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Isik E, Balkan Ç, Karl V, Karakaya HÇ, Hua S, Rauch S, Tamás MJ, Koc A. Identification of novel arsenic resistance genes in yeast. Microbiologyopen 2022; 11:e1284. [PMID: 35765185 PMCID: PMC9055376 DOI: 10.1002/mbo3.1284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Revised: 04/13/2022] [Accepted: 04/13/2022] [Indexed: 11/12/2022] Open
Abstract
Arsenic is a toxic metalloid that affects human health by causing numerous diseases and by being used in the treatment of acute promyelocytic leukemia. Saccharomyces cerevisiae (budding yeast) has been extensively utilized to elucidate the molecular mechanisms underlying arsenic toxicity and resistance in eukaryotes. In this study, we applied a genomic DNA overexpression strategy to identify yeast genes that provide arsenic resistance in wild-type and arsenic-sensitive S. cerevisiae cells. In addition to known arsenic-related genes, our genetic screen revealed novel genes, including PHO86, VBA3, UGP1, and TUL1, whose overexpression conferred resistance. To gain insights into possible resistance mechanisms, we addressed the contribution of these genes to cell growth, intracellular arsenic, and protein aggregation during arsenate exposure. Overexpression of PHO86 resulted in higher cellular arsenic levels but no additional effect on protein aggregation, indicating that these cells efficiently protect their intracellular environment. VBA3 overexpression caused resistance despite higher intracellular arsenic and protein aggregation levels. Overexpression of UGP1 led to lower intracellular arsenic and protein aggregation levels while TUL1 overexpression had no impact on intracellular arsenic or protein aggregation levels. Thus, the identified genes appear to confer arsenic resistance through distinct mechanisms but the molecular details remain to be elucidated.
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Affiliation(s)
- Esin Isik
- Department of Molecular Biology and GeneticsIzmir Institute of TechnologyIzmirTurkey
| | - Çiğdem Balkan
- Department of Molecular Biology and GeneticsIzmir Institute of TechnologyIzmirTurkey
| | - Vivien Karl
- Department of Chemistry and Molecular BiologyUniversity of GothenburgGothenburgSweden
| | | | - Sansan Hua
- Department of Chemistry and Molecular BiologyUniversity of GothenburgGothenburgSweden
| | - Sebastien Rauch
- Water Environment Technology, Department of Architecture and Civil EngineeringChalmers University of TechnologyGothenburgSweden
| | - Markus J. Tamás
- Department of Chemistry and Molecular BiologyUniversity of GothenburgGothenburgSweden
| | - Ahmet Koc
- Department of Molecular Biology and GeneticsIzmir Institute of TechnologyIzmirTurkey
- Department of Genetics, School of MedicineInonu UniversityMalatyaTurkey
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2
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Involvement of the Cell Wall Integrity Pathway of Saccharomyces cerevisiae in Protection against Cadmium and Arsenate Stresses. Appl Environ Microbiol 2020; 86:AEM.01339-20. [PMID: 32859590 DOI: 10.1128/aem.01339-20] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Accepted: 08/20/2020] [Indexed: 01/07/2023] Open
Abstract
Contamination of soil and water with heavy metals and metalloids is a serious environmental problem. Cadmium and arsenic are major environmental contaminants that pose a serious threat to human health. Although toxicities of cadmium and arsenic to living organisms have been extensively studied, the molecular mechanisms of cellular responses to cadmium and arsenic remain poorly understood. In this study, we demonstrate that the cell wall integrity (CWI) pathway is involved in coping with cell wall stresses induced by cadmium and arsenate through its role in the regulation of cell wall modification. Interestingly, the Rlm1p and SBF (Swi4p-Swi6p) complex transcription factors of the CWI pathway were shown to be specifically required for tolerance to cadmium and arsenate, respectively. Furthermore, we found the PIR2 gene, encoding cell wall O-mannosylated heat shock protein, whose expression is under the control of the CWI pathway, is important for maintaining cell wall integrity during cadmium and arsenate stresses. In addition, our results revealed that the CWI pathway is involved in modulating the expression of genes involved in cell wall biosynthesis and cell cycle control in response to cadmium and arsenate via distinct sets of transcriptional regulators.IMPORTANCE Environmental pollution by metal/metalloids such as cadmium and arsenic has become a serious problem in many countries, especially in developing countries. This study shows that in the yeast S. cerevisiae, the CWI pathway plays a protective role against cadmium and arsenate through the upregulation of genes involved in cell wall biosynthesis and cell cycle control, possibly in order to modulate cell wall reconstruction and cell cycle phase transition, respectively. These data provide insights into molecular mechanisms underlying adaptive responses to cadmium and arsenate.
