1
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Bournonville C, Mori K, Deslous P, Decros G, Blomeier T, Mauxion JP, Jorly J, Gadin S, Cassan C, Maucourt M, Just D, Brès C, Rothan C, Ferrand C, Fernandez-Lochu L, Bataille L, Miura K, Beven L, Zurbriggen MD, Pétriacq P, Gibon Y, Baldet P. Blue light promotes ascorbate synthesis by deactivating the PAS/LOV photoreceptor that inhibits GDP-L-galactose phosphorylase. THE PLANT CELL 2023; 35:2615-2634. [PMID: 37052931 PMCID: PMC10291033 DOI: 10.1093/plcell/koad108] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Revised: 02/14/2023] [Accepted: 03/15/2023] [Indexed: 06/19/2023]
Abstract
Ascorbate (vitamin C) is an essential antioxidant in fresh fruits and vegetables. To gain insight into the regulation of ascorbate metabolism in plants, we studied mutant tomato plants (Solanum lycopersicum) that produce ascorbate-enriched fruits. The causal mutation, identified by a mapping-by-sequencing strategy, corresponded to a knock-out recessive mutation in a class of photoreceptor named PAS/LOV protein (PLP), which acts as a negative regulator of ascorbate biosynthesis. This trait was confirmed by CRISPR/Cas9 gene editing and further found in all plant organs, including fruit that accumulated 2 to 3 times more ascorbate than in the WT. The functional characterization revealed that PLP interacted with the 2 isoforms of GDP-L-galactose phosphorylase (GGP), known as the controlling step of the L-galactose pathway of ascorbate synthesis. The interaction with GGP occurred in the cytoplasm and the nucleus, but was abolished when PLP was truncated. These results were confirmed by a synthetic approach using an animal cell system, which additionally demonstrated that blue light modulated the PLP-GGP interaction. Assays performed in vitro with heterologously expressed GGP and PLP showed that PLP is a noncompetitive inhibitor of GGP that is inactivated after blue light exposure. This discovery provides a greater understanding of the light-dependent regulation of ascorbate metabolism in plants.
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Affiliation(s)
- Céline Bournonville
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Kentaro Mori
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Paul Deslous
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Guillaume Decros
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Tim Blomeier
- Institute of Synthetic Biology—CEPLAS—Faculty of Mathematics and Natural Sciences, Heinrich-Heine-Universität Düsseldorf, Dusseldorf 40225, Germany
| | - Jean-Philippe Mauxion
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Joana Jorly
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Stéphanie Gadin
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Cédric Cassan
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Mickael Maucourt
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Daniel Just
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Cécile Brès
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Christophe Rothan
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Carine Ferrand
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Lucie Fernandez-Lochu
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Laure Bataille
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Kenji Miura
- Tsukuba Innovation Plant Research Center, University of Tsukuba, 1-1-1 Tennodai, 305-8577 Ibaraki, Tsukuba, Japan
| | - Laure Beven
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Matias D Zurbriggen
- Institute of Synthetic Biology—CEPLAS—Faculty of Mathematics and Natural Sciences, Heinrich-Heine-Universität Düsseldorf, Dusseldorf 40225, Germany
| | - Pierre Pétriacq
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Yves Gibon
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
| | - Pierre Baldet
- UMR 1332 Biologie du Fruit et Pathologie, Univ. Bordeaux, INRAE,33883 Villenave d'Ornon, France
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Bres C, Petit J, Reynoud N, Brocard L, Marion D, Lahaye M, Bakan B, Rothan C. The SlSHN2 transcription factor contributes to cuticle formation and epidermal patterning in tomato fruit. MOLECULAR HORTICULTURE 2022; 2:14. [PMID: 37789465 PMCID: PMC10515250 DOI: 10.1186/s43897-022-00035-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Accepted: 05/03/2022] [Indexed: 10/05/2023]
Abstract
Tomato (Solanum lycopersicum) is an established model for studying plant cuticle because of its thick cuticle covering and embedding the epidermal cells of the fruit. In this study, we screened an EMS mutant collection of the miniature tomato cultivar Micro-Tom for fruit cracking mutants and found a mutant displaying a glossy fruit phenotype. By using an established mapping-by-sequencing strategy, we identified the causal mutation in the SlSHN2 transcription factor that is specifically expressed in outer epidermis of growing fruit. The point mutation in the shn2 mutant introduces a K to N amino acid change in the highly conserved 'mm' domain of SHN proteins. The cuticle from shn2 fruit showed a ~ fivefold reduction in cutin while abundance and composition of waxes were barely affected. In addition to alterations in cuticle thickness and properties, epidermal patterning and polysaccharide composition of the cuticle were changed. RNAseq analysis further highlighted the altered expression of hundreds of genes in the fruit exocarp of shn2, including genes associated with cuticle and cell wall formation, hormone signaling and response, and transcriptional regulation. In conclusion, we showed that a point mutation in the transcriptional regulator SlSHN2 causes major changes in fruit cuticle formation and its coordination with epidermal patterning.
