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Light-driven CO2 assimilation by photosystem II and its relation to photosynthesis. CHINESE JOURNAL OF CATALYSIS 2023. [DOI: 10.1016/s1872-2067(22)64170-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
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Shitov AV, Terentyev VV, Zharmukhamedov SK, Rodionova MV, Karacan M, Karacan N, Klimov VV, Allakhverdiev SI. Is carbonic anhydrase activity of photosystem II required for its maximum electron transport rate? BIOCHIMICA ET BIOPHYSICA ACTA. BIOENERGETICS 2018; 1859:292-299. [PMID: 29410217 DOI: 10.1016/j.bbabio.2018.01.009] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2018] [Accepted: 01/26/2018] [Indexed: 01/05/2023]
Abstract
It is known, that the multi-subunit complex of photosystem II (PSII) and some of its single proteins exhibit carbonic anhydrase activity. Previously, we have shown that PSII depletion of HCO3-/CO2 as well as the suppression of carbonic anhydrase activity of PSII by a known inhibitor of α‑carbonic anhydrases, acetazolamide (AZM), was accompanied by a decrease of electron transport rate on the PSII donor side. It was concluded that carbonic anhydrase activity was required for maximum photosynthetic activity of PSII but it was not excluded that AZM may have two independent mechanisms of action on PSII: specific and nonspecific. To investigate directly the specific influence of carbonic anhydrase inhibition on the photosynthetic activity in PSII we used another known inhibitor of α‑carbonic anhydrase, trifluoromethanesulfonamide (TFMSA), which molecular structure and physicochemical properties are quite different from those of AZM. In this work, we show for the first time that TFMSA inhibits PSII carbonic anhydrase activity and decreases rates of both the photo-induced changes of chlorophyll fluorescence yield and the photosynthetic oxygen evolution. The inhibitory effect of TFMSA on PSII photosynthetic activity was revealed only in the medium depleted of HCO3-/CO2. Addition of exogenous HCO3- or PSII electron donors led to disappearance of the TFMSA inhibitory effect on the electron transport in PSII, indicating that TFMSA inhibition site was located on the PSII donor side. These results show the specificity of TFMSA action on carbonic anhydrase and photosynthetic activities of PSII. In this work, we discuss the necessity of carbonic anhydrase activity for the maximum effectiveness of electron transport on the donor side of PSII.
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Affiliation(s)
- Alexandr V Shitov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya Street 2, Pushchino, Moscow Region 142290, Russia.
| | - Vasily V Terentyev
- Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya Street 2, Pushchino, Moscow Region 142290, Russia
| | - Sergey K Zharmukhamedov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya Street 2, Pushchino, Moscow Region 142290, Russia; Controlled Photobiosynthesis Laboratory, Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow 127276, Russia
| | - Margarita V Rodionova
- Controlled Photobiosynthesis Laboratory, Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow 127276, Russia
| | - Mehmet Karacan
- Gazi University, Science Faculty, Department of Chemistry, 06500 Ankara, Turkey
| | - Nurcan Karacan
- Gazi University, Science Faculty, Department of Chemistry, 06500 Ankara, Turkey
| | - Vyacheslav V Klimov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya Street 2, Pushchino, Moscow Region 142290, Russia
| | - Suleyman I Allakhverdiev
- Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya Street 2, Pushchino, Moscow Region 142290, Russia; Controlled Photobiosynthesis Laboratory, Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow 127276, Russia; Department of Plant Physiology, Faculty of Biology, M.V. Lomonosov Moscow State University, Leninskie Gory 1-12, Moscow 119991, Russia; Moscow Institute of Physics and Technology, Institutsky lane 9, Dolgoprudny, Moscow Region 141700, Russia; Institute of Molecular Biology and Biotechnology, Azerbaijan National Academy of Sciences, Matbuat Avenue 2a, Baku 1073, Azerbaijan.
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Allakhverdiev SI, Zharmukhamedov SK, Rodionova MV, Shuvalov VA, Dismukes C, Shen JR, Barber J, Samuelsson G. Vyacheslav (Slava) Klimov (1945-2017): A scientist par excellence, a great human being, a friend, and a Renaissance man. PHOTOSYNTHESIS RESEARCH 2018; 136:1-16. [PMID: 28921410 DOI: 10.1007/s11120-017-0440-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2017] [Accepted: 08/15/2017] [Indexed: 06/07/2023]
Abstract
Vyacheslav Vasilevich (V.V.) Klimov (or Slava, as most of us called him) was born on January 12, 1945 and passed away on May 9, 2017. He began his scientific career at the Bach Institute of Biochemistry of the USSR Academy of Sciences (Akademy Nauk (AN) SSSR), Moscow, Russia, and then, he was associated with the Institute of Photosynthesis, Pushchino, Moscow Region, for about 50 years. He worked in the field of biochemistry and biophysics of photosynthesis. He is known for his studies on the molecular organization of photosystem II (PSII). He was an eminent scientist in the field of photobiology, a well-respected professor, and, above all, an outstanding researcher. Further, he was one of the founding members of the Institute of Photosynthesis in Pushchino, Russia. To most, Slava Klimov was a great human being. He was one of the pioneers of research on the understanding of the mechanism of light energy conversion and of water oxidation in photosynthesis. Slava had many collaborations all over the world, and he is (and will be) very much missed by the scientific community and friends in Russia as well as around the World. We present here a brief biography and some comments on his research in photosynthesis. We remember him as a friendly and enthusiastic person who had an unflagging curiosity and energy to conduct outstanding research in many aspects of photosynthesis, especially that related to PSII.
