1
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Huong LT, Anh TT, Hang NM, Thao VM, Nhiem NX, Dang NH. Stereochemical assignment of four monoterpene glucoside derivatives from Turpinia montana Kurz by NMR study combined with CD spectroscopy. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2024; 62:629-635. [PMID: 38699783 DOI: 10.1002/mrc.5451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 04/13/2024] [Accepted: 04/16/2024] [Indexed: 05/05/2024]
Affiliation(s)
- Le Thanh Huong
- University of Science and Technology of Hanoi, Vietnam Academy of Science and Technology (VAST), Hanoi, Vietnam
| | - Tran Tuan Anh
- University of Science and Technology of Hanoi, Vietnam Academy of Science and Technology (VAST), Hanoi, Vietnam
| | | | - Vu Mai Thao
- Institute of Marine Biochemistry, VAST, Hanoi, Vietnam
| | | | - Nguyen Hai Dang
- University of Science and Technology of Hanoi, Vietnam Academy of Science and Technology (VAST), Hanoi, Vietnam
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2
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Yang X, Zhang H, Zhao Q, Li Q, Li T, Gao J. Total Synthesis of the Repeating Units of Highly Functionalized O-Antigens of Pseudomonas aeruginosa ATCC 27577, O10, and O19. JACS AU 2024; 4:2351-2362. [PMID: 38938791 PMCID: PMC11200240 DOI: 10.1021/jacsau.4c00321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/09/2024] [Revised: 05/24/2024] [Accepted: 05/29/2024] [Indexed: 06/29/2024]
Abstract
The first total synthesis of the repeating units of the O-antigens of Pseudomonas aeruginosa ATCC 27577, O10, and O19 was achieved via a linear glycosylation strategy. This also represents the first synthesis of an oligosaccharide containing an α-linked N-acetyl-l-galactosaminuronic acid (l-GalpNAcA) unit. All of the glycosyl linkages, including three challenging 1,2-cis-glycosidic bonds of amino sugars, were effectively constructed with high to exclusive stereoselectivity, while orthogonal protection tactics were employed to facilitate regioselective glycosylations and the introduction of a variety of functionalities. An acetyl group migration phenomenon was found during the synthesis of the O-acylated repeating unit of the P. aeruginosa ATCC 27577 antigen. All synthetic targets carried an amino functional group in the linker at the reducing end, thus facilitating further regioselective elaboration and biological studies. The synthetic strategy established here should be useful for the preparation of other similar oligosaccharides.
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Affiliation(s)
- Xiaoyu Yang
- National
Glycoengineering Research Center, Shandong Key Laboratory of Carbohydrate
Chemistry and Glycobiology, Shandong University, Qingdao ,Shandong 266237, China
- NMPA
Key Laboratory for Quality Research and Evaluation of Carbohydrate-Based
Medicine, Shandong University, Qingdao ,Shandong 266237, China
| | - Han Zhang
- Department
of Pharmacy, Shandong University of Traditional
Chinese Medicine, Jinan ,Shandong 250355, China
| | - Qingpeng Zhao
- National
Glycoengineering Research Center, Shandong Key Laboratory of Carbohydrate
Chemistry and Glycobiology, Shandong University, Qingdao ,Shandong 266237, China
- NMPA
Key Laboratory for Quality Research and Evaluation of Carbohydrate-Based
Medicine, Shandong University, Qingdao ,Shandong 266237, China
| | - Qingjiang Li
- Department
of Chemistry, University of Massachusetts
Boston, 100 Morrissey Boulevard, Boston, Massachusetts 02125, United States
| | - Tiehai Li
- State
Key Laboratory of Chemical Biology, Shanghai Institute of Materia
Medica, Chinese Academy of Sciences, Shanghai 201203, China
| | - Jian Gao
- National
Glycoengineering Research Center, Shandong Key Laboratory of Carbohydrate
Chemistry and Glycobiology, Shandong University, Qingdao ,Shandong 266237, China
- NMPA
Key Laboratory for Quality Research and Evaluation of Carbohydrate-Based
Medicine, Shandong University, Qingdao ,Shandong 266237, China
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3
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Lassfolk R, Leino R. Mechanism of Acyl Group Migration in Carbohydrates. Chemistry 2023; 29:e202301489. [PMID: 37265378 DOI: 10.1002/chem.202301489] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Revised: 05/30/2023] [Accepted: 06/02/2023] [Indexed: 06/03/2023]
Abstract
Acyl group migration has been the subject of several studies. Such migration processes may cause problems during synthesis, isolation, and purification of different acyl-bearing compounds, and have biological relevance, for example, in the metabolism of pharmaceuticals. Considering the recent evidence of acyl group migration being possible even over glycosidic bonds, it could be hypothesized to be involved also in the regulation of biological activity of natural polysaccharides in the host cells. Migrations are mostly observed in carbohydrates, typically having several hydroxyl groups near each other. Several studies have investigated the migration in a single or only a few different carbohydrate molecules, providing different suggestions for the mechanisms of migration, seldom supported by comprehensive computational investigations. In this concept article we discuss the recent progress on the mechanistic aspects of acyl group migration, with carbohydrates in particular focus.