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Affiliation(s)
- Cécile Bres
- UMR 1332 BFP, INRAE, Université de Bordeaux, 33140, Villenave d'Ornon, France
| | - Johann Petit
- UMR 1332 BFP, INRAE, Université de Bordeaux, 33140, Villenave d'Ornon, France
| | - Nicolas Reynoud
- Unité Biopolymères, Interactions, Assemblages, INRAE, BP71627, 44316, Nantes Cedex 3, France
| | - Lysiane Brocard
- Univ. Bordeaux, CNRS, INSERM, Bordeaux Imaging Center, BIC, UMS 3420, US 4, 33000, Bordeaux, France
| | - Didier Marion
- Unité Biopolymères, Interactions, Assemblages, INRAE, BP71627, 44316, Nantes Cedex 3, France
| | - Marc Lahaye
- Unité Biopolymères, Interactions, Assemblages, INRAE, BP71627, 44316, Nantes Cedex 3, France
| | - Bénédicte Bakan
- Unité Biopolymères, Interactions, Assemblages, INRAE, BP71627, 44316, Nantes Cedex 3, France
| | - Christophe Rothan
- UMR 1332 BFP, INRAE, Université de Bordeaux, 33140, Villenave d'Ornon, France.
- INRA, UMR 1332 Biologie du Fruit Et Pathologie, 71 Av Edouard Bourlaux, 33140, Villenave d'Ornon, France.
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3
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Lemaire-Chamley M, Koutouan C, Jorly J, Assali J, Yoshida T, Nogueira M, Tohge T, Ferrand C, Peres LEP, Asamizu E, Ezura H, Fraser PD, Hajirezaei MR, Fernie AR, Rothan C. A Chimeric TGA Repressor Slows Down Fruit Maturation and Ripening in Tomato. PLANT & CELL PHYSIOLOGY 2022; 63:120-134. [PMID: 34665867 DOI: 10.1093/pcp/pcab150] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Revised: 09/29/2021] [Accepted: 10/19/2021] [Indexed: 06/13/2023]
Abstract
The bZIP transcription factor (TF) SlTGA2.2 was previously highlighted as a possible hub in a network regulating fruit growth and transition to ripening (maturation phase). It belongs to a clade of TFs well known for their involvement in the regulation of the salicylic acid-dependent systemic acquired resistance. To investigate if this TGA TF plays a role in tomato fruit growth and maturation, we took advantage of the fruit-specific SlPPC2 promoter (PPC2pro) to target the expression of a SlTGA2.2-SRDX chimeric repressor in a developmental window restricted to early fruit growth and maturation. Here, we show that this SlTGA2.2-SRDX repressor alters early fruit development and metabolism, including chloroplast number and structure, considerably extends the time necessary to reach the mature green stage and slows down fruit ripening. RNA sequencing and plant hormone analyses reveal that PPC2pro:SlTGA2.2-SRDX fruits are maintained in an immature stage as long as PPC2pro is active, through early modifications of plant hormonal signaling and down-regulation of MADS-RIN and NAC-NOR ripening regulators. Once PPC2pro becomes inactive and therefore SlTGA2.2-SRDX expression is reduced, ripening can proceed, albeit at a slower pace than normal. Altogether, this work emphasizes the developmental continuum between fruit growth, maturation and ripening and provides a useful tool to alter and study the molecular bases of tomato fruit transition to ripening.
