss is the dominant dissociation channel for CO₄ ^•-(H₂O)₂. The experimental spectra are compared to calculated spectra within the harmonic approximation and from analysis of molecular dynamics simulations. The simulations support the hypothesis that many isomers contribute to the observed spectrum at finite temperatures. The highly fluxional nature of the clusters is the main reason for the spectral broadening, while water-water hydrogen bonding seems to play a minor role in the doubly hydrated species.

Microsolvation of Zn cations: infrared multiple photon dissociation spectroscopy of Zn+(H2O)n (n = 2-35)

The structures, along with solvation evolution, of size-selected Zn⁺(H₂O)_n (n = 2-35) complexes have been determined by combining infrared multiple photon photodissociation (IRMPD) spectroscopy and density functional theory. The infrared spectra were recorded in the O-H stretching region, revealing varying shifts in band position due to different water binding motifs. Concordant with previous studies, a coordination number of 3 is observed, determined by the sudden appearance of a broad, red-shifted band in the hydrogen bonding region for clusters n > 3. The coordination number of 3 seems to be retained even for the larger clusters, due to incoming ligands experiencing significant repulsion from the Zn⁺ valence 4s electron. Evidence of spectrally distinct single- and double-acceptor sites are presented for medium-sized clusters, 4 ≤n≤ 7, however for larger clusters, n≥ 8, the hydrogen bonding region is dominated by a broad, unresolved band, indicative of the increased number of second and third coordination sphere ligands. No evidence of a solvated, six-fold coordinated Zn²⁺ ion/solvated electron pair is present in the spectra.

Mapping the temperature-dependent and network site-specific onset of spectral diffusion at the surface of a water cluster cage

We explore the kinetic processes that sustain equilibrium in a microscopic, finite system. This is accomplished by monitoring the spontaneous, time-dependent frequency evolution (the frequency autocorrelation) of a single OH oscillator, embedded in a water cluster held in a temperature-controlled ion trap. The measurements are carried out by applying two-color, infrared-infrared photodissociation mass spectrometry to the D₃O⁺·(HDO)(D₂O)₁₉ isotopologue of the "magic number" protonated water cluster, H⁺·(H₂O)₂₁ The OH group can occupy any one of the five spectroscopically distinct sites in the distorted pentagonal dodecahedron cage structure. The OH frequency is observed to evolve over tens of milliseconds in the temperature range (90 to 120 K). Starting at 100 K, large "jumps" are observed between two OH frequencies separated by ∼300 cm^-1, indicating migration of the OH group from the bound OH site at 3,350 cm^-1 to the free position at 3,686 cm^-1 Increasing the temperature to 110 K leads to partial interconversion among many sites. All sites are observed to interconvert at 120 K such that the distribution of the unique OH group among them adopts the form one would expect for a canonical ensemble. The spectral dynamics displayed by the clusters thus offer an unprecedented view into the molecular-level processes that drive spectral diffusion in an extended network of water molecules.

TUTORIAL: ION ACTIVATION IN TANDEM MASS SPECTROMETRY USING ULTRA-HIGH RESOLUTION INSTRUMENTATION

Tandem mass spectrometry involves isolation of specific precursor ions and their subsequent excitation through collision-, photon-, or electron-mediated activation techniques in order to induce unimolecular dissociation leading to formation of fragment ions. These powerful ion activation techniques, typically used in between mass selection and mass analysis steps for structural elucidation, have not only found a wide variety of analytical applications in chemistry and biology, but they have also been used to study the fundamental properties of ions in the gas phase. In this tutorial paper, a brief overview is presented of the theories that have been used to describe the activation of ions and their subsequent unimolecular dissociation. Acronyms of the presented techniques include CID, PQD, HCD, SORI, SID, BIRD, IRMPD, UVPD, EPD, ECD, EDD, ETD, and EID. The fundamental principles of these techniques are discussed in the context of their implementation on ultra-high resolution tandem mass spectrometers. © 2020 John Wiley & Sons Ltd. Mass Spec Rev.

