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Nutricati E, De Pascali M, Negro C, Bianco PA, Quaglino F, Passera A, Pierro R, Marcone C, Panattoni A, Sabella E, De Bellis L, Luvisi A. Signaling Cross-Talk between Salicylic and Gentisic Acid in the ' Candidatus Phytoplasma Solani' Interaction with Sangiovese Vines. PLANTS (BASEL, SWITZERLAND) 2023; 12:2695. [PMID: 37514309 PMCID: PMC10383235 DOI: 10.3390/plants12142695] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 07/13/2023] [Accepted: 07/14/2023] [Indexed: 07/30/2023]
Abstract
"Bois noir" disease associated with 'Candidatus Phytoplasma solani' seriously compromises the production and survival of grapevines (Vitis vinifera L.) in Europe. Understanding the plant response to phytoplasmas should help to improve disease control strategies. Using a combined metabolomic and transcriptomic analysis, this work, therefore, investigated the phytoplasma-grapevine interaction in red cultivar Sangiovese in a vineyard over four seasonal growth stages (from late spring to late summer), comparing leaves from healthy and infected grapevines (symptomatic and symptomless). We found an accumulation of both conjugate and free salicylic acids (SAs) in the leaves of 'Ca. P. solani'-positive plants from early stages of infection, when plants are still asymptomatic. A strong accumulation of gentisic acid (GA) associated with symptoms progression was found for the first time. A detailed analysis of phenylpropanoids revealed a significant accumulation of hydroxycinnamic acids, flavonols, flavan 3-ols, and anthocyanin cyanidin 3-O-glucoside, which are extensively studied due to their involvement in the plant response to various pathogens. Metabolomic data corroborated by gene expression analysis indicated that phenylpropanoid biosynthetic and salicylic acid-responsive genes were upregulated in 'Ca. P. solani-positive plants compared to -negative ones during the observed period.
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Affiliation(s)
- Eliana Nutricati
- Department of Biological and Environmental Sciences and Technologies, University of Salento, Via Provinciale Lecce-Monteroni, 73100 Lecce, Italy
| | - Mariarosaria De Pascali
- Department of Biological and Environmental Sciences and Technologies, University of Salento, Via Provinciale Lecce-Monteroni, 73100 Lecce, Italy
| | - Carmine Negro
- Department of Biological and Environmental Sciences and Technologies, University of Salento, Via Provinciale Lecce-Monteroni, 73100 Lecce, Italy
| | - Piero Attilio Bianco
- Department of Agricultural and Environmental Sciences, Production, Landscape, Agroenergy (DiSAA), University of Milan, Via Celoria 2, 20133 Milano, Italy
| | - Fabio Quaglino
- Department of Agricultural and Environmental Sciences, Production, Landscape, Agroenergy (DiSAA), University of Milan, Via Celoria 2, 20133 Milano, Italy
| | - Alessandro Passera
- Department of Agricultural and Environmental Sciences, Production, Landscape, Agroenergy (DiSAA), University of Milan, Via Celoria 2, 20133 Milano, Italy
| | - Roberto Pierro
- Department of Pharmacy, University of Salerno, Via Giovanni Paolo II, 132, 84084 Fisciano, Italy
| | - Carmine Marcone
- Department of Pharmacy, University of Salerno, Via Giovanni Paolo II, 132, 84084 Fisciano, Italy
| | - Alessandra Panattoni
- Department of Agriculture, Food and Environment (DAFE), University of Pisa, Via del Borghetto 80, 56124 Pisa, Italy
| | - Erika Sabella
- Department of Biological and Environmental Sciences and Technologies, University of Salento, Via Provinciale Lecce-Monteroni, 73100 Lecce, Italy
| | - Luigi De Bellis
- Department of Biological and Environmental Sciences and Technologies, University of Salento, Via Provinciale Lecce-Monteroni, 73100 Lecce, Italy
| | - Andrea Luvisi
- Department of Biological and Environmental Sciences and Technologies, University of Salento, Via Provinciale Lecce-Monteroni, 73100 Lecce, Italy
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Škrlj B, Novak MP, Brader G, Anžič B, Ramšak Ž, Gruden K, Kralj J, Kladnik A, Lavrač N, Roitsch T, Dermastia M. New Cross-Talks between Pathways Involved in Grapevine Infection with ' Candidatus Phytoplasma solani' Revealed by Temporal Network Modelling. PLANTS (BASEL, SWITZERLAND) 2021; 10:646. [PMID: 33805409 PMCID: PMC8065506 DOI: 10.3390/plants10040646] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 03/18/2021] [Accepted: 03/24/2021] [Indexed: 12/17/2022]
Abstract
Understanding temporal biological phenomena is a challenging task that can be approached using network analysis. Here, we explored whether network reconstruction can be used to better understand the temporal dynamics of bois noir, which is associated with 'Candidatus Phytoplasma solani', and is one of the most widespread phytoplasma diseases of grapevine in Europe. We proposed a methodology that explores the temporal network dynamics at the community level, i.e., densely connected subnetworks. The methodology offers both insights into the functional dynamics via enrichment analysis at the community level, and analyses of the community dissipation, as a measure that accounts for community degradation. We validated this methodology with cases on experimental temporal expression data of uninfected grapevines and grapevines infected with 'Ca. P. solani'. These data confirm some known gene communities involved in this infection. They also reveal several new gene communities and their potential regulatory networks that have not been linked to 'Ca. P. solani' to date. To confirm the capabilities of the proposed method, selected predictions were empirically evaluated.
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Affiliation(s)
- Blaž Škrlj
- Jožef Stefan International Postgraduate School, 1000 Ljubljana, Slovenia;
- Jožef Stefan Institute, 1000 Ljubljana, Slovenia;
| | - Maruša Pompe Novak
- National Institute of Biology, 1000 Ljubljana, Slovenia; (M.P.N.); (B.A.); (Ž.R.); (K.G.); (M.D.)
- School of Viticulture and Enology, University of Nova Gorica, 5271 Vipava, Slovenia
| | - Günter Brader
- Austrian Institute of Technology, Bioresources Unit, 3430 Tulln, Austria;
| | - Barbara Anžič
- National Institute of Biology, 1000 Ljubljana, Slovenia; (M.P.N.); (B.A.); (Ž.R.); (K.G.); (M.D.)
| | - Živa Ramšak
- National Institute of Biology, 1000 Ljubljana, Slovenia; (M.P.N.); (B.A.); (Ž.R.); (K.G.); (M.D.)
| | - Kristina Gruden
- National Institute of Biology, 1000 Ljubljana, Slovenia; (M.P.N.); (B.A.); (Ž.R.); (K.G.); (M.D.)
| | - Jan Kralj
- Jožef Stefan Institute, 1000 Ljubljana, Slovenia;
| | - Aleš Kladnik
- Department of Biology, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia;
| | - Nada Lavrač
- Jožef Stefan International Postgraduate School, 1000 Ljubljana, Slovenia;
- Jožef Stefan Institute, 1000 Ljubljana, Slovenia;
| | - Thomas Roitsch
- Department of Plant and Environmental Sciences, University of Copenhagen, 2630 Taastrup, Denmark;
| | - Marina Dermastia
- National Institute of Biology, 1000 Ljubljana, Slovenia; (M.P.N.); (B.A.); (Ž.R.); (K.G.); (M.D.)
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3
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Differential Response of Grapevine to Infection with ' Candidatus Phytoplasma solani' in Early and Late Growing Season through Complex Regulation of mRNA and Small RNA Transcriptomes. Int J Mol Sci 2021; 22:ijms22073531. [PMID: 33805429 PMCID: PMC8037961 DOI: 10.3390/ijms22073531] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Revised: 03/24/2021] [Accepted: 03/25/2021] [Indexed: 02/08/2023] Open
Abstract
Bois noir is the most widespread phytoplasma grapevine disease in Europe. It is associated with ‘Candidatus Phytoplasma solani’, but molecular interactions between the causal pathogen and its host plant are not well understood. In this work, we combined the analysis of high-throughput RNA-Seq and sRNA-Seq data with interaction network analysis for finding new cross-talks among pathways involved in infection of grapevine cv. Zweigelt with ‘Ca. P. solani’ in early and late growing seasons. While the early growing season was very dynamic at the transcriptional level in asymptomatic grapevines, the regulation at the level of small RNAs was more pronounced later in the season when symptoms developed in infected grapevines. Most differentially expressed small RNAs were associated with biotic stress. Our study also exposes the less-studied role of hormones in disease development and shows that hormonal balance was already perturbed before symptoms development in infected grapevines. Analysis at the level of communities of genes and mRNA-microRNA interaction networks revealed several new genes (e.g., expansins and cryptdin) that have not been associated with phytoplasma pathogenicity previously. These novel actors may present a new reference framework for research and diagnostics of phytoplasma diseases of grapevine.
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4
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Secondary Metabolism and Defense Responses Are Differently Regulated in Two Grapevine Cultivars during Ripening. Int J Mol Sci 2021; 22:ijms22063045. [PMID: 33802641 PMCID: PMC8002507 DOI: 10.3390/ijms22063045] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Revised: 03/12/2021] [Accepted: 03/14/2021] [Indexed: 12/31/2022] Open
Abstract
Vitis vinifera ‘Nebbiolo’ is one of the most important wine grape cultivars used to produce prestigious high-quality wines known throughout the world, such as Barolo and Barbaresco. ‘Nebbiolo’ is a distinctive genotype characterized by medium/high vigor, long vegetative and ripening cycles, and limited berry skin color rich in 3′-hydroxylated anthocyanins. To investigate the molecular basis of these characteristics, ‘Nebbiolo’ berries collected at three different stages of ripening (berry pea size, véraison, and harvest) were compared with V. vinifera ‘Barbera’ berries, which are rich in 3′,5′-hydroxylated anthocyanins, using transcriptomic and analytical approaches. In two consecutive seasons, the two genotypes confirmed their characteristic anthocyanin profiles associated with a different modulation of their transcriptomes during ripening. Secondary metabolism and response to stress were the functional categories that most differentially changed between ‘Nebbiolo’ and ‘Barbera’. The profile rich in 3′-hydroxylated anthocyanins of ‘Nebbiolo’ was likely linked to a transcriptional downregulation of key genes of anthocyanin biosynthesis. In addition, at berry pea size, the defense metabolism was more active in ‘Nebbiolo’ than ‘Barbera’ in absence of biotic attacks. Accordingly, several pathogenesis-related proteins, WRKY transcription factors, and stilbene synthase genes were overexpressed in ‘Nebbiolo’, suggesting an interesting specific regulation of defense pathways in this genotype that deserves to be further explored.
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Tan Y, Li Q, Zhao Y, Wei H, Wang J, Baker CJ, Liu Q, Wei W. Integration of metabolomics and existing omics data reveals new insights into phytoplasma-induced metabolic reprogramming in host plants. PLoS One 2021; 16:e0246203. [PMID: 33539421 PMCID: PMC7861385 DOI: 10.1371/journal.pone.0246203] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Accepted: 01/14/2021] [Indexed: 12/03/2022] Open
Abstract
Phytoplasmas are cell wall-less bacteria that induce abnormal plant growth and various diseases, causing severe economic loss. Phytoplasmas are highly dependent on nutrients imported from host cells because they have lost many genes involved in essential metabolic pathways during reductive evolution. However, metabolic crosstalk between phytoplasmas and host plants and the mechanisms of phytoplasma nutrient acquisition remain poorly understood. In this study, using metabolomics approach, sweet cherry virescence (SCV) phytoplasma-induced metabolite alterations in sweet cherry trees were investigated. A total of 676 metabolites were identified in SCV phytoplasma-infected and mock inoculated leaves, of which 187 metabolites were differentially expressed, with an overwhelming majority belonging to carbohydrates, fatty acids/lipids, amino acids, and flavonoids. Available omics data of interactions between plant and phytoplasma were also deciphered and integrated into the present study. The results demonstrated that phytoplasma infection promoted glycolysis and pentose phosphate pathway activities, which provide energy and nutrients, and facilitate biosynthesis of necessary low-molecular metabolites. Our findings indicated that phytoplasma can induce reprograming of plant metabolism to obtain nutrients for its own replication and infection. The findings from this study provide new insight into interactions of host plants and phytoplasmas from a nutrient acquisition perspective.