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3
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Vélez-Segarra V, González-Crespo S, Santiago-Cartagena E, Vázquez-Quiñones LE, Martínez-Matías N, Otero Y, Zayas JJ, Siaca R, Del Rosario J, Mejías I, Aponte JJ, Collazo NC, Lasso FJ, Snider J, Jessulat M, Aoki H, Rymond BC, Babu M, Stagljar I, Rodríguez-Medina JR. Protein Interactions of the Mechanosensory Proteins Wsc2 and Wsc3 for Stress Resistance in Saccharomyces cerevisiae. G3 (BETHESDA, MD.) 2020; 10:3121-3135. [PMID: 32641451 PMCID: PMC7466973 DOI: 10.1534/g3.120.401468] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 07/03/2020] [Indexed: 12/23/2022]
Abstract
Antifungal drug discovery and design is very challenging because of the considerable similarities in genetic features and metabolic pathways between fungi and humans. However, cell wall composition represents a notable point of divergence. Therefore, a research strategy was designed to improve our understanding of the mechanisms for maintaining fungal cell wall integrity, and to identify potential targets for new drugs that modulate the underlying protein-protein interactions in Saccharomyces cerevisiae This study defines roles for Wsc2p and Wsc3p and their interacting protein partners in the cell wall integrity signaling and cell survival mechanisms that respond to treatments with fluconazole and hydrogen peroxide. By combined genetic and biochemical approaches, we report the discovery of 12 novel protein interactors of Wsc2p and Wsc3p Of these, Wsc2p interacting partners Gtt1p and Yck2p, have opposing roles in the resistance and sensitivity to fluconazole treatments respectively. The interaction of Wsc2p with Ras2p was confirmed by iMYTH and IP-MS approaches and is shown to play a dominant role in response to oxidative stress induced by hydrogen peroxide. Consistent with an earlier study, Ras2p was also identified as an interacting partner of Wsc1p and Mid2p cell wall integrity signaling proteins. Collectively, this study expands the interaction networks of the mechanosensory proteins of the Cell Wall Integrity pathway.
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Affiliation(s)
- Vladimir Vélez-Segarra
- Department of Biochemistry, University of Puerto Rico, Medical Sciences Campus, PO Box 365067, San Juan, PR 00936-067
| | - Sahily González-Crespo
- Department of Biochemistry, University of Puerto Rico, Medical Sciences Campus, PO Box 365067, San Juan, PR 00936-067
| | - Ednalise Santiago-Cartagena
- Department of Biochemistry, University of Puerto Rico, Medical Sciences Campus, PO Box 365067, San Juan, PR 00936-067
| | - Luis E Vázquez-Quiñones
- School of Science and Technology, University Ana G. Mendez, Cupey Campus, Ana G Mendez Ave, No.1399, San Juan, PR 00926
| | - Nelson Martínez-Matías
- Department of Biochemistry, University of Puerto Rico, Medical Sciences Campus, PO Box 365067, San Juan, PR 00936-067
| | - Yamirelis Otero
- Department of Biochemistry, University of Puerto Rico, Medical Sciences Campus, PO Box 365067, San Juan, PR 00936-067
| | - Julián J Zayas
- Department of Biochemistry, University of Puerto Rico, Medical Sciences Campus, PO Box 365067, San Juan, PR 00936-067
| | - Rafael Siaca
- Department of Biochemistry, University of Puerto Rico, Medical Sciences Campus, PO Box 365067, San Juan, PR 00936-067
| | - Jeanmadi Del Rosario
- Department of Biochemistry, University of Puerto Rico, Medical Sciences Campus, PO Box 365067, San Juan, PR 00936-067
| | - Inoushka Mejías
- Department of Biochemistry, University of Puerto Rico, Medical Sciences Campus, PO Box 365067, San Juan, PR 00936-067
| | - José J Aponte
- Department of Biochemistry, University of Puerto Rico, Medical Sciences Campus, PO Box 365067, San Juan, PR 00936-067
| | - Noelani C Collazo
- Department of Biochemistry, University of Puerto Rico, Medical Sciences Campus, PO Box 365067, San Juan, PR 00936-067
| | - Francisco J Lasso
- Department of Biochemistry, University of Puerto Rico, Medical Sciences Campus, PO Box 365067, San Juan, PR 00936-067
| | - Jamie Snider
- Donnelly Centre, Department of Biochemistry, and Department of Molecular Genetics, University of Toronto, Ontario M5S 3E1, Canada
| | - Matthew Jessulat
- Department of Biochemistry, University of Regina, Regina, Saskatchewan S4S 0A2, Canada
| | - Hiroyuki Aoki
- Department of Biochemistry, University of Regina, Regina, Saskatchewan S4S 0A2, Canada
| | - Brian C Rymond