Chemistry of NOx and HNO3 Molecules with Gas-Phase Hydrated O.- and OH- Ions

The gas‐phase reactions of O^.−(H₂O)_n and OH⁻(H₂O)_n, n=20–38, with nitrogen‐containing atmospherically relevant molecules, namely NO_x and HNO₃, are studied by Fourier transform ion cyclotron resonance (FT‐ICR) mass spectrometry and theoretically with the use of DFT calculations. Hydrated O^.− anions oxidize NO^. and NO₂^. to NO₂⁻ and NO₃⁻ through a strongly exothermic reaction with enthalpy of −263±47 kJ mol⁻¹ and −286±42 kJ mol⁻¹, indicating a covalent bond formation. Comparison of the rate coefficients with collision models shows that the reactions are kinetically slow with 3.3 and 6.5 % collision efficiency. Reactions between hydrated OH⁻ anions and nitric oxides were not observed in the present experiment and are most likely thermodynamically hindered. In contrast, both hydrated anions are reactive toward HNO₃ through proton transfer from nitric acid, yielding hydrated NO₃⁻. Although HNO₃ is efficiently picked‐up by the water clusters, forming (HNO₃)_0–2(H₂O)_mNO₃⁻ clusters, the overall kinetics of nitrate formation are slow and correspond to an efficiency below 10 %. Combination of the measured reaction thermochemistry with literature values in thermochemical cycles yields ΔH_f(O⁻(aq.))=48±42 kJ mol⁻¹ and ΔH_f(NO₂⁻(aq.))=−125±63 kJ mol⁻¹.

UV/Vis Spectroscopy of Copper Formate Clusters: Insight into Metal-Ligand Photochemistry

The electronic structure and photochemistry of copper formate clusters, Cu^I₂(HCO₂)₃⁻ and Cu^II_n(HCO₂)_2n+1⁻, n≤8, are investigated in the gas phase by using UV/Vis spectroscopy in combination with quantum chemical calculations. A clear difference in the spectra of clusters with Cu^I and Cu^II copper ions is observed. For the Cu^I species, transitions between copper d and s/p orbitals are recorded. For stoichiometric Cu^II formate clusters, the spectra are dominated by copper d–d transitions and charge‐transfer excitations from formate to the vacant copper d orbital. Calculations reveal the existence of several energetically low‐lying isomers, and the energetic position of the electronic transitions depends strongly on the specific isomer. The oxidation state of the copper centers governs the photochemistry. In Cu^II(HCO₂)₃⁻, fast internal conversion into the electronic ground state is observed, leading to statistical dissociation; for charge‐transfer excitations, specific excited‐state reaction channels are observed in addition, such as formyloxyl radical loss. In Cu^I₂(HCO₂)₃⁻, the system relaxes to a local minimum on an excited‐state potential‐energy surface and might undergo fluorescence or reach a conical intersection to the ground state; in both cases, this provides substantial energy for statistical decomposition. Alternatively, a Cu^II(HCO₂)₃Cu⁰⁻ biradical structure is formed in the excited state, which gives rise to the photochemical loss of a neutral copper atom.

Evidence for lactone formation during infrared multiple photon dissociation spectroscopy of bromoalkanoate doped salt clusters

Reaction mechanisms of organic molecules in a salt environment are of fundamental interest and are potentially relevant for atmospheric chemistry, in particular sea-salt aerosols. Here, we found evidence for lactone formation upon infrared multiple photon dissociation (IRMPD) of non-covalent bromoalkanoate complexes as well as bromoalkanoate embedded in sodium iodide clusters. The mechanism of lactone formation from bromoalkanoates of different chain lengths is studied in the gas phase with and without salt environment by a combination of IRMPD and quantum chemical calculations. IRMPD spectra are recorded in the 833-3846 cmT¹ range by irradiating the clusters with tunable laser systems while they are stored in the cell of a Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometer. The measurements of the binary complex Br(CH2)_mCOOH·Br(CH2)_mCOO^- for m = 4 indicate valerolactone formation without salt environment while lactone formation is hindered for longer chain lengths. When embedded in sodium iodide clusters, butyrolactone formation from 4-bromobutyrate seems to take place already during formation of the doped clusters in the electrospray process, evidenced by the infrared (IR) signature of the lactone. In contrast, IRMPD spectra of sodium iodide clusters containing 5-bromovalerate contain signatures for both valerate as well as valerolactone. In both cases, however, a neutral fragment corresponding to the mass of valerolactone is eliminated, indicating that ring formation can be activated by IR light in the salt cluster. Quantum chemical calculations show that already complexation with one sodium ion significantly increases the barrier for lactone formation for all chain lengths. IRMPD of sodium iodide clusters doped with neutral bromoalkanoic acid molecules proceeds by elimination of HI or desorption of the intact acid molecule from the cluster.