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Affiliation(s)
- Suleyman I Allakhverdiev
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, Russia, 142290.
- Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow, Russia, 127276.
- Bionanotechnology Laboratory, Institute of Molecular Biology and Biotechnology, Azerbaijan National Academy of Sciences, Baku, Azerbaijan.
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia, 119991.
| | - Sergey K Zharmukhamedov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, Russia, 142290
- Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow, Russia, 127276
| | - Margarita V Rodionova
- Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow, Russia, 127276
| | - Vladimir A Shuvalov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, Russia, 142290
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia, 119991
| | - Charles Dismukes
- Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, NJ, 08854, USA
| | - Jian-Ren Shen
- Research Institute for Interdisciplinary Science, Graduate School of Natural Science and Technology, Okayama University, Okayama, 7008530, Japan
| | - James Barber
- Department of Life Sciences, Imperial College, London, SW7 2AZ, UK
| | - Göran Samuelsson
- Department of Plant Physiology, Umeå Plant Science Centre, Umeå University, 90736, Umeå, Sweden
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Zharmukhamedov SK, Allakhverdiev SI, Smolova TN, Klimov VV. Bicarbonate stimulates the electron donation from Mn²⁺ to P₆₈₀⁺ in isolated D1/D2/cytochrome b559 complex. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY. B, BIOLOGY 2013; 129:87-92. [PMID: 24201105 DOI: 10.1016/j.jphotobiol.2013.10.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2013] [Revised: 10/01/2013] [Accepted: 10/01/2013] [Indexed: 06/02/2023]
Abstract
Influence of bicarbonate on the efficiency of the electron donation from Mn(2+) to P₆₈₀(+) in isolated D1/D2/cytochrome b559 complex was investigated. All the experiments were carried out in a medium depleted of HCO₃(-)/CO₂. Kinetics of photoinduced absorbance changes (ΔA) at different wavelengths and decrease of chlorophyll fluorescence yield (-ΔF) related to photoaccumulation of reduced pheophytin, the intermediary electron acceptor of photosystem II (PSII), in the presence of Mn(2+) under anaerobic conditions were measured. Addition of bicarbonate (1 mM) increased the amplitude of these ΔA and -ΔF at least by a factor of 3. Measurements of the photoinduced ΔA, related to photooxidation of the primary electron donor of PSII, chlorophyll P₆₈₀, were done in the presence of silicomolybdate as electron acceptor. These results show that the addition of 0.05 mM Mn(2+) alone or jointly with 1 mM bicarbonate induces a 20% and 70%-decrease of the magnitude of the ΔA at 680 nm. The effect of Mn(2+) (in the presence and absence of bicarbonate) was completely eliminated by the addition of 12 mM EDTA. All these bicarbonate effects were not observed if MgCl₂ or formate were used instead of MnCl₂ and bicarbonate, respectively. In the absence of Mn(2+), bicarbonate induced none of the mentioned above effects (increase of photoaccumulation of reduced pheophytin and decrease of photooxidation of P680). The presented data suggest that bicarbonate stimulates the electron donation from Mn(2+) to D1/D2/cyt b559 reaction center evidently due to formation of easily oxidizable Mn-bicarbonate complexes.
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Affiliation(s)
- S K Zharmukhamedov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia.
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Shevela D, Nöring B, Koroidov S, Shutova T, Samuelsson G, Messinger J. Efficiency of photosynthetic water oxidation at ambient and depleted levels of inorganic carbon. PHOTOSYNTHESIS RESEARCH 2013; 117:401-12. [PMID: 23828399 DOI: 10.1007/s11120-013-9875-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2013] [Accepted: 06/20/2013] [Indexed: 05/09/2023]
Abstract
Over 40 years ago, Joliot et al. (Photochem Photobiol 10:309-329, 1969) designed and employed an elegant and highly sensitive electrochemical technique capable of measuring O2 evolved by photosystem II (PSII) in response to trains of single turn-over light flashes. The measurement and analysis of flash-induced oxygen evolution patterns (FIOPs) has since proven to be a powerful method for probing the turnover efficiency of PSII. Stemler et al. (Proc Natl Acad Sci USA 71(12):4679-4683, 1974), in Govindjee's lab, were the first to study the effect of "bicarbonate" on FIOPs by adding the competitive inhibitor acetate. Here, we extend this earlier work by performing FIOPs experiments at various, strictly controlled inorganic carbon (Ci) levels without addition of any inhibitors. For this, we placed a Joliot-type bare platinum electrode inside a N2-filled glove-box (containing 10-20 ppm CO2) and reduced the Ci concentration simply by washing the samples in Ci-depleted media. FIOPs of spinach thylakoids were recorded either at 20-times reduced levels of Ci or at ambient Ci conditions (390 ppm CO2). Numerical analysis of the FIOPs within an extended Kok model reveals that under Ci-depleted conditions the miss probability is discernibly larger (by 2-3 %) than at ambient conditions, and that the addition of 5 mM HCO3 (-) to the Ci-depleted thylakoids largely restores the original miss parameter. Since a "mild" Ci-depletion procedure was employed, we discuss our data with respect to a possible function of free or weakly bound HCO3 (-) at the water-splitting side of PSII.
