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Maity S, Bhunia S, Drew MGB, Gomila RM, Frontera A, Chattopadhyay S. Formation of H-bonding networks in the solid state structure of a trinuclear cobalt(iii/ii/iii) complex with N 2O 2 donor Schiff base ligand and glutaric acid as bridging co-ligand: synthesis, structure and DFT study. RSC Adv 2024; 14:13200-13208. [PMID: 38655483 PMCID: PMC11037027 DOI: 10.1039/d3ra07697k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 04/09/2024] [Indexed: 04/26/2024] Open
Abstract
A trinuclear linear mixed-valence centrosymmetric cobalt(iii)-cobalt(ii)-cobalt(iii) complex, [CoII{(μ-L)(μ-Hglu)CoIII(OH2)}2](ClO4)2·6H2O has been synthesized during tetradentate N2O2 donor 'Schiff base' ligand, H2L {N,N'-bis(salicylidene)-1,3-diaminopropane} and glutaric acid (H2glu) as anionic co-ligand. The complex has been characterized by spectroscopic measurements and its solid state structure has been determined by single crystal X-ray diffraction analysis. The supra-molecular assembly formed by the hydrogen bonding interactions in the solid state of the complex has been analysed using DFT calculations.
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Affiliation(s)
- Sovana Maity
- Department of Chemistry, Jadavpur University Kolkata 700032 West Bengal India
| | - Sudip Bhunia
- Department of Chemistry, Jadavpur University Kolkata 700032 West Bengal India
| | - Michael G B Drew
- School of Chemistry, The University of Reading P.O. Box 224 Whiteknights Reading RG6 6AD UK
| | - Rosa M Gomila
- Departament de Química, Universitat de les Illes Balears Crta de valldemossa km 7.7 07122 Palma de Mallorca (Baleares) Spain
| | - Antonio Frontera
- Departament de Química, Universitat de les Illes Balears Crta de valldemossa km 7.7 07122 Palma de Mallorca (Baleares) Spain
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McDonald TR, Rizvi MF, Ruiter BL, Roy R, Reinders A, Ward JM. Posttranslational regulation of transporters important for symbiotic interactions. PLANT PHYSIOLOGY 2022; 188:941-954. [PMID: 34850211 PMCID: PMC8825328 DOI: 10.1093/plphys/kiab544] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Accepted: 10/27/2021] [Indexed: 05/20/2023]
Abstract
Coordinated sharing of nutritional resources is a central feature of symbiotic interactions, and, despite the importance of this topic, many questions remain concerning the identification, activity, and regulation of transporter proteins involved. Recent progress in obtaining genome and transcriptome sequences for symbiotic organisms provides a wealth of information on plant, fungal, and bacterial transporters that can be applied to these questions. In this update, we focus on legume-rhizobia and mycorrhizal symbioses and how transporters at the symbiotic interfaces can be regulated at the protein level. We point out areas where more research is needed and ways that an understanding of transporter mechanism and energetics can focus hypotheses. Protein phosphorylation is a predominant mechanism of posttranslational regulation of transporters in general and at the symbiotic interface specifically. Other mechanisms of transporter regulation, such as protein-protein interaction, including transporter multimerization, polar localization, and regulation by pH and membrane potential are also important at the symbiotic interface. Most of the transporters that function in the symbiotic interface are members of transporter families; we bring in relevant information on posttranslational regulation within transporter families to help generate hypotheses for transporter regulation at the symbiotic interface.
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Affiliation(s)
- Tami R McDonald
- Department of Biology, St Catherine University, St Paul, Minnesota, USA
| | - Madeeha F Rizvi
- Department of Plant and Microbial Biology, University of Minnesota, St. Paul, Minnesota, USA
| | - Bretton L Ruiter
- Department of Plant and Microbial Biology, University of Minnesota, St. Paul, Minnesota, USA
| | - Rahul Roy
- Department of Biology, St Catherine University, St Paul, Minnesota, USA
| | - Anke Reinders
- College of Continuing and Professional Studies, University of Minnesota, St. Paul, Minnesota, USA
| | - John M Ward
- Department of Plant and Microbial Biology, University of Minnesota, St. Paul, Minnesota, USA
- Author for communication:
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3
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Melton AE, Beck J, Galla SJ, Jenkins J, Handley L, Kim M, Grimwood J, Schmutz J, Richardson BA, Serpe M, Novak S, Buerki S. A draft genome provides hypotheses on drought tolerance in a keystone plant species in Western North America threatened by climate change. Ecol Evol 2021; 11:15417-15429. [PMID: 34765187 PMCID: PMC8571618 DOI: 10.1002/ece3.8245] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 08/12/2021] [Accepted: 10/01/2021] [Indexed: 11/17/2022] Open
Abstract
Climate change presents distinct ecological and physiological challenges to plants as extreme climate events become more common. Understanding how species have adapted to drought, especially ecologically important nonmodel organisms, will be crucial to elucidate potential biological pathways for drought adaptation and inform conservation strategies. To aid in genome-to-phenome research, a draft genome was assembled for a diploid individual of Artemisia tridentata subsp. tridentata, a threatened keystone shrub in western North America. While this taxon has few genetic resources available and genetic/genomics work has proven difficult due to genetic heterozygosity in the past, a draft genome was successfully assembled. Aquaporin (AQP) genes and their promoter sequences were mined from the draft genome to predict mechanisms regulating gene expression and generate hypotheses on key genes underpinning drought response. Fifty-one AQP genes were fully assembled within the draft genome. Promoter and phylogenetic analyses revealed putative duplicates of A. tridentata subsp. tridentata AQPs which have experienced differentiation in promoter elements, potentially supporting novel biological pathways. Comparison with nondrought-tolerant congener supports enrichments of AQP genes in this taxon during adaptation to drought stress. Differentiation of promoter elements revealed that paralogues of some genes have evolved to function in different pathways, highlighting these genes as potential candidates for future research and providing critical hypotheses for future genome-to-phenome work.