- Department of Biology, University of Kentucky, Lexington, KY 40506
| | - Mohan Babu
- Department of Biochemistry, University of Regina, Regina, Saskatchewan S4S 0A2, Canada
| | - Igor Stagljar
- Donnelly Centre, Department of Biochemistry, and Department of Molecular Genetics, University of Toronto, Ontario M5S 3E1, Canada
- Mediterranean Institute for Life Sciences, Split, Croatia
| | - José R Rodríguez-Medina
- Department of Biochemistry, University of Puerto Rico, Medical Sciences Campus, PO Box 365067, San Juan, PR 00936-067
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4
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Thakre PK, Golla U, Biswas A, Tomar RS. Identification of Histone H3 and H4 Amino Acid Residues Important for the Regulation of Arsenite Stress Signaling in Saccharomyces cerevisiae. Chem Res Toxicol 2020; 33:817-833. [PMID: 32032493 DOI: 10.1021/acs.chemrestox.9b00471] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Arsenic is an environmental carcinogen that causes many diseases in humans, including cancers and organ failures, affecting millions of people in the world. Arsenic trioxide is a drug used for the treatment of acute promyelocytic leukemia (APL). In the present study, we screened the synthetic histone H3 and H4 library in the presence of arsenite to understand the role of histone residues in arsenic toxicity. We identified residues of histone H3 and H4 crucial for arsenite stress response. The residues H3T3, H3G90, H4K5, H4G13, and H4R95 are required for the activation of Hog1 kinase in response to arsenite exposure. We showed that a reduced level of Hog1 activation increases the intracellular arsenic content in these histone mutants through the Fps1 channel. We have also noticed the reduced expression of ACR3 exporter in the mutants. The growth defect of mutants caused by arsenite exposure was suppressed in hyperosmotic conditions, in a higher concentration of glucose, and upon deletion of the FPS1 gene. The arsenite sensitive histone mutants also showed a lack of H3K4 methylation and reduced H4K16 acetylation. Altogether, we have identified the key residues in histone H3 and H4 proteins important for the regulation of Hog1 signaling, Fps1 activity, and ACR3 expression during arsenite stress.
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Affiliation(s)
- Pilendra Kumar Thakre
- Laboratory of Chromatin Biology, Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Bhopal 462066, India
| | - Upendarrao Golla
- Division of Hematology and Oncology, Penn State College of Medicine, Hershey, Pennsylvania 17033, United States
| | - Ashis Biswas
- Environmental Geochemistry Laboratory, Department of Earth and Environmental Sciences (EES), Indian Institute of Science Education and Research Bhopal, Bhopal 462066, India
| | - Raghuvir Singh Tomar
- Laboratory of Chromatin Biology, Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Bhopal 462066, India
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Jiménez-Gutiérrez E, Alegría-Carrasco E, Sellers-Moya Á, Molina M, Martín H. Not just the wall: the other ways to turn the yeast CWI pathway on. Int Microbiol 2019; 23:107-119. [PMID: 31342212 DOI: 10.1007/s10123-019-00092-2] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2019] [Revised: 07/10/2019] [Accepted: 07/11/2019] [Indexed: 12/29/2022]
Abstract
The Saccharomyces cerevisiae cell wall integrity (CWI) pathway took this name when its role in the cell response to cell wall aggressions was clearly established. The receptors involved in sensing the damage, the relevant components operating in signaling to the MAPK Slt2, the transcription factors activated by this MAPK, as well as some key regulatory mechanisms have been identified and characterized along almost 30 years. However, other stimuli that do not alter specifically the yeast cell wall, including protein unfolding, low or high pH, or plasma membrane, oxidative and genotoxic stresses, have been also found to trigger the activation of this pathway. In this review, we compile almost forty non-cell wall-specific compounds or conditions, such as tunicamycin, hypo-osmotic shock, diamide, hydroxyurea, arsenate, and rapamycin, which induce these stresses. Relevant aspects of the CWI-mediated signaling in the response to these non-conventional pathway activators are discussed. The data presented here highlight the central and key position of the CWI pathway in the safeguard of yeast cells to a wide variety of external aggressions.
