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Xia D, Nie W, Li X, Finlay RD, Lian B. Secondary products and molecular mechanism of calcium oxalate degradation by the strain Azospirillum sp. OX-1. Sci Rep 2024; 14:23506. [PMID: 39379461 PMCID: PMC11461619 DOI: 10.1038/s41598-024-74939-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Accepted: 09/30/2024] [Indexed: 10/10/2024] Open
Abstract
The oxalate-carbonate pathway (OCP) involves degradation of soil oxalate to carbonate. To exploit and manage this natural mineralization of assimilated atmospheric CO2 into stable carbonates, improved understanding of this complex biotransformation process is needed. A strain of oxalate-degrading bacteria, Azospirillum sp. OX-1, was isolated from soil, and its secondary products of calcium oxalate degradation were analyzed and characterized using SEM, XRD, TG/DTG-DTA and FTIR-spectroscopy. The molecular mechanism of calcium oxalate degradation was also analyzed using proteomics. The results showed, for the first time, that OX-1 could not only degrade calcium oxalate to calcium carbonate, but also that the process was accompanied by synthesis of methane. Proteomic analysis demonstrated that OX-1 has a dual enzyme system for calcium oxalate degradation, using formyl-CoA transferase (FRC) and thiamine pyrophosphate (ThDP)-dependent oxalyl-CoA decarboxylase (OXC) to form calcium carbonate. Up-regulated expression of enzymes related to methane synthesis was also detected during calcium oxalate degradation. Since methane is also a potent greenhouse gas, these new results suggest that the utility of exploiting the OCP to reduce atmospheric CO2 must be re-evaluated and that further studies should be conducted to reveal how widespread the methane producing capacity of strain OX-1 is in other bacteria and soil environments.
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Affiliation(s)
- Dening Xia
- College of Life Sciences, College of Marine Science and Engineering, Nanjing Normal University, Nanjing, 210023, China
| | - Wenjun Nie
- College of Life Sciences, College of Marine Science and Engineering, Nanjing Normal University, Nanjing, 210023, China
| | - Xiaofang Li
- College of Life Sciences, College of Marine Science and Engineering, Nanjing Normal University, Nanjing, 210023, China
| | - Roger D Finlay
- Department of Forest Mycology and Plant Pathology, Uppsala BioCenter, Swedish University of Agricultural Sciences, Uppsala, 75007, Sweden
| | - Bin Lian
- College of Life Sciences, College of Marine Science and Engineering, Nanjing Normal University, Nanjing, 210023, China.
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Gatz-Miller HS, Gérard F, Su D, Mayer KU. Two-dimensional modeling of CO 2 mineral trapping through the oxalate‑carbonate pathway: Influence of the root system model. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 904:166280. [PMID: 37586515 DOI: 10.1016/j.scitotenv.2023.166280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 08/08/2023] [Accepted: 08/11/2023] [Indexed: 08/18/2023]
Abstract
Two-dimensional reactive transport models, one with a simplified root system and the other accounting for dynamically evolving root architecture, were constructed to examine the influence of model complexity on capturing the effect of soil-root dynamics relating to the Oxalate Carbonate Pathway (OCP) of the Iroko tree over 170 years. Oxidation of oxalate from fallen tree tissue by soil bacteria enables local soil pH increase, leading to the sequestration of atmospheric carbon in carbonate minerals (calcite) in the shallow soil surrounding the tree. Simulations of both root models corroborate previous one-dimensional models of the OCP focused on Ca and C mass balance, where high weathering rates of Ca-containing silicate minerals in bedrock, along with contributions from groundwater, provided sufficient Ca for precipitation of observed quantities of calcite. Both simulations demonstrate the development of a distinct high pH zone where oxalate is oxidized, Ca accumulates, and calcite precipitates (OCP zone); and a low pH zone where roots collect Ca, later returned to the top soil as calcium oxalate (Total Root Extent/TRE zone) via litterfall. While the extent of OCP zone development near the ground surface was very similar between simulations, differences in localized root water uptake between the two approaches resulted in variation in water and solute transport and influenced the geometry of the OCP zone at depth, with implications for calcite precipitation in the soil. Trends in CO2 and O2 partial pressures in the OCP zone were mirrored in the TRE zone, suggesting linkage between the two zones with regard to gas transport. Near the end of the tree's lifespan, results indicate that soil permeability decreases due to calcite precipitation may limit O2 ingress and availability in the shallow soil, while trapping CO2 released from the oxidation of organics in the shallow soil, with implications for the long-term sustainability of the OCP itself.