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Affiliation(s)
- Martine Lemaire-Chamley
- INRAE, University of Bordeaux, UMR1332 BFP, 71 Av E Bourlaux, Villenave d'Ornon 33882, France
| | - Claude Koutouan
- INRAE, University of Bordeaux, UMR1332 BFP, 71 Av E Bourlaux, Villenave d'Ornon 33882, France
| | - Joana Jorly
- INRAE, University of Bordeaux, UMR1332 BFP, 71 Av E Bourlaux, Villenave d'Ornon 33882, France
| | - Julien Assali
- INRAE, University of Bordeaux, UMR1332 BFP, 71 Av E Bourlaux, Villenave d'Ornon 33882, France
| | - Takuya Yoshida
- Max-Planck Institute for Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm 14476, Germany
- Laboratory of Plant Molecular Physiology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
| | - Marilise Nogueira
- Department of Biological Sciences, Holloway University of London, Egham Hill, Egham, UK
| | - Takayuki Tohge
- Max-Planck Institute for Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm 14476, Germany
| | - Carine Ferrand
- INRAE, University of Bordeaux, UMR1332 BFP, 71 Av E Bourlaux, Villenave d'Ornon 33882, France
| | - Lázaro E P Peres
- Department of Biological Science, São Paulo University, Avenida Pádua Dias, Piracicaba 13418-900, Brazil
| | - Erika Asamizu
- Tsukuba Plant Innovation Research Center, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8572, Japan
- Department of Plant Life Science, Faculty of Agriculture, Ryukoku University, Shiga 520-2194, Japan
| | - Hiroshi Ezura
- Tsukuba Plant Innovation Research Center, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8572, Japan
| | - Paul D Fraser
- Department of Plant Life Science, Faculty of Agriculture, Ryukoku University, Shiga 520-2194, Japan
| | - Mohammad-Reza Hajirezaei
- Leibniz Institute of Plant Genetics and Crop Plant Research, OT Gatersleben, Corrensstraße 3, Seeland 06466, Germany
| | - Alisdair R Fernie
- Max-Planck Institute for Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm 14476, Germany
| | - Christophe Rothan
- INRAE, University of Bordeaux, UMR1332 BFP, 71 Av E Bourlaux, Villenave d'Ornon 33882, France
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4
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Deslous P, Bournonville C, Decros G, Okabe Y, Mauxion JP, Jorly J, Gadin S, Brès C, Mori K, Ferrand C, Prigent S, Ariizumi T, Ezura H, Hernould M, Rothan C, Pétriacq P, Gibon Y, Baldet P. Overproduction of ascorbic acid impairs pollen fertility in tomato. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:3091-3107. [PMID: 33530105 DOI: 10.1093/jxb/erab040] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Accepted: 01/28/2021] [Indexed: 06/12/2023]
Abstract
Ascorbate is a major antioxidant buffer in plants. Several approaches have been used to increase the ascorbate content of fruits and vegetables. Here, we combined forward genetics with mapping-by-sequencing approaches using an ethyl methanesulfonate (EMS)-mutagenized Micro-Tom population to identify putative regulators underlying a high-ascorbate phenotype in tomato fruits. Among the ascorbate-enriched mutants, the family with the highest fruit ascorbate level (P17C5, up to 5-fold wild-type level) had strongly impaired flower development and produced seedless fruit. Genetic characterization was performed by outcrossing P17C5 with cv. M82. We identified the mutation responsible for the ascorbate-enriched trait in a cis-acting upstream open reading frame (uORF) involved in the downstream regulation of GDP-l-galactose phosphorylase (GGP). Using a specific CRISPR strategy, we generated uORF-GGP1 mutants and confirmed the ascorbate-enriched phenotype. We further investigated the impact of the ascorbate-enriched trait in tomato plants by phenotyping the original P17C5 EMS mutant, the population of outcrossed P17C5 × M82 plants, and the CRISPR-mutated line. These studies revealed that high ascorbate content is linked to impaired floral organ architecture, particularly anther and pollen development, leading to male sterility. RNA-seq analysis suggested that uORF-GGP1 acts as a regulator of ascorbate synthesis that maintains redox homeostasis to allow appropriate plant development.
