1
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Arai T, Ichinose S, Shibata N, Kakeshita H, Kodama H, Igarashi K, Takimura Y. Inducer-free cellulase production system based on the constitutive expression of mutated XYR1 and ACE3 in the industrial fungus Trichoderma reesei. Sci Rep 2022; 12:19445. [PMID: 36376415 PMCID: PMC9663580 DOI: 10.1038/s41598-022-23815-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2022] [Accepted: 11/07/2022] [Indexed: 11/16/2022] Open
Abstract
Trichoderma reesei is a widely used host for producing cellulase and hemicellulase cocktails for lignocellulosic biomass degradation. Here, we report a genetic modification strategy for industrial T. reesei that enables enzyme production using simple glucose without inducers, such as cellulose, lactose and sophorose. Previously, the mutated XYR1V821F or XYR1A824V was known to induce xylanase and cellulase using only glucose as a carbon source, but its enzyme composition was biased toward xylanases, and its performance was insufficient to degrade lignocellulose efficiently. Therefore, we examined combinations of mutated XYR1V821F and constitutively expressed CRT1, BGLR, VIB1, ACE2, or ACE3, known as cellulase regulators and essential factors for cellulase expression to the T. reesei E1AB1 strain that has been highly mutagenized for improving enzyme productivity and expressing a ß-glucosidase for high enzyme performance. The results showed that expression of ACE3 to the mutated XYR1V821F expressing strain promoted cellulase expression. Furthermore, co-expression of these two transcription factors also resulted in increased productivity, with enzyme productivity 1.5-fold higher than with the conventional single expression of mutated XYR1V821F. Additionally, that productivity was 5.5-fold higher compared to productivity with an enhanced single expression of ACE3. Moreover, although the DNA-binding domain of ACE3 had been considered essential for inducer-free cellulase production, we found that ACE3 with a partially truncated DNA-binding domain was more effective in cellulase production when co-expressed with a mutated XYR1V821F. This study demonstrates that co-expression of the two transcription factors, the mutated XYR1V821F or XYR1A824V and ACE3, resulted in optimized enzyme composition and increased productivity.
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Affiliation(s)
- Toshiharu Arai
- Biological Science Research, Kao Corporation, 1334 Minato, Wakayama, Wakayama, 640‑8580, Japan
| | - Sakurako Ichinose
- Biological Science Research, Kao Corporation, 1334 Minato, Wakayama, Wakayama, 640‑8580, Japan
| | - Nozomu Shibata
- Biological Science Research, Kao Corporation, 1334 Minato, Wakayama, Wakayama, 640‑8580, Japan
| | - Hiroshi Kakeshita
- Biological Science Research, Kao Corporation, 1334 Minato, Wakayama, Wakayama, 640‑8580, Japan.
| | - Hiroshi Kodama
- Biological Science Research, Kao Corporation, 1334 Minato, Wakayama, Wakayama, 640‑8580, Japan
| | - Kazuaki Igarashi
- Biological Science Research, Kao Corporation, 1334 Minato, Wakayama, Wakayama, 640‑8580, Japan
| | - Yasushi Takimura
- Biological Science Research, Kao Corporation, 1334 Minato, Wakayama, Wakayama, 640‑8580, Japan
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2
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Abo-Kadoum MA, Abouelela ME, Al Mousa AA, Abo-Dahab NF, Mosa MA, Helmy YA, Hassane AMA. Resveratrol biosynthesis, optimization, induction, bio-transformation and bio-degradation in mycoendophytes. Front Microbiol 2022; 13:1010332. [PMID: 36304949 PMCID: PMC9593044 DOI: 10.3389/fmicb.2022.1010332] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Accepted: 08/23/2022] [Indexed: 11/13/2022] Open
Abstract
Resveratrol (3,4,5-trihydroxystilbene) is a naturally occurring polyphenolic stilbene compound produced by certain plant species in response to biotic and abiotic factors. Resveratrol has sparked a lot of interest due to its unique structure and approved therapeutic properties for the prevention and treatment of many diseases such as neurological disease, cardiovascular disease, diabetes, inflammation, cancer, and Alzheimer's disease. Over the last few decades, many studies have focused on the production of resveratrol from various natural sources and the optimization of large-scale production. Endophytic fungi isolated from various types of grapevines and Polygonum cuspidatum, the primary plant sources of resveratrol, demonstrated intriguing resveratrol-producing ability. Due to the increasing demand for resveratrol, one active area of research is the use of endophytic fungi and metabolic engineering techniques for resveratrol's large-scale production. The current review addresses an overview of endophytic fungi as a source for production, as well as biosynthesis pathways and relevant genes incorporated in resveratrol biosynthesis. Various approaches for optimizing resveratrol production from endophytic fungi, as well as their bio-transformation and bio-degradation, are explained in detail.
