DNA base composition of species of the genus Saccharomyces

A novel specific DNA marker in Saccharomyces bayanus for species identification of the Saccharomyces sensu stricto complex

This study was based on RAPD fingerprinting for species identification of the Saccharomyces sensu stricto complex. 40 random primers were used for RAPD analysis. The results showed that one of these primers, OPT-18, produced a 974 bp species-specific band, which was only found in the tested S. bayanus. Afterward this specific fragment was isolated from agarose gel and ligated into vector for DNA sequencing. A pair of primer SpeOPT18Sbay-F2 and SpeOPT18Sbay-R2 were designed according to the cloned species-specific sequence, which was employed for PCR with the template DNA of the S. sensu stricto strains, single 779 bp species-specific band was only found in S. bayanus. Therefore, we conclude that our novel species DNA marker could be used to rapidly and accurately identify the species of S. bayanus from S. sensu stricto complex by direct PCR.

A mitochondrial molecular marker, ori-rep-tra, for differentiation of yeast species

Yeasts exhibit various mechanisms for the inheritance of their mitochondrial genomes. Differences among these mechanisms are based on variations within nuclear as well as mitochondrial genetic elements. Here we report diagnostic differences in the presence of biologically active mitochondrial intergenic sequences, ori-reptra, among related yeasts in the genera Saccharomyces, Arxiozyma, Debaryomyces, Kluyveromyces, Pachytichospora, Torulaspora, and Zygosaccharomyces. A molecular probe containing ori-rep-tra can be employed specifically for the differentiation and identification of isolates belonging to the species complex Saccharomyces sensu stricto.

DNA fingerprinting of yeast strains by restriction enzyme analysis

Restriction endonuclease analysis was used as a new method to obtain genomic DNA fingerprints in yeast. Fifteen yeast strains belonging to the genera Saccharomyces and Zygosaccharomyces were examined. Restriction fragments obtained with ApaI or KspI endonucleases were separated by SDS-PAGE and silver-stained. Analysis of the fingerprints showed that restriction enzyme digestion of genomic DNA can be successfully applied to yeast, enabling the differentiation between strains belonging to different or to the same species or genera.

Cloning, sequence, and disruption of the Saccharomyces diastaticus DAR1 gene encoding a glycerol-3-phosphate dehydrogenase

The Saccharomyces diastaticus DAR1 gene was cloned by complementation in an Escherichia coli strain auxogrophic for glycerol-3-phosphate. DAR1 encodes an NADH-dependent dihydroxyacetone phosphate reductase (sn-glycerol-3-phosphate dehydrogenase [G3PDase; EC 1.1.1.8]) homologous to several other eukaryotic G3PDases. DAR1 is distinct from GUT2, which encodes a glucose-repressed mitochondrial G3PDase, but is identical to GPD1 from S. cerevisiae, a close relative of S. diastaticus. The level of DAR1-encoded G3PDase was increased about threefold in a medium of high osmolarity. Disruption of DAR1 in a haploid S. cerevisiae was not lethal but led to a decrease in cytoplasmic NADH-dependent G3PDase activity, an increase in osmotic sensitivity, and a 25% reduction in glycerol secretion from cells grown anaerobically on glucose.

Immuno-assay techniques for detecting yeasts in foods

A brief literature review on immuno-assay of yeast cell wall antigens is given. Special attention is paid to extracellular, thermostable yeast antigens (EPS), which are released to the growth medium by many yeast species. The EPS of Saccharomyces cerevisiae and of Stephanoascus ciferrii (syn. Candida ciferrii) could be specifically and sensitively detected by a sandwich ELISA, using an IgG raised in rabbits immunized with the EPS of these yeasts. The EPS ELISA of three basidiomycetous yeasts tested was not specific, that of Geotrichum candidum was genus-specific but was not sensitive. The EPS of Zygosaccharomyces bailii could be detected in a highly specific competitive ELISA but not in a sandwich ELISA or in a latex agglutination test.

Electrophoretic karyotyping as a taxonomic tool in the genus Saccharomyces

The electrophoretic karyotypes of strains of the ten species of the yeast genus Saccharomyces (sensu Vaughan-Martini & Martini 1992) were determined by the CHEF (contour-clamped homogeneous electric field) system of pulsed field gel electrophoresis. The number of bands was found to vary from 6 to 17 and the calculated molecular weights of haploid genomes ranged from 7.9 to 14.6 Mbp. The type strains of S. exiguus and the four species of the Saccharomyces sensu stricto complex (S. bayanus, S. cerevisiae, S. paradoxus and S. pastorianus) have genomes comprised of chromosomes of all three size classes: light (< 500 kb), medium (500-1000 kb) and heavy (> 1,000 kb). Saccharomyces kluyveri DNA has only heavy bands, while the remaining species exhibit medium and heavy chromosomes. When more than one strain of each species was examined, it was seen that while the species S. bayanus, S. castellii, S. cerevisiae, S. kluyveri, S. paradoxus and S. pastorianus showed uniform karyotypes, S. dairensis, S. exiguus, S. servazzii and S. unisporus comprise heterogeneous taxa.