Carbon Dioxide Activation at Metal Centers: Evolution of Charge Transfer from Mg .+ to CO2 in [MgCO2 (H2 O)n ].+ , n=0-8

We investigate activation of carbon dioxide by singly charged hydrated magnesium cations Mg ^.+(H₂O)_n, through infrared multiple photon dissociation (IRMPD) spectroscopy combined with quantum chemical calculations. The spectra of [MgCO₂(H₂O)_n]^.+ in the 1250–4000 cm⁻¹ region show a sharp transition from n=2 to n=3 for the position of the CO₂ antisymmetric stretching mode. This is evidence for the activation of CO₂ via charge transfer from Mg ^.+ to CO₂ for n≥3, while smaller clusters feature linear CO₂ coordinated end‐on to the metal center. Starting with n=5, we see a further conformational change, with CO₂^.− coordination to Mg²⁺ gradually shifting from bidentate to monodentate, consistent with preferential hexa‐coordination of Mg²⁺. Our results reveal in detail how hydration promotes CO₂ activation by charge transfer at metal centers.

Infrared Multiple Photon Dissociation Spectroscopy of Hydrated Cobalt Anions Doped with Carbon Dioxide CoCO2 (H2 O)n - , n=1-10, in the C-O Stretch Region

We investigate anionic [Co,CO2 ,nH2 O]- clusters as model systems for the electrochemical activation of CO2 by infrared multiple photon dissociation (IRMPD) spectroscopy in the range of 1250-2234 cm-1 using an FT-ICR mass spectrometer. We show that both CO2 and H2 O are activated in a significant fraction of the [Co,CO2 ,H2 O]- clusters since it dissociates by CO loss, and the IR spectrum exhibits the characteristic C-O stretching frequency. About 25 % of the ion population can be dissociated by pumping the C-O stretching mode. With the help of quantum chemical calculations, we assign the structure of this ion as Co(CO)(OH)2 - . However, calculations find Co(HCOO)(OH)- as the global minimum, which is stable against IRMPD under the conditions of our experiment. Weak features around 1590-1730 cm-1 are most likely due to higher lying isomers of the composition Co(HOCO)(OH)- . Upon additional hydration, all species [Co,CO2 ,nH2 O]- , n≥2, undergo IRMPD through loss of H2 O molecules as a relatively weakly bound messenger. The main spectral features are the C-O stretching mode of the CO ligand around 1900 cm-1 , the water bending mode mixed with the antisymmetric C-O stretching mode of the HCOO- ligand around 1580-1730 cm-1 , and the symmetric C-O stretching mode of the HCOO- ligand around 1300 cm-1 . A weak feature above 2000 cm-1 is assigned to water combination bands. The spectral assignment clearly indicates the presence of at least two distinct isomers for n ≥2.

Probing the Structural Evolution of the Hydrated Electron in Water Cluster Anions (H2O)n-, n ≤ 200, by Electronic Absorption Spectroscopy

Electronic absorption spectra of water cluster anions (H₂O)_n^–, n ≤ 200, at T = 80 K are obtained by photodissociation spectroscopy and compared with simulations from literature and experimental data for bulk hydrated electrons. Two almost isoenergetic electron binding motifs are seen for cluster sizes 20 ≤ n ≤ 40, which are assigned to surface and partially embedded isomers. With increasing cluster size, the surface isomer becomes less populated, and for n ≥ 50, the partially embedded isomer prevails. The absorption shifts to the blue, reaching a plateau at n ≈ 100. In this size range, the absorption spectrum is similar to that of the bulk hydrated electron but is slightly red-shifted; spectral moment analysis indicates that these clusters are reasonable model systems for hydrated electrons near the liquid–vacuum interface.

Infrared Spectroscopy of Size-Selected Hydrated Carbon Dioxide Radical Anions CO2 .- (H2 O)n (n=2-61) in the C-O Stretch Region

Understanding the intrinsic properties of the hydrated carbon dioxide radical anions CO2 .- (H2 O)n is relevant for electrochemical carbon dioxide functionalization. CO2 .- (H2 O)n (n=2-61) is investigated by using infrared action spectroscopy in the 1150-2220 cm-1 region in an ICR (ion cyclotron resonance) cell cooled to T=80 K. The spectra show an absorption band around 1280 cm-1 , which is assigned to the symmetric C-O stretching vibration νs . It blueshifts with increasing cluster size, reaching the bulk value, within the experimental linewidth, for n=20. The antisymmetric C-O vibration νas is strongly coupled with the water bending mode ν2 , causing a broad feature at approximately 1650 cm-1 . For larger clusters, an additional broad and weak band appears above 1900 cm-1 similar to bulk water, which is assigned to a combination band of water bending and libration modes. Quantum chemical calculations provide insight into the interaction of CO2 .- with the hydrogen-bonding network.

Electronic spectroscopy and nanocalorimetry of hydrated magnesium ions [Mg(H2O)n]+, n = 20-70: spontaneous formation of a hydrated electron?