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Affiliation(s)
- M. A. Abo-Kadoum
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Assiut, Egypt
| | - Mohamed E. Abouelela
- Department of Pharmacognosy, Faculty of Pharmacy, Al-Azhar University, Assiut, Egypt
- Department of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, Lexington, KY, United States
| | - Amal A. Al Mousa
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Nageh F. Abo-Dahab
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Assiut, Egypt
| | - Mohamed A. Mosa
- Nanotechnology and Advanced Nano-Materials Laboratory (NANML), Plant Pathology Research Institute, Agricultural Research Center, Giza, Egypt
| | - Yosra A. Helmy
- Department of Veterinary Science, College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY, United States
- Department of Animal Hygiene, Zoonoses and Animal Ethology, Faculty of Veterinary Medicine, Suez Canal University, Ismailia, Egypt
| | - Abdallah M. A. Hassane
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Assiut, Egypt
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3
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Xia DD, Duan HJ, Xie F, Xie TP, Zhang Y, Sun Y, Lu JM, Gao YH, Zhou H, Ding ZT. Altereporenes A-E, five epoxy octa-hydronaphthalene polyketides produced by an endophytic fungus Alternaria sp. YUD20002. RSC Adv 2022; 12:22295-22301. [PMID: 36043060 PMCID: PMC9364171 DOI: 10.1039/d2ra03917f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2022] [Accepted: 07/22/2022] [Indexed: 11/21/2022] Open
Abstract
Five previously undescribed epoxy octa-hydronaphthalene polyketides, altereporenes A-E (1-5) were isolated from rice culture of the endophytic fungus Alternaria sp. YUD20002 derived from the tubers of Solanum tuberosum. Their structures were determined on the basis of comprehensive spectroscopic analyses, while the absolute configurations were elucidated by the comparison of experimental and calculated specific rotations. Meanwhile, the antimicrobial, cytotoxic, anti-inflammatory and acetylcholinesterase inhibitory activities of compounds 1-5 were also investigated.
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Affiliation(s)
- Dan-Dan Xia
- Key Laboratory of Functional Molecules Analysis and Biotransformation of Universities in Yunnan Province, School of Chemical Science and Technology, Yunnan University Kunming 650091 China
| | - Hao-Jie Duan
- Key Laboratory of Functional Molecules Analysis and Biotransformation of Universities in Yunnan Province, School of Chemical Science and Technology, Yunnan University Kunming 650091 China
| | - Fei Xie
- Key Laboratory of Functional Molecules Analysis and Biotransformation of Universities in Yunnan Province, School of Chemical Science and Technology, Yunnan University Kunming 650091 China
| | - Tian-Peng Xie
- Key Laboratory of Functional Molecules Analysis and Biotransformation of Universities in Yunnan Province, School of Chemical Science and Technology, Yunnan University Kunming 650091 China
| | - Yan Zhang
- Key Laboratory of Functional Molecules Analysis and Biotransformation of Universities in Yunnan Province, School of Chemical Science and Technology, Yunnan University Kunming 650091 China
| | - Yue Sun
- Key Laboratory of Functional Molecules Analysis and Biotransformation of Universities in Yunnan Province, School of Chemical Science and Technology, Yunnan University Kunming 650091 China
| | - Jian-Mei Lu
- Key Laboratory of Functional Molecules Analysis and Biotransformation of Universities in Yunnan Province, School of Chemical Science and Technology, Yunnan University Kunming 650091 China
| | - Yu-Hong Gao
- The First People's Hospital of Yunnan Province Kunming 650034 China
| | - Hao Zhou
- Key Laboratory of Functional Molecules Analysis and Biotransformation of Universities in Yunnan Province, School of Chemical Science and Technology, Yunnan University Kunming 650091 China
| | - Zhong-Tao Ding
- Key Laboratory of Functional Molecules Analysis and Biotransformation of Universities in Yunnan Province, School of Chemical Science and Technology, Yunnan University Kunming 650091 China .,College of Pharmacy, Dali University Dali 671000 China
