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Jabłoński M. Halogen Bond to Experimentally Significant N-Heterocyclic Carbenes (I, IMe 2, I iPr 2, I tBu 2, IPh 2, IMes 2, IDipp 2, IAd 2; I = Imidazol-2-ylidene). Int J Mol Sci 2023; 24:ijms24109057. [PMID: 37240403 DOI: 10.3390/ijms24109057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 05/15/2023] [Accepted: 05/18/2023] [Indexed: 05/28/2023] Open
Abstract
The subjects of the article are halogen bonds between either XCN or XCCH (X = Cl, Br, I) and the carbene carbon atom in imidazol-2-ylidene (I) or its derivatives (IR2) with experimentally significant and systematically increased R substituents at both nitrogen atoms: methyl = Me, iso-propyl = iPr, tert-butyl = tBu, phenyl = Ph, mesityl = Mes, 2,6-diisopropylphenyl = Dipp, 1-adamantyl = Ad. It is shown that the halogen bond strength increases in the order Cl < Br < I and the XCN molecule forms stronger complexes than XCCH. Of all the carbenes considered, IMes2 forms the strongest and also the shortest halogen bonds with an apogee for complex IMes2⋯ICN for which D0 = 18.71 kcal/mol and dC⋯I = 2.541 Å. In many cases, IDipp2 forms as strong halogen bonds as IMes2. Quite the opposite, although characterized by the greatest nucleophilicity, ItBu2 forms the weakest complexes (and the longest halogen bonds) if X ≠ Cl. While this finding can easily be attributed to the steric hindrance exerted by the highly branched tert-butyl groups, it appears that the presence of the four C-H⋯X hydrogen bonds may also be of importance here. Similar situation occurs in the case of complexes with IAd2.
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Affiliation(s)
- Mirosław Jabłoński
- Faculty of Chemistry, Nicolaus Copernicus University in Toruń, Gagarina 7, 87-100 Torun, Poland
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2
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Brusar V, Forjan M, Ljubić I, Alešković M, Becker K, Vdović S. Ultrafast Photoelimination of Nitrogen from Upper Excited States of Diazoalkanes and the Fate of Carbenes Formed in the Reaction. J Org Chem 2023; 88:4286-4300. [PMID: 36943919 DOI: 10.1021/acs.joc.2c02875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/23/2023]
Abstract
The photochemical reactivity of diphenyldiazomethane 1 and phenyl 1- and 2-adamantyl diazomethanes 2 and 3, respectively, was investigated by transient absorption spectroscopy (TA). Photoelimination of N2 upon UV excitation takes place in the anti-Kasha ultrafast photochemical reaction from the upper excited singlet states to deliver singlet carbenes, which were, in the case of 1 and 2, detected by fs-TA. The reactivity of the carbenes differs with respect to the substituent at the carbene center. The singlet car-1 in a nonpolar solvent delivers the triplet carbene by intersystem crossing (ISC). Singlet car-2 does not undergo ISC but reacts in the intermolecular insertion reactions into C-H bonds. Car-3 has an α-C-H bond next to the carbene center and reacts rapidly in the intramolecular C-H insertion reaction to deliver alkene, precluding its detection by fs-TA. However, the isolation of ketone photoproducts from 3 is highly indicative of triplet car-3's intermediate formation. The TA spectra from the S1-S3 states of 1-3 were computed using time-dependent density functional theory, while the multiconfigurational perturbation theory to the second order was used for the absorption spectra of the corresponding singlet and triplet carbenes. The modeled and measured spectra are in good agreement, and the computations corroborate the assignments of the key short-lived intermediates.