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Affiliation(s)
- Dmitriy Shevela
- Department of Chemistry, Chemical Biological Centre, University of Umeå, 90187, Umeå, Sweden,
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Shevela D, Eaton-Rye JJ, Shen JR, Govindjee. Photosystem II and the unique role of bicarbonate: a historical perspective. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2012; 1817:1134-51. [PMID: 22521596 DOI: 10.1016/j.bbabio.2012.04.003] [Citation(s) in RCA: 105] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2012] [Revised: 04/05/2012] [Accepted: 04/06/2012] [Indexed: 12/11/2022]
Abstract
In photosynthesis, cyanobacteria, algae and plants fix carbon dioxide (CO(2)) into carbohydrates; this is necessary to support life on Earth. Over 50 years ago, Otto Heinrich Warburg discovered a unique stimulatory role of CO(2) in the Hill reaction (i.e., O(2) evolution accompanied by reduction of an artificial electron acceptor), which, obviously, does not include any carbon fixation pathway; Warburg used this discovery to support his idea that O(2) in photosynthesis originates in CO(2). During the 1960s, a large number of researchers attempted to decipher this unique phenomenon, with limited success. In the 1970s, Alan Stemler, in Govindjee's lab, perfected methods to get highly reproducible results, and observed, among other things, that the turnover of Photosystem II (PSII) was stimulated by bicarbonate ions (hydrogen carbonate): the effect would be on the donor or the acceptor, or both sides of PSII. In 1975, Thomas Wydrzynski, also in Govindjee's lab, discovered that there was a definite bicarbonate effect on the electron acceptor (the plastoquinone) side of PSII. The most recent 1.9Å crystal structure of PSII, unequivocally shows HCO(3)(-) bound to the non-heme iron that sits in-between the bound primary quinone electron acceptor, Q(A), and the secondary quinone electron acceptor Q(B). In this review, we focus on the historical development of our understanding of this unique bicarbonate effect on the electron acceptor side of PSII, and its mechanism as obtained by biochemical, biophysical and molecular biological approaches in many laboratories around the World. We suggest an atomic level model in which HCO(3)(-)/CO(3)(2-) plays a key role in the protonation of the reduced Q(B). In addition, we make comments on the role of bicarbonate on the donor side of PSII, as has been extensively studied in the labs of Alan Stemler (USA) and Vyacheslav Klimov (Russia). We end this review by discussing the uniqueness of bicarbonate's role in oxygenic photosynthesis and its role in the evolutionary development of O(2)-evolving PSII. This article is part of a Special Issue entitled: Photosynthesis Research for Sustainability: from Natural to Artificial.
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Affiliation(s)
- Dmitriy Shevela
- Centre for Organelle Research, University of Stavanger, Stavanger, Norway.
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Shitov AV, Zharmukhamedov SK, Shutova TV, Allakhverdiev SI, Samuelsson G, Klimov VV. A carbonic anhydrase inhibitor induces bicarbonate-reversible suppression of electron transfer in pea photosystem 2 membrane fragments. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY. B, BIOLOGY 2011; 104:366-71. [PMID: 21530302 DOI: 10.1016/j.jphotobiol.2011.04.001] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2011] [Revised: 04/01/2011] [Accepted: 04/01/2011] [Indexed: 12/31/2022]
Abstract
The effects of suppression of the carbonic anhydrase (CA) activity by a CA-inhibitor, acetazolamide (AA), on the photosynthetic activities of photosystem II (PS II) particles from higher plants were investigated. AA along with CA-activity inhibits the PS II photosynthetic electron transfer and the AA-induced suppression is totally reversed by the addition of bicarbonate (3-5 mM). Similar effect of recovery in the PS II photosynthetic activity was also revealed upon the addition of known artificial electron donors (potassium ferrocyanide and TMPD). Significance and possible functions of CA for the PS II donor side are discussed.
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Affiliation(s)
- A V Shitov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia.