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Affiliation(s)
- Elena Jiménez-Gutiérrez
- Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad Complutense de Madrid (IRICIS), Pza. Ramón y Cajal s/n, 28040, Madrid, Spain
| | - Estíbaliz Alegría-Carrasco
- Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad Complutense de Madrid (IRICIS), Pza. Ramón y Cajal s/n, 28040, Madrid, Spain
| | - Ángela Sellers-Moya
- Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad Complutense de Madrid (IRICIS), Pza. Ramón y Cajal s/n, 28040, Madrid, Spain
| | - María Molina
- Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad Complutense de Madrid (IRICIS), Pza. Ramón y Cajal s/n, 28040, Madrid, Spain.
| | - Humberto Martín
- Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad Complutense de Madrid (IRICIS), Pza. Ramón y Cajal s/n, 28040, Madrid, Spain.
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6
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Fu T, Kim JO, Han JH, Gumilang A, Lee YH, Kim KS. A Small GTPase RHO2 Plays an Important Role in Pre-infection Development in the Rice Blast Pathogen Magnaporthe oryzae. THE PLANT PATHOLOGY JOURNAL 2018; 34:470-479. [PMID: 30588220 PMCID: PMC6305172 DOI: 10.5423/ppj.oa.04.2018.0069] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2018] [Revised: 08/17/2018] [Accepted: 08/21/2018] [Indexed: 05/15/2023]
Abstract
The rice blast pathogen Magnaporthe oryzae is a global threat to rice production. Here we characterized RHO2 gene (MGG_02457) that belongs to the Rho GTPase family, using a deletion mutant. This mutant ΔMorho2 exhibited no defects in conidiation and germination but developed only 6% of appressoria in response to a hydrophobic surface when compared to the wild-type progenitor. This result indicates that MoRHO2 plays a role in appressorium development. Furthermore, exogenous cAMP treatment on the mutant led to appressoria that exhibited abnormal morphology on both hydrophobic and hydrophilic surfaces. These outcomes suggested the involvement of MoRHO2 in cAMP-mediated appressorium development. ΔMorho2 mutation also delayed the development of appressorium-like structures (ALS) at hyphal tips on hydrophobic surface, which were also abnormally shaped. These results suggested that MoRHO2 is involved in morphological development of appressoria and ALS from conidia and hyphae, respectively. As expected, ΔMorho2 mutant was defective in plant penetration, but was still able to cause lesions, albeit at a reduced rate on wounded plants. These results implied that MoRHO2 plays a role in M. oryzae virulence as well.
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Affiliation(s)
- Teng Fu
- Division of Bioresource Sciences, and Bioherb Research Institute, Kangwon National University, Chuncheon 24341,
Korea
| | - Joon-Oh Kim
- Division of Bioresource Sciences, and Bioherb Research Institute, Kangwon National University, Chuncheon 24341,
Korea
| | - Joon-Hee Han
- Division of Bioresource Sciences, and Bioherb Research Institute, Kangwon National University, Chuncheon 24341,
Korea
| | - Adiyantara Gumilang
- Division of Bioresource Sciences, and Bioherb Research Institute, Kangwon National University, Chuncheon 24341,
Korea
| | - Yong-Hwan Lee
- Department of Agricultural Biotechnology, and Center for Fungal Genetic Resources, Seoul National University, Seoul 08826,
Korea
| | - Kyoung Su Kim
- Division of Bioresource Sciences, and Bioherb Research Institute, Kangwon National University, Chuncheon 24341,
Korea
- Corresponding author: Phone) +82-33-250-6435, FAX) +82-33-259-5558, E-mail)
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7
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Liu L, Levin DE. Intracellular mechanism by which genotoxic stress activates yeast SAPK Mpk1. Mol Biol Cell 2018; 29:2898-2909. [PMID: 30230955 PMCID: PMC6249863 DOI: 10.1091/mbc.e18-07-0441] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
Stress-activated MAP kinases (SAPKs) respond to a wide variety of stressors. In most cases, the pathways through which specific stress signals are transmitted to the SAPKs are not known. The Saccharomyces cerevisiae SAPK Mpk1 (Slt2) is a well-characterized component of the cell-wall integrity (CWI) signaling pathway, which responds to physical and chemical challenges to the cell wall. However, Mpk1 is also activated in response to genotoxic stress through an unknown pathway. We show that, in contrast to cell-wall stress, the pathway for Mpk1 activation by genotoxic stress does not involve the stimulation of the MAP kinase kinases (MEKs) that function immediately upstream of Mpk1. Instead, DNA damage activates Mpk1 through induction of proteasomal degradation of Msg5, the dual-specificity protein phosphatase principally responsible for maintaining Mpk1 in a low-activity state in the absence of stress. Blocking Msg5 degradation in response to genotoxic stress prevented Mpk1 activation. This work raises the possibility that other Mpk1-activating stressors act intracellularly at different points along the canonical Mpk1 activation pathway.