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Affiliation(s)
- Yue Tan
- Shandong Institute of Pomology, Taian, China
| | - Qingliang Li
- College of Life Sciences, Zaozhuang University, Zaozhuang, China
| | - Yan Zhao
- United States Department of Agriculture, Molecular Plant Pathology Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, Beltsville, MD, United States of America
| | - Hairong Wei
- Shandong Institute of Pomology, Taian, China
| | - Jiawei Wang
- Shandong Institute of Pomology, Taian, China
| | - Con Jacyn Baker
- United States Department of Agriculture, Molecular Plant Pathology Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, Beltsville, MD, United States of America
| | | | - Wei Wei
- United States Department of Agriculture, Molecular Plant Pathology Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, Beltsville, MD, United States of America
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6
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Bisceglie F, Degola F, Rogolino D, Giannelli G, Orsoni N, Spadola G, Pioli M, Restivo FM, Carcelli M, Pelosi G. Sisters in structure but different in character, some benzaldehyde and cinnamaldehyde derivatives differentially tune Aspergillus flavus secondary metabolism. Sci Rep 2020; 10:17686. [PMID: 33077881 PMCID: PMC7572373 DOI: 10.1038/s41598-020-74574-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Accepted: 09/30/2020] [Indexed: 01/07/2023] Open
Abstract
Great are the expectations for a new generation of antimicrobials, and strenuous are the research efforts towards the exploration of diverse molecular scaffolds-possibly of natural origin - aimed at the synthesis of new compounds against the spread of hazardous fungi. Also high but winding are the paths leading to the definition of biological targets specifically fitting the drug's structural characteristics. The present study is addressed to inspect differential biological behaviours of cinnamaldehyde and benzaldehyde thiosemicarbazone scaffolds, exploiting the secondary metabolism of the mycotoxigenic phytopathogen Aspergillus flavus. Interestingly, owing to modifications on the parent chemical scaffold, some thiosemicarbazones displayed an increased specificity against one or more developmental processes (conidia germination, aflatoxin biosynthesis, sclerotia production) of A. flavus biology. Through the comparative analysis of results, the ligand-based screening strategy here described has allowed us to delineate which modifications are more promising for distinct purposes: from the control of mycotoxins contamination in food and feed commodities, to the environmental management of microbial pathogens, to the investigation of specific structure-activity features for new generation drug discovery.
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Affiliation(s)
- Franco Bisceglie
- grid.10383.390000 0004 1758 0937Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 11/A, 43124 Parma, Italy
| | - Francesca Degola
- grid.10383.390000 0004 1758 0937Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 11/A, 43124 Parma, Italy
| | - Dominga Rogolino
- grid.10383.390000 0004 1758 0937Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 11/A, 43124 Parma, Italy
| | - Gianluigi Giannelli
- grid.10383.390000 0004 1758 0937Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 11/A, 43124 Parma, Italy
| | - Nicolò Orsoni
- grid.10383.390000 0004 1758 0937Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 11/A, 43124 Parma, Italy
| | - Giorgio Spadola
- grid.10383.390000 0004 1758 0937Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 11/A, 43124 Parma, Italy
| | - Marianna Pioli
- grid.10383.390000 0004 1758 0937Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 11/A, 43124 Parma, Italy
| | - Francesco M. Restivo
- grid.10383.390000 0004 1758 0937Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 11/A, 43124 Parma, Italy
| | - Mauro Carcelli
- grid.10383.390000 0004 1758 0937Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 11/A, 43124 Parma, Italy
| | - Giorgio Pelosi
- grid.10383.390000 0004 1758 0937Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 11/A, 43124 Parma, Italy
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7
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Teixeira A, Martins V, Frusciante S, Cruz T, Noronha H, Diretto G, Gerós H. Flavescence Dorée-Derived Leaf Yellowing in Grapevine ( Vitis vinifera L.) Is Associated to a General Repression of Isoprenoid Biosynthetic Pathways. FRONTIERS IN PLANT SCIENCE 2020; 11:896. [PMID: 32625230 PMCID: PMC7311760 DOI: 10.3389/fpls.2020.00896] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2020] [Accepted: 06/02/2020] [Indexed: 05/03/2023]
Abstract
Flavescence dorée (FD), caused by the phytoplasma Candidatus Phytoplasma vitis, is a major threat to vineyard survival in different European grape-growing areas. It has been recorded in French vineyards since the mid-1950s, and rapidly spread to other countries. In Portugal, the phytoplasma was first detected in the DOC region of 'Vinhos Verdes' in 2006, and reached the central region of the country in 2009. The infection causes strong accumulation of carbohydrates and phenolics in the mesophyll cells and a simultaneous decrease of chlorophylls, events accompanied by a down regulation of genes and proteins involved in the dark and light-dependent reactions and stabilization of the photosystem II (PSII). In the present study, to better elucidate the basis of the leaf chlorosis in infected grapevine cv. Loureiro, we studied the isoprenoid transcript-metabolite correlation in leaves from healthy and FD-infected vines. Specifically, targeted metabolome revealed that twenty-one compounds (out of thirty-two), including chlorophylls, carotenoids, quinones and tocopherols, were reduced in response to FD-infection. Thereafter, and consistently with the biochemical data, qPCR analysis highlighted a severe FD-mediated repression in key genes involved in isoprenoid biosynthetic pathways. A more diverse set of changes, on the contrary, was observed in the case of ABA metabolism. Principal component analysis (PCA) of all identified metabolites clearly separated healthy from FD-infected vines, therefore confirming that the infection strongly alters the biosynthesis of grapevine isoprenoids; additionally, forty-four genes and metabolites were identified as the components mostly explaining the variance between healthy and infected samples. Finally, transcript-metabolite network correlation analyses were exploited to display the main hubs of the infection process, which highlighted a strong role of VvCHLG, VvVTE and VvZEP genes and the chlorophylls intermediates aminolevulunic acid and porphobilinogen in response to FD infection. Overall, results indicated that the FD infection impairs the synthesis of isoprenoids, through the repression of key genes involved in the biosynthesis of chlorophylls, carotenoids, quinones and tocopherols.
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Affiliation(s)
- António Teixeira
- Centre of Molecular and Environmental Biology, Department of Biology, University of Minho, Braga, Portugal
- *Correspondence: António Teixeira,
| | - Viviana Martins
- Centre of Molecular and Environmental Biology, Department of Biology, University of Minho, Braga, Portugal
- Centre for the Research and Technology of Agro-Environmental and Biological Sciences, University of Trás-os-Montes and Alto Douro, Vila Real, Portugal
| | - Sarah Frusciante
- Casaccia Research Center, ENEA, Italian National Agency for New Technologies, Energy and Sustainable Economic Development, Rome, Italy
| | - Telmo Cruz
- Centre of Molecular and Environmental Biology, Department of Biology, University of Minho, Braga, Portugal
| | - Henrique Noronha
- Centre of Molecular and Environmental Biology, Department of Biology, University of Minho, Braga, Portugal
- Centre for the Research and Technology of Agro-Environmental and Biological Sciences, University of Trás-os-Montes and Alto Douro, Vila Real, Portugal
| | - Gianfranco Diretto
- Casaccia Research Center, ENEA, Italian National Agency for New Technologies, Energy and Sustainable Economic Development, Rome, Italy
| | - Hernâni Gerós
- Centre of Molecular and Environmental Biology, Department of Biology, University of Minho, Braga, Portugal
- Centre for the Research and Technology of Agro-Environmental and Biological Sciences, University of Trás-os-Montes and Alto Douro, Vila Real, Portugal
- Centre of Biological Engineering (CEB), Department of Biological Engineering, University of Minho, Braga, Portugal
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Sundyreva M, Rebrov A, Mishko A. Influence of sucrose concentration in the culture medium on the condition of the photosynthetic apparatus of grapes cultured in vitro. BIO WEB OF CONFERENCES 2020. [DOI: 10.1051/bioconf/20202504003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
An influence of different sucrose concentrations in the culture media on the photosynthetic parameters, photosynthetic apparatus related genes expression, oxidative processes and acclimation of grape plants cultured in vitro was examined in this article. An increase of the sucrose concentration in the culture media resulted in a reduced expression of several photosynthetic genes. The most effective functioning of the photosynthetic apparatus was discovered by a decreased amount of surcose in culture media. An increase of the sucrose concentration in the culture media disrupts pigments synthesis, particularly carotenoids, which can be a cause of the secondary oxidative stress formation and grape plants growth reduction during acclimation.
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9
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Bertazzon N, Bagnaresi P, Forte V, Mazzucotelli E, Filippin L, Guerra D, Zechini A, Cattivelli L, Angelini E. Grapevine comparative early transcriptomic profiling suggests that Flavescence dorée phytoplasma represses plant responses induced by vector feeding in susceptible varieties. BMC Genomics 2019; 20:526. [PMID: 31242866 PMCID: PMC6595628 DOI: 10.1186/s12864-019-5908-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Accepted: 06/17/2019] [Indexed: 01/18/2023] Open
Abstract
Background Flavescence dorée is the most serious grapevine yellows disease in Europe. It is caused by phytoplasmas which are transmitted from grapevine to grapevine by the leafhopper Scaphoideus titanus. Differences in susceptibility among grapevine varieties suggest the existence of specific genetic features associated with resistance to the phytoplasma and/or possibly with its vector. In this work, RNA-Seq was used to compare early transcriptional changes occurring during the three-trophic interaction between the phytoplasma, its vector and the grapevine, represented by two different cultivars, one very susceptible to the disease and the other scarcely susceptible. Results The comparative analysis of the constitutive transcriptomic profiles suggests the existence of passive defense strategies against the insect and/or the phytoplasma in the scarcely-susceptible cultivar. Moreover, the attack by the infective vector on the scarcely-susceptible variety prompted immediate and substantial transcriptomic changes that led to the rapid erection of further active defenses. On the other hand, in the most susceptible variety the response was delayed and mainly consisted of the induction of phytoalexin synthesis. Surprisingly, the jasmonic acid- and ethylene-mediated defense reactions, activated by the susceptible cultivar following FD-free insect feeding, were not detected in the presence of the phytoplasma-infected vector. Conclusions The comparison of the transcriptomic response in two grapevine varieties with different levels of susceptibility to Flavescence dorèe highlighted both passive and active defense mechanisms against the vector and/or the pathogen in the scarcely-susceptible variety, as well as the capacity of the phytoplasmas to repress the defense reaction against the insect in the susceptible variety. Electronic supplementary material The online version of this article (10.1186/s12864-019-5908-6) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Nadia Bertazzon
- CREA Research Centre for Viticulture and Enology, 31015, Conegliano (TV), Italy.
| | - Paolo Bagnaresi
- CREA Research Centre for Genomics and Bioinformatics, 29017, Fiorenzuola d'Arda (PC), Italy
| | - Vally Forte
- CREA Research Centre for Viticulture and Enology, 31015, Conegliano (TV), Italy
| | | | - Luisa Filippin
- CREA Research Centre for Viticulture and Enology, 31015, Conegliano (TV), Italy
| | - Davide Guerra
- CREA Research Centre for Genomics and Bioinformatics, 29017, Fiorenzuola d'Arda (PC), Italy
| | - Antonella Zechini
- CREA Research Centre for Genomics and Bioinformatics, 29017, Fiorenzuola d'Arda (PC), Italy
| | - Luigi Cattivelli
- CREA Research Centre for Genomics and Bioinformatics, 29017, Fiorenzuola d'Arda (PC), Italy
| | - Elisa Angelini
- CREA Research Centre for Viticulture and Enology, 31015, Conegliano (TV), Italy
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10
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Dermastia M. Plant Hormones in Phytoplasma Infected Plants. FRONTIERS IN PLANT SCIENCE 2019; 10:477. [PMID: 31057582 PMCID: PMC6478762 DOI: 10.3389/fpls.2019.00477] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2019] [Accepted: 03/28/2019] [Indexed: 05/21/2023]
Abstract
Phytoplasmas are bacterial plant pathogens that need a plant host and an insect vector for their spread and survival. In plants, the physiological responses that phytoplasmas trigger result in symptom development through effects on hormonal, nutritional, and stress signaling pathways, and the interactions between these. In this review, recent advances on the involvement of plant hormones together with their known and deduced roles in plants infected with phytoplasmas are discussed. Several studies have directly, or in many cases indirectly, addressed plant hormone systems in phytoplasma-infected plants. These have provided accumulating evidence that phytoplasmas extensively affect plant hormone pathways. Phytoplasmas thus, with disturbing complex plant hormone networks, suppress plant immunity and modify plant structure, while optimizing their nutrient acquisition and facilitating their colonization of the plants, and their dissemination among plants by their insect vectors.