Hydrated singly charged magnesium ions [Mg(H2O)n]+ are thought to consist of an Mg2+ ion and a hydrated electron for n > 15. This idea is based on mass spectra, which exhibit a transition from [MgOH(H2O)n-1]+ to [Mg(H2O)n]+ around n = 15-22, black-body infrared radiative dissociation, and quantum chemical calculations. Here, we present photodissociation spectra of size-selected [Mg(H2O)n]+ in the range of n = 20-70 measured for photon energies of 1.0-5.0 eV. The spectra exhibit a broad absorption from 1.4 to 3.2 eV, with two local maxima around 1.7-1.8 eV and 2.1-2.5 eV, depending on cluster size. The spectra shift slowly from n = 20 to n = 50, but no significant change is observed for n = 50-70. Quantum chemical modeling of the spectra yields several candidates for the observed absorptions, including five- and six-fold coordinated Mg2+ with a hydrated electron in its immediate vicinity, as well as a solvent-separated Mg2+/e- pair. The photochemical behavior resembles that of the hydrated electron, with barrierless interconversion into the ground state following the excitation.

Investigation of activation energies for dissociation of host-guest complexes in the gas phase using low-energy collision induced dissociation

A low-energy collision induced dissociation (CID) (low-energy CID) approach that can determine both activation energy and activation entropy has been used to evaluate gas-phase binding energies of host-guest (H-G) complexes of a heteroditopic hemicryptophane cage host (Zn (II)@1) with a series of biologically relevant guests. In order to use this approach, preliminary calibration of the effective temperature of ions undergoing resonance excitation is required. This was accomplished by employing blackbody infrared radiative dissociation (BIRD) which allows direct measurement of activation parameters. Activation energies and pre-exponential factors were evaluated for more than 10 H-G complexes via the use of low-energy CID. The relatively long residence time of the ions inside the linear ion trap (maximum of 60 s) allowed the study of dissociations with rates below 1 s^-1 . This possibility, along with the large size of the investigated ions, ensures the fulfilment of rapid energy exchange (REX) conditions and, as a consequence, accurate application of the Arrhenius equation. Compared with the BIRD technique, low-energy CID allows access to higher effective temperatures, thereby permitting one to probe more endothermic decomposition pathways. Based on the measured activation parameters, guests bearing a phosphate (-OPO₃ ^2- ) functional group were found to bind more strongly with the encapsulating cage than those having a sulfonate (-SO₃ ^- ) group; however, the latter ones make stronger bonds than those with a carboxylate (-CO₂ ^- ) group. In addition, it was observed that the presence of trimethylammonium (-N(CH₃ )₃ ⁺ ) or phenyl groups in the guest's structure improves the strength of H-G interactions. The use of this technique is very straightforward, and it does not require any instrumental modifications. Thus, it can be applied to other H-G chemistry studies where comparison of bond dissociation energies is of paramount importance.

Extended kinetic method and RRKM modeling to reinvestigate proline's proton affinity and approach the meaning of effective temperature

Proline proton affinity PA(Pro) was previously measured by extended kinetic methods with several amines as reference bases using a triple quadrupole mass spectrometer ( J Mass Spectrom 2005; 40: 1300). The measured value of 947.5 ± 5 kJ.mol^-1 differs by more than 10 kJ.mol^-1 from previous reported experimental or calculated values. This difference may be explained in part by the existence of relatively large entropy difference between the two dissociation channels (ΔΔS^‡_avg = 31 ± 10 J.mol^-1.K^-1) and by the inaccuracy of the amines proton affinity used as reference bases. In the present work, these experimental measurements were reinvestigated by RRKM modeling using MassKinetics software. From this modeling, a new PA value of 944.5 ± 5 kJ.mol^-1 and a ΔΔS^‡_avg(600K) value of 33 ± 10 J.mol^-1.K^-1 are determined. However, the difference between experiment and recent theoretical calculations remains large (10 kJ.mol^-1). These RRKM simulations allow also accessing to the effective temperature parameter (T _eff) and to discuss the meaning of this term. As previously reported, T _eff mainly depends on the internal energy and on the decomposition time as well. It also depends on the critical energies and on the transition state. Considering the entrance of the collision cell as a new ion source, T _eff is finally shown to be close to a characteristic temperature (T _char).