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4
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Ramesha KP, Chandra Mohana N, Chandra Nayaka S, Satish S. Epigenetic Modifiers Revamp Secondary Metabolite Production in Endophytic Nigrospora sphaerica. Front Microbiol 2021; 12:730355. [PMID: 34925254 PMCID: PMC8678036 DOI: 10.3389/fmicb.2021.730355] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Accepted: 10/22/2021] [Indexed: 11/13/2022] Open
Abstract
During plant interaction, endophytes provide benefits to the host plant. Endophytes also contribute a variety of structural attributes with biological potential. Nigrospora sphaerica, which produces phomalactone from Adiantum philippense L., was subjected to epigenetic modification. High-performance liquid chromatography (HPLC) and Gas chromatography-mass spectrometry (GCMS) analysis were used to determine secondary metabolite profiling. Epigenetic modifiers like DNA Methyltransferase (DNMT) and Histone deacetylase (HDAC) inhibitors increased the expression of biosynthetic pathways. The activation of new metabolites was observed as a result of the activation of cryptic biosynthetic gene clusters, as well as the silencing of phomalactone in some treatments. When compared to DNMT treatments, HDAC treatments showed a significant increase in cryptic metabolite induction. The induction of cryptic metabolites with biological significance by HDAC treatment is supported by our findings.
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Affiliation(s)
- Kolathuru Puttamadaiah Ramesha
- Microbial Drug Technological Laboratory, Department of Studies in Microbiology, University of Mysore, Manasagangotri, Mysore, India
| | - Nagabhushana Chandra Mohana
- Microbial Drug Technological Laboratory, Department of Studies in Microbiology, University of Mysore, Manasagangotri, Mysore, India
| | | | - Sreedharamurthy Satish
- Microbial Drug Technological Laboratory, Department of Studies in Microbiology, University of Mysore, Manasagangotri, Mysore, India
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5
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Valente S, Piombo E, Schroeckh V, Meloni GR, Heinekamp T, Brakhage AA, Spadaro D. CRISPR-Cas9-Based Discovery of the Verrucosidin Biosynthesis Gene Cluster in Penicillium polonicum. Front Microbiol 2021; 12:660871. [PMID: 34093475 PMCID: PMC8176439 DOI: 10.3389/fmicb.2021.660871] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 04/15/2021] [Indexed: 12/03/2022] Open
Abstract
Penicillium polonicum, commonly found on food matrices, is a mycotoxigenic species able to produce a neurotoxin called verrucosidin. This methylated α-pyrone polyketide inhibits oxidative phosphorylation in mitochondria and thereby causes neurological diseases. Despite the importance of verrucosidin as a toxin, its biosynthetic genes have not been characterized yet. By similarity analysis with the polyketide synthase (PKS) genes for the α-pyrones aurovertin (AurA) and citreoviridin (CtvA), 16 PKS genes for putative α-pyrones were identified in the P. polonicum genome. A single PKS gene, verA, was found to be transcribed under verrucosidin-producing growth conditions. The annotated functions of the genes neighboring verA correspond to those required for verrucosidin biosynthesis. To prove the involvement of verA in verrucosidin biosynthesis, the clustered regularly interspaced short palindrome repeats (CRISPR) technology was applied to P. polonicum. In vitro reconstituted CRISPR-Cas9 was used to induce targeted gene deletions in P. polonicum. This approach allowed identifying and characterizing the verrucosidin biosynthetic gene cluster. VerA deletion mutants were no longer able to produce verrucosidin, whereas they were displaying morphological characteristics comparable with the wild-type strain. The available CRISPR-Cas9 technology allows characterizing the biosynthetic potential of P. polonicum as a valuable source of novel compounds.