Cell wall antigenic homology in certain species of Saccharomyces and an enzyme-linked immunosorbent assay for rapid identification of S. cerevisiae

Cell-wall antigenic studies on Saccharomyces species grown by fermentation in 20% glucose broth indicated S. cerevisiae to develop two antigens specific for this species. These antigens were heat-stable polysaccharides and agglutination studies using specific antiserum prepared by cross absorption indicated their localization on the cell-wall surfaces. Using species-specific antibody, the results presented describe a specific and rapid identification of S. cerevisiae by ELISA according to the classification system of Yarrow (1984).

Three newly delimited species of Saccharomyces sensu stricto

Deoxyribonucleic acid reassociation studies of 24 different wine and beer-associated strains of Saccharomyces confirmed the presence of three separate species. S. cerevisiae and S. bayanus strains had only 22% of their genomes in common. S. pastorianus, with intermediate hybridization values between S. cerevisiae and S. bayanus (52 and 72%, respectively) could possibly be a natural hybrid of the two species. S. pastorianus replaces S. carlsbergensis with which it is homologous for 93% of its genome, since the former species was described first by Hansen in 1904. These data do not agree with the results of traditional physiological tests.

Order and orientation of genic sequences in circular mitochondrial DNA from Saccharomyces exiguus: implications for evolution of yeast mtDNAs

Mapping of sequences specifying the large and small ribosomal RNAs and six polypeptides in the circular 23.7 kbp mitochondrial DNA of Saccharomyces exiguus has shown that these genes have the same orientation and that a 5 gene cluster is common to this DNA and the 18.9 kbp mtDNA from Torulopsis glabrata. Included in the preserved region are juxtaposed sequences specifying ATPase subunits 6 and 9 which have the same order and orientation as analogous genes in the Escherichia coli unc operon. The above data, together with knowledge that these two sequences are dispersed in larger yeast mtDNAs, leads us to suggest that larger forms are derived from a smaller ancestral molecule that would have had some resemblance to the mtDNAs of S. exiguus and T. glabrata.

The growth of Saccharomyces cerevisiae CBS 426 on mixtures of glucose and ethanol: a model

Saccharomyces cerevisiae CBS 426 was grown in continuous culture in a defined medium with a mixture of glucose and ethanol as carbon source. Growth on ethanol as the sole carbon source was only possible after the addition of a small amount of glutamic acid. The flows of glucose, ethanol, oxygen, carbon dioxide and biomass to and from the system were measured and a model for the growth of the yeast on the carbon sources constructed. The model is shown to allow independent estimation of YATP and P/O. YATP is not independent of the substrate used, but the amount of ATP used in the production of biomass from the monomers is approximately the same for growth on ethanol and on glucose.

Hybridization studies within the genus Kluyveromyces van der Walt emend. van der Walt

Hybridization studies based on the prototrophic selection technique, involving the use of auxotrophic mutants of strains of all accepted species of the genus Kluyveromyces, are reported. Two main groups of mutally interfertile taxa were established withinthe genus. the first group comprises Kluyveromyces bulgaricus, K. cicerisporus, K. dobzhanskii, K. drosophilarus, K. fragilis, K. lactis; K. marxianus, K. phaseolosporus, K. vanudenii and K. wileenii. The second group consists of K. doazhanskii, K. drosophilarum, K. lactis, K. vanudenii and K. wickerhamii. Hybrids were also detected in crosses involving K. drosophilarum and K. waltii as well as K. marxianus and K. thermotolerans. In terms of the concept of the biological species and in compliance with requirements of the International Code of Botanical Nomenclature, taxa which hybridize with K. marxianus and form fertile recombinants at frequencies observed in intraspecific crosses, are accepted as varieties of K. marxianus.

DNA sequence similarity, cell wall mannans and physiological characteristics in some strains of Candida utilis, Hansenula jadinii and Hansenula petersonii

The physiological characteristics, proton magnetic resonance spectra of cell wall mannans, DNA base composition and DNA sequence similarity of some strains of Candida utilis, Hansenula jadinii and Hansenula petersonii were examined. It was found that C. utilis was not distinguishable from H. jadinii by any of these criteria. These findings show the close genetic relationship between C. utilis and its perfect form H. jadinii. In contrast, H. petersonii was found to differ from C. utilis and H. jadinii on account of insignificant DNA reassociation as well as a number of other properties.

[Systematic study of Saccharomyces: oxidases and vitamin requirements]

A study of the genus Saccharomyces by new biocharacters demonstrates indirectly the genotype of each species; intracellular osidases (lactose - maltose -cellobiase - melibiase - invertase - trehalase) and vitamin requirements (biotin-folic acid-inositol-niacine-pantothénate-para-aminobenzoic acid-pyridozine-thiamine) reveal some phylogenetic links between the species. It appears that Van der Walt's group I is very homogeneous and must be restricted to only 7 species. The torulospora group seems very similar to the genus Debaryomyces when vitamin needs and osidases are considered; the relations between the 2 groups are discussed. When other biocharacters are studied (nitrite reductase-immunological properties, etc. ...) the value in the GC content (4-5% lower in Debaryomyces) will be established. These results confirm that intracellular oxidases and vitamin needs are very valuable tools for systematic criteria.