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Affiliation(s)
- Li Liu
- Department of Molecular and Cell Biology, Boston University Goldman School of Dental Medicine, Boston, MA 02118
| | - David E Levin
- Department of Molecular and Cell Biology, Boston University Goldman School of Dental Medicine, Boston, MA 02118.,Department of Microbiology, Boston University School of Medicine, Boston, MA 02118
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8
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Lee J, Levin DE. Intracellular mechanism by which arsenite activates the yeast stress MAPK Hog1. Mol Biol Cell 2018; 29:1904-1915. [PMID: 29846136 PMCID: PMC6085820 DOI: 10.1091/mbc.e18-03-0185] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Stress-activated MAPKs (SAPKs) respond to a wide variety of stressors. In most cases, the pathways through which specific stress signals are transmitted to the SAPKs are not known. In this study, we delineate the intracellular signaling pathway by which the trivalent toxic metalloid arsenite [As(III)] activates the yeast SAPK Hog1. We demonstrate that, to activate Hog1, As(III) must enter the cell through the glycerol channel Fps1 and must be metabolized to methyl arsenite [MAs(III)] by the dimeric methyltransferase Mtq2:Trm112. We found that Mtq2:Trm1 displays SAM-dependent methyltransferase activity toward both As(III) and MAs(III). Additionally, we present genetic and biochemical evidence that MAs(III), but not As(III), is a potent inhibitor of the protein tyrosine phosphatases (Ptp2 and Ptp3) that normally maintain Hog1 in an inactive state. Inhibition of Ptp2 and Ptp3 by MAs(III) results in elevated Hog1 phosphorylation without activation of the protein kinases that act upstream of the SAPK and raises the possibility that other Hog1-activating stressors act intracellularly at different points along the canonical Hog1 activation pathway. Finally, we show that arsenate [As(V)], a pentavalent form of arsenic, also activates Hog1, but through a pathway that is distinct from that of As(III) and involves activation of the Hog1 MEK Pbs2.
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Affiliation(s)
- Jongmin Lee
- Department of Molecular and Cell Biology, Boston University Goldman School of Dental Medicine, Boston, MA 02118
| | - David E Levin
- Department of Molecular and Cell Biology, Boston University Goldman School of Dental Medicine, Boston, MA 02118.,Department of Microbiology, Boston University School of Medicine, Boston, MA 02118
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9
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Ahmadpour D, Maciaszczyk-Dziubinska E, Babazadeh R, Dahal S, Migocka M, Andersson M, Wysocki R, Tamás MJ, Hohmann S. The mitogen-activated protein kinase Slt2 modulates arsenite transport through the aquaglyceroporin Fps1. FEBS Lett 2016; 590:3649-3659. [DOI: 10.1002/1873-3468.12390] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2016] [Revised: 08/20/2016] [Accepted: 08/29/2016] [Indexed: 01/03/2023]
Affiliation(s)
- Doryaneh Ahmadpour
- Department of Chemistry and Molecular Biology; University of Gothenburg; Sweden
| | | | - Roja Babazadeh
- Department of Chemistry and Molecular Biology; University of Gothenburg; Sweden
| | - Sita Dahal
- Department of Chemistry and Molecular Biology; University of Gothenburg; Sweden
| | | | - Mikael Andersson
- Department of Chemistry and Molecular Biology; University of Gothenburg; Sweden
| | - Robert Wysocki
- Institute of Experimental Biology; University of Wroclaw; Poland
| | - Markus J. Tamás
- Department of Chemistry and Molecular Biology; University of Gothenburg; Sweden
| | - Stefan Hohmann
- Department of Chemistry and Molecular Biology; University of Gothenburg; Sweden
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10
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Urrialde V, Prieto D, Pla J, Alonso-Monge R. The Pho4 transcription factor mediates the response to arsenate and arsenite in Candida albicans. Front Microbiol 2015; 6:118. [PMID: 25717325 PMCID: PMC4324303 DOI: 10.3389/fmicb.2015.00118] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2014] [Accepted: 01/29/2015] [Indexed: 11/21/2022] Open
Abstract