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Affiliation(s)
- Paul Deslous
- Université de Bordeaux, INRAE, UMR 1332 BFP, 33882 Villenave d'Ornon, France
| | - Céline Bournonville
- Université de Bordeaux, INRAE, UMR 1332 BFP, 33882 Villenave d'Ornon, France
| | - Guillaume Decros
- Université de Bordeaux, INRAE, UMR 1332 BFP, 33882 Villenave d'Ornon, France
| | - Yoshihiro Okabe
- Gene Research Centre, Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai Tsukuba, Ibaraki 205-8572, Japan
| | | | - Joana Jorly
- Université de Bordeaux, INRAE, UMR 1332 BFP, 33882 Villenave d'Ornon, France
| | - Stéphanie Gadin
- Université de Bordeaux, INRAE, UMR 1332 BFP, 33882 Villenave d'Ornon, France
| | - Cécile Brès
- Université de Bordeaux, INRAE, UMR 1332 BFP, 33882 Villenave d'Ornon, France
| | - Kentaro Mori
- Université de Bordeaux, INRAE, UMR 1332 BFP, 33882 Villenave d'Ornon, France
| | - Carine Ferrand
- Université de Bordeaux, INRAE, UMR 1332 BFP, 33882 Villenave d'Ornon, France
| | - Sylvain Prigent
- Université de Bordeaux, INRAE, UMR 1332 BFP, 33882 Villenave d'Ornon, France
| | - Tohru Ariizumi
- Gene Research Centre, Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai Tsukuba, Ibaraki 205-8572, Japan
| | - Hiroshi Ezura
- Gene Research Centre, Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai Tsukuba, Ibaraki 205-8572, Japan
| | - Michel Hernould
- Université de Bordeaux, INRAE, UMR 1332 BFP, 33882 Villenave d'Ornon, France
| | - Christophe Rothan
- Université de Bordeaux, INRAE, UMR 1332 BFP, 33882 Villenave d'Ornon, France
| | - Pierre Pétriacq
- Université de Bordeaux, INRAE, UMR 1332 BFP, 33882 Villenave d'Ornon, France
| | - Yves Gibon
- Université de Bordeaux, INRAE, UMR 1332 BFP, 33882 Villenave d'Ornon, France
| | - Pierre Baldet
- Université de Bordeaux, INRAE, UMR 1332 BFP, 33882 Villenave d'Ornon, France
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5
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Mori K, Lemaire-Chamley M, Jorly J, Carrari F, Conte M, Asamizu E, Mizoguchi T, Ezura H, Rothan C. The conserved brassinosteroid-related transcription factor BIM1a negatively regulates fruit growth in tomato. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:1181-1197. [PMID: 33097930 DOI: 10.1093/jxb/eraa495] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Accepted: 10/20/2020] [Indexed: 06/11/2023]
Abstract
Brassinosteroids (BRs) are steroid hormones that play key roles in plant development and defense. Our goal is to harness the extensive knowledge of the Arabidopsis BR signaling network to improve productivity in crop species. This first requires identifying components of the conserved network and their function in the target species. Here, we investigated the function of SlBIM1a, the closest tomato homolog of AtBIM1, which is highly expressed in fruit. SlBIM1a-overexpressing lines displayed severe plant and fruit dwarfism, and histological characterization of different transgenic lines revealed that SlBIM1a expression negatively correlated with fruit pericarp cell size, resulting in fruit size modifications. These growth phenotypes were in contrast to those found in Arabidopsis, and this was confirmed by the reciprocal ectopic expression of SlBIM1a/b in Arabidopsis and of AtBIM1 in tomato. These results determined that BIM1 function depends more on the recipient species than on its primary sequence. Yeast two-hybrid interaction studies and transcriptomic analyses of SlBIM1a-overexpressing fruit further suggested that SlBIM1a acts through its interaction with SlBZH1 to govern the transcriptional regulation of growth-related BR target genes. Together, these results suggest that SlBIM1a is a negative regulator of pericarp cell expansion, possibly at the crossroads with auxin and light signaling.