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Affiliation(s)
- Marina Dermastia
- Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia
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11
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Abstract
Phytoplasmas are among the most recently discovered plant pathogens. They are wall-less prokaryotes restricted to phloem tissue, associated with diseases affecting several hundred plant species. The impact of phytoplasma diseases on agriculture is impressive and, at the present day, no effective curative strategy has been developed. The availability of rapid and sensitive techniques for phytoplasma detection as well as the possibility to study their relationship with the host plants is a prerequisite for the management of phytoplasma-associated diseases.
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Affiliation(s)
- L Pagliari
- Department of Agricultural, Food, Environmental and Animal Sciences, University of Udine, Udine, Italy
| | - R Musetti
- Department of Agricultural, Food, Environmental and Animal Sciences, University of Udine, Udine, Italy.
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12
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Chitarra W, Cuozzo D, Ferrandino A, Secchi F, Palmano S, Perrone I, Boccacci P, Pagliarani C, Gribaudo I, Mannini F, Gambino G. Dissecting interplays between Vitis vinifera L. and grapevine virus B (GVB) under field conditions. MOLECULAR PLANT PATHOLOGY 2018; 19:2651-2666. [PMID: 30055094 PMCID: PMC6638183 DOI: 10.1111/mpp.12735] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Plant virus infections are often difficult to characterize as they result from a complex molecular and physiological interplay between a pathogen and its host. In this study, the impact of the phloem-limited grapevine virus B (GVB) on the Vitis vinifera L. wine-red cultivar Albarossa was analysed under field conditions. Trials were carried out over two growing seasons by combining agronomic, molecular, biochemical and ecophysiological approaches. The data showed that GVB did not induce macroscopic symptoms on 'Albarossa', but affected the ecophysiological performances of vines in terms of assimilation rates, particularly at the end of the season, without compromising yield and vigour. In GVB-infected plants, the accumulation of soluble carbohydrates in the leaves and transcriptional changes in sugar- and photosynthetic-related genes seemed to trigger defence responses similar to those observed in plants infected by phytoplasmas, although to a lesser extent. In addition, GVB activated berry secondary metabolism. In particular, total anthocyanins and their acetylated forms accumulated at higher levels in GVB-infected than in GVB-free berries, consistent with the expression profiles of the related biosynthetic genes. These results contribute to improve our understanding of the multifaceted grapevine-virus interaction.
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Affiliation(s)
- Walter Chitarra
- Research Centre for Viticulture and EnologyCouncil for Agricultural Research and Economics (CREA‐VE)Via XVIII Aprile 26Conegliano31015Italy
- Institute for Sustainable Plant ProtectionNational Research Council (IPSP‐CNR)Strada delle Cacce 73Torino10135Italy
| | - Danila Cuozzo
- Institute for Sustainable Plant ProtectionNational Research Council (IPSP‐CNR)Strada delle Cacce 73Torino10135Italy
- Department of Agricultural, Forest, and Food SciencesUniversity of Turin (DISAFA)Largo Paolo Braccini 2Grugliasco10095Italy
| | - Alessandra Ferrandino
- Department of Agricultural, Forest, and Food SciencesUniversity of Turin (DISAFA)Largo Paolo Braccini 2Grugliasco10095Italy
| | - Francesca Secchi
- Department of Agricultural, Forest, and Food SciencesUniversity of Turin (DISAFA)Largo Paolo Braccini 2Grugliasco10095Italy
| | - Sabrina Palmano
- Institute for Sustainable Plant ProtectionNational Research Council (IPSP‐CNR)Strada delle Cacce 73Torino10135Italy
| | - Irene Perrone
- Institute for Sustainable Plant ProtectionNational Research Council (IPSP‐CNR)Strada delle Cacce 73Torino10135Italy
| | - Paolo Boccacci
- Institute for Sustainable Plant ProtectionNational Research Council (IPSP‐CNR)Strada delle Cacce 73Torino10135Italy
| | - Chiara Pagliarani
- Institute for Sustainable Plant ProtectionNational Research Council (IPSP‐CNR)Strada delle Cacce 73Torino10135Italy
| | - Ivana Gribaudo
- Institute for Sustainable Plant ProtectionNational Research Council (IPSP‐CNR)Strada delle Cacce 73Torino10135Italy
| | - Franco Mannini
- Institute for Sustainable Plant ProtectionNational Research Council (IPSP‐CNR)Strada delle Cacce 73Torino10135Italy
| | - Giorgio Gambino
- Institute for Sustainable Plant ProtectionNational Research Council (IPSP‐CNR)Strada delle Cacce 73Torino10135Italy
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Gai YP, Yuan SS, Liu ZY, Zhao HN, Liu Q, Qin RL, Fang LJ, Ji XL. Integrated Phloem Sap mRNA and Protein Expression Analysis Reveals Phytoplasma-infection Responses in Mulberry. Mol Cell Proteomics 2018; 17:1702-1719. [PMID: 29848783 PMCID: PMC6126391 DOI: 10.1074/mcp.ra118.000670] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2018] [Revised: 05/25/2018] [Indexed: 11/06/2022] Open
Abstract
To gain insight into the response of mulberry to phytoplasma-infection, the expression profiles of mRNAs and proteins in mulberry phloem sap were examined. A total of 955 unigenes and 136 proteins were found to be differentially expressed between the healthy and infected phloem sap. These differentially expressed mRNAs and proteins are involved in signaling, hormone metabolism, stress responses, etc. Interestingly, we found that both the mRNA and protein levels of the major latex protein-like 329 (MuMLPL329) gene were increased in the infected phloem saps. Expression of the MuMLPL329 gene was induced by pathogen inoculation and was responsive to jasmonic acid. Ectopic expression of MuMLPL329 in Arabidopsis enhances transgenic plant resistance to Botrytis cinerea, Pseudomonas syringae pv tomato DC3000 (Pst. DC3000) and phytoplasma. Further analysis revealed that MuMLPL329 can enhance the expression of some defense genes and might be involved in altering flavonoid content resulting in increased resistance of plants to pathogen infection. Finally, the roles of the differentially expressed mRNAs and proteins and the potential molecular mechanisms of their changes were discussed. It was likely that the phytoplasma-responsive mRNAs and proteins in the phloem saps were involved in multiple pathways of mulberry responses to phytoplasma-infection, and their changes may be partially responsible for some symptoms in the phytoplasma infected plants.
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Affiliation(s)
- Ying-Ping Gai
- From the ‡State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
| | - Shuo-Shuo Yuan
- §College of Forestry, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
| | - Zhao-Yang Liu
- §College of Forestry, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
| | - Huai-Ning Zhao
- From the ‡State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
| | - Qi Liu
- From the ‡State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
| | - Rong-Li Qin
- From the ‡State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
| | - Li-Jing Fang
- §College of Forestry, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
| | - Xian-Ling Ji
- §College of Forestry, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
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14
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Ullah A, Hussain A, Shaban M, Khan AH, Alariqi M, Gul S, Jun Z, Lin S, Li J, Jin S, Munis MFH. Osmotin: A plant defense tool against biotic and abiotic stresses. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2018; 123:149-159. [PMID: 29245030 DOI: 10.1016/j.plaphy.2017.12.012] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2017] [Revised: 12/05/2017] [Accepted: 12/06/2017] [Indexed: 05/18/2023]
Abstract
Plants are prone to a number of pathogens and abiotic stresses that cause various disorders. However, plants possess a defense mechanism to cope with these stresses. The osmotin protein belongs to the PR-5 family of Pathogenesis-related (PR) proteins, which are produced in response to diseases caused by various biotic and abiotic stresses. Osmotin uses a signal transduction pathway to inhibit the activity of defensive cell wall barriers and increases its own cytotoxic efficiency. However, in response to cytotoxic effects, this pathway stimulates a mitogen-activated protein kinase (MAPK) cascade that triggers changes in the cell wall and enables osmotin's entrance into the plasma membrane. This mechanism involves cell wall binding and membrane perturbation, although the complete mechanism of osmotin activity has not been fully elucidated. Osmotin possesses an acidic cleft that is responsible for communication with its receptor in the plasma membrane of fungi. Osmotin is also involved in the initiation of apoptosis and programmed cell death, whereas its overexpression causes the accumulation of proline in transgenic plants. A higher concentration of osmotin can cause the lysis of hyphae tips. This review highlights the role of osmotin protein in the plant defense mechanism and its mode of action against numerous pathogens in wild and transgenic plants.
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Affiliation(s)
- Abid Ullah
- College of Plant Science and Technology, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Amjad Hussain
- College of Plant Science and Technology, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Muhammad Shaban
- College of Plant Science and Technology, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Aamir Hamid Khan
- College of Plant Science and Technology, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Muna Alariqi
- College of Plant Science and Technology, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Summia Gul
- Department of Biology, Institute of Microbiology, Heinrich Heine University Düsseldorf, Germany
| | - Zhang Jun
- College of Plant Science and Technology, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Sun Lin
- College of Plant Science and Technology, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Jianying Li
- College of Plant Science and Technology, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Shuangxia Jin
- College of Plant Science and Technology, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China.
| | - Muhammad Farooq Hussain Munis
- Department of Plant Sciences, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan; University of California, Department of Plant Pathology, 354 Hutchison Hall, One Shields Ave, Davis, CA 95616-8680, USA.
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15
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Gai YP, Zhao HN, Zhao YN, Zhu BS, Yuan SS, Li S, Guo FY, Ji XL. MiRNA-seq-based profiles of miRNAs in mulberry phloem sap provide insight into the pathogenic mechanisms of mulberry yellow dwarf disease. Sci Rep 2018; 8:812. [PMID: 29339758 PMCID: PMC5770470 DOI: 10.1038/s41598-018-19210-7] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2017] [Accepted: 12/20/2017] [Indexed: 11/09/2022] Open
Abstract
A wide range of miRNAs have been identified as phloem-mobile molecules that play important roles in coordinating plant development and physiology. Phytoplasmas are associated with hundreds of plant diseases, and the pathogenesis involved in the interactions between phytoplasmas and plants is still poorly understood. To analyse the molecular mechanisms of phytoplasma pathogenicity, the miRNAs profiles in mulberry phloem saps were examined in response to phytoplasma infection. A total of 86 conserved miRNAs and 19 novel miRNAs were identified, and 30 conserved miRNAs and 13 novel miRNAs were differentially expressed upon infection with phytoplasmas. The target genes of the differentially expressed miRNAs are involved in diverse signalling pathways showing the complex interactions between mulberry and phytoplasma. Interestingly, we found that mul-miR482a-5p was up-regulated in the infected phloem saps, and grafting experiments showed that it can be transported from scions to rootstock. Based on the results, the complexity and roles of the miRNAs in phloem sap and the potential molecular mechanisms of their changes were discussed. It is likely that the phytoplasma-responsive miRNAs in the phloem sap modulate multiple pathways and work cooperatively in response to phytoplasma infection, and their expression changes may be responsible for some symptoms in the infected plants.
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Affiliation(s)
- Ying-Ping Gai
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
| | - Huai-Ning Zhao
- College of Forestry, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
| | - Ya-Nan Zhao
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
| | - Bing-Sen Zhu
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
| | - Shuo-Shuo Yuan
- College of Forestry, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
| | - Shuo Li
- College of Forestry, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
| | - Fang-Yue Guo
- College of Forestry, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China
| | - Xian-Ling Ji
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China. .,College of Forestry, Shandong Agricultural University, Taian, Shandong, 271018, People's Republic of China.