Arsenate (As (V)) is the dominant form of the toxic metalloid arsenic (As). Microorganisms have consequently developed mechanisms to detoxify and tolerate this kind of compounds. In the present work, we have explored the arsenate sensing and signaling mechanisms in the pathogenic fungus Candida albicans. Although mutants impaired in the Hog1 or Mkc1-mediated pathways did not show significant sensitivity to this compound, both Hog1 and Mkc1 became phosphorylated upon addition of sodium arsenate to growing cells. Hog1 phosphorylation upon arsenate challenge was shown to be Ssk1-dependent. A screening designed for the identification of transcription factors involved in the arsenate response identified Pho4, a transcription factor of the myc-family, as pho4 mutants were susceptible to As (V). The expression of PHO4 was shortly induced in the presence of sodium arsenate in a Hog1-independent manner. Pho4 level affects Hog1 phosphorylation upon As (V) challenge, suggesting an indirect relationship between Pho4 activity and signaling in C. albicans. Pho4 also mediates the response to arsenite as revealed by the fact that pho4 defective mutants are sensitive to arsenite and Pho4 becomes phosphorylated upon sodium arsenite addition. Arsenite also triggers Hog1 phosphorylation by a process that is, in this case, independent of the Ssk1 kinase. These results indicate that the HOG pathway mediates the response to arsenate and arsenite in C. albicans and that the Pho4 transcription factor can differentiate among As (III), As (V) and Pi, triggering presumably specific responses.
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Affiliation(s)
- Verónica Urrialde
- Departamento de Microbiología II, Facultad de Farmacia, Universidad Complutense de Madrid Madrid, Spain
| | - Daniel Prieto
- Departamento de Microbiología II, Facultad de Farmacia, Universidad Complutense de Madrid Madrid, Spain
| | - Jesús Pla
- Departamento de Microbiología II, Facultad de Farmacia, Universidad Complutense de Madrid Madrid, Spain
| | - Rebeca Alonso-Monge
- Departamento de Microbiología II, Facultad de Farmacia, Universidad Complutense de Madrid Madrid, Spain
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11
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Zeng X, Su S, Feng Q, Wang X, Zhang Y, Zhang L, Jiang S, Li A, Li L, Wang Y, Wu C, Bai L, Duan R. Arsenic speciation transformation and arsenite influx and efflux across the cell membrane of fungi investigated using HPLC-HG-AFS and in-situ XANES. CHEMOSPHERE 2015; 119:1163-1168. [PMID: 25460757 DOI: 10.1016/j.chemosphere.2014.10.034] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2014] [Revised: 09/29/2014] [Accepted: 10/10/2014] [Indexed: 05/26/2023]
Abstract
Microorganisms dominated speciation of arsenic (As) play an important role in the biogeochemical cycling of As. In the study, species transformation of arsenite [As(III)] and As(III) influx and efflux across the cell membranes of Trichoderma asperellum SM-12F1, Penicillium janthinellum SM-12F4, and Fusarium oxysporum CZ-8F1 cells were studied using a cellular lysis plus chromatographic separation method and further the in-situ X-ray absorption near edge structure (XANES) analysis. The results indicated that As(III) can enter into fungal cells and that a portion of the As(III) can be exuded out of cells. For both As sequestrated into fungal cytoplasm and As adsorbtion onto cell walls, As(III) was found to be the dominated form of As. XANES analysis showed that As(III) accounted for 58.4%, 59.5%, and 73.0% of the total As in the cells of T. asperellum SM-12F1, P. janthinellum SM-12F4, and F. oxysporum CZ-8F1, respectively. Among these fungal strains, however, there were obvious differences in the relative proportions of arsenate [As(V)], monomethylarsonic acid (MMA), and dimethylarsinic acid (DMA). For T. asperellum SM-12F1, the proportion (%) of MMA was 31.1%, and no As(V) or DMA was detected. For F. oxysporum CZ-8F1, the proportions of As(V) and MMA were 15.8% and 8.8%, respectively, but no DMA was observed. As(V), MMA, and DMA accounted for 4.2%, 29.5%, and 8.1%, respectively, of the P. janthinellum SM-12F4 cells. Some of the intracellular As(III) can be oxidated and methylated by these fungal strains and yield As(V), MMA, and DMA as products.