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Affiliation(s)
- Anthony E. Melton
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - James Beck
- Department of ComputingBoise State UniversityBoiseIdahoUSA
| | | | - Jerry Jenkins
- HudsonAlpha Institute for BiotechnologyHuntsvilleAlabamaUSA
| | - Lori Handley
- HudsonAlpha Institute for BiotechnologyHuntsvilleAlabamaUSA
| | - Min Kim
- HudsonAlpha Institute for BiotechnologyHuntsvilleAlabamaUSA
| | - Jane Grimwood
- HudsonAlpha Institute for BiotechnologyHuntsvilleAlabamaUSA
| | - Jeremy Schmutz
- HudsonAlpha Institute for BiotechnologyHuntsvilleAlabamaUSA
| | | | - Marcelo Serpe
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - Stephen Novak
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - Sven Buerki
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
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Fake It 'Till You Make It-The Pursuit of Suitable Membrane Mimetics for Membrane Protein Biophysics. Int J Mol Sci 2020; 22:ijms22010050. [PMID: 33374526 PMCID: PMC7793082 DOI: 10.3390/ijms22010050] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Revised: 12/17/2020] [Accepted: 12/19/2020] [Indexed: 12/13/2022] Open
Abstract
Membrane proteins evolved to reside in the hydrophobic lipid bilayers of cellular membranes. Therefore, membrane proteins bridge the different aqueous compartments separated by the membrane, and furthermore, dynamically interact with their surrounding lipid environment. The latter not only stabilizes membrane proteins, but directly impacts their folding, structure and function. In order to be characterized with biophysical and structural biological methods, membrane proteins are typically extracted and subsequently purified from their native lipid environment. This approach requires that lipid membranes are replaced by suitable surrogates, which ideally closely mimic the native bilayer, in order to maintain the membrane proteins structural and functional integrity. In this review, we survey the currently available membrane mimetic environments ranging from detergent micelles to bicelles, nanodiscs, lipidic-cubic phase (LCP), liposomes, and polymersomes. We discuss their respective advantages and disadvantages as well as their suitability for downstream biophysical and structural characterization. Finally, we take a look at ongoing methodological developments, which aim for direct in-situ characterization of membrane proteins within native membranes instead of relying on membrane mimetics.
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Hall JE, Freites JA, Tobias DJ. Experimental and Simulation Studies of Aquaporin 0 Water Permeability and Regulation. Chem Rev 2019; 119:6015-6039. [PMID: 31026155 DOI: 10.1021/acs.chemrev.9b00106] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
We begin with the history of aquaporin zero (AQP0), the most prevalent membrane protein in the eye lens, from the early days when AQP0 was a protein of unknown function known as Major Intrinsic Protein 26. We progress through its joining the aquaporin family as a water channel in its own right and discuss how regulation of its water permeability by pH and calcium came to be discovered experimentally and linked to lens homeostasis and development. We review the development of molecular dynamics (MD) simulations of lipid bilayers and membrane proteins, including aquaporins, with an emphasis on simulation studies that have elucidated the mechanisms of water conduction, selectivity, and proton exclusion by aquaporins in general. We also review experimental and theoretical progress toward understanding why mammalian AQP0 has a lower water permeability than other aquaporins and the evolution of our present understanding of how its water permeability is regulated by pH and calcium. Finally, we discuss how MD simulations have elucidated the nature of lipid interactions with AQP0.
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Song W, Tu YM, Oh H, Samineni L, Kumar M. Hierarchical Optimization of High-Performance Biomimetic and Bioinspired Membranes. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:589-607. [PMID: 30577695 DOI: 10.1021/acs.langmuir.8b03655] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Biomimetic and bioinspired membranes have emerged as an innovative platform for water purification and aqueous separations. They are inspired by the exceptional water permeability (∼109 water molecules per second per channel) and perfect selectivity of biological water channels, aquaporins. However, only few successes have been reported for channel-based membrane fabrication due to inherent challenges of realizing coherence between channel design at the angstrom level and development of scalable membranes that maintain these molecular properties at practice-relevant scales. In this article, we feature recent progress toward practical biomimetic membranes, with the review organized along a hierarchical structural perspective that biomimetic membranes commonly share. These structures range from unitary pore shapes and tubular hydrophobic channel geometries to self-assembled bilayer structures and finally to macroscale membranes covering a size range from the angstrom, to the micrometer scale, and finally to the centimeter and larger scales. To maximize the advantage of water channel implementation into membranes, each feature needs to be optimized in an appropriate manner that provides a path to successful scale-up to achieve high performance in practical biomimetic and bioinspired membranes.