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Affiliation(s)
- Hannah S Gatz-Miller
- Department of Earth, Ocean, and Atmospheric Sciences, University of British Columbia, Vancouver, B.C., Canada.
| | - Frédéric Gérard
- INRAe-IRD-Institut Agro-CIRAD, University of Montpellier, UMR Eco&Sols, Montpellier, France
| | - Danyang Su
- Department of Earth, Ocean, and Atmospheric Sciences, University of British Columbia, Vancouver, B.C., Canada
| | - K Ulrich Mayer
- Department of Earth, Ocean, and Atmospheric Sciences, University of British Columbia, Vancouver, B.C., Canada
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Cadmium-Tolerant Bacteria in Cacao Farms from Antioquia, Colombia: Isolation, Characterization and Potential Use to Mitigate Cadmium Contamination. Processes (Basel) 2022. [DOI: 10.3390/pr10081457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
Bioremediation of farm soil is a technique that merits in-depth research. There are few studies related to the use of bioremediation to reduce cadmium (Cd) availability in soils used for cacao production. This study investigates (1) field bioprospection and strain characterization using techniques including isothermal microcalorimetry to select a group of cadmium-tolerant bacteria (CdtB) for potential use as bioremediators of cacao soils and (2) the application of bacterial inoculum to compare the immobilization of Cd under field conditions. Bioprospection was carried out in four cacao farms from the Antioquia district in Colombia. Culturable CdtB strains were isolated using CdCl2 as a Cd source and identified using molecular techniques. The metabolic characterization of Cd immobilization was carried out using isothermal microcalorimetry with CdCl2 amendments. Five cadmium-tolerant bacteria were isolated and characterized as Bacillus spp. The strain CdtB14 showed better growth and Cd immobilization ability (estimated through heat ratios) than any strain isolated thus far, suggesting potential for future use in bioproduct development. Furthermore, the application of two previously characterized CdtB strains with zeolite powder was performed in the same farms where the bioprospection process was carried out. The application of the preformulated inoculum resulted in a decrease of 0.30 + 0.1 mg kg−1 of soil Cd in two out of the four assessed farms. The field results are preliminary and require data on the change in Cd in cacao beans to understand what this result means for Cd mitigation. This study is the first to combine bioprospecting and the performance of CdtB in laboratory and field experiments in cacao farms and shows the potential of bioremediation to mitigate Cd contamination in cacao.
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Hervé V, Simon A, Randevoson F, Cailleau G, Rajoelison G, Razakamanarivo H, Bindschedler S, Verrecchia E, Junier P. Functional Diversity of the Litter-Associated Fungi from an Oxalate-Carbonate Pathway Ecosystem in Madagascar. Microorganisms 2021; 9:microorganisms9050985. [PMID: 34062900 PMCID: PMC8147286 DOI: 10.3390/microorganisms9050985] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Revised: 04/28/2021] [Accepted: 04/29/2021] [Indexed: 11/16/2022] Open
Abstract
The oxalate-carbonate pathway (OCP) is a biogeochemical process linking oxalate oxidation and carbonate precipitation. Currently, this pathway is described as a tripartite association involving oxalogenic plants, oxalogenic fungi, and oxalotrophic bacteria. While the OCP has recently received increasing interest given its potential for capturing carbon in soils, there are still many unknowns, especially regarding the taxonomic and functional diversity of the fungi involved in this pathway. To fill this gap, we described an active OCP site in Madagascar, under the influence of the oxalogenic tree Tamarindus indica, and isolated, identified, and characterized 50 fungal strains from the leaf litter. The fungal diversity encompassed three phyla, namely Mucoromycota, Ascomycota, and Basidiomycota, and 23 genera. Using various media, we further investigated their functional potential. Most of the fungal strains produced siderophores and presented proteolytic activities. The majority were also able to decompose cellulose and xylan, but only a few were able to solubilize inorganic phosphate. Regarding oxalate metabolism, several strains were able to produce calcium oxalate crystals while others decomposed calcium oxalate. These results challenge the current view of the OCP by indicating that fungi are both oxalate producers and degraders. Moreover, they strengthen the importance of the role of fungi in C, N, Ca, and Fe cycles.