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Kozlov Y, Tikhonov K, Zastrizhnaya O, Klimov V. pH dependence of the composition and stability of MnIII–bicarbonate complexes and its implication for redox interaction of MnII with photosystemII. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2010; 101:362-6. [DOI: 10.1016/j.jphotobiol.2010.08.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2010] [Revised: 08/17/2010] [Accepted: 08/18/2010] [Indexed: 10/19/2022]
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Pobeguts OV, Smolova TN, Timoshevsky DS, Klimov VV. Interaction of bicarbonate with the manganese-stabilizing protein of photosystem II. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY. B, BIOLOGY 2010; 100:30-7. [PMID: 20466559 DOI: 10.1016/j.jphotobiol.2010.04.005] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2010] [Revised: 04/13/2010] [Accepted: 04/14/2010] [Indexed: 10/19/2022]
Abstract
The effect of reversible removal of HCO(3)(-) on structural re-arrangements in the Mn-stabilizing protein (MSP) of photosystem II, isolated from pea leaves, was studied using measurements of characteristic alterations in fluorescence of hydrophobic probe 8-anilino-1-naphthalene-sulfonic acid (ANS). It was shown that the treatments capable of removal of HCO(3)(-) (or CO(2)) from possible binding sites in MSP (pH lowering from 6.5 to 3.5, addition of a structurally similar anion HCO(3)(-) in concentration 1-20mM or air evacuation at pH 3.5) result in a significant (up to 370%) increase of ANS fluorescence (indicative of structural changes in MSP), whereas HCO(3)(-) lowers the ANS fluorescence to the initial level observed in untreated protein at pH 6.5. Since the effects are revealed at (sub)micromolar concentrations of HCO(3)(-), the specific high-affinity binding of HCO(3)(-) (or CO(2)) to MSP (required for its native structure preservation) is proposed. Possible bicarbonate binding sites and its physiological role within the water-oxidizing complex of photosystem II are discussed.
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Affiliation(s)
- Olga V Pobeguts
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia.
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Khorobrykh AA, Terentyev VV, Zharmukhamedov SK, Klimov VV. Redox interaction of Mn-bicarbonate complexes with reaction centres of purple bacteria. Philos Trans R Soc Lond B Biol Sci 2008; 363:1245-51; discussion 1251. [PMID: 17971330 DOI: 10.1098/rstb.2007.2221] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
It is found that dark reduction of photooxidized primary electron donor P870+ in reaction centres from purple anoxygenic bacteria (two non-sulphur Fe-oxidizing Rhodovulum iodosum and Rhodovulum robiginosum, Rhodobacter sphaeroides R-26 and sulphur alkaliphilic Thiorhodospira sibirica) is accelerated upon the addition of Mn2+ jointly with bicarbonate (30-75 mM). The effect is not observed if Mn2+ and HCO3(-) have been replaced by Mg2+ and HCO2(-), respectively. The dependence of the effect on bicarbonate concentration suggests that formation of Mn2+-bicarbonate complexes, Mn(HCO3)+ and/or Mn(HCO3)2, is required for re-reduction of P870+ with Mn2+. The results are considered as experimental evidence for a hypothesis on possible participation of Mn-bicarbonate complexes in the evolutionary origin of oxygenic photosynthesis in the Archean era.
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Affiliation(s)
- A A Khorobrykh
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia
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Shevela D, Su JH, Klimov V, Messinger J. Hydrogencarbonate is not a tightly bound constituent of the water-oxidizing complex in photosystem II. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2008; 1777:532-9. [PMID: 18439416 DOI: 10.1016/j.bbabio.2008.03.031] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2008] [Revised: 03/17/2008] [Accepted: 03/18/2008] [Indexed: 11/17/2022]
Abstract
Since the end of the 1950s hydrogencarbonate ('bicarbonate') is discussed as a possible cofactor of photosynthetic water-splitting, and in a recent X-ray crystallography model of photosystem II (PSII) it was displayed as a ligand of the Mn(4)O(x)Ca cluster. Employing membrane-inlet mass spectrometry (MIMS) and isotope labelling we confirm the release of less than one (~0.3) HCO(3)(-) per PSII upon addition of formate. The same amount of HCO(3)(-) release is observed upon formate addition to Mn-depleted PSII samples. This suggests that formate does not replace HCO(3)(-) from the donor side, but only from the non-heme iron at the acceptor side of PSII. The absence of a firmly bound HCO(3)(-) is corroborated by showing that a reductive destruction of the Mn(4)O(x)Ca cluster inside the MIMS cell by NH(2)OH addition does not lead to any CO(2)/HCO(3)(-) release. We note that even after an essentially complete HCO(3)(-)/CO(2) removal from the sample medium by extensive degassing in the MIMS cell the PSII samples retain > or =75% of their initial flash-induced O(2)-evolving capacity. We therefore conclude that HCO(3)(-) has only 'indirect' effects on water-splitting in PSII, possibly by being part of a proton relay network and/or by participating in assembly and stabilization of the water-oxidizing complex.