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Affiliation(s)
- Kentaro Mori
- INRAE, Univ. Bordeaux, UMR BFP, 33882, Villenave d'Ornon, France
| | | | - Joana Jorly
- INRAE, Univ. Bordeaux, UMR BFP, 33882, Villenave d'Ornon, France
| | - Fernando Carrari
- Instituto de Biotecnología, Instituto Nacional de Tecnología Agropecuaria, Consejo Nacional de Investigaciones Científicas y Técnicas, B1712WAA Castelar, Argentina
| | - Mariana Conte
- Instituto de Biotecnología, Instituto Nacional de Tecnología Agropecuaria, Consejo Nacional de Investigaciones Científicas y Técnicas, B1712WAA Castelar, Argentina
| | - Erika Asamizu
- Department of Plant Life Science, Faculty of Agriculture, Ryukoku University, Otsu, Shiga, Japan
| | - Tsuyoshi Mizoguchi
- Department of Natural Sciences, International Christian University, Mitaka, Tokyo, Japan
| | - Hiroshi Ezura
- Faculty of Life and Environmental Sciences, University of Tsukuba, Tskuba, Ibaraki, Japan
- Tsukuba Plant Innovation Research Center, University of Tsukuba, Tskuba, Ibaraki, Japan
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6
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Mannino G, Campobenedetto C, Vigliante I, Contartese V, Gentile C, Bertea CM. The Application of a Plant Biostimulant Based on Seaweed and Yeast Extract Improved Tomato Fruit Development and Quality. Biomolecules 2020; 10:E1662. [PMID: 33322680 PMCID: PMC7763504 DOI: 10.3390/biom10121662] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Revised: 12/09/2020] [Accepted: 12/10/2020] [Indexed: 12/13/2022] Open
Abstract
Plant biostimulants are under investigation as innovative products to improve plant production and fruit quality, without resulting in environmental and food contaminations. Here, the effects of the application of Expando, a biostimulant based on seaweed and yeast extracts, on plant productivity, fruit ripening times, and fruit quality of Solanum lycopersicum var. Micro-Tom were evaluated. After biostimulant treatment, a two-week reduction of ripening times and a concomitant enhancement of the production percentage during the earliest ripening times, in terms of both fruit yield (+110%) and size (+85%), were observed. Concerning fruit quality, proximate analysis showed that tomatoes treated with the biostimulant had better nutritional composition compared to untreated samples, since both the quality of unsatured fatty acids (C16:3ω3: +328%; C18:2ω6: -23%) and micronutrients essential for human health (Fe: +14%; Cu: +21%; Zn: +24%) were increased. From a nutraceutical point of view, despite strong changes in bioactive compound profile not being observed, an increase of the antioxidant properties was recorded in fruits harvested by plants treated with the biostimulant (2,2'-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid (ABTS): +38%; 2,2-diphenyl-1-picrylhydrazyl (DPPH): +11%). In conclusion, the biostimulant application was able to reduce the ripening times and fruit size, while slightly increasing nutritional and nutraceutical values, leading to more marketable tomato fruits.
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Affiliation(s)
- Giuseppe Mannino
- Department of Life Sciences and Systems Biology, Innovation Centre, Plant Physiology Unit, University of Turin, 10135 Turin, Italy; (G.M.); (C.C.)
| | - Cristina Campobenedetto
- Department of Life Sciences and Systems Biology, Innovation Centre, Plant Physiology Unit, University of Turin, 10135 Turin, Italy; (G.M.); (C.C.)
- Green Has Italia S.p.A, 12043 Canale (CN), Italy (I.V.); (V.C.)
| | - Ivano Vigliante
- Green Has Italia S.p.A, 12043 Canale (CN), Italy (I.V.); (V.C.)
| | | | - Carla Gentile
- Department of Biological, Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, 90128 Palermo, Italy;
| | - Cinzia M. Bertea
- Department of Life Sciences and Systems Biology, Innovation Centre, Plant Physiology Unit, University of Turin, 10135 Turin, Italy; (G.M.); (C.C.)