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Affiliation(s)
- Robert Lassfolk
- Turku Centre for Chemical and Molecular Analytics, Åbo Akademi University, 20500, Turku, Finland
| | - Reko Leino
- Laboratory of Molecular Science and Engineering, Åbo Akademi University, 20500, Turku, Finland
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4
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Qiu X, Chong D, Fairbanks AJ. Selective Anomeric Acetylation of Unprotected Sugars with Acetic Anhydride in Water. Org Lett 2023; 25:1989-1993. [PMID: 36912487 DOI: 10.1021/acs.orglett.3c00584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2023]
Abstract
Unprotected sugars are selectively acetylated simply by stirring in aqueous solution in the presence of acetic anhydride and a weak base such as sodium carbonate. The reaction is selective for acetylation of the anomeric hydroxyl group of mannose, 2-acetamido, and 2-deoxy sugars and can be performed on a large scale. Competitive intramolecular migration of the 1-O-acetate to the 2-hydroxyl group when these two substituents are cis causes over-reaction and the formation of product mixtures.
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Affiliation(s)
- Xin Qiu
- School of Physical and Chemical Sciences, University of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand
| | - Daniel Chong
- School of Physical and Chemical Sciences, University of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand
| | - Antony J Fairbanks
- School of Physical and Chemical Sciences, University of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand
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5
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Lassfolk R, Pedrón M, Tejero T, Merino P, Wärnå J, Leino R. Acyl Group Migration in Pyranosides as Studied by Experimental and Computational Methods. Chemistry 2022; 28:e202200499. [PMID: 35302249 PMCID: PMC9322027 DOI: 10.1002/chem.202200499] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Indexed: 12/14/2022]
Abstract
Acyl group migration affects the synthesis, isolation, manipulation and purification of all acylated organic compounds containing free hydroxyl groups, in particular carbohydrates. While several isolated studies on the migration phenomenon in different buffers have been reported, comprehensive insights into the overall migration process in different monosaccharides under similar conditions have been lacking. Here, we have studied the acyl migration in different monosaccharides using five different acyl groups by a combination of experimental, kinetic and theoretical tools. The results show that the anomeric configuration in the monosaccharide has a major influence on the migration rate, together with the relative configurations of the other hydroxyl groups and the nature of the migrating acyl group. Full mechanistic model, based on computations, demonstrates that the acyl migration proceeds through an anionic stepwise mechanism with linear dependence on the [OH−] and the pKa of the hydroxyl group toward which the acyl group is migrating.
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Affiliation(s)
- Robert Lassfolk
- Laboratory of Molecular Science and Engineering, Åbo Akademi University, 20500, Turku, Finland
| | - Manuel Pedrón
- Institute of Biocomputation & Physics of Complex Systems (BIFI), University of Zaragoza, 50009, Zaragoza, Spain
| | - Tomás Tejero
- Institute of Chemical Synthesis & Homogeneous Catalysis (ISQCH), University of Zaragoza, 50009, Zaragoza, Spain
| | - Pedro Merino
- Institute of Biocomputation & Physics of Complex Systems (BIFI), University of Zaragoza, 50009, Zaragoza, Spain
| | - Johan Wärnå
- Laboratory of Industrial Chemistry and Reaction Engineering, Åbo Akademi University, 20500, Turku, Finland
| | - Reko Leino
- Laboratory of Molecular Science and Engineering, Åbo Akademi University, 20500, Turku, Finland
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6
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Montes AS, León EI, Martin A, Pérez-Martín I, Suárez E. Free‐Radical Epimerization of D‐ into L‐C‐(glycosyl)methanol Compounds Using 1,5‐Hydrogen Atom Transfer Reaction. European J Org Chem 2022. [DOI: 10.1002/ejoc.202101391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Adrián S. Montes
- IPNA: Instituto de Productos Naturales y Agrobiologia Síntesis de Productos Naturales Avda. Astrofisico Francisco Sanchez 3 38206 La Laguna SPAIN
| | - Elisa I León
- IPNA: Instituto de Productos Naturales y Agrobiologia Síntesis de Productos Naturales Avda. Astrofisico Francisco Sanchez 3 38206 La Laguna SPAIN
| | - Angeles Martin
- Instituto de Productos Naturales Y Agrobiolog�a, CSIC Sintesis de Productos Naturales Avda. Astrofisico Fco. Sanchez 3 38205 La Laguna SPAIN
| | - Inés Pérez-Martín
- IPNA: Instituto de Productos Naturales y Agrobiologia Síntesis de Productos Naturales Avda. Astrofisico Francisco Sanchez 3 38206 La Laguna SPAIN
| | - Ernesto Suárez
- IPNA: Instituto de Productos Naturales y Agrobiologia Síntesis de Productos Naturales Avda. Astrofisico Francisco Sanchez 3 38206 La Laguna SPAIN
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Wang HT, Bharadwaj VS, Yang JY, Curry TM, Moremen KW, Bomble YJ, Urbanowicz BR. Rational enzyme design for controlled functionalization of acetylated xylan for cell-free polymer biosynthesis. Carbohydr Polym 2021; 273:118564. [PMID: 34560975 DOI: 10.1016/j.carbpol.2021.118564] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Revised: 08/02/2021] [Accepted: 08/13/2021] [Indexed: 11/18/2022]
Abstract
Xylan O-acetyltransferase 1 (XOAT1) is involved in O-acetylating the backbone of hemicellulose xylan. Recent structural analysis of XOAT1 showed two unequal lobes forming a cleft that is predicted to accommodate and position xylan acceptors into proximity with the catalytic triad. Here, we used docking and molecular dynamics simulations to investigate the optimal orientation of xylan in the binding cleft of XOAT1 and identify putative key residues (Gln445 and Arg444 on Minor lobe & Asn312, Met311 and Asp403 on Major lobe) involved in substrate interactions. Site-directed mutagenesis coupled with biochemical analyses revealed the major lobe of XOAT1 is important for xylan binding. Mutation of single key residues yielded XOAT1 variants with various enzymatic efficiencies that are applicable to one-pot synthesis of xylan polymers with different degrees of O-acetylation. Taken together, our results demonstrate the effectiveness of computational modeling in guiding enzyme engineering aimed at modulating xylan and redesigning plant cell walls.