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Affiliation(s)
- Dmitriy Shevela
- Max-Planck-Institut für Bioanorganische Chemie, D 45470 Mülheim an der an Ruhr, Germany
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Aoyama C, Suzuki H, Sugiura M, Noguchi T. Flash-Induced FTIR Difference Spectroscopy Shows No Evidence for the Structural Coupling of Bicarbonate to the Oxygen-Evolving Mn Cluster in Photosystem II. Biochemistry 2008; 47:2760-5. [DOI: 10.1021/bi702241t] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Chika Aoyama
- Institute of Materials Science, University of Tsukuba, Tsukuba, Ibaraki 305-8573, Japan, and Department of Plant Biosciences, School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, Osaka 599-8531, Japan
| | - Hiroyuki Suzuki
- Institute of Materials Science, University of Tsukuba, Tsukuba, Ibaraki 305-8573, Japan, and Department of Plant Biosciences, School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, Osaka 599-8531, Japan
| | - Miwa Sugiura
- Institute of Materials Science, University of Tsukuba, Tsukuba, Ibaraki 305-8573, Japan, and Department of Plant Biosciences, School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, Osaka 599-8531, Japan
| | - Takumi Noguchi
- Institute of Materials Science, University of Tsukuba, Tsukuba, Ibaraki 305-8573, Japan, and Department of Plant Biosciences, School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, Osaka 599-8531, Japan
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Shevela D, Klimov V, Messinger J. Interactions of photosystem II with bicarbonate, formate and acetate. PHOTOSYNTHESIS RESEARCH 2007; 94:247-64. [PMID: 17653834 DOI: 10.1007/s11120-007-9200-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2006] [Accepted: 05/16/2007] [Indexed: 05/16/2023]
Abstract
In this study, we probe the effects of bicarbonate (hydrogencarbonate), BC, removal from photosystem II in spinach thylakoids by measuring flash-induced oxygen evolution patterns (FIOPs) with a Joliot-type electrode. For this we compared three commonly employed methods: (1) washing in BC-free medium, (2) formate addition, and (3) acetate addition. Washing of the samples with buffers depleted of BC and CO2 by bubbling with argon (Method 1) under our conditions leads to an increase in the double hit parameter of the first flash (beta 1), while the miss parameter and the overall activity remain unchanged. In contrast, addition of 40-50 mM formate or acetate results in a significant increase in the miss parameter and to an approximately 50% (formate) and approximately 10% (acetate) inhibition of the overall oxygen evolution activity, but not to an increased beta 1 parameter. All described effects could be reversed by washing with formate/acetate free buffer and/or addition of 2-10 mM bicarbonate. The redox potential of the water-oxidizing complex (WOC) in samples treated by Method 1 is compared to samples containing 2 mM bicarbonate in two ways: (1) The lifetimes of the S0, S2, and S3 states were measured, and no differences were found between the two sample types. (2) The S1, S0, S(-1), and S(-2) states were probed by incubation with small concentrations of NH2OH. These experiments displayed a subtle, yet highly reproducible difference in the apparent Si/S(-i) state distribution which is shown to arise from the interaction of BC with PSII in the already reduced states of the WOC. These data are discussed in detail by also taking into account the CO2 concentrations present in the buffers after argon bubbling and during the measurements. These values were measured by membrane-inlet mass spectrometry (MIMS).
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Affiliation(s)
- Dmitriy Shevela
- Max-Planck-Institut für Bioanorganische Chemie, Stiftstrasse 34-36, 45470, Mülheim an der Ruhr, Germany
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Tikhonov KG, Zastrizhnaya OM, Kozlov YN, Klimov VV. Composition and catalase-like activity of Mn(II)-bicarbonate complexes. BIOCHEMISTRY (MOSCOW) 2007; 71:1270-7. [PMID: 17140389 DOI: 10.1134/s0006297906110137] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
The composition and catalase-like activity of Mn2+ complexes with bicarbonate were investigated with voltammetry and kinetic methods (by the rate of O2 production from H2O2). Three linear sections were revealed on the dependence of the reduction potential of Mn2+ on logarithm of bicarbonate concentration (logC(NaHCO3)) having slopes equal to 0 mV/logC(NaHCO3), -14 mV/logC(NaHCO3), and -59 mV/logC(NaHCO3), corresponding to Mn2+ aqua complex (Mn2+(aq)) and to Mn2+-bicarbonate complexes of the composition [Mn2+(HCO3(-))]+ (at concentration of HCO3(-) 10-100 mM) and [Mn2+(HCO3(-))2]0 (at concentration of HCO3(-) 100-600 mM). Comparison of HCO3(-) concentration needed for the catalase-like activity of Mn2+ with the electrochemical data showed that only electroneutral complex Mn2+(HCO3(-))2 catalyzed decomposition of H2O2, whereas positively charged Mn2+(aq) complex and [Mn2+(HCO3(-))]+ were not active. The catalase-like activity of Mn2+ did not appear upon substitution of anions of carbonic acids (acetate and formate) for HCO3(-). The rate of O2 production in the system Mn2+-HCO3(-)-H2O2 (pH 7.4) is proportional to the second power of Mn2+ concentration and to the fourth power of HCO3(-) concentration that indicates simultaneous involvement of two Mn2+(HCO3(-))2 complexes in the reaction of H2O2 decomposition.