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Predicting Alpha Helical Transmembrane Proteins Using HMMs. Methods Mol Biol 2018; 1552:63-82. [PMID: 28224491 DOI: 10.1007/978-1-4939-6753-7_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
Abstract
Alpha helical transmembrane (TM) proteins constitute an important structural class of membrane proteins involved in a wide variety of cellular functions. The prediction of their transmembrane topology, as well as their discrimination in newly sequenced genomes, is of great importance for the elucidation of their structure and function. Several methods have been applied for the prediction of the transmembrane segments and the topology of alpha helical transmembrane proteins utilizing different algorithmic techniques. Hidden Markov Models (HMMs) have been efficiently used in the development of several computational methods used for this task. In this chapter we give a brief review of different available prediction methods for alpha helical transmembrane proteins pointing out sequence and structural features that should be incorporated in a prediction method. We then describe the procedure of the design and development of a Hidden Markov Model capable of predicting the transmembrane alpha helices in proteins and discriminating them from globular proteins.
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8
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Abstract
Symmetry is a common feature among natural systems, including protein structures. A strong propensity toward symmetric architectures has long been recognized for water-soluble proteins, and this propensity has been rationalized from an evolutionary standpoint. Proteins residing in cellular membranes, however, have traditionally been less amenable to structural studies, and thus the prevalence and significance of symmetry in this important class of molecules is not as well understood. In the past two decades, researchers have made great strides in this area, and these advances have provided exciting insights into the range of architectures adopted by membrane proteins. These structural studies have revealed a similarly strong bias toward symmetric arrangements, which were often unexpected and which occurred despite the restrictions imposed by the membrane environment on the possible symmetry groups. Moreover, membrane proteins disproportionately contain internal structural repeats resulting from duplication and fusion of smaller segments. This article discusses the types and origins of symmetry in membrane proteins and the implications of symmetry for protein function.
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Affiliation(s)
- Lucy R Forrest
- Computational Structural Biology Group, Porter Neuroscience Center, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Maryland 20852;
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Madeira A, Moura TF, Soveral G. Aquaglyceroporins: implications in adipose biology and obesity. Cell Mol Life Sci 2015; 72:759-71. [PMID: 25359234 PMCID: PMC11113391 DOI: 10.1007/s00018-014-1773-2] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2014] [Revised: 10/07/2014] [Accepted: 10/27/2014] [Indexed: 01/19/2023]
Abstract
Aquaporins (AQPs) are membrane water/glycerol channels that are involved in many physiological processes. Their primary function is to facilitate the bidirectional transfer of water and small solutes across biological membranes in response to osmotic gradients. Aquaglyceroporins, a subset of the AQP family, are the only mammalian proteins with the ability to permeate glycerol. For a long time, AQP7 has been the only aquaglyceroporin associated with the adipose tissue, which is the major source of circulating glycerol in response to the energy demand. AQP7 dysregulation was positively correlated with obesity onset and adipocyte glycerol permeation through AQP7 was appointed as a novel regulator of adipocyte metabolism and whole-body fat mass. Recently, AQP3, AQP9, AQP10 and AQP11 were additionally identified in human adipocytes and proposed as additional glycerol pathways in these cells. This review contextualizes the importance of aquaglyceroporins in adipose tissue biology and highlights aquaglyceroporins' unique structural features which are relevant for the design of effective therapeutic compounds. We also refer to the latest advances in the identification and characterization of novel aquaporin isoforms in adipose tissue. Finally, considerations on the actual progress of aquaporin research and its implications on obesity therapy are suggested.
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Affiliation(s)
- Ana Madeira
- Research Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, Av. Prof. Gama Pinto, Lisbon, 1649-003 Portugal
- Department of Bioquimica e Biologia Humana, Faculty of Pharmacy, Universidade de Lisboa, Lisbon, Portugal
| | - Teresa F. Moura
- Research Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, Av. Prof. Gama Pinto, Lisbon, 1649-003 Portugal
- FCT-UNL, 2829-516 Caparica, Portugal
| | - Graça Soveral
- Research Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, Av. Prof. Gama Pinto, Lisbon, 1649-003 Portugal
- Department of Bioquimica e Biologia Humana, Faculty of Pharmacy, Universidade de Lisboa, Lisbon, Portugal
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10
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Hagiwara K, Otsuki M, Akita M, Yoshizawa M. Polyaromatic molecular tubes with a subnanometer pore and the guest-induced emission enhancement behavior. Chem Commun (Camb) 2015; 51:10451-4. [DOI: 10.1039/c5cc02931g] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
New polyaromatic molecular tubes with a subnanometer pore (0.8 nm) can bind one molecule of hydrocarbon guests in water with accompanying guest-induced emission enhancement (up to ∼3 times).