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Affiliation(s)
- Vedran Brusar
- Centre for Advanced Laser Techniques, Institute of Physics, Bijenička cesta 46, 10 000 Zagreb, Croatia
| | - Mateo Forjan
- Centre for Advanced Laser Techniques, Institute of Physics, Bijenička cesta 46, 10 000 Zagreb, Croatia
| | - Ivan Ljubić
- Department of Physical Chemistry, Ruđer Bošković Institute, Bijenička cesta 54, 10 000 Zagreb, Croatia
| | - Marija Alešković
- Department of Organic Chemistry and Biochemistry, Ruđer Bošković Institute, Bijenička cesta 54, 10 000 Zagreb, Croatia
| | - Kristin Becker
- Department of Organic Chemistry and Biochemistry, Ruđer Bošković Institute, Bijenička cesta 54, 10 000 Zagreb, Croatia
| | - Silvije Vdović
- Centre for Advanced Laser Techniques, Institute of Physics, Bijenička cesta 46, 10 000 Zagreb, Croatia
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3
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Chen Y, Yao L, Wang F. Hydrogen-bonding Interactions involving the Imidazol-2-ylidene and Its Heavy-atom Analogues. COMPUT THEOR CHEM 2023. [DOI: 10.1016/j.comptc.2023.114020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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4
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Nature of Beryllium, Magnesium, and Zinc Bonds in Carbene⋯MX 2 (M = Be, Mg, Zn; X = H, Br) Dimers Revealed by the IQA, ETS-NOCV and LED Methods. Int J Mol Sci 2022; 23:ijms232314668. [PMID: 36498996 PMCID: PMC9738500 DOI: 10.3390/ijms232314668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Revised: 11/21/2022] [Accepted: 11/22/2022] [Indexed: 11/25/2022] Open
Abstract
The nature of beryllium−, magnesium− and zinc−carbene bonds in the cyclopropenylidene⋯MX2 (M = Be, Mg, Zn; X = H, Br) and imidazol-2-ylidene⋯MBr2 dimers is investigated by the joint use of the topological QTAIM-based IQA decomposition scheme, the molecular orbital-based ETS-NOCV charge and energy decomposition method, and the LED energy decomposition approach based on the state-of-the-art DLPNO-CCSD(T) method. All these methods show that the C⋯M bond strengthens according to the following order: Zn < Mg << Be. Electrostatics is proved to be the dominant bond component, whereas the orbital component is far less important. It is shown that QTAIM/IQA underestimates electrostatic contribution for zinc bonds with respect to both ETS-NOCV and LED schemes. The σ carbene→MX2 donation appears to be much more important than the MX2→ carbene back-donation of π symmetry. The substitution of hydrogen atoms by bromine (X in MX2) strengthens the metal−carbene bond in all cases. The physical origin of rotational barriers has been unveiled by the ETS-NOCV approach.
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5
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Junxi L, Fupeng Z, Bomiao Q, Weimin J, Hongqiang L, Qiong S. Reaction of CHCl•- with HCHO and H2O: A theoretical study. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113932] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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6
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Jabłoński M. On the Coexistence of the Carbene⋯H-D Hydrogen Bond and Other Accompanying Interactions in Forty Dimers of N-Heterocyclic-Carbenes (I, IMe 2, I iPr 2, I tBu 2, IMes 2, IDipp 2, IAd 2; I = imidazol-2-ylidene) and Some Fundamental Proton Donors (HF, HCN, H 2O, MeOH, NH 3). Molecules 2022; 27:molecules27175712. [PMID: 36080481 PMCID: PMC9457876 DOI: 10.3390/molecules27175712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Revised: 08/25/2022] [Accepted: 08/29/2022] [Indexed: 11/16/2022] Open
Abstract
The subject of research is forty dimers formed by imidazol-2-ylidene (I) or its derivative (IR2) obtained by replacing the hydrogen atoms in both N-H bonds with larger important and popular substituents of increasing complexity (methyl = Me, iso-propyl = iPr, tert-butyl = tBu, phenyl = Ph, mesityl = Mes, 2,6-diisopropylphenyl = Dipp, 1-adamantyl = Ad) and fundamental proton donor (HD) molecules (HF, HCN, H2O, MeOH, NH3). While the main goal is to characterize the generally dominant C⋯H-D hydrogen bond engaging a carbene carbon atom, an equally important issue is the often omitted analysis of the role of accompanying secondary interactions. Despite the often completely different binding possibilities of the considered carbenes, and especially HD molecules, several general trends are found. Namely, for a given carbene, the dissociation energy values of the IR2⋯HD dimers increase in the following order: NH3< H2O < HCN ≤ MeOH ≪ HF. Importantly, it is found that, for a given HD molecule, IDipp2 forms the strongest dimers. This is attributed to the multiplicity of various interactions accompanying the dominant C⋯H-D hydrogen bond. It is shown that substitution of hydrogen atoms in both N-H bonds of the imidazol-2-ylidene molecule by the investigated groups leads to stronger dimers with HF, HCN, H2O or MeOH. The presented results should contribute to increasing the knowledge about the carbene chemistry and the role of intermolecular interactions, including secondary ones.