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Affiliation(s)
- Vincent Hervé
- Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, 2000 Neuchâtel, Switzerland; (A.S.); (G.C.); (S.B.); (P.J.)
- Laboratory of Biogeosciences, Institute of Earth Surface Dynamics, University of Lausanne, 1015 Lausanne, Switzerland; (F.R.); (E.V.)
- Max Planck Institute for Terrestrial Microbiology, 35043 Marburg, Germany
- Correspondence: ; Tel.: +49-6421178122
| | - Anaële Simon
- Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, 2000 Neuchâtel, Switzerland; (A.S.); (G.C.); (S.B.); (P.J.)
| | - Finaritra Randevoson
- Laboratory of Biogeosciences, Institute of Earth Surface Dynamics, University of Lausanne, 1015 Lausanne, Switzerland; (F.R.); (E.V.)
| | - Guillaume Cailleau
- Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, 2000 Neuchâtel, Switzerland; (A.S.); (G.C.); (S.B.); (P.J.)
- Laboratory of Biogeosciences, Institute of Earth Surface Dynamics, University of Lausanne, 1015 Lausanne, Switzerland; (F.R.); (E.V.)
| | - Gabrielle Rajoelison
- Ecole Supérieure des Sciences Agronomiques, Université d’Antananarivo, Antananarivo 101, Madagascar;
| | | | - Saskia Bindschedler
- Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, 2000 Neuchâtel, Switzerland; (A.S.); (G.C.); (S.B.); (P.J.)
| | - Eric Verrecchia
- Laboratory of Biogeosciences, Institute of Earth Surface Dynamics, University of Lausanne, 1015 Lausanne, Switzerland; (F.R.); (E.V.)
| | - Pilar Junier
- Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, 2000 Neuchâtel, Switzerland; (A.S.); (G.C.); (S.B.); (P.J.)
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Braissant O, Astasov-Frauenhoffer M, Waltimo T, Bonkat G. A Review of Methods to Determine Viability, Vitality, and Metabolic Rates in Microbiology. Front Microbiol 2020; 11:547458. [PMID: 33281753 PMCID: PMC7705206 DOI: 10.3389/fmicb.2020.547458] [Citation(s) in RCA: 69] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Accepted: 10/08/2020] [Indexed: 12/21/2022] Open
Abstract
Viability and metabolic assays are commonly used as proxies to assess the overall metabolism of microorganisms. The variety of these assays combined with little information provided by some assay kits or online protocols often leads to mistakes or poor interpretation of the results. In addition, the use of some of these assays is restricted to simple systems (mostly pure cultures), and care must be taken in their application to environmental samples. In this review, the necessary data are compiled to understand the reactions or measurements performed in many of the assays commonly used in various aspects of microbiology. Also, their relationships to each other, as metabolism links many of these assays, resulting in correlations between measured values and parameters, are discussed. Finally, the limitations of these assays are discussed.