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Affiliation(s)
- Keita Hagiwara
- Chemical Resources Laboratory
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
| | - Masafumi Otsuki
- Chemical Resources Laboratory
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
| | - Munetaka Akita
- Chemical Resources Laboratory
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
| | - Michito Yoshizawa
- Chemical Resources Laboratory
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
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11
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Bhattacharyya A, Harms K, Chattopadhyay S. Formation of T4(1) water tapes interconnected via centrosymmetric nickel(II) Schiff base complex to produce a 3D architecture. INORG CHEM COMMUN 2014. [DOI: 10.1016/j.inoche.2014.07.029] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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12
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Jang HY, Rhee J, Carlson JE, Ahn SJ. The Camelina aquaporin CsPIP2;1 is regulated by phosphorylation at Ser273, but not at Ser277, of the C-terminus and is involved in salt- and drought-stress responses. JOURNAL OF PLANT PHYSIOLOGY 2014; 171:1401-12. [PMID: 25046761 DOI: 10.1016/j.jplph.2014.06.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2014] [Revised: 06/28/2014] [Accepted: 06/28/2014] [Indexed: 05/08/2023]
Abstract
Aquaporin (AQP) proteins are involved in water homeostasis in cells at all taxonomic levels of life. Phosphorylation of some AQPs has been proposed to regulate water permeability via gating of the channel itself. We analyzed plasma membrane intrinsic proteins (PIP) from Camelina and characterized their biological functions under both stressful and favorable conditions. A three-dimensional theoretical model of the Camelina AQP proteins was built by homology modeling which could prove useful in further functional characterization of AQPs. CsPIP2;1 was strongly and constitutively expressed in roots and leaves of Camelina, suggesting that this gene is related to maintenance of homeostasis during salt and drought stresses. CsPIP2s exhibited water channel activity in Xenopus oocytes. We then examined the roles of CsPIP2;1 phosphorylation at Ser273 and Ser277 in the regulation of water permeability using phosphorylation mutants. A single deletion strain of CsPIP2;1 was generated to serve as the primary host for testing AQP expression constructs. A Ser277 to alanine mutation (to prevent phosphorylation) did not change CsPIP2;1 water permeability while a Ser273 mutation to alanine did affect water permeability. Furthermore, a CsPIP2;1 point mutation when ectopically expressed in yeast resulted in lower growth in salt and drought conditions compared with controls, and confirmation of Ser273 as the phosphorylation site. Our results support the idea that post-translational modifications in the Ser273 regulatory domains of the C-terminus fine tune water flux through CsPIP2;1.
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Affiliation(s)
- Ha-Young Jang
- Department of Bioenergy Science and Technology, Chonnam National University, Gwangju 500-757, Republic of Korea
| | - Jiye Rhee
- Department of Experimental Plant Biology, Faculty of Science, University of South Bohemia, Branisovska 31, Ceske Budejovice, Czech Republic
| | - John E Carlson
- Department of Bioenergy Science and Technology, Chonnam National University, Gwangju 500-757, Republic of Korea; Department of Ecosystem Science and Management, Pennsylvania State University, University Park, PA 16802, USA
| | - Sung-Ju Ahn
- Department of Bioenergy Science and Technology, Chonnam National University, Gwangju 500-757, Republic of Korea.
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14
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Parasite aquaporins: Current developments in drug facilitation and resistance. Biochim Biophys Acta Gen Subj 2014; 1840:1566-73. [DOI: 10.1016/j.bbagen.2013.10.014] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2013] [Revised: 10/02/2013] [Accepted: 10/06/2013] [Indexed: 01/15/2023]
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15
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Qiblawi SH, LaDuca RL. Control of water molecule aggregations in copper 1,4-cyclohexanedicarboxylate coordination polymers containing pyridyl–piperazine type ligands. J Mol Struct 2014. [DOI: 10.1016/j.molstruc.2013.10.073] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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16
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Unusual self-assembled 1D tape of tetramers and water–nitrate clusters trapped in a zinc(II) complex: Synthesis, characterization, luminescence and catalytic properties. J Mol Struct 2013. [DOI: 10.1016/j.molstruc.2013.09.029] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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17
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Hildebrandt ER, Davis DM, Deaton J, Krishnankutty RK, Lilla E, Schmidt WK. Topology of the yeast Ras converting enzyme as inferred from cysteine accessibility studies. Biochemistry 2013; 52:6601-14. [PMID: 23972033 DOI: 10.1021/bi400647c] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
The Ras converting enzyme (Rce1p) is an endoprotease that is involved in the post-translational processing of the Ras GTPases and other isoprenylated proteins. Its role in Ras biosynthesis marks Rce1p as an anticancer target. By assessing the chemical accessibility of cysteine residues substituted throughout the Saccharomyces cerevisiae Rce1p sequence, we have determined that yeast Rce1p has eight segments that are protected from chemical modification. Notably, the three residues that are essential for yeast Rce1p function (E156, H194, and H248) are all chemically inaccessible and associated with separate protected segments. By specifically assessing the chemical reactivity and glycosylation potential of the NH2 and COOH termini of Rce1p, we further demonstrate that Rce1p has an odd number of transmembrane spans. Substantial evidence that the most NH2-terminal segment functions as a transmembrane segment with the extreme NH2 terminus projecting into the endoplasmic reticulum (ER) lumen is presented. Because each of the remaining seven segments is too short to contain two spans and is flanked by chemically reactive positions, we infer that these segments are not transmembrane segments but rather represent compact structural features and/or hydrophobic loops that penetrate but do not fully span the bilayer (i.e., re-entrant helices). We thus propose a topological model in which yeast Rce1p contains a single transmembrane helix localized at its extreme NH2 terminus and one or more re-entrant helices and/or compact structural domains that populate the cytosolic face of the ER membrane. Lastly, we demonstrate that the natural cysteine residues of Rce1p are chemically inaccessible and fully dispensable for in vivo enzyme activity, formally eliminating the possibility of a cysteine-based enzymatic mechanism for this protease.