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Affiliation(s)
- K G Tikhonov
- Institute of Basic Biological Problems, Russian Academy of Sciences, 142290 Pushchino, Moscow Region, Russia
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Jajoo A, Katsuta N, Kawamori A. An EPR study of the pH dependence of formate effects on Photosystem II. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2006; 44:186-92. [PMID: 16762561 DOI: 10.1016/j.plaphy.2006.04.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2005] [Indexed: 05/10/2023]
Abstract
Effects of formate on rates of O(2) evolution and electron paramagnetic resonance (EPR) signals were observed in the oxygen evolving PS II membranes as a function of pH. In formate treated PS II membranes, decrease in pH value resulted in the inhibition of the O(2) evolving activity, a decrease in the intensity of S(2) state multiline signal but an increase in the intensity of the Q(A)(-)Fe(2+) EPR signal. Time-resolved EPR study of the Y(Z)(*) decay kinetics showed that the light-induced intensity of Y(Z)(*) EPR signal was proportional to the formate concentration. The change in the pH affected both the light-induced intensities and the decay rates of Y(Z)(*), which was found to be faster at lower pH. At 253 K, t(1/e) value of Y(Z)(*) decay kinetics was found to be 8-10 s at pH 6.0 and 18-21 s at pH 5.0. The results presented here indicate that the extent of inhibition at the donor and the acceptor side of PS II due to formate is pH dependent, being more effective at lower pH.
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Affiliation(s)
- Anjana Jajoo
- School of Life Sciences, Devi Ahilya Vishwavidyalaya, Indore 452 017, India.
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17
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Shevela DN, Khorobrykh AA, Klimov VV. Effect of bicarbonate on the water-oxidizing complex of photosystem II in the super-reduced S-states. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2006; 1757:253-61. [PMID: 16797261 DOI: 10.1016/j.bbabio.2006.04.004] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2005] [Revised: 04/01/2006] [Accepted: 04/04/2006] [Indexed: 11/23/2022]
Abstract
It is shown that the hydrazine-induced transition of the water-oxidizing complex (WOC) to super-reduced S-states depends on the presence of bicarbonate in the medium so that after a 20 min treatment of isolated spinach thylakoids with 3 mM NH(2)NH(2) at 20 degrees C in the CO(2)/HCO(3)(-)-depleted buffer the S-state populations are: 42% of S(-3), 42% of S(-2), 16% of S(-1) and even formal S(-4) state is reached, while in the presence of 2 mM NaHCO(3), the same treatment produces 30% of S(-3), 38% of S(-2), and 32% of S(-1) and there is no indication of the S(-4) state. Bicarbonate requirement for the oxygen-evolving activity, very low in untreated thylakoids, considerably increases upon the transition of the WOC to the super-reduced S-states, and the requirement becomes low again when the WOC returns back to the normal S-states using pre-illumination. The results are discussed as a possible indication of ligation of bicarbonate to manganese ions within the WOC.
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Affiliation(s)
- Dmitriy N Shevela
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia
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18
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Kozlov YN, Zharmukhamedov SK, Tikhonov KG, Dasgupta J, Kazakova AA, Charles Dismukes G, Klimov VV. Oxidation potentials and electron donation to photosystem II of manganese complexes containing bicarbonate and carboxylate ligands. Phys Chem Chem Phys 2004. [DOI: 10.1039/b406569g] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Dismukes GC, Klimov VV, Baranov SV, Kozlov YN, DasGupta J, Tyryshkin A. The origin of atmospheric oxygen on Earth: the innovation of oxygenic photosynthesis. Proc Natl Acad Sci U S A 2001; 98:2170-5. [PMID: 11226211 PMCID: PMC30111 DOI: 10.1073/pnas.061514798] [Citation(s) in RCA: 174] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2000] [Indexed: 01/17/2023] Open
Abstract
The evolution of O(2)-producing cyanobacteria that use water as terminal reductant transformed Earth's atmosphere to one suitable for the evolution of aerobic metabolism and complex life. The innovation of water oxidation freed photosynthesis to invade new environments and visibly changed the face of the Earth. We offer a new hypothesis for how this process evolved, which identifies two critical roles for carbon dioxide in the Archean period. First, we present a thermodynamic analysis showing that bicarbonate (formed by dissolution of CO(2)) is a more efficient alternative substrate than water for O(2) production by oxygenic phototrophs. This analysis clarifies the origin of the long debated "bicarbonate effect" on photosynthetic O(2) production. We propose that bicarbonate was the thermodynamically preferred reductant before water in the evolution of oxygenic photosynthesis. Second, we have examined the speciation of manganese(II) and bicarbonate in water, and find that they form Mn-bicarbonate clusters as the major species under conditions that model the chemistry of the Archean sea. These clusters have been found to be highly efficient precursors for the assembly of the tetramanganese-oxide core of the water-oxidizing enzyme during biogenesis. We show that these clusters can be oxidized at electrochemical potentials that are accessible to anoxygenic phototrophs and thus the most likely building blocks for assembly of the first O(2) evolving photoreaction center, most likely originating from green nonsulfur bacteria before the evolution of cyanobacteria.