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Affiliation(s)
- Olivier Braissant
- Department of Biomedical Engineering, Faculty of Medicine, University of Basel, Allschwil, Switzerland
| | | | - Tuomas Waltimo
- Department Research, University Center for Dental Medicine, University of Basel, Basel, Switzerland
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Grzesiak J, Kaczyńska A, Gawor J, Żuchniewicz K, Aleksandrzak-Piekarczyk T, Gromadka R, Zdanowski MK. A smelly business: Microbiology of Adélie penguin guano (Point Thomas rookery, Antarctica). THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 714:136714. [PMID: 31978775 DOI: 10.1016/j.scitotenv.2020.136714] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Revised: 01/03/2020] [Accepted: 01/13/2020] [Indexed: 05/25/2023]
Abstract
Adélie penguins (Pygoscelis adeliae) are the most numerous flightless bird group breeding in coastal areas of Maritime and Continental Antarctica. Their activity leaves a mark on the land in the form of large guano deposits. This guano is an important nutrient source for terrestrial habitats of ice-free Antarctic areas, most notably by being the source of ammonia vapors which feed the surrounding grass, lichen and algae communities. Although investigated by researchers, the fate of the guano-associated microbial community and its role in decomposition processes remain vague. Therefore, by employing several direct community assessment methods combined with a broad culture-based approach we provide data on bacterial numbers, their activity and taxonomic affiliation in recently deposited and decayed Adélie penguin guano sampled at the Point Thomas rookery in Maritime Antarctica (King George Island). Our research indicates that recently deposited guano harbored mostly bacteria of penguin gut origin, presumably inactive in cold rookery settings. This material was rich in mesophilic enzymes active also at low temperatures, likely mediating early stage decomposition. Fresh guano colonization by environmental bacteria was minor, accomplished mostly by ammonia scavenging Jeotgalibaca sp. cells. Decayed guano contained 10-fold higher bacterial numbers with cold-active enzymes dominating the samples. Guano was colonized by uric-acid degrading and lipolytic Psychrobacter spp. and proteolytic Chryseobacterium sp. among others. Several spore-forming bacteria of penguin gut origin persisted in highly decomposed material, most notably uric-acid fermenting members of the Gottschalkiaceae family.
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Affiliation(s)
- Jakub Grzesiak
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106 Warszawa, Poland.
| | - Agata Kaczyńska
- Pomeranian University in Słupsk, Arciszewskiego 22A, 76-200 Słupsk, Poland
| | - Jan Gawor
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106 Warszawa, Poland
| | - Karolina Żuchniewicz
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106 Warszawa, Poland
| | | | - Robert Gromadka
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106 Warszawa, Poland
| | - Marek K Zdanowski
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106 Warszawa, Poland
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7
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Marina M, Romero FM, Villarreal NM, Medina AJ, Gárriz A, Rossi FR, Martinez GA, Pieckenstain FL. Mechanisms of plant protection against two oxalate-producing fungal pathogens by oxalotrophic strains of Stenotrophomonas spp. PLANT MOLECULAR BIOLOGY 2019; 100:659-674. [PMID: 31187392 DOI: 10.1007/s11103-019-00888-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2018] [Accepted: 05/30/2019] [Indexed: 06/09/2023]
Abstract
Oxalotrophic Stenotrophomonas isolated from tomato rhizosphere are able to protect plants against oxalate-producing pathogens by a combination of actions including induction of plant defence signalling callose deposition and the strengthening of plant cell walls and probably the degradation of oxalic acid. Oxalic acid plays a pivotal role in the virulence of the necrotrophic fungi Botrytis cinerea and Sclerotinia sclerotiorum. In this work, we isolated two oxalotrophic strains (OxA and OxB) belonging to the bacterial genus Stenotrophomonas from the rhizosphere of tomato plants. Both strains were capable to colonise endophytically Arabidopsis plants and protect them from the damage caused by high doses of oxalic acid. Furthermore, OxA and OxB protected Arabidopsis from S. sclerotiorum and B. cinerea infections. Bacterial inoculation induced the production of phenolic compounds and the expression of PR-1. Besides, both isolates exerted a protective effect against fungal pathogens in Arabidopsis mutants affected in the synthesis pathway of salicylic acid (sid2-2) and jasmonate perception (coi1). Callose deposition induced by OxA and OxB was required for protection against phytopathogens. Moreover, B. cinerea and S. sclerotiorum mycelial growth was reduced in culture media containing cell wall polysaccharides from leaves inoculated with each bacterial strain. These findings suggest that cell walls from Arabidopsis leaves colonised by these bacteria would be less susceptible to pathogen attack. Our results indicate that these oxalotrophic bacteria can protect plants against oxalate-producing pathogens by a combination of actions and show their potential for use as biological control agents against fungal diseases.