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Affiliation(s)
- Emily R Hildebrandt
- Department of Biochemistry and Molecular Biology, The University of Georgia , Athens, Georgia 30602, United States
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Kole GK, Peedikakkal AMP, Toh BMF, Vittal JJ. Solid-State Structural Transformations and Photoreactivity of 1D-Ladder Coordination Polymers of PbII. Chemistry 2013; 19:3962-8. [DOI: 10.1002/chem.201203678] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2012] [Indexed: 11/11/2022]
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19
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20
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Ngoune J, Di Nicolas C, Nenwa J, Pettinari C, Alvarez E, Ponou S. A supramolecular copper(II) compound with double bridging water ligands: synthesis, crystal structure, spectroscopy, thermal analysis, and magnetism. TRANSIT METAL CHEM 2012. [DOI: 10.1007/s11243-012-9656-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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21
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Siddiqui KA. 1-D Hydrogen bonded water in Cu(II)-picolinate coordination polymer: synthesis, crystal structure, and thermogravimetric analysis. J COORD CHEM 2012. [DOI: 10.1080/00958972.2012.736618] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Kafeel Ahmad Siddiqui
- a Solid State and Structural Chemistry Unit, Indian Institute of Science , C.V. Raman Avenue, Bangalore 560 012 , Karnataka , India
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22
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Zhao QH, Chen J, Zhu RM, Li MZ, Dai JC, Luo GG. Acyclic water tetramer and discrete (H2O)28 cluster with a novel topknot-shaped (H2O)24 cluster coexist in the voids of a Ag(I) polymeric solid. INORG CHEM COMMUN 2012. [DOI: 10.1016/j.inoche.2012.06.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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23
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Müller SA, Engel A. Looking back at a quarter-century of research at the Maurice E. Müller Institute for Structural Biology. J Struct Biol 2011; 177:3-13. [PMID: 22115996 DOI: 10.1016/j.jsb.2011.11.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2011] [Revised: 11/04/2011] [Accepted: 11/05/2011] [Indexed: 10/15/2022]
Abstract
The Maurice E. Müller Institute, embedded in the infrastructure of the Biozentrum, University of Basel, was founded in 1985 and financed by the Maurice E. Müller Foundation of Switzerland. For 26 years its two founders, Ueli Aebi and Andreas Engel, pursued the vision of integrated structural biology. This paper reviews selected publications issuing from the Maurice E. Müller Institute for Structural Biology and marks the end of this era.
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Affiliation(s)
- Shirley A Müller
- Center for Cellular Imaging and Nano Analytics, Biozentrum, University of Basel, Mattenstrasse 26, CH-4058 Basel, Switzerland
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Chakraborty B, Paine TK. Synthesis and characterization of cobalt(II)–salicylate complexes derived from N4-donor ligands: Stabilization of a hexameric water cluster in the lattice host of a cobalt(III)–salicylate complex. Inorganica Chim Acta 2011. [DOI: 10.1016/j.ica.2011.09.008] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Sahoo SC, Kundu T, Banerjee R. Helical Water Chain Mediated Proton Conductivity in Homochiral Metal–Organic Frameworks with Unprecedented Zeolitic unh-Topology. J Am Chem Soc 2011; 133:17950-8. [DOI: 10.1021/ja2078637] [Citation(s) in RCA: 333] [Impact Index Per Article: 25.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Subash Chandra Sahoo
- Physical/Materials Chemistry Division, National Chemical Laboratory, Dr. Homi Bhabha Road, Pune 411008, India
| | - Tanay Kundu
- Physical/Materials Chemistry Division, National Chemical Laboratory, Dr. Homi Bhabha Road, Pune 411008, India
| | - Rahul Banerjee
- Physical/Materials Chemistry Division, National Chemical Laboratory, Dr. Homi Bhabha Road, Pune 411008, India
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A layered copper/bis(4-pyridylformyl)piperazine coordination polymer with cyclic water molecule octamers and reversible structural reorganization. INORG CHEM COMMUN 2011. [DOI: 10.1016/j.inoche.2011.02.012] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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27
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Hachez C, Chaumont F. Aquaporins: a family of highly regulated multifunctional channels. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2010; 679:1-17. [PMID: 20666220 DOI: 10.1007/978-1-4419-6315-4_1] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Aquaporins (AQPs) were discovered as channels facilitatingwater movement across cellular membranes. Whereas much of the research has focused on characterizing AQPs with respect to cell water homeostasis, recent discoveries in terms of the transport selectivity of AQP homologs has shed new light on their physiological roles. In fact, whereas some AQPs behave as "strict" water channels, others can conduct a wide range ofnonpolar solutes, such as urea or glycerol and even more unconventional permeants, such as the nonpolar gases carbon dioxide and nitric oxide, the polar gas ammonia, the reactive oxygen species hydrogen peroxide and the metalloids antimonite, arsenite, boron and silicon. This suggests that AQPs are also key players in various physiological processes not related to water homeostasis. The function, regulation and biological importance of AQPs in the different kingdoms is reviewed in this chapter, with special emphasis on animal and plant AQPs.