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16
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Comparative Proteomic Analysis of Paulownia fortunei Response to Phytoplasma Infection with Dimethyl Sulfate Treatment. Int J Genomics 2017; 2017:6542075. [PMID: 29038787 PMCID: PMC5605944 DOI: 10.1155/2017/6542075] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2017] [Revised: 08/01/2017] [Accepted: 08/09/2017] [Indexed: 12/02/2022] Open
Abstract
Paulownia fortunei is a widely cultivated economic forest tree species that is susceptible to infection with phytoplasma, resulting in Paulownia witches' broom (PaWB) disease. Diseased P. fortunei is characterized by stunted growth, witches' broom, shortened internodes, and etiolated and smaller leaves. To understand the molecular mechanism of its pathogenesis, we applied isobaric tags for relative and absolute quantitation (iTRAQ) and liquid chromatography coupled with tandem mass spectrometry approaches to study changes in the proteomes of healthy P. fortunei, PaWB-infected P. fortunei, and PaWB-infected P. fortunei treated with 15 mg·L−1 or 75 mg·L−1 dimethyl sulfate. We identified 2969 proteins and 104 and 32 differentially abundant proteins that were phytoplasma infection responsive and dimethyl sulfate responsive, respectively. Based on our analysis of the different proteomes, 27 PaWB-related proteins were identified. The protein-protein interactions of these 27 proteins were analyzed and classified into four groups (photosynthesis-related, energy-related, ribosome-related, and individual proteins). These PaWB-related proteins may help in developing a deeper understanding of how PaWB affects the morphological characteristics of P. fortunei and further establish the mechanisms involved in the response of P. fortunei to phytoplasma.
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17
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Snyman MC, Solofoharivelo MC, Souza-Richards R, Stephan D, Murray S, Burger JT. The use of high-throughput small RNA sequencing reveals differentially expressed microRNAs in response to aster yellows phytoplasma-infection in Vitis vinifera cv. 'Chardonnay'. PLoS One 2017; 12:e0182629. [PMID: 28813447 PMCID: PMC5558978 DOI: 10.1371/journal.pone.0182629] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Accepted: 07/22/2017] [Indexed: 11/19/2022] Open
Abstract
Phytoplasmas are cell wall-less plant pathogenic bacteria responsible for major crop losses throughout the world. In grapevine they cause grapevine yellows, a detrimental disease associated with a variety of symptoms. The high economic impact of this disease has sparked considerable interest among researchers to understand molecular mechanisms related to pathogenesis. Increasing evidence exist that a class of small non-coding endogenous RNAs, known as microRNAs (miRNAs), play an important role in post-transcriptional gene regulation during plant development and responses to biotic and abiotic stresses. Thus, we aimed to dissect complex high-throughput small RNA sequencing data for the genome-wide identification of known and novel differentially expressed miRNAs, using read libraries constructed from healthy and phytoplasma-infected Chardonnay leaf material. Furthermore, we utilised computational resources to predict putative miRNA targets to explore the involvement of possible pathogen response pathways. We identified multiple known miRNA sequence variants (isomiRs), likely generated through post-transcriptional modifications. Sequences of 13 known, canonical miRNAs were shown to be differentially expressed. A total of 175 novel miRNA precursor sequences, each derived from a unique genomic location, were predicted, of which 23 were differentially expressed. A homology search revealed that some of these novel miRNAs shared high sequence similarity with conserved miRNAs from other plant species, as well as known grapevine miRNAs. The relative expression of randomly selected known and novel miRNAs was determined with real-time RT-qPCR analysis, thereby validating the trend of expression seen in the normalised small RNA sequencing read count data. Among the putative miRNA targets, we identified genes involved in plant morphology, hormone signalling, nutrient homeostasis, as well as plant stress. Our results may assist in understanding the role that miRNA pathways play during plant pathogenesis, and may be crucial in understanding disease symptom development in aster yellows phytoplasma-infected grapevines.
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Affiliation(s)
- Marius C. Snyman
- The Vitis Laboratory, Department of Genetics, Stellenbosch University, Stellenbosch, South Africa
| | | | - Rose Souza-Richards
- The Vitis Laboratory, Department of Genetics, Stellenbosch University, Stellenbosch, South Africa
| | - Dirk Stephan
- The Vitis Laboratory, Department of Genetics, Stellenbosch University, Stellenbosch, South Africa
| | - Shane Murray
- Centre for Proteomic and Genomic Research, Observatory, Cape Town, South Africa
| | - Johan T. Burger
- The Vitis Laboratory, Department of Genetics, Stellenbosch University, Stellenbosch, South Africa
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18
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Tan BC, Lim YS, Lau SE. Proteomics in commercial crops: An overview. J Proteomics 2017; 169:176-188. [PMID: 28546092 DOI: 10.1016/j.jprot.2017.05.018] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2016] [Revised: 04/21/2017] [Accepted: 05/19/2017] [Indexed: 02/06/2023]
Abstract
Proteomics is a rapidly growing area of biological research that is positively affecting plant science. Recent advances in proteomic technology, such as mass spectrometry, can now identify a broad range of proteins and monitor their modulation during plant growth and development, as well as during responses to abiotic and biotic stresses. In this review, we highlight recent proteomic studies of commercial crops and discuss the advances in understanding of the proteomes of these crops. We anticipate that proteomic-based research will continue to expand and contribute to crop improvement. SIGNIFICANCE Plant proteomics study is a rapidly growing area of biological research that is positively impacting plant science. With the recent advances in new technologies, proteomics not only allows us to comprehensively analyses crop proteins, but also help us to understand the functions of the genes. In this review, we highlighted recent proteomic studies in commercial crops and updated the advances in our understanding of the proteomes of these crops. We believe that proteomic-based research will continue to grow and contribute to the improvement of crops.
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Affiliation(s)
- Boon Chin Tan
- Centre for Research in Biotechnology for Agriculture, University of Malaya, Lembah Pantai, 50603 Kuala Lumpur, Malaysia.
| | - Yin Sze Lim
- School of Biosciences, Faculty of Science, University of Nottingham Malaysia Campus, Jalan Broga, 43500 Semenyih, Selangor, Malaysia
| | - Su-Ee Lau
- Centre for Research in Biotechnology for Agriculture, University of Malaya, Lembah Pantai, 50603 Kuala Lumpur, Malaysia
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19
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Maggi F, Bosco D, Galetto L, Palmano S, Marzachì C. Space-Time Point Pattern Analysis of Flavescence Dorée Epidemic in a Grapevine Field: Disease Progression and Recovery. FRONTIERS IN PLANT SCIENCE 2017; 7:1987. [PMID: 28111581 PMCID: PMC5216681 DOI: 10.3389/fpls.2016.01987] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2016] [Accepted: 12/15/2016] [Indexed: 05/10/2023]
Abstract
Analyses of space-time statistical features of a flavescence dorée (FD) epidemic in Vitis vinifera plants are presented. FD spread was surveyed from 2011 to 2015 in a vineyard of 17,500 m2 surface area in the Piemonte region, Italy; count and position of symptomatic plants were used to test the hypothesis of epidemic Complete Spatial Randomness and isotropicity in the space-time static (year-by-year) point pattern measure. Space-time dynamic (year-to-year) point pattern analyses were applied to newly infected and recovered plants to highlight statistics of FD progression and regression over time. Results highlighted point patterns ranging from disperse (at small scales) to aggregated (at large scales) over the years, suggesting that the FD epidemic is characterized by multiscale properties that may depend on infection incidence, vector population, and flight behavior. Dynamic analyses showed moderate preferential progression and regression along rows. Nearly uniform distributions of direction and negative exponential distributions of distance of newly symptomatic and recovered plants relative to existing symptomatic plants highlighted features of vector mobility similar to Brownian motion. These evidences indicate that space-time epidemics modeling should include environmental setting (e.g., vineyard geometry and topography) to capture anisotropicity as well as statistical features of vector flight behavior, plant recovery and susceptibility, and plant mortality.
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Affiliation(s)
- Federico Maggi
- School of Civil Engineering, The University of Sydney, SydneyNSW, Australia
| | - Domenico Bosco
- Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle RicercheTurin, Italy
- Dipartimento di Scienze Agrarie, Forestali e Alimentari, Entomologia, Università degli Studi di TorinoTurin, Italy
| | - Luciana Galetto
- Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle RicercheTurin, Italy
| | - Sabrina Palmano
- Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle RicercheTurin, Italy
| | - Cristina Marzachì
- Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle RicercheTurin, Italy
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20
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Eveillard S, Jollard C, Labroussaa F, Khalil D, Perrin M, Desqué D, Salar P, Razan F, Hévin C, Bordenave L, Foissac X, Masson JE, Malembic-Maher S. Contrasting Susceptibilities to Flavescence Dorée in Vitis vinifera, Rootstocks and Wild Vitis Species. FRONTIERS IN PLANT SCIENCE 2016; 7:1762. [PMID: 27965681 PMCID: PMC5126068 DOI: 10.3389/fpls.2016.01762] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2016] [Accepted: 11/08/2016] [Indexed: 05/20/2023]
Abstract
Flavescence dorée (FD) is a quarantine disease of grapevine, involving interactions between the plants, leafhopper vectors, and FD phytoplasma. Characterizing the susceptibility of vine varieties could limit disease propagation. After extensive surveys in vineyards, we showed that Cabernet Sauvignon (CS) is highly susceptible, with a high proportion of symptomatic branches and phytoplasma titers, in contrast to Merlot (M). Localized insect transmissions and grafting showed that phytoplasma circulate in the whole plant in the CS cultivar, but in M they are restricted to the transmission point. Insect-mediated transmission under high confinement mimicking natural conditions confirmed these phenotypes and allowed the classification of 28 Vitis accessions into three distinct categories, according to the percentage of infected plants and their phytoplasma titers. Reduced symptoms, low phytoplasma titers, and low percentages of infected plants were found to be associated in the Vitis vinifera cultivars tested. Interestingly, the low susceptibility of M was observed for one of its parents, i.e., Magdeleine Noire des Charentes. Rootstocks and their Vitis parents, although having high percentages of infected plants and intermediate to high phytoplasma titers, shared a symptomless response. This is troubling, because rootstocks can constitute a silent reservoir of contamination in mother plants or when they grow wild nearby vineyards. Altogether, data suggest distribution of genetic traits within the Vitis genus involved in insect-mediated phytoplasma transmission, multiplication, circulation, and symptom development.