Investigation of Hemicryptophane Host-Guest Binding Energies Using High-Pressure Collision-Induced Dissociation in Combination with RRKM Modeling

In advancing host-guest (H-G) chemistry, considerable effort has been spent to synthesize host molecules with specific and well-defined molecular recognition characteristics including selectivity and adjustable affinity. An important step in the process is the characterization of binding strengths of the H-G complexes that is typically performed in solution using NMR or fluorescence. Here, we present a mass spectrometry-based multimodal approach to obtain critical energies of dissociation for two hemicryptophane cages with three biologically relevant guest molecules. A combination of blackbody infrared radiative dissociation (BIRD) and high-pressure collision-induced dissociation (high-pressure CID), along with RRKM modeling, was employed for this purpose. For the two tested hemicryptophane hosts, the cage containing naphthyl linkages exhibited stronger interactions than the cage bearing phenyl linkages. For both cages, the order of guest stability is choline > acetylcholine > betaine. The information obtained by these types of mass spectrometric studies can provide new insight into the structural features that most influence the stability of H-G pairs, thereby providing guidance for future syntheses. Graphical Abstract.

Infrared multiple photon dissociation of cesium iodide clusters doped with mono-, di- and triglycine

Charged cesium iodide clusters doped with mono-, di- and triglycine serve as a model system for sea salt aerosols containing biological molecules. Here, we investigate reactions of these complexes under infrared irradiation, with spectra obtained by infrared multiple photon dissociation. The cluster ions are generated via electrospray ionization and analyzed in the cell of a Fourier Transform Ion Cyclotron Resonance Mass Spectrometer. Depending on the cluster size and peptide length, loss of HI or loss of a glycine unit is observed. The experimental measurements are supported by quantum chemical calculations. We show that N-H and O-H stretching modes dominate the spectrum, with large shifts depending on local interactions, namely due to interaction with iodide anions or intramolecular hydrogen bonding. Both experiment and theory indicate that several isomers are present in the experimental mixture, with different infrared fingerprints as well as dissociation pathways.

CO2/O2 Exchange in Magnesium-Water Clusters Mg+(H2O) n

Hydrated singly charged metal ions doped with carbon dioxide, Mg2+(CO2)-(H2O) n, in the gas phase are valuable model systems for the electrochemical activation of CO2. Here, we study these systems by Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry combined with ab initio calculations. We show that the exchange reaction of CO2 with O2 proceeds fast with bare Mg+(CO2), with a rate coefficient kabs = 1.2 × 10-10 cm3 s-1, while hydrated species exhibit a lower rate in the range of kabs = (1.2-2.4) × 10-11 cm3 s-1 for this strongly exothermic reaction. Water makes the exchange reaction more exothermic but, at the same time, considerably slower. The results are rationalized with a need for proper orientation of the reactants in the hydrated system, with formation of a Mg2+(CO4)-(H2O) n intermediate while the activation energy is negligible. According to our nanocalorimetric analysis, the exchange reaction of the hydrated ion is exothermic by -1.7 ± 0.5 eV, in agreement with quantum chemical calculations.

Carbon-carbon bond formation in the reaction of hydrated carbon dioxide radical anions with 3-butyn-1-ol

Electrochemical activation of carbon dioxide in aqueous solution is a promising way to use carbon dioxide as a C1 building block. Mechanistic studies in the gas phase play an important role to understand the inherent chemical reactivity of the carbon dioxide radical anion. Here, the reactivity of CO2 •-(H2O)n with 3-butyn-1-ol is investigated by Fourier transform ion cyclotron (FT-ICR) mass spectrometry and quantum chemical calculations. Carbon-carbon bond formation takes places, but is associated with a barrier. Therefore, bond formation may require uptake of several butynol molecules. The water molecules slowly evaporate from the cluster due to the absorption of room temperature black-body radiation. When all water molecules are lost, butynol evaporation sets in. In this late stage of the reaction, side reactions occur including H• atom transfer and elimination of HOCO•.

Quantification of noncovalent interactions – promises and problems

Quantification of noncovalent interactions is the key for the understanding of binding mechanisms, of biological systems, for the design of drugs, their delivery and for the design of receptors for separations, sensors, actuators, or smart materials.

Bond dissociation energies of carbonyl gold complexes: a new descriptor of ligand effects in gold(i) complexes?

Ligand electronic effects in gold(i) chemistry have been evaluated by means of the experimental determination of M-CO bond dissociation energies for 16 [L-Au-CO]⁺ complexes, bearing L ligands widely used in gold catalysis. Energy-resolved analyses have been made using tandem mass spectrometry with collision-induced dissociation. Coupled with DFT calculations, this approach enables the quantification of ligand effects based on the LAu-CO bond strength. A further energy decomposition analysis gives access to detailed insights into this bond's characteristics. Whereas small differences are observed between phosphine- and phosphite-containing gold complexes, carbene ligands are shown to stabilize the gold-carbonyl bond much more efficiently.