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Affiliation(s)
- Hsin-Tzu Wang
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA; Department of Biochemistry and Molecular Biology, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA
| | - Vivek S Bharadwaj
- Renewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, 16253 Denver West Parkway, Golden, CO 80401, USA
| | - Jeong-Yeh Yang
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA; Department of Biochemistry and Molecular Biology, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA
| | - Thomas M Curry
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA; Department of Biochemistry and Molecular Biology, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA
| | - Kelley W Moremen
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA; Department of Biochemistry and Molecular Biology, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA
| | - Yannick J Bomble
- Bioscience Center, National Renewable Energy Laboratory, 16253 Denver West Parkway, Golden, CO 80401, USA
| | - Breeanna R Urbanowicz
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA; Department of Biochemistry and Molecular Biology, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA.
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8
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Lassfolk R, Bertuzzi S, Ardá A, Wärnå J, Jiménez‐Barbero J, Leino R. Kinetic Studies of Acetyl Group Migration between the Saccharide Units in an Oligomannoside Trisaccharide Model Compound and a Native Galactoglucomannan Polysaccharide. Chembiochem 2021; 22:2986-2995. [PMID: 34405515 PMCID: PMC8597014 DOI: 10.1002/cbic.202100374] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Indexed: 01/11/2023]
Abstract
Acyl group migration is a fundamental phenomenon in carbohydrate chemistry, recently shown to take place also between two non-adjacent hydroxyl groups, across the glycosidic bond, in a β-(1→4)-linked mannan trisaccharide model compound. With the central mannoside unit containing acetyl groups at the O2 and O3 positions, the O2-acetyl was in the earlier study shown to migrate to O6 of the reducing end. Potential implications of the general acyl migration process on cell signaling events and plant growth in nature are intriguing open questions. In the present work, migration kinetics in this original trisaccharide model system were studied in more detail together with potential interactions of the model compound and the migration products with DC-SIGN lectin. Furthermore, we demonstrate here for the first time that similar migration may also take place in native polysaccharides, here represented by galactoglucomannan from Norway spruce.
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Affiliation(s)
- Robert Lassfolk
- Laboratory of Molecular Science and EngineeringÅbo Akademi University20500TurkuFinland
| | - Sara Bertuzzi
- Chemical Glycobiology LaboratoryCIC bioGUNEBizkaia Technology Park, Building 80048160DerioSpain
| | - Ana Ardá
- Chemical Glycobiology LaboratoryCIC bioGUNEBizkaia Technology Park, Building 80048160DerioSpain
- Ikerbasque, Basque Foundation for SciencePlaza Euskadi 548009BilbaoSpain
| | - Johan Wärnå
- Laboratory of Industrial Chemistry and Reaction EngineeringÅbo Akademi University20500TurkuFinland
| | - Jesús Jiménez‐Barbero
- Chemical Glycobiology LaboratoryCIC bioGUNEBizkaia Technology Park, Building 80048160DerioSpain
- Ikerbasque, Basque Foundation for SciencePlaza Euskadi 548009BilbaoSpain
- Department of Organic & Inorganic ChemistryUniversity of the Basque Country, UPV/EHU48940LeioaBizkaiaSpain
| | - Reko Leino
- Laboratory of Molecular Science and EngineeringÅbo Akademi University20500TurkuFinland
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9
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Hettikankanamalage AA, Lassfolk R, Ekholm FS, Leino R, Crich D. Mechanisms of Stereodirecting Participation and Ester Migration from Near and Far in Glycosylation and Related Reactions. Chem Rev 2020; 120:7104-7151. [PMID: 32627532 PMCID: PMC7429366 DOI: 10.1021/acs.chemrev.0c00243] [Citation(s) in RCA: 105] [Impact Index Per Article: 26.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
This review is the counterpart of a 2018 Chemical Reviews article (Adero, P. O.; Amarasekara, H.; Wen, P.; Bohé, L.; Crich, D. Chem. Rev. 2018, 118, 8242-8284) that examined the mechanisms of chemical glycosylation in the absence of stereodirecting participation. Attention is now turned to a critical review of the evidence in support of stereodirecting participation in glycosylation reactions by esters from either the vicinal or more remote positions. As participation by esters is often accompanied by ester migration, the mechanism(s) of migration are also reviewed. Esters are central to the entire review, which accordingly opens with an overview of their structure and their influence on the conformations of six-membered rings. Next the structure and relative energetics of dioxacarbeniun ions are covered with emphasis on the influence of ring size. The existing kinetic evidence for participation is then presented followed by an overview of the various intermediates either isolated or characterized spectroscopically. The evidence supporting participation from remote or distal positions is critically examined, and alternative hypotheses for the stereodirecting effect of such esters are presented. The mechanisms of ester migration are first examined from the perspective of glycosylation reactions and then more broadly in the context of partially acylated polyols.