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Affiliation(s)
- Silvia Valente
- AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, Grugliasco, Italy.,Department of Agricultural, Forest and Food Sciences, Università degli Studi di Torino, Grugliasco, Italy
| | - Edoardo Piombo
- AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, Grugliasco, Italy.,Department of Agricultural, Forest and Food Sciences, Università degli Studi di Torino, Grugliasco, Italy
| | - Volker Schroeckh
- Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute, Jena, Germany
| | - Giovanna Roberta Meloni
- AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, Grugliasco, Italy.,Department of Agricultural, Forest and Food Sciences, Università degli Studi di Torino, Grugliasco, Italy
| | - Thorsten Heinekamp
- Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute, Jena, Germany
| | - Axel A Brakhage
- Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute, Jena, Germany.,Department of Microbiology and Molecular Biology, Institute for Microbiology, Friedrich Schiller University, Jena, Germany
| | - Davide Spadaro
- AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, Grugliasco, Italy.,Department of Agricultural, Forest and Food Sciences, Università degli Studi di Torino, Grugliasco, Italy
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6
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Yang HX, Wu X, Chi MJ, Li ZH, Feng T, Ai HL, Liu JK. Structure and cytotoxicity of trichothecenes produced by the potato-associated fungus Trichothecium crotocinigenum. Bioorg Chem 2021; 111:104874. [PMID: 33887585 DOI: 10.1016/j.bioorg.2021.104874] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Revised: 03/23/2021] [Accepted: 03/24/2021] [Indexed: 10/21/2022]
Abstract
Seven previously undescribed trichothecenes, named trichothecrotocins M-S (1-7), along with five known compounds, were isolated from rice cultures of the potato-associated fungus Trichothecium crotocinigenum. Their structures and absolute configurations were determined through spectroscopic methods, single-crystal X-ray diffraction, and quantum chemistry calculations on ECD. Compound 1 possesses a rare 6,11-epoxy moiety in the trichothecene family. Compound 6 exhibited strong cytotoxic activity against MCF-7 cancer cell lines with an IC50 value of 2.34 ± 0.45 μM. It promoted apoptosis induction in MCF-7 cells. Moreover, cell cycle analysis showed cell cycle arrest caused by compound 6 at the G2/M phase which resulted to cell proliferation inhibition and pro-apoptotic activity. Further quantitative real-time PCR (qRT-PCR) analysis confirmed that the G2/M arrest was accompanied by upregulation of p21 and down regulation of cyclins B1 in 6-treated MCF-7 cells.
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Affiliation(s)
- Hui-Xiang Yang
- School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan 430074, People's Republic of China
| | - Xing Wu
- School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan 430074, People's Republic of China
| | - Mei-Jing Chi
- School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan 430074, People's Republic of China
| | - Zheng-Hui Li
- School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan 430074, People's Republic of China; The Modernization Engineering Technology Research Center of Ethnic Minority Medicine of Hubei Province, School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan 430074, People's Republic of China
| | - Tao Feng
- School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan 430074, People's Republic of China; The Modernization Engineering Technology Research Center of Ethnic Minority Medicine of Hubei Province, School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan 430074, People's Republic of China
| | - Hong-Lian Ai
- School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan 430074, People's Republic of China; The Modernization Engineering Technology Research Center of Ethnic Minority Medicine of Hubei Province, School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan 430074, People's Republic of China.
| | - Ji-Kai Liu
- School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan 430074, People's Republic of China; The Modernization Engineering Technology Research Center of Ethnic Minority Medicine of Hubei Province, School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan 430074, People's Republic of China.
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7
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Norvienyeku J, Lin L, Waheed A, Chen X, Bao J, Aliyu SR, Lin L, Shabbir A, Batool W, Zhong Z, Zhou J, Lu G, Wang Z. Bayogenin 3-O-cellobioside confers non-cultivar-specific defence against the rice blast fungus Pyricularia oryzae. PLANT BIOTECHNOLOGY JOURNAL 2021; 19:589-601. [PMID: 33043566 PMCID: PMC7955875 DOI: 10.1111/pbi.13488] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Accepted: 09/27/2020] [Indexed: 05/06/2023]
Abstract
Rice cultivars from japonica and indica lineage possess differential resistance against blast fungus as a result of genetic divergence. Whether different rice cultivars also show distinct metabolomic changes in response to P. oryzae, and their role in host resistance, are poorly understood. Here, we examine the responses of six different rice cultivars from japonica and indica lineage challenged with P. oryzae. Both susceptible and resistant rice cultivars expressed several metabolites exclusively during P. oryzae infection, including the saponin Bayogenin 3-O-cellobioside. Bayogenin 3-O-cellobioside level in infected rice directly correlated with their resistant attributes. These findings reveal, for the first time to our knowledge that besides oat, other grass plants including rice produces protective saponins. Our study provides insight into the role of pathogen-mediated metabolomics reprogramming in host immunity. The correlation between Bayogenin 3-O-Cellobioside levels and blast resistance suggests that engineering saponin expression in cereal crops represents attractive and sustainable disease management.