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Affiliation(s)
- Charles Hachez
- Institut des Sciences de la Vie, Universit4 catholique de Louvain, Croix du Sud 5-15, B-1348 Louvain-la-Neuve, Belgium
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28
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Basu T, Mondal R. Construction of first anion-assisted helix inside a helix network. CrystEngComm 2010. [DOI: 10.1039/b919235m] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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29
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Hazra A, Kanoo P, Mohapatra S, Mostafa G, Maji TK. A flexible supramolecular host with a crowned chair octameric water cluster and highly selective adsorption properties. CrystEngComm 2010. [DOI: 10.1039/b924511a] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Shelden MC, Howitt SM, Kaiser BN, Tyerman SD. Identification and functional characterisation of aquaporins in the grapevine, Vitis vinifera. FUNCTIONAL PLANT BIOLOGY : FPB 2010; 36:1065-1078. [PMID: 32688718 DOI: 10.1071/fp09117] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2009] [Accepted: 07/28/2009] [Indexed: 05/10/2023]
Abstract
Plant aquaporins belong to a large superfamily of conserved proteins called the major intrinsic proteins (MIPs). There is limited information about the diversity of MIPs in grapevine, and their water transport capacity. The aim of the present study was to identify MIPs from grapevine and functionally characterise water transport of a subset of MIPs. Candidate genes were identified, by screening a Vitis vinifera L. (cv. Cabernet Sauvignon) cDNA library with gene specific probes, for aquaporin cDNAs encoding members of the plasma membrane intrinsic protein (PIP) and tonoplast intrinsic protein (TIP) subfamilies. The screen resulted in the identification of 11 full-length and two partial length aquaporin cDNAs. VvTIP2;1 isoforms had different 3' UTRs, immediately upstream of the poly(A) tail, suggesting the presence of multiple cleavage sites for polyadenylation. Using published genome sequences of grapevine, we conducted a phylogenetic analysis of the MIPs with previously characterised MIPs from Arabidopsis. We identified 23 full-length MIP genes from the V. vinifera genome sequence of a near homozygous line (PN40024) that cluster into the four main subfamilies (and subgroups within) identified in other species. However, based on the identification of PIP2 genes in Cabernet Sauvignon that were not present in the PN40024 genome, there are likely to be more than 23 MIP genes in other heterozygous grapevine cultivars. Water transport capacity was determined for several PIPs and TIPs, by expression in Xenopus oocytes. Only VvPIP2 and VvTIP proteins function as water channels with the exception of VvPIP2;5. VvPIP2;5 differs from the water conducting VvPIP2;1 by the substitution of two highly conserved amino acids in Loop B (G97S, G100W), which was shown by homology modelling to likely form a hydrophobic block of the water pore.
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Affiliation(s)
- Megan C Shelden
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA 5064, Australia
| | - Susan M Howitt
- Biochemistry and Molecular Biology, Research School of Biology, Australian National University, Canberra, ACT 0200, Australia
| | - Brent N Kaiser
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA 5064, Australia
| | - Stephen D Tyerman
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA 5064, Australia
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Schenk AD, Hite RK, Engel A, Fujiyoshi Y, Walz T. Electron crystallography and aquaporins. Methods Enzymol 2010; 483:91-119. [PMID: 20888471 DOI: 10.1016/s0076-6879(10)83005-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Electron crystallography of two-dimensional (2D) crystals can provide information on the structure of membrane proteins at near-atomic resolution. Originally developed and used to determine the structure of bacteriorhodopsin (bR), electron crystallography has recently been applied to elucidate the structure of aquaporins (AQPs), a family of membrane proteins that form pores mostly for water but also other solutes. While electron crystallography has made major contributions to our understanding of the structure and function of AQPs, structural studies on AQPs, in turn, have fostered a number of technical developments in electron crystallography. In this contribution, we summarize the insights electron crystallography has provided into the biology of AQPs, and describe technical advancements in electron crystallography that were driven by structural studies on AQP 2D crystals. In addition, we discuss some of the lessons that were learned from electron crystallographic work on AQPs.
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Affiliation(s)
- Andreas D Schenk
- Department of Cell Biology, Harvard Medical School, Boston, Massachusetts, USA
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32
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WU WZ, PENG XL, WANG D. Isolation of a Plasmalemma Aquaporin Encoding Gene StPIP1 from Solanum tuberosum L. and Its Expression in Transgenic Tobacco. ACTA ACUST UNITED AC 2009. [DOI: 10.1016/s1671-2927(08)60326-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Chepelinsky AB. Structural function of MIP/aquaporin 0 in the eye lens; genetic defects lead to congenital inherited cataracts. Handb Exp Pharmacol 2008:265-97. [PMID: 19096783 DOI: 10.1007/978-3-540-79885-9_14] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
Aquaporin 0 (AQP0) was originally characterized as a membrane intrinsic protein, specifically expressed in the lens fibers of the ocular lens and designated MIP, for major intrinsic protein of the lens. Once the gene was cloned, an internal repeat was identified, encoding for the amino acids Asp-Pro-Ala, the NPA repeat. Shortly, the MIP gene family was emerging, with members being characterized in mammals, insects, and plants. Once Peter Agre's laboratory developed a functional assay for water channels, the MIP family became the aquaporin family and MIP became known as aquaporin 0. Besides functioning as a water channel, aquaporin 0 also plays a structural role, being required for maintaining the transparency and optical accommodation of the ocular lens. Mutations in the AQP0 gene in human and mice result in genetic cataracts; deletion of the MIP/AQP0 gene in mice results in lack of suture formation required for maintenance of the lens fiber architecture, resulting in perturbed accommodation and focus properties of the ocular lens. Crystallography studies support the notion of the double function of aquaporin 0 as a water channel (open configuration) or adhesion molecule (closed configuration) in the ocular lens fibers. The functions of MIP/AQP0, both as a water channel and an adhesive molecule in the lens fibers, contribute to the narrow intercellular space of the lens fibers that is required for lens transparency and accommodation.