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Affiliation(s)
- Asiri A. Hettikankanamalage
- Department of Pharmaceutical and Biomedical Sciences, University of Georgia, 250 West Green Street, Athens, GA 30602, USA
- Department of Chemistry, University of Georgia, 140 Cedar Street, Athens, GA 30602, USA
| | - Robert Lassfolk
- Johan Gadolin Process Chemistry Centre, Laboratory of Molecular Science and Technology, Åbo Akademi University, 20500 Åbo, Finland
| | - Filip S. Ekholm
- Department of Chemistry, University of Helsinki, A. I. Virtasen aukio 1, 00014 Helsinki, Finland
| | - Reko Leino
- Johan Gadolin Process Chemistry Centre, Laboratory of Molecular Science and Technology, Åbo Akademi University, 20500 Åbo, Finland
| | - David Crich
- Department of Pharmaceutical and Biomedical Sciences, University of Georgia, 250 West Green Street, Athens, GA 30602, USA
- Department of Chemistry, University of Georgia, 140 Cedar Street, Athens, GA 30602, USA
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA
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A pair of esterases from a commensal gut bacterium remove acetylations from all positions on complex β-mannans. Proc Natl Acad Sci U S A 2020; 117:7122-7130. [PMID: 32170022 DOI: 10.1073/pnas.1915376117] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Abstract
β-mannans and xylans are important components of the plant cell wall and they are acetylated to be protected from degradation by glycoside hydrolases. β-mannans are widely present in human and animal diets as fiber from leguminous plants and as thickeners and stabilizers in processed foods. There are many fully characterized acetylxylan esterases (AcXEs); however, the enzymes deacetylating mannans are less understood. Here we present two carbohydrate esterases, RiCE2 and RiCE17, from the Firmicute Roseburia intestinalis, which together deacetylate complex galactoglucomannan (GGM). The three-dimensional (3D) structure of RiCE17 with a mannopentaose in the active site shows that the CBM35 domain of RiCE17 forms a confined complex, where the axially oriented C2-hydroxyl of a mannose residue points toward the Ser41 of the catalytic triad. Cavities on the RiCE17 surface may accept galactosylations at the C6 positions of mannose adjacent to the mannose residue being deacetylated (subsite -1 and +1). In-depth characterization of the two enzymes using time-resolved NMR, high-performance liquid chromatography (HPLC), and mass spectrometry demonstrates that they work in a complementary manner. RiCE17 exclusively removes the axially oriented 2-O-acetylations on any mannose residue in an oligosaccharide, including double acetylated mannoses, while the RiCE2 is active on 3-O-, 4-O-, and 6-O-acetylations. Activity of RiCE2 is dependent on RiCE17 removing 2-O-acetylations from double acetylated mannose. Furthermore, transacetylation of oligosaccharides with the 2-O-specific RiCE17 provided insight into how temperature and pH affects acetyl migration on manno-oligosaccharides.
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11
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Nguyen TTA, Ha MT, Park SE, Choi JS, Min BS, Kim JA. Stilbenes with Potent Protein Tyrosine Phosphatase-1B Inhibitory Activity from the Roots of Polygonum multiflorum. JOURNAL OF NATURAL PRODUCTS 2020; 83:323-332. [PMID: 31944695 DOI: 10.1021/acs.jnatprod.9b00777] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Seven new stilbene glycosides including three dimers (1-3) and four monomers (4-7) were isolated from the roots of Polygonum multiflorum along with nine previously identified stilbenes (8-16). In addition, two deglucosylated stilbenes, 2a and 3a, were also obtained as new dimeric stilbenes. The structures of the purified phytochemicals were elucidated by interpreting their spectroscopic data (NMR, HRMS, and ECD). To the best of our knowledge, this represents the first isolation of a phenylpropanoid (C6-C3) substituted with a stilbene unit (7) from the Polygonaceae family. In an in vitro enzyme assay with human recombinant protein tyrosine phosphatase-1B (PTP1B), compounds 2-5 showed weak PTP1B inhibition with an IC50 value range of 27.4-37.6 μM, while three deglucosylated stilbenes 2a, 3a, and 8a exhibited IC50 values of 2.1, 1.9, and 12.1 μM, respectively. The inhibition modes and binding mechanism of selected inhibitors (2a and 3a) were investigated using kinetic methods and molecular docking simulations.