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Affiliation(s)
- María Marina
- Instituto Tecnológico Chascomús, Universidad Nacional de General San Martín-Consejo Nacional de Investigaciones Científicas y Técnicas (INTECH/UNSAM-CONICET), Av. Intendente Marino Km 8,200 CC164, Chascomús, Argentina.
| | - Fernando M Romero
- Instituto Tecnológico Chascomús, Universidad Nacional de General San Martín-Consejo Nacional de Investigaciones Científicas y Técnicas (INTECH/UNSAM-CONICET), Av. Intendente Marino Km 8,200 CC164, Chascomús, Argentina
| | - Natalia M Villarreal
- Instituto Tecnológico Chascomús, Universidad Nacional de General San Martín-Consejo Nacional de Investigaciones Científicas y Técnicas (INTECH/UNSAM-CONICET), Av. Intendente Marino Km 8,200 CC164, Chascomús, Argentina
| | - Andrés J Medina
- Centro de Investigaciones Cardiovasculares "Horacio Cingolani" Facultad de Ciencias Médicas (UNLP), La Plata, Argentina
| | - Andrés Gárriz
- Instituto Tecnológico Chascomús, Universidad Nacional de General San Martín-Consejo Nacional de Investigaciones Científicas y Técnicas (INTECH/UNSAM-CONICET), Av. Intendente Marino Km 8,200 CC164, Chascomús, Argentina
| | - Franco R Rossi
- Instituto Tecnológico Chascomús, Universidad Nacional de General San Martín-Consejo Nacional de Investigaciones Científicas y Técnicas (INTECH/UNSAM-CONICET), Av. Intendente Marino Km 8,200 CC164, Chascomús, Argentina
| | - Gustavo A Martinez
- Instituto Tecnológico Chascomús, Universidad Nacional de General San Martín-Consejo Nacional de Investigaciones Científicas y Técnicas (INTECH/UNSAM-CONICET), Av. Intendente Marino Km 8,200 CC164, Chascomús, Argentina
- Instituto de Fisiología Vegetal (INFIVE), Facultad de Ciencias Agrarias y Forestales - Facultad de Ciencias Naturales y Museo (UNLP-CONICET), La Plata, Argentina
| | - Fernando L Pieckenstain
- Instituto Tecnológico Chascomús, Universidad Nacional de General San Martín-Consejo Nacional de Investigaciones Científicas y Técnicas (INTECH/UNSAM-CONICET), Av. Intendente Marino Km 8,200 CC164, Chascomús, Argentina
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Bravo D, Pardo‐Díaz S, Benavides‐Erazo J, Rengifo‐Estrada G, Braissant O, Leon‐Moreno C. Cadmium and cadmium‐tolerant soil bacteria in cacao crops from northeastern Colombia. J Appl Microbiol 2018; 124:1175-1194. [DOI: 10.1111/jam.13698] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2017] [Revised: 12/14/2017] [Accepted: 01/09/2018] [Indexed: 11/30/2022]
Affiliation(s)
- D. Bravo
- Laboratory of Soil Microbiology and Calorimetry Corporación Colombiana de Investigación Agropecuaria – Corpoica Centro de Investigación Tibaitatá – kilómetro 14 vía Mosquera‐Bogotá Cundinamarca Colombia
| | - S. Pardo‐Díaz
- Laboratory of Soil Microbiology and Calorimetry Corporación Colombiana de Investigación Agropecuaria – Corpoica Centro de Investigación Tibaitatá – kilómetro 14 vía Mosquera‐Bogotá Cundinamarca Colombia
| | | | - G. Rengifo‐Estrada
- Corporación Colombiana de Investigación Agropecuaria – Corpoica, Centro de Investigación La Suiza – kilómetro 32 vía al mar vereda Galápagos Rionegro Santander Colombia
| | - O. Braissant
- Center of Biomechanics & Calorimetry Basel (COB) University of Basel Basel Switzerland
| | - C. Leon‐Moreno
- Corporación Colombiana de Investigación Agropecuaria – Corpoica, Centro de Investigación La Suiza – kilómetro 32 vía al mar vereda Galápagos Rionegro Santander Colombia