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Affiliation(s)
- Ana B Chepelinsky
- National Institutes of Health, National Eye Institute, Bldg. 31, Room 6A-32, Bethesda, MD, 20892-2510, USA.
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Abstract
Progress in the structure determination of AQPs has led to a deep understanding of water and solute permeation by these small integral membrane proteins. The atomic structures now available have allowed the water permeation and exclusion of protons to be monitored by molecular dynamics simulations, and have provided a framework for assessing the water and solute permeation in great detail by site-directed mutations. In spite of this, further structural and molecular dynamics analyses are required to elucidate the basis for regulation as well as for gas permeation, processes that are still to be deciphered.
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Affiliation(s)
- Thomas Walz
- Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA
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Beckmann J, Duthie A, Rüttinger R, Schwich T. Bis(3-endo-camphoryl)phosphinic Acid, a Non-Racemic Helical Supramolecular Host with Aquapores. Z Anorg Allg Chem 2008. [DOI: 10.1002/zaac.200800192] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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36
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Knapp WR, Supkowski RM, LaDuca RL. Synthesis and structure of a copper sulfate/kinked organodiimine coordination polymer entraining “infinite” decorated water chains with C14 classification. INORG CHEM COMMUN 2008. [DOI: 10.1016/j.inoche.2008.08.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Siddiqui KA, Mehrotra GK, Mrozinski J, Butcher RJ. H-Bonded Porous Supramolecular Network of a CuIIComplex Assisted by Assembled 2D Sheet of Chair Form Hexameric Water Cluster. Eur J Inorg Chem 2008. [DOI: 10.1002/ejic.200800463] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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38
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Tchekneva EE, Khuchua Z, Davis LS, Kadkina V, Dunn SR, Bachman S, Ishibashi K, Rinchik EM, Harris RC, Dikov MM, Breyer MD. Single amino acid substitution in aquaporin 11 causes renal failure. J Am Soc Nephrol 2008; 19:1955-64. [PMID: 18701606 DOI: 10.1681/asn.2008030296] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
Abstract
A screen of recessive mutations generated by the chemical mutagen n-ethyl-n-nitrosourea (ENU) mapped a new mutant locus (5772SB) termed sudden juvenile death syndrome (sjds) to chromosome 7 in mice. These mutant mice, which exhibit severe proximal tubule injury and formation of giant vacuoles in the renal cortex, die from renal failure, a phenotype that resembles aquaporin 11 (Aqp11) knockout mice. In this report, the ENU-induced single-nucleotide variant (sjds mutation) is identified. To determine whether this variant, which causes an amino acid substitution (Cys227Ser) in the predicted E-loop region of aquaporin 11, is responsible for the sjds lethal renal phenotype, Aqp11-/sjds compound heterozygous mice were generated from Aqp11 +/sjds and Aqp11 +/- intercrosses. The compound heterozygous Aqp11 -/sjds offspring exhibited a lethal renal phenotype (renal failure by 2 wk), similar to the Aqp11 sjds/sjds and Aqp11-/- phenotypes. These results demonstrate that the identified mutation causes renal failure in Aqp11 sjds/sjds mutant mice, providing a model for better understanding of the structure and function of aquaporin 11 in renal physiology.
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Affiliation(s)
- Elena E Tchekneva
- Division of Nephrology, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
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39
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Invertebrate aquaporins: a review. J Comp Physiol B 2008; 178:935-55. [DOI: 10.1007/s00360-008-0288-2] [Citation(s) in RCA: 113] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2008] [Revised: 06/03/2008] [Accepted: 06/10/2008] [Indexed: 10/25/2022]
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Parisi M, Dorr RA, Ozu M, Toriano R. From membrane pores to aquaporins: 50 years measuring water fluxes. J Biol Phys 2008; 33:331-43. [PMID: 19669522 DOI: 10.1007/s10867-008-9064-5] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2007] [Accepted: 03/13/2008] [Indexed: 12/01/2022] Open
Abstract
This review focuses on studies of water movement across biological membranes performed over the last 50 years. Different scientific approaches had tried to elucidate such intriguing mechanism, from hypotheses emphasizing the role of the lipid bilayer to the cloning of aquaporins, the ubiquitous proteins described as specific water channels. Pioneering and clarifying biophysical work are reviewed beside results obtained with the help of recent sophisticated techniques, to conclude that great advances in the subject live together with old questions without definitive answers.