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Affiliation(s)
- Mirosław Jabłoński
- Faculty of Chemistry, Nicolaus Copernicus University in Toruń, ul. Gagarina 7, 87-100 Toruń, Poland
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7
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Mitchell EC, Wolf ME, Turney JM, Schaefer HF. Group 15 and 16 Nitrene-Like Pnictinidenes. Chemistry 2021; 27:14461-14471. [PMID: 34327737 DOI: 10.1002/chem.202101832] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Indexed: 11/09/2022]
Abstract
Pnictinidenes are an increasingly relevant species in main group chemistry and generally exhibit proclivity for the triplet electronic ground state. However, the elusive singlet electronic states are often desired for chemical applications. We predict the singlet-triplet energy differences (ΔEST =ESinglet -ETriplet ) of simple group 15 and 16 substituted pnictinidenes (Pn-R; Pn=P, As, Sb, or Bi) with highly reliable focal-point analyses targeting the CCSDTQ/CBS level of theory. The only cases we predict to have favorable singlet states are P-PH2 (-3.2 kcal mol-1 ) and P-NH2 (-0.2 kcal mol-1 ). ΔEST trends are discussed in light of the geometric predictions as well as qualitative natural bond order analysis to elucidate some of the important electronic structure features. Our work provides a rigorous benchmark for the ΔEST of fundamental Pn-R moieties and provides a firm foundation for the continued study of heavier pnictinidenes.
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Affiliation(s)
- Erica C Mitchell
- Center for Computational Quantum Chemistry Department of Chemistry, University of Georgia, Athens, GA 30602, USA
| | - Mark E Wolf
- Center for Computational Quantum Chemistry Department of Chemistry, University of Georgia, Athens, GA 30602, USA
| | - Justin M Turney
- Center for Computational Quantum Chemistry Department of Chemistry, University of Georgia, Athens, GA 30602, USA
| | - Henry F Schaefer
- Center for Computational Quantum Chemistry Department of Chemistry, University of Georgia, Athens, GA 30602, USA
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8
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Lechner MH, Izsák R, Nooijen M, Neese F. A perturbative approach to multireference equation-of-motion coupled cluster. Mol Phys 2021. [DOI: 10.1080/00268976.2021.1939185] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Marvin H. Lechner
- Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany
| | - Róbert Izsák
- Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany
- Department of Chemistry and Biochemistry, Middlebury College, Middlebury, USA
| | - Marcel Nooijen
- Department of Chemistry, University of Waterloo, Waterloo, Canada
| | - Frank Neese
- Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany
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9
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Jabłoński M. Study of Beryllium, Magnesium, and Spodium Bonds to Carbenes and Carbodiphosphoranes. Molecules 2021; 26:2275. [PMID: 33920004 PMCID: PMC8071025 DOI: 10.3390/molecules26082275] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Revised: 04/09/2021] [Accepted: 04/11/2021] [Indexed: 11/17/2022] Open
Abstract
The aim of this article is to present results of theoretical study on the properties of C⋯M bonds, where C is either a carbene or carbodiphosphorane carbon atom and M is an acidic center of MX2 (M = Be, Mg, Zn). Due to the rarity of theoretical data regarding the C⋯Zn bond (i.e., the zinc bond), the main focus is placed on comparing the characteristics of this interaction with C⋯Be (beryllium bond) and C⋯Mg (magnesium bond). For this purpose, theoretical studies (ωB97X-D/6-311++G(2df,2p)) have been performed for a large group of dimers formed by MX2 (X = H, F, Cl, Br, Me) and either a carbene ((NH2)2C, imidazol-2-ylidene, imidazolidin-2-ylidene, tetrahydropyrymid-2-ylidene, cyclopropenylidene) or carbodiphosphorane ((PH3)2C, (NH3)2C) molecule. The investigated dimers are characterized by a very strong charge transfer effect from either the carbene or carbodiphosphorane molecule to the MX2 one. This may even be over six times as strong as in the water dimer. According to the QTAIM and NCI method, the zinc bond is not very different than the beryllium bond, with both featuring a significant covalent contribution. However, the zinc bond should be definitely stronger if delocalization index is considered.