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Anstoetz M, Clark MW, Yee LH. Response Surface Optimisation of an Oxalate–Phosphate–Amine Metal–Organic Framework (OPA-MOF) of Iron and Urea. J Inorg Organomet Polym Mater 2017. [DOI: 10.1007/s10904-017-0547-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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10
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Hervé V, Junier T, Bindschedler S, Verrecchia E, Junier P. Diversity and ecology of oxalotrophic bacteria. World J Microbiol Biotechnol 2016; 32:28. [PMID: 26748805 DOI: 10.1007/s11274-015-1982-3] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2015] [Accepted: 11/16/2015] [Indexed: 11/27/2022]
Abstract
Oxalate is present in environments as diverse as soils or gastrointestinal tracts. This organic acid can be found as free acid or forming metal salts (e.g. calcium, magnesium). Oxalotrophy, the ability to use oxalate as carbon and energy sources, is mainly the result of bacterial catabolism, which can be either aerobic or anaerobic. Although some oxalotrophic bacterial strains are commonly used as probiotics, little is known about the diversity and ecology of this functional group. This review aims at exploring the taxonomic distribution and the phylogenetic diversity of oxalotrophic bacteria across biomes. In silico analyses were conducted using the two key enzymes involved in oxalotrophy: formyl-coenzyme A (CoA) transferase (EC 2.8.3.16) and oxalyl-CoA decarboxylase (EC 4.1.1.8), encoded by the frc and oxc genes, respectively. Our analyses revealed that oxalate-degrading bacteria are restricted to three phyla, namely Actinobacteria, Firmicutes and Proteobacteria and originated from terrestrial, aquatic and clinical environments. Diversity analyses at the protein level suggest that total Oxc diversity is more constrained than Frc diversity and that bacterial oxalotrophic diversity is not yet fully described. Finally, the contribution of oxalotrophic bacteria to ecosystem functioning as well as to the carbon cycle is discussed.
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Affiliation(s)
- Vincent Hervé
- Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, Rue Emile-Argand 11, 2000, Neuchâtel, Switzerland
- Laboratory of Biogeosciences, Institute of Earth Sciences, University of Lausanne, Geopolis, 1015, Lausanne, Switzerland
| | - Thomas Junier
- Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, Rue Emile-Argand 11, 2000, Neuchâtel, Switzerland
- Vital-IT Group, Swiss Institute of Bioinformatics, Genopode, 1015, Lausanne, Switzerland
| | - Saskia Bindschedler
- Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, Rue Emile-Argand 11, 2000, Neuchâtel, Switzerland
| | - Eric Verrecchia
- Laboratory of Biogeosciences, Institute of Earth Sciences, University of Lausanne, Geopolis, 1015, Lausanne, Switzerland
| | - Pilar Junier
- Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, Rue Emile-Argand 11, 2000, Neuchâtel, Switzerland.
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11
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Simon A, Bindschedler S, Job D, Wick LY, Filippidou S, Kooli WM, Verrecchia EP, Junier P. Exploiting the fungal highway: development of a novel tool for thein situisolation of bacteria migrating along fungal mycelium. FEMS Microbiol Ecol 2015; 91:fiv116. [DOI: 10.1093/femsec/fiv116] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/27/2015] [Indexed: 01/06/2023] Open
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