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Affiliation(s)
- Xibai Zeng
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Key Laboratory of Agro-Environment, Ministry of Agriculture, Beijing, PR China.
| | - Shiming Su
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Key Laboratory of Agro-Environment, Ministry of Agriculture, Beijing, PR China.
| | - Qiufen Feng
- College of Resource and Environment, Hunan Agricultural University, Changsha, Hunan Province, PR China
| | - Xiurong Wang
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Key Laboratory of Agro-Environment, Ministry of Agriculture, Beijing, PR China
| | - Yangzhu Zhang
- College of Resource and Environment, Hunan Agricultural University, Changsha, Hunan Province, PR China
| | - Lili Zhang
- Shanghai Synchrotron Radiation Facility, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, PR China
| | - Sheng Jiang
- Shanghai Synchrotron Radiation Facility, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, PR China
| | - Aiguo Li
- Shanghai Synchrotron Radiation Facility, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, PR China
| | - Lianfang Li
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Key Laboratory of Agro-Environment, Ministry of Agriculture, Beijing, PR China
| | - Yanan Wang
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Key Laboratory of Agro-Environment, Ministry of Agriculture, Beijing, PR China
| | - Cuixia Wu
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Key Laboratory of Agro-Environment, Ministry of Agriculture, Beijing, PR China
| | - Lingyu Bai
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Key Laboratory of Agro-Environment, Ministry of Agriculture, Beijing, PR China
| | - Ran Duan
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Key Laboratory of Agro-Environment, Ministry of Agriculture, Beijing, PR China
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Abu-Jamous B, Fa R, Roberts DJ, Nandi AK. Comprehensive analysis of forty yeast microarray datasets reveals a novel subset of genes (APha-RiB) consistently negatively associated with ribosome biogenesis. BMC Bioinformatics 2014; 15:322. [PMID: 25267386 PMCID: PMC4262117 DOI: 10.1186/1471-2105-15-322] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2014] [Accepted: 09/22/2014] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The scale and complexity of genomic data lend themselves to analysis using sophisticated mathematical techniques to yield information that can generate new hypotheses and so guide further experimental investigations. An ensemble clustering method has the ability to perform consensus clustering over the same set of genes from different microarray datasets by combining results from different clustering methods into a single consensus result. RESULTS In this paper we have performed comprehensive analysis of forty yeast microarray datasets. One recently described Bi-CoPaM method can analyse expressions of the same set of genes from various microarray datasets while using different clustering methods, and then combine these results into a single consensus result whose clusters' tightness is tunable from tight, specific clusters to wide, overlapping clusters. This has been adopted in a novel way over genome-wide data from forty yeast microarray datasets to discover two clusters of genes that are consistently co-expressed over all of these datasets from different biological contexts and various experimental conditions. Most strikingly, average expression profiles of those clusters are consistently negatively correlated in all of the forty datasets while neither profile leads or lags the other. CONCLUSIONS The first cluster is enriched with ribosomal biogenesis genes. The biological processes of most of the genes in the second cluster are either unknown or apparently unrelated although they show high connectivity in protein-protein and genetic interaction networks. Therefore, it is possible that this mostly uncharacterised cluster and the ribosomal biogenesis cluster are transcriptionally oppositely regulated by some common machinery. Moreover, we anticipate that the genes included in this previously unknown cluster participate in generic, in contrast to specific, stress response processes. These novel findings illuminate coordinated gene expression in yeast and suggest several hypotheses for future experimental functional work. Additionally, we have demonstrated the usefulness of the Bi-CoPaM-based approach, which may be helpful for the analysis of other groups of (microarray) datasets from other species and systems for the exploration of global genetic co-expression.