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Affiliation(s)
- G C Dismukes
- Department of Chemistry, Hoyt Laboratory, Princeton University, Princeton, NJ 08544, USA.
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21
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Ananyev GM, Zaltsman L, Vasko C, Dismukes GC. The inorganic biochemistry of photosynthetic oxygen evolution/water oxidation. BIOCHIMICA ET BIOPHYSICA ACTA 2001; 1503:52-68. [PMID: 11115624 DOI: 10.1016/s0005-2728(00)00215-2] [Citation(s) in RCA: 91] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
At the request of the organizer of this special edition, we have attempted to do several things in this manuscript: (1) we present a mini-review of recent, selected, works on the light-induced inorganic biogenesis (photoactivation), composition and structure of the inorganic core responsible for photosynthetic water oxidation; (2) we summarize a new proposal for the evolutionary origin of the water oxidation catalyst which postulates a key role for bicarbonate in formation of the inorganic core; (3) we summarize published studies and present new results on what has been learned from studies of 'inorganic mutants' in which the endogenous cofactors (Mn(n+), Ca2+, Cl-) are substituted; (4) the first DeltapH changes measured during the photoactivation process are reported and used to develop a model for the stepwise photo-assembly process; (5) a comparative analysis is given of data in the literature on the kinetics of substrate water exchange and peroxide binding/dismutation which support a mechanistic model for water oxidation in general; (6) we discuss alternative interpretations of data in the literature with a view to forecast new avenues where progress is needed.
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Affiliation(s)
- G M Ananyev
- Princeton University Department of Chemistry, Hoyt Laboratory, Princeton, NJ 09544, USA
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Klimov VV, Baranov SV. Bicarbonate requirement for the water-oxidizing complex of photosystem II. BIOCHIMICA ET BIOPHYSICA ACTA 2001; 1503:187-96. [PMID: 11115633 DOI: 10.1016/s0005-2728(00)00222-x] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
It is well established that bicarbonate stimulates electron transfer between the primary and secondary electron acceptors, Q(A) and Q(B), in formate-inhibited photosystem II; the non-heme Fe between Q(A) and Q(B) plays an essential role in the bicarbonate binding. Strong evidence of a bicarbonate requirement for the water-oxidizing complex (WOC), both O2 evolving and assembling from apo-WOC and Mn2+, of photosystem II (PSII) preparations has been presented in a number of publications during the last 5 years. The following explanations for the involvement of bicarbonate in the events on the donor side of PSII are considered: (1) bicarbonate serves as an electron donor (alternative to water or as a way of involvement of water molecules in the oxidative reactions) to the Mn-containing O2 center; (2) bicarbonate facilitates reassembly of the WOC from apo-WOC and Mn2+ due to formation of the complexes MnHCO3+ and Mn(HCO3)2 leading to an easier oxidation of Mn2+ with PSII; (3) bicarbonate is an integral component of the WOC essential for its function and stability; it may be considered a direct ligand to the Mn cluster; (4) the WOC is stabilized by bicarbonate through its binding to other components of PSII.
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Affiliation(s)
- V V Klimov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, 142290, Moscow Region, Russia.
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Yruela I, Allakhverdiev SI, Ibarra JV, Klimov VV. Bicarbonate binding to the water-oxidizing complex in the photosystem II. A Fourier transform infrared spectroscopy study. FEBS Lett 1998; 425:396-400. [PMID: 9563501 DOI: 10.1016/s0014-5793(98)00271-3] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
The light-induced Fourier transform infrared difference (FT-IR) spectrum originating from the donor side of O2-evolving photosystem (PS) II was obtained in non-depleted and CO2-depleted PSII membrane preparations. The observed spectrum free of contributions from the acceptor side signals was achieved by employing 2 mM/18 mM ferri-/ferrocyanide as a redox couple. This spectrum showed main positive bands at 1589 and 1365 cm(-1) and negative bands at 1560, 1541, 1522 and 1507 cm(-1). CO-depleted PSII preparations showed a quite different spectrum. The main positive and negative bands disappeared after depletion of bicarbonate. The addition of bicarbonate partially restored those bands again. Comparison between difference FT-IR spectra of untreated and bicarbonate-depleted PSII membranes indicated that the positive bands at 1589 and 1365 cm(-1) can be assigned to COO- stretching modes from bicarbonate. The higher frequency corresponds to u[as] (COO-) and the lower frequency to u[s] (COO-). 13C-Labeling FT-IR measurements confirmed these findings and also suggested that the negative band at 1560 cm(-1) can be ascribed to u[as] (COO-). The data are discussed in the framework of the suggestion that bicarbonate can be a ligand to the Mn-containing water-oxidizing complex of PSII.