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Affiliation(s)
- Thi-Thuy An Nguyen
- College of Pharmacy, Research Institute of Pharmaceutical Sciences , Kyungpook National University , Daegu 41566 , Republic of Korea
| | - Manh Tuan Ha
- College of Pharmacy, Drug Research and Development Center , Daegu Catholic University , Gyeongbuk 38430 , Republic of Korea
| | - Se-Eun Park
- Department of Food and Life Science , Pukyong National University , Busan 48513 , Republic of Korea
| | - Jae Sue Choi
- Department of Food and Life Science , Pukyong National University , Busan 48513 , Republic of Korea
| | - Byung Sun Min
- College of Pharmacy, Drug Research and Development Center , Daegu Catholic University , Gyeongbuk 38430 , Republic of Korea
| | - Jeong Ah Kim
- College of Pharmacy, Research Institute of Pharmaceutical Sciences , Kyungpook National University , Daegu 41566 , Republic of Korea
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12
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Lassfolk R, Rahkila J, Johansson MP, Ekholm FS, Wärnå J, Leino R. Acetyl Group Migration across the Saccharide Units in Oligomannoside Model Compound. J Am Chem Soc 2019; 141:1646-1654. [PMID: 30586298 DOI: 10.1021/jacs.8b11563] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Acetylated oligosaccharides are common in nature. While they are involved in several biochemical and biological processes, the role of the acetyl groups and the complexity of their migration has largely gone unnoticed. In this work, by combination of organic synthesis, NMR spectroscopy and quantum chemical modeling, we show that acetyl group migration is a much more complex phenomenon than previously known. By use of synthetic oligomannoside model compounds, we demonstrate, for the first time, that the migration of acetyl groups in oligosaccharides and polysaccharides may not be limited to transfer within a single monosaccharide moiety, but may also involve migration over a glycosidic bond between two different saccharide units. The observed phenomenon is not only interesting from the chemical point of view, but it also raises new questions about the potential biological role of acylated carbohydrates in nature.
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Affiliation(s)
- Robert Lassfolk
- Johan Gadolin Process Chemistry Centre, Laboratory of Organic Chemistry, Åbo Akademi University , FI-20500 Åbo , Finland
| | - Jani Rahkila
- Johan Gadolin Process Chemistry Centre, Laboratory of Organic Chemistry, Åbo Akademi University , FI-20500 Åbo , Finland
| | - Mikael P Johansson
- Department of Chemistry , University of Helsinki , FI-00014 Helsinki , Finland.,Helsinki Institute of Sustainability Science, HELSUS , FI-00014 Helsinki , Finland
| | - Filip S Ekholm
- Department of Chemistry , University of Helsinki , FI-00014 Helsinki , Finland
| | - Johan Wärnå
- Johan Gadolin Process Chemistry Centre, Laboratory of Industrial Chemistry and Reaction Engineering, Åbo Akademi University , FI-20500 Åbo , Finland
| | - Reko Leino
- Johan Gadolin Process Chemistry Centre, Laboratory of Organic Chemistry, Åbo Akademi University , FI-20500 Åbo , Finland
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13
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A new look at acid catalyzed deacetylation of carbohydrates: A regioselective synthesis and reactivity of 2-O-acetyl aryl glycopyranosides. Carbohydr Res 2018; 458-459:60-66. [DOI: 10.1016/j.carres.2018.02.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2017] [Revised: 01/28/2018] [Accepted: 02/04/2018] [Indexed: 11/21/2022]
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14
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Kroeger AA, Karton A. A Computational Investigation of the Uncatalysed and Water-Catalysed Acyl Rearrangements in Ingenol Esters. Aust J Chem 2018. [DOI: 10.1071/ch17501] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Ingenol esters have been identified as potent anticancer and HIV latency reversing agents. Ingenol-3-angelate was recently approved as a topical treatment for precancerous actinic keratosis skin lesions. It was found, however, that ingenol esters can undergo a series of acyl rearrangements, which may affect their biological potency and the shelf-life of drug formulations. We use double-hybrid density functional theory to explore the mechanisms for the uncatalysed and water-catalysed acyl migrations in a model ingenol ester. The uncatalysed reaction may proceed either via a concerted mechanism or via a stepwise mechanism that involves a chiral orthoester intermediate. We find that the stepwise pathway is kinetically preferred by a significant amount of ΔΔH‡298 = 44.5 kJ mol−1. The uncatalysed 3-O-acyl to 5-O-acyl and 5-O-acyl to 20-O-acyl stepwise rearrangements involve cyclisation and ring-opening steps, both concomitant with a proton transfer. We find that the ring-opening step is the rate-determining step for both rearrangements, with reaction barrier heights of ΔH‡298 = 251.6 and 177.1 kJ mol−1 respectively. The proton transfers in the cyclisation and ring-opening steps may be catalysed by a water molecule. The water catalyst reduces the reaction barrier heights of these steps by over 90 kJ mol−1.