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Affiliation(s)
- Sandrine Eveillard
- UMR 1332 Biologie du Fruit et Pathologie, Institut National de la Recherche Agronomique, Université de Bordeaux Villenave-d'Ornon, France
| | - Camille Jollard
- UMR 1332 Biologie du Fruit et Pathologie, Institut National de la Recherche Agronomique, Université de Bordeaux Villenave-d'Ornon, France
| | - Fabien Labroussaa
- UMR 1332 Biologie du Fruit et Pathologie, Institut National de la Recherche Agronomique, Université de Bordeaux Villenave-d'Ornon, France
| | - Dima Khalil
- UMR 1332 Biologie du Fruit et Pathologie, Institut National de la Recherche Agronomique, Université de Bordeaux Villenave-d'Ornon, France
| | - Mireille Perrin
- UMR 1131 Santé de la Vigne et Qualité du Vin, Institut National de la Recherche Agronomique, Université de Strasbourg Colmar, France
| | - Delphine Desqué
- UMR 1332 Biologie du Fruit et Pathologie, Institut National de la Recherche Agronomique, Université de Bordeaux Villenave-d'Ornon, France
| | - Pascal Salar
- UMR 1332 Biologie du Fruit et Pathologie, Institut National de la Recherche Agronomique, Université de Bordeaux Villenave-d'Ornon, France
| | - Frédérique Razan
- UMR 1332 Biologie du Fruit et Pathologie, Institut National de la Recherche Agronomique, Université de Bordeaux Villenave-d'Ornon, France
| | - Cyril Hévin
- UMR 1287 Ecophysiologie et Génomique Fonctionnelle de la Vigne, Institut National de la Recherche Agronomique, Université de Bordeaux Villenave-d'Ornon, France
| | - Louis Bordenave
- UMR 1287 Ecophysiologie et Génomique Fonctionnelle de la Vigne, Institut National de la Recherche Agronomique, Université de Bordeaux Villenave-d'Ornon, France
| | - Xavier Foissac
- UMR 1332 Biologie du Fruit et Pathologie, Institut National de la Recherche Agronomique, Université de Bordeaux Villenave-d'Ornon, France
| | - Jean E Masson
- UMR 1131 Santé de la Vigne et Qualité du Vin, Institut National de la Recherche Agronomique, Université de Strasbourg Colmar, France
| | - Sylvie Malembic-Maher
- UMR 1332 Biologie du Fruit et Pathologie, Institut National de la Recherche Agronomique, Université de Bordeaux Villenave-d'Ornon, France
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21
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Galetto L, Miliordos DE, Pegoraro M, Sacco D, Veratti F, Marzachì C, Bosco D. Acquisition of Flavescence Dorée Phytoplasma by Scaphoideus titanus Ball from Different Grapevine Varieties. Int J Mol Sci 2016; 17:E1563. [PMID: 27649162 PMCID: PMC5037832 DOI: 10.3390/ijms17091563] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2016] [Revised: 08/24/2016] [Accepted: 09/07/2016] [Indexed: 01/09/2023] Open
Abstract
Flavescence dorée (FD) is a threat for wine production in the vineyard landscape of Piemonte, Langhe-Roero and Monferrato, Italy. Spread of the disease is dependent on complex interactions between insect, plant and phytoplasma. In the Piemonte region, wine production is based on local cultivars. The role of six local grapevine varieties as a source of inoculum for the vector Scaphoideus titanus was investigated. FD phytoplasma (FDP) load was compared among red and white varieties with different susceptibility to FD. Laboratory-reared healthy S. titanus nymphs were caged for acquisition on infected plants to measure phytoplasma acquisition efficiency following feeding on different cultivars. FDP load for Arneis was significantly lower than for other varieties. Acquisition efficiency depended on grapevine variety and on FDP load in the source plants, and there was a positive interaction for acquisition between variety and phytoplasma load. S. titanus acquired FDP with high efficiency from the most susceptible varieties, suggesting that disease diffusion correlates more with vector acquisition efficiency than with FDP load in source grapevines. In conclusion, although acquisition efficiency depends on grapevine variety and on FDP load in the plant, even varieties supporting low FDP multiplication can be highly susceptible and good sources for vector infection, while poorly susceptible varieties may host high phytoplasma loads.
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Affiliation(s)
- Luciana Galetto
- Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle Ricerche (CNR), Strada delle Cacce 73, 10135 Turin, Italy.
| | - Dimitrios E Miliordos
- Dipartimento di Scienze Agrarie, Forestali e Agroalimentari (DISAFA), Università degli Studi di Torino, Largo Paolo Braccini 2, 10095 Grugliasco, Italy.
| | - Mattia Pegoraro
- Dipartimento di Scienze Agrarie, Forestali e Agroalimentari (DISAFA), Università degli Studi di Torino, Largo Paolo Braccini 2, 10095 Grugliasco, Italy.
| | - Dario Sacco
- Dipartimento di Scienze Agrarie, Forestali e Agroalimentari (DISAFA), Università degli Studi di Torino, Largo Paolo Braccini 2, 10095 Grugliasco, Italy.
| | - Flavio Veratti
- Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle Ricerche (CNR), Strada delle Cacce 73, 10135 Turin, Italy.
| | - Cristina Marzachì
- Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle Ricerche (CNR), Strada delle Cacce 73, 10135 Turin, Italy.
| | - Domenico Bosco
- Dipartimento di Scienze Agrarie, Forestali e Agroalimentari (DISAFA), Università degli Studi di Torino, Largo Paolo Braccini 2, 10095 Grugliasco, Italy.
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22
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Prezelj N, Covington E, Roitsch T, Gruden K, Fragner L, Weckwerth W, Chersicola M, Vodopivec M, Dermastia M. Metabolic Consequences of Infection of Grapevine (Vitis vinifera L.) cv. "Modra frankinja" with Flavescence Dorée Phytoplasma. FRONTIERS IN PLANT SCIENCE 2016; 7:711. [PMID: 27242887 PMCID: PMC4876132 DOI: 10.3389/fpls.2016.00711] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2016] [Accepted: 05/09/2016] [Indexed: 05/18/2023]
Abstract
Flavescence dorée, caused by the quarantine phytoplasma FDp, represents the most devastating of the grapevine yellows diseases in Europe. In an integrated study we have explored the FDp-grapevine interaction in infected grapevines of cv. "Modra frankinja" under natural conditions in the vineyard. In FDp-infected leaf vein-enriched tissues, the seasonal transcriptional profiles of 14 genes selected from various metabolic pathways showed an FDp-specific plant response compared to other grapevine yellows and uncovered a new association of the SWEET17a vacuolar transporter of fructose with pathogens. Non-targeted metabolome analysis from leaf vein-enriched tissues identified 22 significantly changed compounds with increased levels during infection. Several metabolites corroborated the gene expression study. Detailed investigation of the dynamics of carbohydrate metabolism revealed significant accumulation of sucrose and starch in the mesophyll of FDp-infected leaves, as well as significant up-regulation of genes involved in their biosynthesis. In addition, infected leaves had high activities of ADP-glucose pyrophosphorylase and, more significantly, sucrose synthase. The data support the conclusion that FDp infection inhibits phloem transport, resulting in accumulation of carbohydrates and secondary metabolites that provoke a source-sink transition and defense response status.
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Affiliation(s)
- Nina Prezelj
- Department of Biotechnology and Systems Biology, National Institute of BiologyLjubljana, Slovenia
| | - Elizabeth Covington
- Department of Biotechnology and Systems Biology, National Institute of BiologyLjubljana, Slovenia
| | - Thomas Roitsch
- Department of Plant and Environmental Sciences, Copenhagen Plant Science Centre, University of CopenhagenTaastrup, Denmark
- Global Change Research Centre, Czech Globe AS CR, v.v.i.Drásov, Czech Republic
| | - Kristina Gruden
- Department of Biotechnology and Systems Biology, National Institute of BiologyLjubljana, Slovenia
| | - Lena Fragner
- Department of Ecogenomics and Systems Biology, Faculty of Life Sciences, University of ViennaVienna, Austria
| | - Wolfram Weckwerth
- Department of Ecogenomics and Systems Biology, Faculty of Life Sciences, University of ViennaVienna, Austria
- Vienna Metabolomics Center (VIME), University of ViennaVienna, Austria
| | - Marko Chersicola
- Department of Biotechnology and Systems Biology, National Institute of BiologyLjubljana, Slovenia
- Jožef Stefan International Postgraduate SchoolLjubljana, Slovenia
| | - Maja Vodopivec
- Department of Biotechnology and Systems Biology, National Institute of BiologyLjubljana, Slovenia
| | - Marina Dermastia
- Department of Biotechnology and Systems Biology, National Institute of BiologyLjubljana, Slovenia
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23
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Anil Kumar S, Hima Kumari P, Shravan Kumar G, Mohanalatha C, Kavi Kishor PB. Osmotin: a plant sentinel and a possible agonist of mammalian adiponectin. FRONTIERS IN PLANT SCIENCE 2015; 6:163. [PMID: 25852715 PMCID: PMC4360817 DOI: 10.3389/fpls.2015.00163] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2014] [Accepted: 03/01/2015] [Indexed: 05/18/2023]
Abstract
Osmotin is a stress responsive antifungal protein belonging to the pathogenesis-related (PR)-5 family that confers tolerance to both biotic and abiotic stresses in plants. Protective efforts of osmotin in plants range from high temperature to cold and salt to drought. It lyses the plasma membrane of the pathogens. It is widely distributed in fruits and vegetables. It is a differentially expressed and developmentally regulated protein that protects the cells from osmotic stress and invading pathogens as well, by structural or metabolic alterations. During stress conditions, osmotin helps in the accumulation of the osmolyte proline, which quenches reactive oxygen species and free radicals. Osmotin expression results in the accumulation of storage reserves and increases the shelf-life of fruits. It binds to a seven-transmembrane-domain receptor-like protein and induces programmed cell death in Saccharomyces cerevisiae through RAS2/cAMP signaling pathway. Adiponectin, produced in adipose tissues of mammals, is an insulin-sensitizing hormone. Strangely, osmotin acts like the mammalian hormone adiponectin in various in vitro and in vivo models. Adiponectin and osmotin, the two receptor binding proteins do not share sequence similarity at the amino acid level, but interestingly they have a similar structural and functional properties. In experimental mice, adiponectin inhibits endothelial cell proliferation and migration, primary tumor growth, and reduces atherosclerosis. This retrospective work examines the vital role of osmotin in plant defense and as a potential targeted therapeutic drug for humans.
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Affiliation(s)
- S. Anil Kumar
- Department of Genetics, Osmania University, HyderabadIndia
| | - P. Hima Kumari
- Department of Genetics, Osmania University, HyderabadIndia
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24
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Margaria P, Ferrandino A, Caciagli P, Kedrina O, Schubert A, Palmano S. Metabolic and transcript analysis of the flavonoid pathway in diseased and recovered Nebbiolo and Barbera grapevines (Vitis vinifera L.) following infection by Flavescence dorée phytoplasma. PLANT, CELL & ENVIRONMENT 2014; 37:2183-200. [PMID: 24689527 DOI: 10.1111/pce.12332] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2013] [Revised: 03/11/2014] [Accepted: 03/14/2014] [Indexed: 05/05/2023]
Abstract
Flavescence dorée phytoplasma (FDp) infections seriously affect production and survival of grapevine. We analysed the changes in the flavonoid pathway occurring in two red cultivars, the highly susceptible Barbera and the less susceptible Nebbiolo, following FDp infection. A combination of metabolic and transcript analyses was used to quantify flavonoid compounds and expression of a set of genes involved in their biosynthesis. Quantification of anthocyanins, flavonols, proanthocyanidins and related biosynthetic enzymes was performed over the vegetative season, at four time points, on healthy, infected and recovered plants. A strong activation of anthocyanin accumulation was observed in infected Barbera leaves, while the response was less marked in Nebbiolo. Proanthocyanidins also accumulated mainly in infected Barbera leaves, even if basal proanthocyanidin concentration was higher in healthy and recovered Nebbiolo. Biochemical data were supported by transcript analysis: genes of the stem flavonoid pathway and of the anthocyanin and proanthocyanidin branches were expressed at a higher level in infected than in healthy plants, with a different magnitude between the two cultivars. Based on our results, we hypothesize that flavonoid accumulation is a physiological consequence of FD infection without affecting phytoplasma multiplication, although proanthocyanidin accumulation could help repel further infection by the insect vector.
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Affiliation(s)
- Paolo Margaria
- Istituto di Virologia Vegetale, CNR, 10135, Torino, Italy
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25
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Luge T, Kube M, Freiwald A, Meierhofer D, Seemüller E, Sauer S. Transcriptomics assisted proteomic analysis of Nicotiana occidentalis infected by Candidatus Phytoplasma mali strain AT. Proteomics 2014; 14:1882-9. [PMID: 24920314 DOI: 10.1002/pmic.201300551] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2013] [Revised: 05/20/2014] [Accepted: 06/04/2014] [Indexed: 12/11/2022]
Abstract
Phytoplasmas are pathogenic bacteria within the class of Mollicutes, which are associated with more than 1000 plant diseases. In this study, we applied quantitative mass spectrometry to analyse affected pathways of the model plant tobacco (Nicotiana occidentalis) upon Candidatus Phytoplasma mali strain AT infection. Using tissue obtained from leaf midribs, 1466 plant-assigned proteins were identified. For 1019 of these proteins, we could reproducibly quantify the expression changes of infected versus noninfected plants, of which 157 proteins were up- and 173 proteins were downregulated. Differential expression took place in a number of pathways, among others strong downregulation of porphyrin and chlorophyll metabolism and upregulation of alpha-linolenic acid metabolism, which was consistent with observed increased levels of jasmonic acid, a key signal molecule of plant defence. Our data shed light on the molecular networks that are involved in defence of plants against phytoplasma infection and provide a resource for further studies.