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Affiliation(s)
- Justice Norvienyeku
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Ministry of Education Key Laboratory of Biopesticides and Chemical BiologyCollege of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
| | - Lili Lin
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Ministry of Education Key Laboratory of Biopesticides and Chemical BiologyCollege of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
| | - Abdul Waheed
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Ministry of Education Key Laboratory of Biopesticides and Chemical BiologyCollege of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
| | - Xiaomin Chen
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Ministry of Education Key Laboratory of Biopesticides and Chemical BiologyCollege of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
| | - Jiandong Bao
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Ministry of Education Key Laboratory of Biopesticides and Chemical BiologyCollege of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
| | - Sami Rukaiya Aliyu
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Ministry of Education Key Laboratory of Biopesticides and Chemical BiologyCollege of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
| | - Lianyu Lin
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Ministry of Education Key Laboratory of Biopesticides and Chemical BiologyCollege of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
| | - Ammarah Shabbir
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Ministry of Education Key Laboratory of Biopesticides and Chemical BiologyCollege of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
| | - Wajjiha Batool
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Ministry of Education Key Laboratory of Biopesticides and Chemical BiologyCollege of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
| | - Zhenhui Zhong
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Ministry of Education Key Laboratory of Biopesticides and Chemical BiologyCollege of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
| | - Jie Zhou
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Ministry of Education Key Laboratory of Biopesticides and Chemical BiologyCollege of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
| | - Guodong Lu
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Ministry of Education Key Laboratory of Biopesticides and Chemical BiologyCollege of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
| | - Zonghua Wang
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Ministry of Education Key Laboratory of Biopesticides and Chemical BiologyCollege of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
- Institute of OceanographyMinjiang UniversityFuzhouChina
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8
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Hoff B, Plassmeier J, Blankschien M, Letzel AC, Kourtz L, Schröder H, Koch W, Zelder O. Unlocking Nature's Biosynthetic Power-Metabolic Engineering for the Fermentative Production of Chemicals. Angew Chem Int Ed Engl 2021; 60:2258-2278. [PMID: 33026132 DOI: 10.1002/anie.202004248] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 07/08/2020] [Indexed: 01/03/2023]
Abstract
Fermentation as a production method for chemicals is especially attractive, as it is based on cheap renewable raw materials and often exhibits advantages in terms of costs and sustainability. The tremendous development of technology in bioscience has resulted in an exponentially increasing knowledge about biological systems and has become the main driver for innovations in the field of metabolic engineering. Progress in recombinant DNA technology, genomics, and computational methods open new, cheaper, and faster ways to metabolically engineer microorganisms. Existing biosynthetic pathways for natural products, such as vitamins, organic acids, amino acids, or secondary metabolites, can be discovered and optimized efficiently, thereby enabling competitive commercial production processes. Novel biosynthetic routes can now be designed by the rearrangement of nature's unlimited number of enzymes and metabolic pathways in microbial strains. This expands the range of chemicals accessible by biotechnology and has yielded the first commercial products, while new fermentation technologies targeting novel active ingredients, commodity chemicals, and CO2 -fixation methods are on the horizon.