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Affiliation(s)
- Mirosław Jabłoński
- Faculty of Chemistry, Nicolaus Copernicus University, 87-100 Toruń, Poland
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10
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Rahmi K, Kassaee MZ, Khorshidvand N. Comparison of bis(alkylthio)carbenes by density functional and Second‐order Møller–Plesset perturbation theory. J PHYS ORG CHEM 2021. [DOI: 10.1002/poc.4122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Keywan Rahmi
- Faculty of Basic Sciences Tarbiat Modares University Tehran Iran
| | | | - Neda Khorshidvand
- Faculty of Basic Sciences Tarbiat Modares University Tehran Iran
- Department of Chemistry Tarbiat Modares University Tehran Iran
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11
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Priebbenow DL. Insights into the Stability of Siloxy Carbene Intermediates and Their Corresponding Oxocarbenium Ions. J Org Chem 2019; 84:11813-11822. [PMID: 31424932 DOI: 10.1021/acs.joc.9b01698] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Siloxy carbenes, formed thermally or photochemically from acyl silanes via a 1,2-Brook rearrangement, are intriguing reactive intermediates that partake in a range of chemical reactions. To gain further insight into the properties of this class of carbenes, the thermodynamic stabilities of a series of known siloxy carbenes were explored on the basis of hydrogenation enthalpies. Calculations were conducted at the B3LYP-D3(BJ) level (using dispersion-corrected DFT) on siloxy carbenes (X-C-OSiR3, singlet and triplet state), oxocarbenium ions (X-CH-OSiR3+), and their hydrogen addition products (X-CH2-OSiR3). Overall, strong correlation between singlet-triplet gaps and hydrogenation enthalpies was observed. Carbene stabilization enthalpy (CSE) values were also determined to provide additional insight into the structural features that influence the stability of siloxy carbenes.
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Affiliation(s)
- Daniel L Priebbenow
- School of Life and Environmental Sciences , Deakin University , Waurn Ponds , Australia , 3216
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12
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Xu J, Mieres-Perez J, Sanchez-Garcia E, Lee JK. Gas-Phase Deprotonation of Benzhydryl Cations: Carbene Basicity, Multiplicity, and Rearrangements. J Org Chem 2019; 84:7685-7693. [PMID: 31008604 DOI: 10.1021/acs.joc.9b00496] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Many fundamental properties of carbenes, particularly basicity, remain poorly understood. Herein, an experimental and computational examination of the deprotonation of a series of benzhydryl cations has been undertaken. These studies represent the first attempt at providing experimental values for diarylcarbene basicities. Pathways to deprotonation, including whether the singlet or triplet carbene is formed, are probed. Because diarylcarbenes are expected to be among the strongest organic bases known, assessing the energetics of protonation of these species is of fundamental importance for a wide range of chemical processes.
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Affiliation(s)
- Jiahui Xu
- Department of Chemistry and Chemical Biology , Rutgers, The State University of New Jersey , New Brunswick , New Jersey 08901 , United States
| | - Joel Mieres-Perez
- Computational Biochemistry, Center of Medical Biotechnology , University of Duisburg-Essen , D-45141 Essen , Germany
| | - Elsa Sanchez-Garcia
- Computational Biochemistry, Center of Medical Biotechnology , University of Duisburg-Essen , D-45141 Essen , Germany
| | - Jeehiun K Lee
- Department of Chemistry and Chemical Biology , Rutgers, The State University of New Jersey , New Brunswick , New Jersey 08901 , United States
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13
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Affiliation(s)
- Mirosław Jabłoński
- Department of Quantum Chemistry, Faculty of ChemistryNicolaus Copernicus University in Toruń 7‐Gagarina St. Toruń 87‐100 Poland
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14
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Bhagat S, Arfeen M, Das G, Patel N, Bharatam PV. Electronic and ligating properties of carbocyclic carbenes: A theoretical investigation. J Comput Chem 2018; 40:726-733. [PMID: 30549074 DOI: 10.1002/jcc.25756] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2018] [Revised: 10/27/2018] [Accepted: 11/01/2018] [Indexed: 11/05/2022]
Abstract
Carbocyclic carbenes (CCCs) are a class of nucleophilic carbenes which are very similar to N-heterocyclic carbenes (NHCs) in terms of their reactivity, but they do not contain a stabilizing heteroatom in their cyclic ring system. In this study, 17 representative known CCCs and 34 newly designed CCCs are evaluated using quantum chemical methods, and the results are compared in terms of their stability, nucleophilicity, and proton affinity (PA) parameters. The results are divided on the basis of ring size of the known and reported CCCs. The stability, nucleophilicity, PA, complexation energy, and bond strength-related parameters were estimated using M06/6-311++G(d,p) method. The results indicated that the CCCs known in the literature are strong σ-electron donating species and have considerable π-accepting properties. This study led to the design and identification of a few new CCCs with dimethylamine and diaminomethynyl substituents which can be singlet stable and are substantially nucleophilic. © 2018 Wiley Periodicals, Inc.