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Affiliation(s)
- Toni Luge
- Otto Warburg Laboratory, Max Planck Institute for Molecular Genetics, Berlin, Germany
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26
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Liu GT, Ma L, Duan W, Wang BC, Li JH, Xu HG, Yan XQ, Yan BF, Li SH, Wang LJ. Differential proteomic analysis of grapevine leaves by iTRAQ reveals responses to heat stress and subsequent recovery. BMC PLANT BIOLOGY 2014; 14:110. [PMID: 24774513 PMCID: PMC4108046 DOI: 10.1186/1471-2229-14-110] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2014] [Accepted: 04/17/2014] [Indexed: 05/18/2023]
Abstract
BACKGROUND High temperature is a major environmental factor limiting grape yield and affecting berry quality. Thermotolerance includes the direct response to heat stress and the ability to recover from heat stress. To better understand the mechanism of the thermotolerance of Vitis, we combined a physiological analysis with iTRAQ-based proteomics of Vitis vinifera cv Cabernet Sauvignon, subjected to 43°C for 6 h, and then followed by recovery at 25/18°C. RESULTS High temperature increased the concentrations of TBARS and inhibited electronic transport in photosynthesis apparatus, indicating that grape leaves were damaged by heat stress. However, these physiological changes rapidly returned to control levels during the subsequent recovery phase from heat stress. One hundred and seventy-four proteins were differentially expressed under heat stress and/or during the recovery phase, in comparison to unstressed controls, respectively. Stress and recovery conditions shared 42 proteins, while 113 and 103 proteins were respectively identified under heat stress and recovery conditions alone. Based on MapMan ontology, functional categories for these dysregulated proteins included mainly photosynthesis (about 20%), proteins (13%), and stress (8%). The subcellular localization using TargetP showed most proteins were located in the chloroplasts (34%), secretory pathways (8%) and mitochondrion (3%). CONCLUSION On the basis of these findings, we proposed that some proteins related to electron transport chain of photosynthesis, antioxidant enzymes, HSPs and other stress response proteins, and glycolysis may play key roles in enhancing grapevine adaptation to and recovery capacity from heat stress. These results provide a better understanding of the proteins involved in, and mechanisms of thermotolerance in grapevines.
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Affiliation(s)
- Guo-Tian Liu
- Key laboratory of Plant Resources and Beijing Key Laboratory of Grape Science and Enology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, P. R., China
- University of China Academy of Sciences, Beijing 100049, P. R., China
| | - Ling Ma
- Key laboratory of Plant Resources and Beijing Key Laboratory of Grape Science and Enology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, P. R., China
- University of China Academy of Sciences, Beijing 100049, P. R., China
| | - Wei Duan
- Key laboratory of Plant Resources and Beijing Key Laboratory of Grape Science and Enology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, P. R., China
| | - Bai-Chen Wang
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, P. R., China
| | - Ji-Hu Li
- Key laboratory of Plant Resources and Beijing Key Laboratory of Grape Science and Enology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, P. R., China
- University of China Academy of Sciences, Beijing 100049, P. R., China
| | - Hong-Guo Xu
- Key laboratory of Plant Resources and Beijing Key Laboratory of Grape Science and Enology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, P. R., China
| | - Xue-Qing Yan
- Beijing Computing Center, Beijing 100094, P. R. China
| | - Bo-Fang Yan
- Key laboratory of Plant Resources and Beijing Key Laboratory of Grape Science and Enology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, P. R., China
- University of China Academy of Sciences, Beijing 100049, P. R., China
| | - Shao-Hua Li
- Key laboratory of Plant Resources and Beijing Key Laboratory of Grape Science and Enology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, P. R., China
- Key laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botany Garden, Chinese Academy of Sciences, Wuhan 430074, P. R., China
| | - Li-Jun Wang
- Key laboratory of Plant Resources and Beijing Key Laboratory of Grape Science and Enology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, P. R., China
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Firrao G, Martini M, Ermacora P, Loi N, Torelli E, Foissac X, Carle P, Kirkpatrick BC, Liefting L, Schneider B, Marzachì C, Palmano S. Genome wide sequence analysis grants unbiased definition of species boundaries in "Candidatus Phytoplasma". Syst Appl Microbiol 2013; 36:539-48. [PMID: 24034865 DOI: 10.1016/j.syapm.2013.07.003] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2013] [Revised: 07/08/2013] [Accepted: 07/18/2013] [Indexed: 10/26/2022]
Abstract
The phytoplasmas are currently named using the Candidatus category, as the inability to grow them in vitro prevented (i) the performance of tests, such as DNA-DNA hybridization, that are regarded as necessary to establish species boundaries, and (ii) the deposition of type strains in culture collections. The recent accession to complete or nearly complete genome sequence information disclosed the opportunity to apply to the uncultivable phytoplasmas the same taxonomic approaches used for other bacteria. In this work, the genomes of 14 strains, belonging to the 16SrI, 16SrIII, 16SrV and 16SrX groups, including the species "Ca. P. asteris", "Ca. P. mali", "Ca. P. pyri", "Ca. P. pruni", and "Ca. P. australiense" were analyzed along with Acholeplasma laidlawi, to determine their taxonomic relatedness. Average nucleotide index (ANIm), tetranucleotide signature frequency correlation index (Tetra), and multilocus sequence analysis of 107 shared genes using both phylogenetic inference of concatenated (DNA and amino acid) sequences and consensus networks, were carried out. The results were in large agreement with the previously established 16S rDNA based classification schemes. Moreover, the taxonomic relationships within the 16SrI, 16SrIII and 16SrX groups, that represent clusters of strains whose relatedness could not be determined by 16SrDNA analysis, could be comparatively evaluated with non-subjective criteria. "Ca. P. mali" and "Ca. P. pyri" were found to meet the genome characteristics for the retention into two different, yet strictly related species; representatives of subgroups 16SrI-A and 16SrI-B were also found to meet the standards used in other bacteria to distinguish separate species; the genomes of the strains belonging to 16SrIII were found more closely related, suggesting that their subdivision into Candidatus species should be approached with caution.
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Affiliation(s)
- Giuseppe Firrao
- Dipartimento di Scienze Agrarie ed Ambientali, Università di Udine, Udine, Italy; Istituto Nazionale di Biostrutture e Biosistemi, Interuniversity Consortium, Italy.
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Gambino G, Boccacci P, Margaria P, Palmano S, Gribaudo I. Hydrogen peroxide accumulation and transcriptional changes in grapevines recovered from flavescence dorée disease. PHYTOPATHOLOGY 2013; 103:776-84. [PMID: 23489524 DOI: 10.1094/phyto-11-12-0309-r] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Flavescence dorée (FD) is considered one of the most severe phytoplasma diseases affecting grapevine. The spontaneous, complete, and stable remission of the symptoms of FD (recovery) is a phenomenon that may occur in infected grapevines. The molecular bases of this phenomenon are still unclear, although some works suggest that recovery could be linked to the accumulation of hydrogen peroxide (H2O2). Several genes coding for enzymes involved in H2O2 metabolism, in the ascorbate-glutathione cycle, defense responses, and the biosynthesis of hormones were identified. The H2O2 content was biochemically determined and the expression levels of 44 genes were analyzed through quantitative real-time reverse-transcription polymerase chain reaction in healthy (H), infected by FD-associated phytoplasma (I), and 2-years-recovered (R) plants of Vitis vinifera 'Barbera'. In tissues of R plants, large amounts of H2O2 were detected, essentially linked to an upregulation of genes involved in the production of H2O2 (germin-like protein and glycolate oxidase); whereas, in I grapevines, the overexpression of some scavenging genes reduced the quantity of H2O2. The recovery state was characterized by the activation of ethylene biosynthesis and of defense genes not linked to salicylic acid (SA) signaling, such as the WRKY2 transcription factor. Conversely, I plants reacted to phytoplasma with SA-mediated signaling, even though this response does not appear to be effective against the pathogen.
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29
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Santi S, De Marco F, Polizzotto R, Grisan S, Musetti R. Recovery from stolbur disease in grapevine involves changes in sugar transport and metabolism. FRONTIERS IN PLANT SCIENCE 2013; 4:171. [PMID: 23761800 PMCID: PMC3671194 DOI: 10.3389/fpls.2013.00171] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2013] [Accepted: 05/14/2013] [Indexed: 05/21/2023]
Abstract
Grapevine can be severely affected by phytoplasmas, which are phytopathogenic Mollicutes invading the sieve elements of the host plant. The biochemical and molecular relationships between phytoplasmas and their hosts remain largely unexplored. Equally unknown is an interesting aspect of the pathogen-plant interaction called "recovery," which is a spontaneous remission of symptoms in previously symptomatic plants. Recovered plants develop resistance mechanisms correlated with ultrastructural and biochemical changes in the sieve elements. Callose as well as sugars are involved in several plant defense processes and signaling. In the present work we have examined the possible involvement of callose, as well as callose synthase, sugar transporter, and cell wall invertase genes, during the infection and after "recovery" of grapevine from bois noir (BN). Ultrastructural investigation of leaf tissue showed that callose accumulated in the sieve elements of diseased grapevine; moreover, two genes encoding for callose synthase were up-regulated in the infected leaves. Regarding sucrose, expression analysis showed that sucrose transport and cleavage were severely affected by BN phytoplasma, which induced the establishment of a carbohydrate sink in the source leaf, and was analogous to other obligate biotrophs that acquire most of their nutrients from the host plant. Interestingly, whereas in recovered plants the transcript level of sucrose synthase was similar to healthy plants, sucrose transporters as well as cell wall invertase were expressed to a greater degree in recovered leaves than in healthy ones. Recovered plants seem to acquire structural and molecular changes leading to increases in sucrose transport ability and defense signaling.
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Affiliation(s)
| | | | | | | | - Rita Musetti
- Department of Agricultural and Environmental Sciences, University of UdineUdine, Italy
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30
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Santi S, Grisan S, Pierasco A, DE Marco F, Musetti R. Laser microdissection of grapevine leaf phloem infected by stolbur reveals site-specific gene responses associated to sucrose transport and metabolism. PLANT, CELL & ENVIRONMENT 2013; 36:343-55. [PMID: 22788215 DOI: 10.1111/j.1365-3040.2012.02577.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Bois Noir is an emergent disease of grapevine that has been associated to a phytoplasma belonging to the XII-A stolbur group. In plants, phytoplasmas have been found mainly in phloem sieve elements, from where they spread moving through the pores of plates, accumulating especially in source leaves. To examine the expression of grapevine genes involved in sucrose transport and metabolism, phloem tissue, including sieve element/companion cell complexes and some parenchyma cells, was isolated from healthy and infected leaves by means of laser microdissection pressure catapulting (LMPC). Site-specific expression analysis dramatically increased sensitivity, allowing us to identify specific process components almost completely masked in whole-leaf analysis. Our findings showed decreased phloem loading through inhibition of sucrose transport and increased sucrose cleavage activity, which are metabolic changes strongly suggesting the establishment of a phytoplasma-induced switch from carbohydrate source to sink. The analysis focused at the infection site also showed a differential regulation and specificity of two pathogenesis-related thaumatin-like genes (TL4 and TL5) of the PR-5 family.
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Affiliation(s)
- Simonetta Santi
- Dipartimento di Scienze Agrarie e Ambientali, University of Udine, Via delle Scienze 208, I-33100 Udine, Italy.