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Affiliation(s)
- Birgit Hoff
- RBW, White Biotechnology Research, BASF SE, building: A30, Carl-Bosch-Strasse 38, 67056, Ludwigshafen am Rhein, Germany
| | - Jens Plassmeier
- Biomaterials, Conagen, Inc., 15 DeAngelo Drive, 01730, Bedford, MA, USA
| | - Matthew Blankschien
- James R. Randall Research Center, ADM, 1001 North Brush College Road, 62521, Decatur, Il, USA
| | - Anne-Catrin Letzel
- RBW, White Biotechnology Research, BASF SE, building: A30, Carl-Bosch-Strasse 38, 67056, Ludwigshafen am Rhein, Germany
| | - Lauralynn Kourtz
- R&D, Allied Microbiota, 1345 Ave of Americas, 10105, New York, NY, USA
| | - Hartwig Schröder
- RBW, White Biotechnology Research, BASF SE, building: A30, Carl-Bosch-Strasse 38, 67056, Ludwigshafen am Rhein, Germany
| | - Walter Koch
- RBW, White Biotechnology Research, BASF SE, building: A30, Carl-Bosch-Strasse 38, 67056, Ludwigshafen am Rhein, Germany
| | - Oskar Zelder
- RBW, White Biotechnology Research, BASF SE, building: A30, Carl-Bosch-Strasse 38, 67056, Ludwigshafen am Rhein, Germany
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9
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Uka V, Cary JW, Lebar MD, Puel O, De Saeger S, Diana Di Mavungu J. Chemical repertoire and biosynthetic machinery of the Aspergillus flavus secondary metabolome: A review. Compr Rev Food Sci Food Saf 2020; 19:2797-2842. [PMID: 33337039 DOI: 10.1111/1541-4337.12638] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Revised: 08/23/2020] [Accepted: 08/24/2020] [Indexed: 12/18/2022]
Abstract
Filamentous fungi represent a rich source of extrolites, including secondary metabolites (SMs) comprising a great variety of astonishing structures and interesting bioactivities. State-of-the-art techniques in genome mining, genetic manipulation, and secondary metabolomics have enabled the scientific community to better elucidate and more deeply appreciate the genetic and biosynthetic chemical arsenal of these microorganisms. Aspergillus flavus is best known as a contaminant of food and feed commodities and a producer of the carcinogenic family of SMs, aflatoxins. This fungus produces many SMs including polyketides, ribosomal and nonribosomal peptides, terpenoids, and other hybrid molecules. This review will discuss the chemical diversity, biosynthetic pathways, and biological/ecological role of A. flavus SMs, as well as their significance concerning food safety and security.
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Affiliation(s)
- Valdet Uka
- Center of Excellence in Mycotoxicology and Public Health, Faculty of Pharmaceutical Sciences, Ghent University, Ghent, Belgium.,Division of Pharmacy, Faculty of Medicine, University of Pristina, Pristina, Kosovo
| | - Jeffrey W Cary
- Southern Regional Research Center, USDA-ARS, New Orleans, Louisiana
| | - Matthew D Lebar
- Southern Regional Research Center, USDA-ARS, New Orleans, Louisiana
| | - Olivier Puel
- Toxalim (Research Centre in Food Toxicology), INRAE, ENVT, INP-Purpan, UPS, Université de Toulouse, Toulouse, France
| | - Sarah De Saeger
- Center of Excellence in Mycotoxicology and Public Health, Faculty of Pharmaceutical Sciences, Ghent University, Ghent, Belgium
| | - José Diana Di Mavungu
- Center of Excellence in Mycotoxicology and Public Health, Faculty of Pharmaceutical Sciences, Ghent University, Ghent, Belgium
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10
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Hoff B, Plassmeier J, Blankschien M, Letzel A, Kourtz L, Schröder H, Koch W, Zelder O. Unlocking Nature's Biosynthetic Power—Metabolic Engineering for the Fermentative Production of Chemicals. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202004248] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Birgit Hoff
- RBW, White Biotechnology Research BASF SE building: A30, Carl-Bosch-Strasse 38 67056 Ludwigshafen am Rhein Germany
| | - Jens Plassmeier
- Biomaterials Conagen, Inc. 15 DeAngelo Drive 01730 Bedford, MA USA
| | - Matthew Blankschien
- James R. Randall Research Center ADM 1001 North Brush College Road 62521 Decatur, Il USA
| | - Anne‐Catrin Letzel
- RBW, White Biotechnology Research BASF SE building: A30, Carl-Bosch-Strasse 38 67056 Ludwigshafen am Rhein Germany
| | - Lauralynn Kourtz
- R&D Allied Microbiota 1345 Ave of Americas 10105 New York, NY USA
| | - Hartwig Schröder
- RBW, White Biotechnology Research BASF SE building: A30, Carl-Bosch-Strasse 38 67056 Ludwigshafen am Rhein Germany
| | - Walter Koch
- RBW, White Biotechnology Research BASF SE building: A30, Carl-Bosch-Strasse 38 67056 Ludwigshafen am Rhein Germany
| | - Oskar Zelder
- RBW, White Biotechnology Research BASF SE building: A30, Carl-Bosch-Strasse 38 67056 Ludwigshafen am Rhein Germany
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11
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McCluskey K, Barker KB, Barton HA, Boundy-Mills K, Brown DR, Coddington JA, Cook K, Desmeth P, Geiser D, Glaeser JA, Greene S, Kang S, Lomas MW, Melcher U, Miller SE, Nobles DR, Owens KJ, Reichman JH, da Silva M, Wertz J, Whitworth C, Smith D. The U.S. Culture Collection Network Responding to the Requirements of the Nagoya Protocol on Access and Benefit Sharing. mBio 2017; 8:e00982-17. [PMID: 28811341 PMCID: PMC5559631 DOI: 10.1128/mbio.00982-17] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