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Affiliation(s)
- Mario Parisi
- Unidad de Biomembranas, Universidad Favaloro, Buenos Aires, Argentina
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41
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Saylor SM, Supkowski RM, LaDuca RL. Coordination geometry induced control of channel morphology in divalent metal pyridinedicarboxylate coordination polymers containing a kinked tethering organodiimine. Inorganica Chim Acta 2008. [DOI: 10.1016/j.ica.2007.07.035] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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42
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Guha S, Drew MG, Banerjee A. Formation of a one-dimensional helical alignment of water molecules within a water-mediated supramolecular helix using molecular self-assembly of a water-soluble short pseudopeptide. Tetrahedron Lett 2006. [DOI: 10.1016/j.tetlet.2006.08.132] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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43
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Xia CK, Lu CZ, Wu XY, Chen LJ, Zhang QZ, Zhang JJ, Wu DM. Unusual hexamers and infinite water chains trapped in the complexes of 2-(4-pyridyl)benzimidazole. Inorganica Chim Acta 2006. [DOI: 10.1016/j.ica.2006.07.014] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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44
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Supramolecularly assembled pentameric and octameric water clusters stabilized by a mixed complex of Ni(II). Inorganica Chim Acta 2006. [DOI: 10.1016/j.ica.2005.12.071] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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45
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Fleishman SJ, Unger VM, Ben-Tal N. Transmembrane protein structures without X-rays. Trends Biochem Sci 2006; 31:106-13. [PMID: 16406532 DOI: 10.1016/j.tibs.2005.12.005] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2005] [Revised: 11/14/2005] [Accepted: 12/20/2005] [Indexed: 10/25/2022]
Abstract
Transmembrane (TM) proteins constitute 15-30% of the genome, but <1% of the structures in the Protein Data Bank. This discrepancy is disturbing, and emphasizes that structure determination of TM proteins remains challenging. The challenge is greatest for proteins from eukaryotes, the structures of which remain intractable despite tremendous advances that have been made towards structure determination of bacterial TM proteins. Notably, >50% of the membrane protein families in eukaryotes lack bacterial homologs. Therefore, it is conceivable that many more years will elapse before high-resolution structures of eukaryotic TM proteins emerge. Until then, integrated approaches that combine biochemical and computational analyses with low-resolution structures are likely to have increasingly important roles in providing frameworks for the mechanistic understanding of membrane-protein structure and function.
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Affiliation(s)
- Sarel J Fleishman
- Department of Biochemistry, George S. Wise Faculty of Life Sciences, Tel-Aviv University, Ramat Aviv 69978, Israel
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46
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Mei X, Wolf C. Conformational polymorphism of 1,8-dipyridylnaphthalene and encapsulation of chains of fused cyclic water pentamers in a hydrophobic crystal environment. CrystEngComm 2006. [DOI: 10.1039/b603306g] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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47
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Ghosh SK, Bharadwaj PK. Infinite Chains of Quasi-Planar Hexameric Water Clusters Stabilized in a Metal-Organic Framework Built from CoII and Pyrazine- 2,3,5,6-tetracarboxylic Acid. Eur J Inorg Chem 2005. [DOI: 10.1002/ejic.200500670] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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48
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Ghosh SK, Bharadwaj PK. Metal−Organic Framework H-Bonded Like a Polycatenane: Coexistence of Acyclic Water Trimer and Nonamer. Inorg Chem 2005; 44:5553-5. [PMID: 16060602 DOI: 10.1021/ic050727u] [Citation(s) in RCA: 82] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Pyridine-2,6-dicarboxylic acid and 1,2-di-4-pyridylethylene react hydrothermally with nickel(II) nitrate, forming a metal-organic framework that forms a polycatenane-like structure through H-bonding interactions between water molecules and carboxylate O atoms with void spaces. Discrete acyclic trimeric and nonameric water clusters occupy the voids in the structures. X-ray powder diffraction and X-ray structure analysis have been used to characterize this compound. Crystal data for 1 {(3dpeH(2))[Ni(pdc)(2)](3).15H(2)O}: monoclinic space group P2(1)/c, a = 24.730(5) Angstroms, b = 19.895(2) Angstroms, c = 17.257(4) Angstroms, beta = 104.832(5) degrees, V = 8208(4) Angstroms(3), Z = 4, R1 = 0.0429, wR2 = 0.1072, and S = 1.051.
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Affiliation(s)
- Sujit K Ghosh
- Chemistry Department, Indian Institute of Technology, Kanpur
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49
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Neogi S, Bharadwaj PK. An Infinite Water Chain Passes through an Array of Zn(II) Metallocycles Built with a Podand Bearing Terminal Carboxylates. Inorg Chem 2005; 44:816-8. [PMID: 15859250 DOI: 10.1021/ic048489a] [Citation(s) in RCA: 83] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A podand bearing three carboxylic acid groups was synthesized by condensation of tris(2-chloroethyl)amine with 4-hydroxyethylbenzoate followed by hydrolysis of the ester group. An aqueous solution of Zn(NO3)2 x 6H2O reacts with the tetraethylammonium salt of the podand at room temperature, to form a porous coordination polymeric structure with infinite interlinked chains of Zn(II) metallocycles. An infinite water chain passes through the metallocycles like a thread. The compound was characterized by X-ray crystallography, X-ray powder diffraction, TGA, IR spectroscopy, and elemental analysis.
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Affiliation(s)
- Subhadip Neogi
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, India
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Kim HJ, Jo HJ, Kim J, Kim SY, Kim D, Kim K. Supramolecular self-assembly of tin(iv) porphyrin channels stabilizing single-file chains of water molecules. CrystEngComm 2005. [DOI: 10.1039/b504841a] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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