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15
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Hixson JL, Hayasaka Y, Curtin CD, Sefton MA, Taylor DK. Hydroxycinnamoyl Glucose and Tartrate Esters and Their Role in the Formation of Ethylphenols in Wine. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2016; 64:9401-9411. [PMID: 27960298 DOI: 10.1021/acs.jafc.6b04074] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Synthesized p-coumaroyl and feruloyl l-tartrate esters were submitted to Brettanomyces bruxellensis strains AWRI 1499, AWRI 1608, and AWRI 1613 to assess their role as precursors to ethylphenols in wine. No evolution of ethylphenols was observed. Additionally, p-coumaroyl and feruloyl glucose were synthesized and submitted to B. bruxellensis AWRI 1499, which yielded both 4-ethylphenol and 4-ethylguaiacol. Unexpected chemical transformations of the hydroxycinnamoyl glucose esters during preparation were investigated to prevent these in subsequent synthetic attempts. Photoisomerization gave an isomeric mixture containing the trans-esters and undesired cis-esters, and acyl migration resulted in a mixture of the desired 1-O-β-ester and two additional migrated forms, the 2-O-α- and 6-O-α-esters. Theoretical studies indicated that the photoisomerization was facilitated by deprotonation of the phenol, and acyl migration is favored during acidic, nonaqueous handling. Preliminary LC-MS/MS studies observed the migrated hydroxycinnamoyl glucose esters in wine and allowed for identification of feruloyl glucose in red wine for the first time.
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Affiliation(s)
- Josh L Hixson
- School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus , PMB 1, Glen Osmond, South Australia 5064, Australia
| | - Yoji Hayasaka
- The Australian Wine Research Institute , P.O. Box 197, Glen Osmond, Glen Osmond, South Australia 5064, Australia
| | - Christopher D Curtin
- The Australian Wine Research Institute , P.O. Box 197, Glen Osmond, Glen Osmond, South Australia 5064, Australia
| | - Mark A Sefton
- School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus , PMB 1, Glen Osmond, South Australia 5064, Australia
| | - Dennis K Taylor
- School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus , PMB 1, Glen Osmond, South Australia 5064, Australia
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Muszyński A, Heiss C, Hjuler CT, Sullivan JT, Kelly SJ, Thygesen MB, Stougaard J, Azadi P, Carlson RW, Ronson CW. Structures of Exopolysaccharides Involved in Receptor-mediated Perception of Mesorhizobium loti by Lotus japonicus. J Biol Chem 2016; 291:20946-20961. [PMID: 27502279 DOI: 10.1074/jbc.m116.743856] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2016] [Indexed: 11/06/2022] Open
Abstract
In the symbiosis formed between Mesorhizobium loti strain R7A and Lotus japonicus Gifu, rhizobial exopolysaccharide (EPS) plays an important role in infection thread formation. Mutants of strain R7A affected in early exopolysaccharide biosynthetic steps form nitrogen-fixing nodules on L. japonicus Gifu after a delay, whereas mutants affected in mid or late biosynthetic steps induce uninfected nodule primordia. Recently, it was shown that a plant receptor-like kinase, EPR3, binds low molecular mass exopolysaccharide from strain R7A to regulate bacterial passage through the plant's epidermal cell layer (Kawaharada, Y., Kelly, S., Nielsen, M. W., Hjuler, C. T., Gysel, K., Muszyński, A., Carlson, R. W., Thygesen, M. B., Sandal, N., Asmussen, M. H., Vinther, M., Andersen, S. U., Krusell, L., Thirup, S., Jensen, K. J., et al. (2015) Nature 523, 308-312). In this work, we define the structure of both high and low molecular mass exopolysaccharide from R7A. The low molecular mass exopolysaccharide produced by R7A is a monomer unit of the acetylated octasaccharide with the structure (2,3/3-OAc)β-d-RibfA-(1→4)-α-d-GlcpA-(1→4)-β-d-Glcp-(1→6)-(3OAc)β-d-Glcp-(1→6)-*[(2OAc)β-d-Glcp-(1→4)-(2/3OAc)β-d-Glcp-(1→4)-β-d-Glcp-(1→3)-β-d-Galp]. We propose it is a biosynthetic constituent of high molecular mass EPS polymer. Every new repeating unit is attached via its reducing-end β-d-Galp to C-4 of the fourth glucose (asterisked above) of the octasaccharide, forming a branch. The O-acetylation occurs on the four glycosyl residues in a non-stoichiometric ratio, and each octasaccharide subunit is on average substituted with three O-acetyl groups. The availability of these structures will facilitate studies of EPR3 receptor binding of symbiotically compatible and incompatible EPS and the positive or negative consequences on infection by the M. loti exo mutants synthesizing such EPS variants.