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31
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Margaria P, Abbà S, Palmano S. Novel aspects of grapevine response to phytoplasma infection investigated by a proteomic and phospho-proteomic approach with data integration into functional networks. BMC Genomics 2013; 14:38. [PMID: 23327683 PMCID: PMC3564869 DOI: 10.1186/1471-2164-14-38] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2012] [Accepted: 01/09/2013] [Indexed: 12/25/2022] Open
Abstract
BACKGROUND Translational and post-translational protein modifications play a key role in the response of plants to pathogen infection. Among the latter, phosphorylation is critical in modulating protein structure, localization and interaction with other partners. In this work, we used a multiplex staining approach with 2D gels to study quantitative changes in the proteome and phosphoproteome of Flavescence dorée-affected and recovered 'Barbera' grapevines, compared to healthy plants. RESULTS We identified 48 proteins that differentially changed in abundance, phosphorylation, or both in response to Flavescence dorée phytoplasma infection. Most of them did not show any significant difference in recovered plants, which, by contrast, were characterized by changes in abundance, phosphorylation, or both for 17 proteins not detected in infected plants. Some enzymes involved in the antioxidant response that were up-regulated in infected plants, such as isocitrate dehydrogenase and glutathione S-transferase, returned to healthy-state levels in recovered plants. Others belonging to the same functional category were even down-regulated in recovered plants (oxidoreductase GLYR1 and ascorbate peroxidase). Our proteomic approach thus agreed with previously published biochemical and RT-qPCR data which reported down-regulation of scavenging enzymes and accumulation of H2O2 in recovered plants, possibly suggesting a role for this molecule in remission from infection. Fifteen differentially phosphorylated proteins (| ratio | > 2, p < 0.05) were identified in infected compared to healthy plants, including proteins involved in photosynthesis, response to stress and the antioxidant system. Many were not differentially phosphorylated in recovered compared to healthy plants, pointing to their specific role in responding to infection, followed by a return to a steady-state phosphorylation level after remission of symptoms. Gene ontology (GO) enrichment and statistical analysis showed that the general main category "response to stimulus" was over-represented in both infected and recovered plants but, in the latter, the specific child category "response to biotic stimulus" was no longer found, suggesting a return to steady-state levels for those proteins specifically required for defence against pathogens. CONCLUSIONS Proteomic data were integrated into biological networks and their interactions were represented through a hypothetical model, showing the effects of protein modulation on primary metabolic ways and related secondary pathways. By following a multiplex-staining approach, we obtained new data on grapevine proteome pathways that specifically change at the phosphorylation level during phytoplasma infection and following recovery, focusing for the first time on phosphoproteome changes during pathogen infection in this host.
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Affiliation(s)
- Paolo Margaria
- Istituto di Virologia Vegetale, CNR, Strada delle Cacce 73, 10135, Torino, Italy
| | - Simona Abbà
- Istituto di Virologia Vegetale, CNR, Strada delle Cacce 73, 10135, Torino, Italy
| | - Sabrina Palmano
- Istituto di Virologia Vegetale, CNR, Strada delle Cacce 73, 10135, Torino, Italy
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32
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Pasquier G, Lapaillerie D, Vilain S, Dupuy JW, Lomenech AM, Claverol S, Gény L, Bonneu M, Teissedre PL, Donèche B. Impact of foliar symptoms of “Esca proper” on proteins related to defense and oxidative stress of grape skins during ripening. Proteomics 2013; 13:108-18. [DOI: 10.1002/pmic.201200194] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2012] [Revised: 09/16/2012] [Accepted: 10/23/2012] [Indexed: 01/17/2023]
Affiliation(s)
- Grégory Pasquier
- Unité de recherche OENOLOGIE; Univ. Bordeaux, ISVV; EA 4577 Villenave d'Ornon France
| | - Delphine Lapaillerie
- Plateforme Protéome, Centre de Génomique Fonctionnelle Bordeaux; Univ. Bordeaux; Bordeaux France
| | - Sébastien Vilain
- Plateforme Protéome, Centre de Génomique Fonctionnelle Bordeaux; Univ. Bordeaux; Bordeaux France
| | - Jean-William Dupuy
- Plateforme Protéome, Centre de Génomique Fonctionnelle Bordeaux; Univ. Bordeaux; Bordeaux France
| | - Anne-Marie Lomenech
- Plateforme Protéome, Centre de Génomique Fonctionnelle Bordeaux; Univ. Bordeaux; Bordeaux France
| | - Stéphane Claverol
- Plateforme Protéome, Centre de Génomique Fonctionnelle Bordeaux; Univ. Bordeaux; Bordeaux France
| | - Laurence Gény
- Unité de recherche OENOLOGIE; Univ. Bordeaux, ISVV; EA 4577 Villenave d'Ornon France
| | - Marc Bonneu
- Plateforme Protéome, Centre de Génomique Fonctionnelle Bordeaux; Univ. Bordeaux; Bordeaux France
| | | | - Bernard Donèche
- Unité de recherche OENOLOGIE; Univ. Bordeaux, ISVV; EA 4577 Villenave d'Ornon France
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Petriccione M, Di Cecco I, Arena S, Scaloni A, Scortichini M. Proteomic changes in Actinidia chinensis shoot during systemic infection with a pandemic Pseudomonas syringae pv. actinidiae strain. J Proteomics 2013; 78:461-76. [DOI: 10.1016/j.jprot.2012.10.014] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2012] [Revised: 10/10/2012] [Accepted: 10/14/2012] [Indexed: 10/27/2022]
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34
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Zamany A, Liu JJ, Ekramoddoullah AKM. Comparative proteomic profiles of Pinus monticola needles during early compatible and incompatible interactions with Cronartium ribicola. PLANTA 2012; 236:1725-1746. [PMID: 22868574 DOI: 10.1007/s00425-012-1715-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2012] [Accepted: 07/11/2012] [Indexed: 05/27/2023]
Abstract
The proteomic profiles of primary needles from Cr2-resistant and cr2-susceptible Pinus monticola seedlings were analysed post Cronartium ribicola inoculation by 2-DE. One hundred-and-five protein spots exhibiting significant differential expression were identified using LC-MS/MS. Functional classification showed that the most numerous proteins are involved in defence signalling, oxidative burst, metabolic pathways, and other physiological processes. Our results revealed that differential expression of proteins in response to C. ribicola inoculation was genotype- and infection-stage dependent. Responsive proteins in resistant seedlings with incompatible white pine blister rust (WPBR) interaction included such well-characterized proteins as heat shock proteins (HSPs), reactive oxygen species (ROS) scavenging enzymes, and intermediate factors functioning in the signal transduction pathways triggered by well-known plant R genes, as well as new candidates in plant defence like sugar epimerase, GTP-binding proteins, and chloroplastic ribonucleoproteins. Fewer proteins were regulated in susceptible seedlings; most of them were in common with resistant seedlings and related to photosynthesis among others. Quantitative RT-PCR analysis confirmed HSP- and ROS-related genes played an important role in host defence in response to C. ribicola infection. To the best of our knowledge, this is the first comparative proteomics study on WPBR interactions at the early stages of host defence, which provides a reference proteomic profile for other five-needle pines as well as resistance candidates for further understanding of host resistance in the WPBR pathosystem.
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Affiliation(s)
- Arezoo Zamany
- Natural Resources Canada, Canadian Forest Service, Pacific Forestry Centre, 506 West Burnside Road, Victoria, BC, V8Z 1M5, Canada
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Bernardo L, Prinsi B, Negri AS, Cattivelli L, Espen L, Valè G. Proteomic characterization of the Rph15 barley resistance gene-mediated defence responses to leaf rust. BMC Genomics 2012; 13:642. [PMID: 23167439 PMCID: PMC3541957 DOI: 10.1186/1471-2164-13-642] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2012] [Accepted: 11/09/2012] [Indexed: 11/28/2022] Open
Abstract
Background Leaf rust, caused by the biotrophic fungal pathogen Puccinia hordei, is one of the most important foliar disease of barley (Hordeum vulgare) and represents a serious threat in many production regions of the world. The leaf rust resistance gene Rph15 is of outstanding interest for resistance breeding because it confers resistance to over 350 Puccinia hordei isolates collected from around the world. Molecular and biochemical mechanisms responsible for the Rph15 effectiveness are currently not investigated. The aim of the present work was to study the Rph15-based defence responses using a proteomic approach. Results Protein pattern changes in response to the leaf rust pathogen infection were investigated in two barley near isogenic lines (NILs), Bowman (leaf rust susceptible) and Bowman-Rph15 (leaf rust resistant), differing for the introgression of the leaf rust resistance gene Rph15. Two infection time points, 24 hours and four days post inoculation (dpi), were analysed. No statistically significant differences were identified at the early time point, while at 4 dpi eighteen protein spots were significantly up or down regulated with a fold-change equal or higher than two in response to pathogen infection. Almost all the pathogen-responsive proteins were identified in the Bowman-Rph15 resistant NIL. Protein spots were characterized by LC-MS/MS analysis and found to be involved in photosynthesis and energy metabolism, carbohydrate metabolism, protein degradation and defence. Proteomic data were complemented by transcriptional analysis of the respective genes. The identified proteins can be related to modulation of the photosynthetic apparatus components, re-direction of the metabolism to sustain defence responses and deployment of defence proteins. Conclusions The identification of leaf rust infection-modulated defence responses restricted to the resistant NIL support the hypothesis that basal defence responses of Bowman, but not the Rph15 resistance gene-based ones, are suppressed or delayed by pathogen effectors to levels below the detection power of the adopted proteomic approach. Additionally, Rph15-mediated resistance processes identified mainly resides on a modulation of primary metabolism, affecting photosyntesis and carbohydrate pool.
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Affiliation(s)
- Letizia Bernardo
- CRA-Consiglio per la ricerca e la sperimentazione in agricoltura, Genomics Research Centre, Via S. Protaso 302, Fiorenzuola d'Arda, PC I-29017, Italy
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Corrado G, Alagna F, Rocco M, Renzone G, Varricchio P, Coppola V, Coppola M, Garonna A, Baldoni L, Scaloni A, Rao R. Molecular interactions between the olive and the fruit fly Bactrocera oleae. BMC PLANT BIOLOGY 2012; 12:86. [PMID: 22694925 PMCID: PMC3733423 DOI: 10.1186/1471-2229-12-86] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2012] [Accepted: 05/22/2012] [Indexed: 05/20/2023]
Abstract
BACKGROUND The fruit fly Bactrocera oleae is the primary biotic stressor of cultivated olives, causing direct and indirect damages that significantly reduce both the yield and the quality of olive oil. To study the olive-B. oleae interaction, we conducted transcriptomic and proteomic investigations of the molecular response of the drupe. The identifications of genes and proteins involved in the fruit response were performed using a Suppression Subtractive Hybridisation technique and a combined bi-dimensional electrophoresis/nanoLC-ESI-LIT-MS/MS approach, respectively. RESULTS We identified 196 ESTs and 26 protein spots as differentially expressed in olives with larval feeding tunnels. A bioinformatic analysis of the identified non-redundant EST and protein collection indicated that different molecular processes were affected, such as stress response, phytohormone signalling, transcriptional control and primary metabolism, and that a considerable proportion of the ESTs could not be classified. The altered expression of 20 transcripts was also analysed by real-time PCR, and the most striking differences were further confirmed in the fruit of a different olive variety. We also cloned the full-length coding sequences of two genes, Oe-chitinase I and Oe-PR27, and showed that these are wound-inducible genes and activated by B. oleae punctures. CONCLUSIONS This study represents the first report that reveals the molecular players and signalling pathways involved in the interaction between the olive fruit and its most damaging biotic stressor. Drupe response is complex, involving genes and proteins involved in photosynthesis as well as in the production of ROS, the activation of different stress response pathways and the production of compounds involved in direct defence against phytophagous larvae. Among the latter, trypsin inhibitors should play a major role in drupe resistance reaction.