The U.S. Culture Collection Network held a meeting to share information about how culture collections are responding to the requirements of the recently enacted Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable Sharing of Benefits Arising from their Utilization to the Convention on Biological Diversity (CBD). The meeting included representatives of many culture collections and other biological collections, the U.S. Department of State, U.S. Department of Agriculture, Secretariat of the CBD, interested scientific societies, and collection groups, including Scientific Collections International and the Global Genome Biodiversity Network. The participants learned about the policies of the United States and other countries regarding access to genetic resources, the definition of genetic resources, and the status of historical materials and genetic sequence information. Key topics included what constitutes access and how the CBD Access and Benefit-Sharing Clearing-House can help guide researchers through the process of obtaining Prior Informed Consent on Mutually Agreed Terms. U.S. scientists and their international collaborators are required to follow the regulations of other countries when working with microbes originally isolated outside the United States, and the local regulations required by the Nagoya Protocol vary by the country of origin of the genetic resource. Managers of diverse living collections in the United States described their holdings and their efforts to provide access to genetic resources. This meeting laid the foundation for cooperation in establishing a set of standard operating procedures for U.S. and international culture collections in response to the Nagoya Protocol.
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Affiliation(s)
- Kevin McCluskey
- Fungal Genetic Stock Center, Department of Plant Pathology, Kansas State University, Manhattan, Kansas, USA
| | - Katharine B Barker
- National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
| | - Hazel A Barton
- Department of Biology, University of Akron, Akron, Ohio, USA
| | - Kyria Boundy-Mills
- Phaff Yeast Culture Collection, Food Science, University of California, Davis, Davis, California, USA
| | - Daniel R Brown
- Infectious Diseases and Pathology, College of Veterinary Medicine, University of Florida, Gainesville, Florida, USA
| | - Jonathan A Coddington
- Global Genome Initiative, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
| | - Kevin Cook
- Bloomington Drosophila Stock Center, Department of Biology, Indiana University, Bloomington, Indiana, USA
| | | | - David Geiser
- The Fusarium Research Center, Penn State University, State College, Pennsylvania, USA
| | - Jessie A Glaeser
- U.S. Forest Service, Northern Research Station, Center for Forest Mycology Research, Madison, Wisconsin, USA
| | - Stephanie Greene
- USDA National Laboratory for Genetic Resources Preservation, Fort Collins, Colorado, USA
| | - Seogchan Kang
- Penn State University, State College, Pennsylvania, USA
| | - Michael W Lomas
- National Center for Marine Algae and Microbiota, East Boothbay Harbor, Maine, USA
| | | | | | | | | | | | | | - John Wertz
- E. coli Stock Center, Yale University, New Haven, Connecticut, USA
| | - Cale Whitworth
- Bloomington Drosophila Stock Center, Department of Biology, Indiana University Bloomington, Indiana, USA
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12
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Guzmán-Chávez F, Salo O, Nygård Y, Lankhorst PP, Bovenberg RAL, Driessen AJM. Mechanism and regulation of sorbicillin biosynthesis by Penicillium chrysogenum. Microb Biotechnol 2017; 10:958-968. [PMID: 28618182 PMCID: PMC5481523 DOI: 10.1111/1751-7915.12736] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2017] [Revised: 04/25/2017] [Accepted: 04/28/2017] [Indexed: 11/29/2022] Open
Abstract
Penicillium chrysogenum is a filamentous fungus that is used to produce β-lactams at an industrial scale. At an early stage of classical strain improvement, the ability to produce the yellow-coloured sorbicillinoids was lost through mutation. Sorbicillinoids are highly bioactive of great pharmaceutical interest. By repair of a critical mutation in one of the two polyketide synthases in an industrial P. chrysogenum strain, sorbicillinoid production was restored at high levels. Using this strain, the sorbicillin biosynthesis pathway was elucidated through gene deletion, overexpression and metabolite profiling. The polyketide synthase enzymes SorA and SorB are required to generate the key intermediates sorbicillin and dihydrosorbicillin, which are subsequently converted to (dihydro)sorbillinol by the FAD-dependent monooxygenase SorC and into the final product oxosorbicillinol by the oxidoreductase SorD. Deletion of either of the two pks genes not only impacted the overall production but also strongly reduce the expression of the pathway genes. Expression is regulated through the interplay of two transcriptional regulators: SorR1 and SorR2. SorR1 acts as a transcriptional activator, while SorR2 controls the expression of sorR1. Furthermore, the sorbicillinoid pathway is regulated through a novel autoinduction mechanism where sorbicillinoids activate transcription.