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Affiliation(s)
- Artur Muszyński
- From the Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602,
| | - Christian Heiss
- From the Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
| | - Christian T Hjuler
- the Department of Chemistry, University of Copenhagen, 1871 Frederiksberg C, Denmark
| | - John T Sullivan
- the Department of Microbiology and Immunology, University of Otago, Dunedin 9016, New Zealand
| | - Simon J Kelly
- the Department of Microbiology and Immunology, University of Otago, Dunedin 9016, New Zealand
| | - Mikkel B Thygesen
- the Department of Chemistry, University of Copenhagen, 1871 Frederiksberg C, Denmark
| | - Jens Stougaard
- the Department of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark, and
| | - Parastoo Azadi
- From the Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
| | - Russell W Carlson
- From the Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
| | - Clive W Ronson
- the Department of Microbiology and Immunology, University of Otago, Dunedin 9016, New Zealand,
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Zhang Z, Wang X, Yang W, Wang J, Su C, Liu X, Li J, Zhao Y, Shi S, Tu P. Five 2-(2-Phenylethyl)chromones from Sodium Chloride-Elicited Aquilaria sinensis Cell Suspension Cultures. Molecules 2016; 21:molecules21050555. [PMID: 27128895 PMCID: PMC6274510 DOI: 10.3390/molecules21050555] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2016] [Revised: 04/20/2016] [Accepted: 04/21/2016] [Indexed: 12/19/2022] Open
Abstract
Five 2-(2-phenylethyl)chromones including a new one, (5S,6R,7S,8R)-5,8-dichloro-6,7-dihydroxy-2-phenylethyl-5,6,7,8-tetrahydro-4H-chromen-4-one (1), and four known ones (2–5), were isolated from 150 mM NaCl-elicited Aquilaria sinensis cell suspension cultures. In addition, three feruloyl amides (6–8), six nucleosides (9–14), (+)-syringaresinol (15), indole-3-carboxaldehyde (16), and two glycosides (17–18) were also obtained. The structures were unambiguously identified by analysis of their UV, IR, NMR, and HRESIMS data. The absolute configuration of the new 2-(2-phenylethyl)chromone (1) was established by a dimolybdenum tetraacetate-induced circular dichroism experiment. Compared to un-elicited cell lines, the appearance of 2-(2-phenylethyl)chromones in NaCl-treated cells occurred on the 3rd and 5th days of their treatment. 2-(2-Phenylethyl)chromones, feruloyl amides, nucleosides, and lignins have been reported to be closely related to plant defense; therefore, the identification of these compounds from NaCl-elicited A. sinensis cell suspension cultures would be useful for further exploring the mechanism of agarwood formation.
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Affiliation(s)
- Zhongxiu Zhang
- Modern Research Center for Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China.
- School of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 100102, China.
| | - Xiaohui Wang
- Modern Research Center for Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China.
| | - Wanqing Yang
- Modern Research Center for Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China.
- School of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 100102, China.
| | - Juan Wang
- Modern Research Center for Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China.
- School of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 100102, China.
| | - Cong Su
- Modern Research Center for Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China.
- School of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 100102, China.
| | - Xiao Liu
- Modern Research Center for Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China.
| | - Jun Li
- Modern Research Center for Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China.
| | - Yunfang Zhao
- Modern Research Center for Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China.
| | - Shepo Shi
- Modern Research Center for Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China.
| | - Pengfei Tu
- Modern Research Center for Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China.
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González A, Rodríguez M, Braña AF, Méndez C, Salas JA, Olano C. New insights into paulomycin biosynthesis pathway in Streptomyces albus J1074 and generation of novel derivatives by combinatorial biosynthesis. Microb Cell Fact 2016; 15:56. [PMID: 27001601 PMCID: PMC4802897 DOI: 10.1186/s12934-016-0452-4] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2016] [Accepted: 03/09/2016] [Indexed: 12/16/2022] Open
Abstract
Background Streptomyces albus J1074 produces glycosylated antibiotics paulomycin A, B and E that derive from chorismate and contain an isothiocyanate residue in form of paulic acid. Paulomycins biosynthesis pathway involves two glycosyltransferases, three acyltransferases, enzymes required for paulic acid biosynthesis (in particular an aminotransferase and a sulfotransferase), and enzymes involved in the biosynthesis of two deoxysugar moieties: D-allose and L-paulomycose. Results Inactivation of genes encoding enzymes involved in deoxysugar biosynthesis, paulic acid biosynthesis, deoxysugar transfer, and acyl moieties transfer has allowed the identification of several biosynthetic intermediates and shunt products, derived from paulomycin intermediates, and to propose a refined version of the paulomycin biosynthesis pathway. Furthermore, several novel bioactive derivatives of paulomycins carrying modifications in the L-paulomycose moiety have been generated by combinatorial biosynthesis using different plasmids that direct the biosynthesis of alternative deoxyhexoses. Conclusions The paulomycins biosynthesis pathway has been defined by inactivation of genes encoding glycosyltransferases, acyltransferases and enzymes involved in paulic acid and L-paulomycose biosynthesis. These experiments have allowed the assignment of each of these genes to specific paulomycin biosynthesis steps based on characterization of products accumulated by the corresponding mutant strains. In addition, novel derivatives of paulomycin A and B containing L-paulomycose modified moieties were generated by combinatorial biosynthesis. The production of such derivatives shows that L-paulomycosyl glycosyltransferase Plm12 possesses a certain degree of flexibility for the transfer of different deoxysugars. In addition, the pyruvate dehydrogenase system form by Plm8 and Plm9 is also flexible to catalyze the attachment of a two-carbon side chain, derived from pyruvate, into both 2,6-dideoxyhexoses and 2,3,6-trideoxyhexoses. The activity of the novel paulomycin derivatives carrying modifications in the L-paulomycose moiety is lower than the original compounds pointing to some interesting structure–activity relationships. Electronic supplementary material The online version of this article (doi:10.1186/s12934-016-0452-4) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Aránzazu González
- Departamento de Biología Funcional e Instituto Universitario de Oncología del Principado de Asturias (I.U.O.P.A), Universidad de Oviedo, C/Julian Claveria s/n, 33006, Oviedo (Asturias), Spain
| | - Miriam Rodríguez
- Departamento de Biología Funcional e Instituto Universitario de Oncología del Principado de Asturias (I.U.O.P.A), Universidad de Oviedo, C/Julian Claveria s/n, 33006, Oviedo (Asturias), Spain
| | - Alfredo F Braña
- Departamento de Biología Funcional e Instituto Universitario de Oncología del Principado de Asturias (I.U.O.P.A), Universidad de Oviedo, C/Julian Claveria s/n, 33006, Oviedo (Asturias), Spain
| | - Carmen Méndez
- Departamento de Biología Funcional e Instituto Universitario de Oncología del Principado de Asturias (I.U.O.P.A), Universidad de Oviedo, C/Julian Claveria s/n, 33006, Oviedo (Asturias), Spain
| | - José A Salas
- Departamento de Biología Funcional e Instituto Universitario de Oncología del Principado de Asturias (I.U.O.P.A), Universidad de Oviedo, C/Julian Claveria s/n, 33006, Oviedo (Asturias), Spain
| | - Carlos Olano
- Departamento de Biología Funcional e Instituto Universitario de Oncología del Principado de Asturias (I.U.O.P.A), Universidad de Oviedo, C/Julian Claveria s/n, 33006, Oviedo (Asturias), Spain.