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Affiliation(s)
- Giandomenico Corrado
- Dipartimento di Scienze del Suolo, Pianta, Ambiente e Produzioni Animali, Universita’ degli Studi di Napoli Federico II, Via Università 100, Portici, Napoli, 80055, Italy
| | - Fiammetta Alagna
- Istituto di Genetica Vegetale, Consiglio Nazionale delle Ricerche, Via della Madonna Alta 130, Perugia, 06128, Italy
| | - Mariapina Rocco
- Dipartimento di Scienze per la Biologia, la Geologia e l’Ambiente, Universita’ del Sannio, Via dei Mulini 59/A, Benevento, 82100, Italy
| | - Giovanni Renzone
- Istituto per il Sistema Produzione Animale in Ambiente Mediterraneo, Consiglio Nazionale delle Ricerche, Via Argine 1085, Napoli, 80147, Italy
| | - Paola Varricchio
- Dipartimento di Scienze del Suolo, Pianta, Ambiente e Produzioni Animali, Universita’ degli Studi di Napoli Federico II, Via Università 100, Portici, Napoli, 80055, Italy
| | - Valentina Coppola
- Dipartimento di Scienze del Suolo, Pianta, Ambiente e Produzioni Animali, Universita’ degli Studi di Napoli Federico II, Via Università 100, Portici, Napoli, 80055, Italy
| | - Mariangela Coppola
- Dipartimento di Scienze del Suolo, Pianta, Ambiente e Produzioni Animali, Universita’ degli Studi di Napoli Federico II, Via Università 100, Portici, Napoli, 80055, Italy
| | - Antonio Garonna
- Dipartimento di Entomologia e Zoologia Agraria “F. Silvestri”, Universita’ degli Studi di Napoli Federico II, Via Università 100, Portici, 80055, Italy
| | - Luciana Baldoni
- Istituto di Genetica Vegetale, Consiglio Nazionale delle Ricerche, Via della Madonna Alta 130, Perugia, 06128, Italy
| | - Andrea Scaloni
- Istituto per il Sistema Produzione Animale in Ambiente Mediterraneo, Consiglio Nazionale delle Ricerche, Via Argine 1085, Napoli, 80147, Italy
| | - Rosa Rao
- Dipartimento di Scienze del Suolo, Pianta, Ambiente e Produzioni Animali, Universita’ degli Studi di Napoli Federico II, Via Università 100, Portici, Napoli, 80055, Italy
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Rampitsch C, Bykova NV. Proteomics and plant disease: Advances in combating a major threat to the global food supply. Proteomics 2012; 12:673-90. [DOI: 10.1002/pmic.201100359] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2011] [Revised: 09/23/2011] [Accepted: 10/11/2011] [Indexed: 12/25/2022]
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Savidor A, Teper D, Gartemann KH, Eichenlaub R, Chalupowicz L, Manulis-Sasson S, Barash I, Tews H, Mayer K, Giannone RJ, Hettich RL, Sessa G. The Clavibacter michiganensis subsp. michiganensis–Tomato Interactome Reveals the Perception of Pathogen by the Host and Suggests Mechanisms of Infection. J Proteome Res 2011; 11:736-50. [DOI: 10.1021/pr200646a] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Alon Savidor
- Department of Molecular Biology and Ecology of Plants, Tel Aviv University, Tel Aviv 69978, Israel
| | - Doron Teper
- Department of Molecular Biology and Ecology of Plants, Tel Aviv University, Tel Aviv 69978, Israel
| | - Karl-Heinz Gartemann
- Department of Genetechnology/Microbiology, Faculty of Biology, University of Bielefeld, 33501 Bielefeld, Germany
| | - Rudolf Eichenlaub
- Department of Genetechnology/Microbiology, Faculty of Biology, University of Bielefeld, 33501 Bielefeld, Germany
| | - Laura Chalupowicz
- Department of Plant Pathology and Weed Research, ARO, The Volcani Center, Bet Dagan 50250, Israel
| | - Shulamit Manulis-Sasson
- Department of Plant Pathology and Weed Research, ARO, The Volcani Center, Bet Dagan 50250, Israel
| | - Isaac Barash
- Department of Molecular Biology and Ecology of Plants, Tel Aviv University, Tel Aviv 69978, Israel
| | - Helena Tews
- Department of Genetechnology/Microbiology, Faculty of Biology, University of Bielefeld, 33501 Bielefeld, Germany
| | - Kerstin Mayer
- Department of Genetechnology/Microbiology, Faculty of Biology, University of Bielefeld, 33501 Bielefeld, Germany
| | - Richard J. Giannone
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Robert L. Hettich
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Guido Sessa
- Department of Molecular Biology and Ecology of Plants, Tel Aviv University, Tel Aviv 69978, Israel
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Spagnolo A, Magnin-Robert M, Alayi TD, Cilindre C, Mercier L, Schaeffer-Reiss C, Van Dorsselaer A, Clément C, Fontaine F. Physiological changes in green stems of Vitis vinifera L. cv. Chardonnay in response to esca proper and apoplexy revealed by proteomic and transcriptomic analyses. J Proteome Res 2011; 11:461-75. [PMID: 22050466 DOI: 10.1021/pr200892g] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Among grapevine trunk diseases, esca proper and apoplexy commonly represent a threat for viticulture worldwide. To retrieve further information about the mechanisms activated in apoplectic and esca proper-affected plants, a two-dimensional gel electrophoresis (2-DE) based analysis was conducted on green stems from 26-year-old standing vines. Symptomatic and asymptomatic stems from both apoplectic (A) and esca proper-affected (E) plants compared to control (without visual symptom since 10 years) stems were studied. Thirty-three differentially expressed proteins were identified by nanoLC-MS/MS and included into three groups conceptually defined as proteins involved in (i) metabolism and energy, (ii) stress tolerance, and (iii) defense response. For nine of them, expression of the relative mRNA's was also monitored by qRT-PCR. Proteome variations were specifically related to apoplexy and esca proper but were more similar in asymptomatic stems than in the symptomatic ones. Remarkable quantitative differences were noted for several proteins in symptomatic stems according to the expressed form, A and E. Results further indicate that similar responses are likely activated in asymptomatic stems but a various quantitative expression is triggered upon onset of apoplexy or esca proper symptoms while both kind of plants are infected by the same pathogenic fungi.
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Affiliation(s)
- Alessandro Spagnolo
- Université de Reims Champagne-Ardenne, URVVC EA 2069, Laboratoire Stress, Défenses et Reproduction des Plantes, BP 1039, 51687 Reims Cedex 2, France
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Milli A, Cecconi D, Bortesi L, Persi A, Rinalducci S, Zamboni A, Zoccatelli G, Lovato A, Zolla L, Polverari A. Proteomic analysis of the compatible interaction between Vitis vinifera and Plasmopara viticola. J Proteomics 2011; 75:1284-302. [PMID: 22120121 DOI: 10.1016/j.jprot.2011.11.006] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2011] [Revised: 10/13/2011] [Accepted: 11/04/2011] [Indexed: 11/26/2022]
Abstract
We analyzed the proteome of grapevine (Vitis vinifera) leaves 24, 48 and 96 h post infection (hpi) with the downy mildew pathogen Plasmopara viticola. Total proteins were separated on 2-DE gels. By MS analysis, we identified 82 unique grapevine proteins differentially expressed after infection. Upregulated proteins were often included in the functional categories of general metabolism and stress response, while proteins related to photosynthesis and energy production were mostly downregulated. As expected, the activation of a defense reaction was observed more often at the late time point, consistent with the establishment of a compatible interaction. Most proteins involved in resistance were isoforms of different PR-10 pathogenesis-related proteins. Although >50 differentially expressed protein isoforms were observed at 24 and 96 hpi, only 18 were detected at 48 hpi and no defense-related proteins were among this group. This profile suggests a transient breakdown in defense responses accompanying the onset of disease, further supported by gene expression analyses and by a western blot analysis of a PR-10 protein. Our data reveal the complex modulation of plant metabolism and defense responses during compatible interactions, and provide insight into the underlying molecular processes which may eventually yield novel strategies for pathogen control in the field.
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Affiliation(s)
- Alberto Milli
- Dept. of Biotechnology, University of Verona, Verona, Italy
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Taheri F, Nematzadeh G, Zamharir MG, Nekouei MK, Naghavi M, Mardi M, Salekdeh GH. Proteomic analysis of the Mexican lime tree response to "Candidatus Phytoplasma aurantifolia" infection. MOLECULAR BIOSYSTEMS 2011; 7:3028-35. [PMID: 21853195 DOI: 10.1039/c1mb05268c] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
"Candidatus Phytoplasma aurantifolia" is the causative agent of witches' broom disease in the Mexican lime tree (Citrus aurantifolia L.), and is responsible for major tree losses in Southern Iran and Oman. The pathogen is strictly biotrophic, and, therefore, completely dependent on living host cells for its survival. The molecular basis of compatibility and disease development in this system is poorly understood. We applied a proteomics approach to analyse gene expression in Mexican limes infected with "Ca. Phytoplasma aurantifolia". Leaf samples were collected from healthy and infected plants and were analysed using 2-DE coupled with MS. Among 800 leaf proteins that were detected reproducibly in eight biological replicates of healthy and eight biological replicates of infected plants, 55 showed a significant response to the disease. MS resulted in identification of 39 regulated proteins, which included proteins that were involved in oxidative stress defence, photosynthesis, metabolism, and the stress response. Our results provide the first proteomic view of the molecular basis of the infection process and identify genes that could help inhibit the effects of the pathogen.
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Affiliation(s)
- Farzan Taheri
- Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran, P.O. Box 31535-1897, Karaj, Tehran, Iran
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Giribaldi M, Purrotti M, Pacifico D, Santini D, Mannini F, Caciagli P, Rolle L, Cavallarin L, Giuffrida MG, Marzachì C. A multidisciplinary study on the effects of phloem-limited viruses on the agronomical performance and berry quality of Vitis vinifera cv. Nebbiolo. J Proteomics 2011; 75:306-15. [PMID: 21856458 DOI: 10.1016/j.jprot.2011.08.006] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2011] [Revised: 08/03/2011] [Accepted: 08/05/2011] [Indexed: 02/08/2023]
Abstract
Viral infections are known to have a detrimental effect on grapevine yield and performance, but there is still a lack of knowledge about their effect on the quality and safety of end products. Vines of Vitis vinifera cv. Nebbiolo clone 308, affected simultaneously by Grapevine leafroll-associated virus 1 (GLRaV-1), Grapevine virus A (GVA), and Rupestris stem pitting associated virus (RSPaV), were subjected to integrated analyses of agronomical performance, grape berry characteristics, instrumental texture profile, and proteome profiling. The comparison of performance and grape quality of healthy and infected vines cultivated in a commercial vineyard revealed similar shoot fertility, number of clusters, total yield, with significant differences in titratable acidity, and resveratrol content. Also some texture parameters such as cohesiveness and resilience were altered in berries of infected plants. The proteomic analysis of skin and pulp visualized about 400 spots. The ANOVA analysis on 2D gels revealed significant differences among healthy and virus-infected grape berries for 12 pulp spots and 7 skin spots. Virus infection mainly influenced proteins involved in the response to oxidative stress in the berry skin, and proteins involved in cell structure metabolism in the pulp.
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Affiliation(s)
- Marzia Giribaldi
- Istituto di Scienze delle Produzioni Alimentari, National Research Council, Grugliasco (TO), Italy
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Singh DK, McNellis TW. Fibrillin protein function: the tip of the iceberg? TRENDS IN PLANT SCIENCE 2011; 16:432-41. [PMID: 21571574 DOI: 10.1016/j.tplants.2011.03.014] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2011] [Revised: 03/31/2011] [Accepted: 03/31/2011] [Indexed: 05/03/2023]
Abstract
Fibrillins are nuclear-encoded, plastid proteins associated with chromoplast fibrils and chloroplast plastoglobules, thylakoids, photosynthetic antenna complexes, and stroma. There are 12 sub-families of fibrillins. However, only three of these sub-families have been characterized genetically or functionally. We review evidence indicating that fibrillins are involved in plastoglobule structural development, chromoplast pigment accumulation, hormonal responses, protection of the photosynthetic apparatus from photodamage, and plant resistance to a range of biotic and abiotic stresses. The area of fibrillin research has substantial growth potential and will contribute to better understanding of mechanisms of plant stress tolerance and plastid structure and function.
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Affiliation(s)
- Dharmendra K Singh
- Department of Plant Pathology, The Pennsylvania State University, University Park, PA 16802, USA
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