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Affiliation(s)
- Shweta Bhagat
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), S.A.S. Nagar, Mohali, Punjab, 160062, India
| | - Minhajul Arfeen
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), S.A.S. Nagar, Mohali, Punjab, 160062, India
| | - Gourav Das
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), S.A.S. Nagar, Mohali, Punjab, 160062, India
| | - Neha Patel
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), S.A.S. Nagar, Mohali, Punjab, 160062, India
| | - Prasad V Bharatam
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), S.A.S. Nagar, Mohali, Punjab, 160062, India
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15
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Ghafarian Shirazi R, Neese F, Pantazis DA. Accurate Spin-State Energetics for Aryl Carbenes. J Chem Theory Comput 2018; 14:4733-4746. [DOI: 10.1021/acs.jctc.8b00587] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Reza Ghafarian Shirazi
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Frank Neese
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Dimitrios A. Pantazis
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
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16
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Abu-Saleh AAAA, Almatarneh MH, Poirier RA. Bimolecular reactions of carbenes: Proton transfer mechanism. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.03.001] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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17
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Rosenberg MG, Brinker UH. Diastereoselective carbenes: Stereoelectronic control of bent singlet trans -2′-substituted cyclobutylcarbenes. Tetrahedron Lett 2018. [DOI: 10.1016/j.tetlet.2018.01.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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18
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Kim DY, Yang DC, Madridejos JML, Hajibabaei A, Baig C, Kim KS. Anisotropic and amphoteric characteristics of diverse carbenes. Phys Chem Chem Phys 2018; 20:13722-13733. [DOI: 10.1039/c8cp00457a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The singlet/triplet stabilities and amphoteric behaviors of diverse carbenes are elucidated with the anisotropic natures of their electron configurations.
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Affiliation(s)
- Dong Yeon Kim
- Center for Superfunctional Materials
- Department of Chemistry
- Ulsan National Institute of Science and Technology (UNIST)
- Ulsan 44919
- Korea
| | - D. ChangMo Yang
- Center for Superfunctional Materials
- Department of Chemistry
- Ulsan National Institute of Science and Technology (UNIST)
- Ulsan 44919
- Korea
| | - Jenica Marie L. Madridejos
- Center for Superfunctional Materials
- Department of Chemistry
- Ulsan National Institute of Science and Technology (UNIST)
- Ulsan 44919
- Korea
| | - Amir Hajibabaei
- Center for Superfunctional Materials
- Department of Chemistry
- Ulsan National Institute of Science and Technology (UNIST)
- Ulsan 44919
- Korea
| | - Chunggi Baig
- Department of Chemical Engineering
- Ulsan National Institute of Science and Technology (UNIST)
- Ulsan 44919
- Korea
| | - Kwang S. Kim
- Center for Superfunctional Materials
- Department of Chemistry
- Ulsan National Institute of Science and Technology (UNIST)
- Ulsan 44919
- Korea
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19
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Standard JM. Effects of Solvation and Hydrogen Bond Formation on Singlet and Triplet Alkyl or Aryl Carbenes. J Phys Chem A 2016; 121:381-393. [DOI: 10.1021/acs.jpca.6b11202] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jean M. Standard
- Department of Chemistry, Illinois State University, Normal, Illinois 61790-4160, United States
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20
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Hernandez R, Popov AV. Molecular dynamics out of equilibrium: mechanics and measurables. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2014. [DOI: 10.1002/wcms.1190] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Rigoberto Hernandez
- Center for Computational and Molecular Science and Technology, School of Chemistry and Biochemistry Georgia Institute of Technology Atlanta GA USA