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Affiliation(s)
- Basel Abu-Jamous
- />Department of Electronic and Computer Engineering, Brunel University, Uxbridge, Middlesex, UB8 3PH UK
| | - Rui Fa
- />Department of Electronic and Computer Engineering, Brunel University, Uxbridge, Middlesex, UB8 3PH UK
| | - David J Roberts
- />National Health Service Blood and Transplant, Oxford, UK
- />Radcliffe Department of Medicine, University of Oxford, John Radcliffe Hospital, Oxford, UK
| | - Asoke K Nandi
- />Department of Electronic and Computer Engineering, Brunel University, Uxbridge, Middlesex, UB8 3PH UK
- />Department of Mathematical Information Technology, University of Jyväskylä, Jyväskylä, Finland
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Circadian activation of the mitogen-activated protein kinase MAK-1 facilitates rhythms in clock-controlled genes in Neurospora crassa. EUKARYOTIC CELL 2012; 12:59-69. [PMID: 23125351 DOI: 10.1128/ec.00207-12] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The circadian clock regulates the expression of many genes involved in a wide range of biological functions through output pathways such as mitogen-activated protein kinase (MAPK) pathways. We demonstrate here that the clock regulates the phosphorylation, and thus activation, of the MAPKs MAK-1 and MAK-2 in the filamentous fungus Neurospora crassa. In this study, we identified genetic targets of the MAK-1 pathway, which is homologous to the cell wall integrity pathway in Saccharomyces cerevisiae and the extracellular signal-regulated kinase 1/2 (ERK1/2) pathway in mammals. When MAK-1 was deleted from Neurospora cells, vegetative growth was reduced and the transcript levels for over 500 genes were affected, with significant enrichment for genes involved in protein synthesis, biogenesis of cellular components, metabolism, energy production, and transcription. Additionally, of the ~500 genes affected by the disruption of MAK-1, more than 25% were previously identified as putative clock-controlled genes. We show that MAK-1 is necessary for robust rhythms of two morning-specific genes, i.e., ccg-1 and the mitochondrial phosphate carrier protein gene NCU07465. Additionally, we show clock regulation of a predicted chitin synthase gene, NCU04352, whose rhythmic accumulation is also dependent upon MAK-1. Together, these data establish a role for the MAK-1 pathway as an output pathway of the circadian clock and suggest a link between rhythmic MAK-1 activity and circadian control of cellular growth.
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Salgado A, López-Serrano Oliver A, Matia-González AM, Sotelo J, Zarco-Fernández S, Muñoz-Olivas R, Cámara C, Rodríguez-Gabriel MA. Response to arsenate treatment in Schizosaccharomyces pombe and the role of its arsenate reductase activity. PLoS One 2012; 7:e43208. [PMID: 22912829 PMCID: PMC3422283 DOI: 10.1371/journal.pone.0043208] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2012] [Accepted: 07/18/2012] [Indexed: 01/26/2023] Open
Abstract
Arsenic toxicity has been studied for a long time due to its effects in humans. Although epidemiological studies have demonstrated multiple effects in human physiology, there are many open questions about the cellular targets and the mechanisms of response to arsenic. Using the fission yeast Schizosaccharomyces pombe as model system, we have been able to demonstrate a strong activation of the MAPK Spc1/Sty1 in response to arsenate. This activation is dependent on Wis1 activation and Pyp2 phosphatase inactivation. Using arsenic speciation analysis we have also demonstrated the previously unknown capacity of S. pombe cells to reduce As (V) to As (III). Genetic analysis of several fission yeast mutants point towards the cell cycle phosphatase Cdc25 as a possible candidate to carry out this arsenate reductase activity. We propose that arsenate reduction and intracellular accumulation of arsenite are the key mechanisms of arsenate tolerance in fission yeast.
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Affiliation(s)
- Alejandro Salgado
- Centro de Biología Molecular “Severo Ochoa”, Universidad Autónoma de Madrid-Consejo Superior de Investigaciones Científicas, Madrid, Spain
| | - Ana López-Serrano Oliver
- Departamento de Química Analítica, Facultad de CC. Químicas, Universidad Complutense de Madrid, Madrid, Spain
| | - Ana M. Matia-González
- Centro de Biología Molecular “Severo Ochoa”, Universidad Autónoma de Madrid-Consejo Superior de Investigaciones Científicas, Madrid, Spain
| | - Jael Sotelo
- Centro de Biología Molecular “Severo Ochoa”, Universidad Autónoma de Madrid-Consejo Superior de Investigaciones Científicas, Madrid, Spain
| | - Sonia Zarco-Fernández
- Departamento de Química Analítica, Facultad de CC. Químicas, Universidad Complutense de Madrid, Madrid, Spain
| | - Riansares Muñoz-Olivas
- Departamento de Química Analítica, Facultad de CC. Químicas, Universidad Complutense de Madrid, Madrid, Spain
| | - Carmen Cámara
- Departamento de Química Analítica, Facultad de CC. Químicas, Universidad Complutense de Madrid, Madrid, Spain
| | - Miguel A. Rodríguez-Gabriel
- Centro de Biología Molecular “Severo Ochoa”, Universidad Autónoma de Madrid-Consejo Superior de Investigaciones Científicas, Madrid, Spain
- * E-mail:
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