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Affiliation(s)
- Fernando Guzmán-Chávez
- Molecular Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Oleksandr Salo
- Molecular Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Yvonne Nygård
- Molecular Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Peter P Lankhorst
- Synthetic Biology and Cell Engineering, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Roel A L Bovenberg
- Synthetic Biology and Cell Engineering, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
- DSM Biotechnology Center, Alexander Fleminglaan 1, 2613 AX Delft, The Netherlands
| | - Arnold J M Driessen
- Molecular Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
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13
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Sharma VK, Kumar J, Singh DK, Mishra A, Verma SK, Gond SK, Kumar A, Singh N, Kharwar RN. Induction of Cryptic and Bioactive Metabolites through Natural Dietary Components in an Endophytic Fungus Colletotrichum gloeosporioides (Penz.) Sacc. Front Microbiol 2017; 8:1126. [PMID: 28674526 PMCID: PMC5474492 DOI: 10.3389/fmicb.2017.01126] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2017] [Accepted: 06/01/2017] [Indexed: 02/06/2023] Open
Abstract
Grape skin and turmeric extracts having the major components resveratrol and curcumin, respectively, were used for the induction of cryptic and bioactive metabolites in an endophytic fungus Colletotrichum gloeosporioides isolated from Syzygium cumini. The increase in total amount of crude compounds in grape skin and turmeric extract treated cultures was 272.48 and 174.32%, respectively, compared to the untreated control. Among six human pathogenic bacteria tested, the maximum inhibitory activity was found against Aeromonas hydrophila IMS/GN11 while no inhibitory activity was observed against Enterococcus faecalis IMS/GN7. The crude compounds derived from turmeric extract treated cultures showed the highest DPPH free radicals scavenging activity (86.46% inhibition) followed by compounds from grape skin treated cultures (11.80% inhibition) and the control cultures (1.92% inhibition). Both the treatments significantly (p ≤ 0.05) increased the antibacterial and antioxidant activities of crude metabolites compared to the control. HPLC profiling of crude compounds derived from grape skin and turmeric extract treated cultures revealed the presence of additional 20 and 14 cryptic compounds, respectively, compared to the control. These findings advocate the future use of such dietary components in induced production of cryptic and bioactive metabolites.
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Affiliation(s)
- Vijay K. Sharma
- Mycopathology and Microbial Technology Laboratory, Centre of Advanced Study in Botany, Department of Botany, Institute of Science, Banaras Hindu UniversityVaranasi, India
| | - Jitendra Kumar
- Mycopathology and Microbial Technology Laboratory, Centre of Advanced Study in Botany, Department of Botany, Institute of Science, Banaras Hindu UniversityVaranasi, India
| | - Dheeraj K. Singh
- Mycopathology and Microbial Technology Laboratory, Centre of Advanced Study in Botany, Department of Botany, Institute of Science, Banaras Hindu UniversityVaranasi, India
| | - Ashish Mishra
- Mycopathology and Microbial Technology Laboratory, Centre of Advanced Study in Botany, Department of Botany, Institute of Science, Banaras Hindu UniversityVaranasi, India
| | - Satish K. Verma
- Mycopathology and Microbial Technology Laboratory, Centre of Advanced Study in Botany, Department of Botany, Institute of Science, Banaras Hindu UniversityVaranasi, India
| | - Surendra K. Gond
- Botany Section, Mahila Maha Vidyalaya, Banaras Hindu UniversityVaranasi, India
| | - Anuj Kumar
- Department of Botany, Buddha PG CollegeKushinagar, India
| | - Namrata Singh
- Mycopathology and Microbial Technology Laboratory, Centre of Advanced Study in Botany, Department of Botany, Institute of Science, Banaras Hindu UniversityVaranasi, India
| | - Ravindra N. Kharwar
- Mycopathology and Microbial Technology Laboratory, Centre of Advanced Study in Botany, Department of Botany, Institute of Science, Banaras Hindu UniversityVaranasi, India,*Correspondence: Ravindra N. Kharwar,
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