| | - Alexander V. Popov
- Center for Computational and Molecular Science and Technology, School of Chemistry and Biochemistry Georgia Institute of Technology Atlanta GA USA
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21
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Rozhenko AB, Schoeller WW, Leszczynski J. On the stability of perfluoroalkyl-substituted singlet carbenes: a coupled-cluster quantum chemical study. J Phys Chem A 2014; 118:1479-88. [PMID: 24471524 DOI: 10.1021/jp408778x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
A series of trifluoromethyl-substituted carbenes R-C(:)-CF3 (R = NMe2, OMe, F, PMe2, P(NMe2)2, P(N(Pr-i)2)2, SMe, Cl); (dimethylamino)(perfluoroalkyl)carbenes Me2N-C(:)-R (R = CF3, C2F5, n-C3F7, i-C3F7, and t-C4F9) and symmetrically substituted carbenes R-C(:)-R (R = NMe2, OMe, F, PMe2, SMe, Cl) have been investigated by means of quantum chemistry methods. Different levels of approximation were used, including the CCSD(T) approach also known in quantum chemistry as the "golden standard", in combination with three different basis sets (TZVP, cc-pVDZ, cc-pVTZ). Relative stabilities of carbenes have been estimated using the differences between the singlet and triplet ground state energies (ΔEST) and energies of the hydrogenation reaction for the singlet and triplet ground states of the carbenes. The latter seem to correlate better with stability of carbenes than the ΔEST values. The (13)C NMR chemical shifts of the methylidene carbon indicate the more high-field chemical shift values in the known, isolable carbenes compared to the unstable ones. This is the first report on the expected chemical shifts in the highly unstable singlet carbenes. Using these criteria, some carbene structures from the studied series (as, for instance, Me2N-C(:)-CF3, Me2N-C(:)-C3F7-i) are proposed as good candidates for the experimental preparation.
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Affiliation(s)
- Alexander B Rozhenko
- Institute of Organic Chemistry of NAS of Ukraine , Murmans'ka str. 5, Kyiv 02094, Ukraine
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22
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Weiser BP, Woll KA, Dailey WP, Eckenhoff RG. Mechanisms revealed through general anesthetic photolabeling. CURRENT ANESTHESIOLOGY REPORTS 2013; 4:57-66. [PMID: 24563623 DOI: 10.1007/s40140-013-0040-7] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
General anesthetic photolabels are used to reveal molecular targets and molecular binding sites of anesthetic ligands. After identification, the relevance of anesthetic substrates or binding sites can be tested in biological systems. Halothane and photoactive analogs of isoflurane, propofol, etomidate, neurosteroids, anthracene, and long chain alcohols have been used in anesthetic photolabeling experiments. Interrogated protein targets include the nicotinic acetylcholine receptor, GABAA receptor, tubulin, leukocyte function-associated antigen-1, and protein kinase C. In this review, we summarize insights revealed by photolabeling these targets, as well as general features of anesthetics, such as their propensity to partition to mitochondria and bind voltage-dependent anion channels. The theory of anesthetic photolabel design and the experimental application of photoactive ligands are also discussed.
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Affiliation(s)
- Brian P Weiser
- Department of Anesthesiology & Critical Care, University of Pennsylvania Perelman School of Medicine, 3620 Hamilton Walk, Philadelphia, PA 19104 ; Department of Pharmacology, University of Pennsylvania Perelman School of Medicine, 3620 Hamilton Walk, Philadelphia, PA 19104
| | - Kellie A Woll
- Department of Anesthesiology & Critical Care, University of Pennsylvania Perelman School of Medicine, 3620 Hamilton Walk, Philadelphia, PA 19104 ; Department of Pharmacology, University of Pennsylvania Perelman School of Medicine, 3620 Hamilton Walk, Philadelphia, PA 19104
| | - William P Dailey
- Department of Chemistry, University of Pennsylvania School of Arts and Sciences, 231 S. 34th Street, Philadelphia, PA 19104
| | - Roderic G Eckenhoff
- Department of Anesthesiology & Critical Care, University of Pennsylvania Perelman School of Medicine, 3620 Hamilton Walk, Philadelphia, PA 19104
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