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Identification of the nucleophile catalytic residue of GH51 α-L-arabinofuranosidase from Pleurotus ostreatus. AMB Express 2015; 5:79. [PMID: 26690659 PMCID: PMC4686458 DOI: 10.1186/s13568-015-0164-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2015] [Accepted: 11/12/2015] [Indexed: 11/21/2022] Open
Abstract
In this study, the recombinant α-l-arabinofuranosidase from the fungus Pleurotus ostreatus (rPoAbf) was subjected to site-directed mutagenesis in order to identify the catalytic nucleophile residue. Based on bioinformatics and homology modelling analyses, E449 was revealed to be the potential nucleophilic residue. Thus, the mutant E449G of PoAbf was recombinantly expressed in Pichia pastoris and its recombinant expression level and reactivity were investigated in comparison to the wild-type. The design of a suitable set of hydrolysis experiments in the presence or absence of alcoholic arabinosyl acceptors and/or formate salts allowed to unambiguously identify the residue E449 as the nucleophile residue involved in the retaining mechanism of this GH51 arabinofuranosidase. 1H NMR analysis was applied for the identification of the products and the assignement of their anomeric configuration.
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20
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Dvorakova M, Pribylova M, Pohl R, Migaud ME, Vanek T. Alkyloxycarbonyl group migration in furanosides. Tetrahedron 2012. [DOI: 10.1016/j.tet.2012.05.117] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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21
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Baba A, Yoshioka T. Complementary and Synergistic Roles in Enzyme-Catalyzed Regioselective and Complete Hydrolytic Deprotection of O-Acetylated β-d-Glucopyranosides of N-Arylacetohydroxamic Acids. J Org Chem 2012; 77:1675-84. [DOI: 10.1021/jo202123s] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Akiko Baba
- Hokkaido Pharmaceutical University School of Pharmacy, 7-1 Katsuraoka-cho, Otaru, Hokkaido 047-0264,
Japan
| | - Tadao Yoshioka
- Hokkaido Pharmaceutical University School of Pharmacy, 7-1 Katsuraoka-cho, Otaru, Hokkaido 047-0264,
Japan
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22
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Pacher T, Raninger A, Lorbeer E, Brecker L, But PPH, Greger H. Alcoholysis of naturally occurring imides: misleading interpretation of antifungal activities. JOURNAL OF NATURAL PRODUCTS 2010; 73:1389-1393. [PMID: 20701297 DOI: 10.1021/np1003092] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
The frequent presence of the sulfur-containing amide penangin (10) in leaf extracts of Glycosmis species turned out to be the result of decomposition of imides generated by extraction and storage in MeOH. Reinvestigation of Glycosmis mauritiana and G. cf. puberula with acetone revealed the presence of six imides. In addition to penimides A (1) and B (2) and ritigalin (6), three new derivatives, krabin (4), isokrabin (5), and methoxypenimide B (3), were isolated and identified by spectroscopic methods. All six imides were shown to be susceptible to different rates of methanolic cleavage, leading to their corresponding methyl esters and sulfur-containing amides. Whereas the decomposition products penangin (10), isopenangin (11), and sinharin (14) are known, the corresponding cleavage of methyl N-methylthiocarbamate (7) from ritigalin (6), monitored in situ by (1)H NMR spectroscopy, is described here for the first time. Its structure was further confirmed by GC-MS coupling. HPLC-UV comparison of many different samples of G. mauritiana, extracted with MeOH, revealed considerable chemical variations in sulfur-containing amides, strongly correlated with different antifungal potency. The lack of activity of many methanolic crude extracts can be explained by a preponderance of the inactive decomposition product penangin (10), whereas the corresponding naturally occurring imides penimides A (1) and B (2) and methoxypenimide B (3), extracted with acetone, showed high fungitoxic properties.
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Affiliation(s)
- Thomas Pacher
- Comparative and Ecological Phytochemistry, Faculty Center of Botany, University of Vienna, Rennweg 14, A-1030 Wien, Austria
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Goedl C, Sawangwan T, Wildberger P, Nidetzky B. Sucrose phosphorylase: a powerful transglucosylation catalyst for synthesis of α-D-glucosides as industrial fine chemicals. BIOCATAL BIOTRANSFOR 2009. [DOI: 10.3109/10242420903411595] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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