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Affiliation(s)
- I Yruela
- Estación Experimental Aula Dei, Consejo Superior de Investigaciones Científicas, Zaragoza, Spain.
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Hulsebosch RJ, Allakhverdiev SI, Klimov VV, Picorel R, Hoff AJ. Effect of bicarbonate on the S2 multiline EPR signal of the oxygen-evolving complex in photosystem II membrane fragments. FEBS Lett 1998; 424:146-8. [PMID: 9539139 DOI: 10.1016/s0014-5793(98)00163-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Removal of bicarbonate from spinach photosystem II BBY particles by means of washing in a CO2-free medium results in the loss of their capability to accumulate the S2 multiline EPR signal upon continuous illumination at 190 K. Addition of 1 mM NaHCO3 before illumination leads to a 50-60% restoration of the multiline signal. Similarly, in BBY particles depleted of Mn by treatment with 1 M Tris-HCl (pH 8.0) and 0.5 M MgCl2, re-addition of MnCl2 in the presence of 1 mM NaHCO3 results in a partial restoration (approximately 30%) of the S2 multiline EPR signal of the Mn cluster, while in the absence of NaHCO3 no restoration is observed. The results provide further evidence that bicarbonate is essential for maintaining the Mn-containing oxygen-evolving complex of PS II in a functionally active form.
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Affiliation(s)
- R J Hulsebosch
- Department of Biophysics, Leiden University, The Netherlands
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Klimov VV, Baranov SV, Allakhverdiev SI. Bicarbonate protects the donor side of photosystem II against photoinhibition and thermoinactivation. FEBS Lett 1997; 418:243-6. [PMID: 9428721 DOI: 10.1016/s0014-5793(97)01392-6] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
The rate of photoinhibition of photosystem II (PSII) activities (photoinduced change of chlorophyll fluorescence yield, deltaF, and photoreduction of 2,6-dichlorophenol-indophenol) in O2-evolving pea subchloroplast membrane fragments in medium depleted of CO2 was considerably decreased upon addition of 5 mM NaHCO3 before the light treatment. A similar effect was observed when 100 microM MnCl2 was added before the photoinhibition. In PSII membrane fragments depleted of Mn, the preillumination led to irreversible loss of the capability of PSII to be reactivated by Mn2+, and the rate of the photoinhibition was decreased by a factor of 2 or 5 if the pre-illumination was done in the presence of 0.2 microM MnCl2 (approximately 4 Mn per PSII reaction center) added alone or in combination with 5 mM NaHCO3, respectively. A similar protective effect of bicarbonate was also revealed in the dark, during thermoinactivation of O2-evolving PSII at 40 degrees C: the rate of thermoinactivation of deltaF was decreased by a factor of 3 if 5 mM NaHCO3 was added to the medium. The results are consistent with the idea that bicarbonate is an essential component of the Mn-containing water-oxidizing complex of PSII, which decreases its susceptibility to photoinhibition and thermoinactivation.
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Affiliation(s)
- V V Klimov
- Institute of Soil Science and Photosynthesis, Russian Academy of Sciences, Pushchino, Moscow.
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Allakhverdiev SI, Yruela I, Picorel R, Klimov VV. Bicarbonate is an essential constituent of the water-oxidizing complex of photosystem II. Proc Natl Acad Sci U S A 1997; 94:5050-4. [PMID: 11038543 PMCID: PMC24629 DOI: 10.1073/pnas.94.10.5050] [Citation(s) in RCA: 53] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
It is shown that restoration of photoinduced electron flow and O2 evolution with Mn2+ in Mn-depleted photosystem II (PSII) membrane fragments isolated from spinach chloroplasts is considerably increased with bicarbonate in the region pH 5.0-8.0 in bicarbonate-depleted medium. In buffered solutions equilibrated with the atmosphere (nondepleted of bicarbonate), the bicarbonate effect is observed only at pH lower than the pK of H2CO3 dissociation (6.4), which indicates that HCO3- is the essential species for the restoration effect. The addition of just 2 Mn2+ atoms per one PSII reaction center is enough for the maximal reactivation when bicarbonate is present in the medium. Analysis of bicarbonate concentration dependence of the restoration effect reveals two binding sites for bicarbonate with apparent dissociation constant (Kd) of approximately 2.5 microM and 20-34 microM when 2,6-dichloro-p-benzoquinone is used as electron acceptor, while in the presence of silicomolybdate only the latter one remains. Similar bicarbonate concentration dependence of O2 evolution was obtained in untreated Mn-containing PSII membrane fragments. It is suggested that the Kd of 20-34 microM is associated with the donor side of PSII while the location of the lower Kd binding site is not quite clear. The conclusion is made that bicarbonate is an essential constituent of the water-oxidizing complex of PSII, important for its assembly and maintenance in the functionally active state.
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Affiliation(s)
- S I Allakhverdiev
- Institute of Soil Science and Photosynthesis, Russian Academy of Sciences, Pushchino, Moscow Region, 142292, Russian Federation
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