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7
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Musseau C, Just D, Jorly J, Gévaudant F, Moing A, Chevalier C, Lemaire-Chamley M, Rothan C, Fernandez L. Identification of Two New Mechanisms That Regulate Fruit Growth by Cell Expansion in Tomato. FRONTIERS IN PLANT SCIENCE 2017; 8:988. [PMID: 28659942 PMCID: PMC5467581 DOI: 10.3389/fpls.2017.00988] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2017] [Accepted: 05/24/2017] [Indexed: 05/25/2023]
Abstract
Key mechanisms controlling fruit weight and shape at the levels of meristem, ovary or very young fruit have already been identified using natural tomato diversity. We reasoned that new developmental modules prominent at later stages of fruit growth could be discovered by using new genetic and phenotypic diversity generated by saturated mutagenesis. Twelve fruit weight and tissue morphology mutants likely affected in late fruit growth were selected among thousands of fruit size and shape EMS mutants available in our tomato EMS mutant collection. Their thorough characterization at organ, tissue and cellular levels revealed two major clusters controlling fruit growth and tissue morphogenesis either through (i) the growth of all fruit tissues through isotropic cell expansion or (ii) only the growth of the pericarp through anisotropic cell expansion. These likely correspond to new cell expansion modules controlling fruit growth and tissue morphogenesis in tomato. Our study therefore opens the way for the identification of new gene regulatory networks controlling tomato fruit growth and morphology.
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8
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Garcia V, Bres C, Just D, Fernandez L, Tai FWJ, Mauxion JP, Le Paslier MC, Bérard A, Brunel D, Aoki K, Alseekh S, Fernie AR, Fraser PD, Rothan C. Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing. Nat Protoc 2016; 11:2401-2418. [PMID: 27809315 DOI: 10.1038/nprot.2016.143] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The tomato is the model species of choice for fleshy fruit development and for the Solanaceae family. Ethyl methanesulfonate (EMS) mutants of tomato have already proven their utility for analysis of gene function in plants, leading to improved breeding stocks and superior tomato varieties. However, until recently, the identification of causal mutations that underlie particular phenotypes has been a very lengthy task that many laboratories could not afford because of spatial and technical limitations. Here, we describe a simple protocol for identifying causal mutations in tomato using a mapping-by-sequencing strategy. Plants displaying phenotypes of interest are first isolated by screening an EMS mutant collection generated in the miniature cultivar Micro-Tom. A recombinant F2 population is then produced by crossing the mutant with a wild-type (WT; non-mutagenized) genotype, and F2 segregants displaying the same phenotype are subsequently pooled. Finally, whole-genome sequencing and analysis of allele distributions in the pools allow for the identification of the causal mutation. The whole process, from the isolation of the tomato mutant to the identification of the causal mutation, takes 6-12 months. This strategy overcomes many previous limitations, is simple to use and can be applied in most laboratories with limited facilities for plant culture and genotyping.
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Affiliation(s)
- Virginie Garcia
- Institut National de la Recherche Agronomique and Université de Bordeaux, Unité Mixte de Recherche 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France
| | - Cécile Bres
- Institut National de la Recherche Agronomique and Université de Bordeaux, Unité Mixte de Recherche 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France
| | - Daniel Just
- Institut National de la Recherche Agronomique and Université de Bordeaux, Unité Mixte de Recherche 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France
| | - Lucie Fernandez
- Institut National de la Recherche Agronomique and Université de Bordeaux, Unité Mixte de Recherche 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France
| | - Fabienne Wong Jun Tai
- Institut National de la Recherche Agronomique and Université de Bordeaux, Unité Mixte de Recherche 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France
| | - Jean-Philippe Mauxion
- Institut National de la Recherche Agronomique and Université de Bordeaux, Unité Mixte de Recherche 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France
| | - Marie-Christine Le Paslier
- Institut National de la Recherche Agronomique US1279 Etude du Polymorphisme des Génomes Végétaux, CEA-Institut de Génomique-CNG, Evry, France
| | - Aurélie Bérard
- Institut National de la Recherche Agronomique US1279 Etude du Polymorphisme des Génomes Végétaux, CEA-Institut de Génomique-CNG, Evry, France
| | - Dominique Brunel
- Institut National de la Recherche Agronomique US1279 Etude du Polymorphisme des Génomes Végétaux, CEA-Institut de Génomique-CNG, Evry, France
| | - Koh Aoki
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Osaka, Japan
| | - Saleh Alseekh
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany
| | - Alisdair R Fernie
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany
| | - Paul D Fraser
- School of Biological Sciences, Royal Holloway University of London, Egham, UK
| | - Christophe Rothan
- Institut National de la Recherche Agronomique and Université de Bordeaux, Unité Mixte de Recherche 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France
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