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Craig A, Moodie LWK, Hawkes JA. Preparation of Simple Bicyclic Carboxylate-Rich Alicyclic Molecules for the Investigation of Dissolved Organic Matter. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:7078-7086. [PMID: 38608252 PMCID: PMC11044592 DOI: 10.1021/acs.est.4c00166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 04/03/2024] [Accepted: 04/03/2024] [Indexed: 04/14/2024]
Abstract
Dissolved organic matter (DOM) is a vast and complex chemical mixture that plays a key role in the mediation of the global carbon cycle. Fundamental understanding of the source and fate of oceanic organic matter is obscured due to poor definition of the key molecular contributors to DOM, which limits accurate sample analysis and prediction of the Earth's carbon cycle. Previous work has attempted to define the components of the DOM through a variety of chromatographic and spectral techniques. However, modern preparative and analytical methods have not isolated or unambiguously identified molecules from DOM. Therefore, previously proposed structures are based solely on the mixture's aggregate properties and do not accurately describe any true individual molecular component. In addition to this, there is a lack of appropriate analogues of the individual chemical classes within DOM, limiting the scope of experiments that probe the physical, chemical, and biological contributions from each class. To address these problems, we synthesized a series of analogues of carboxylate-rich alicyclic molecules (CRAM), a molecular class hypothesized to exist as a major contributor to DOM. Key analytical features of the synthetic CRAMs were consistent with marine DOM, supporting their suitability as chemical substitutes for CRAM. This new approach provides access to a molecular toolkit that will enable previously inaccessible experiments to test many unproven hypotheses surrounding the ever-enigmatic DOM.
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Affiliation(s)
- Alexander
J. Craig
- Analytical
Chemistry, Department of Chemistry BMC, Uppsala University, Uppsala 752 37, Sweden
- Drug
Design and Discovery, Department of Medicinal Chemistry, Uppsala University, Uppsala 752 37, Sweden
| | - Lindon W. K. Moodie
- Drug
Design and Discovery, Department of Medicinal Chemistry, Uppsala University, Uppsala 752 37, Sweden
| | - Jeffrey A. Hawkes
- Analytical
Chemistry, Department of Chemistry BMC, Uppsala University, Uppsala 752 37, Sweden
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2
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Zhao R, Zhao W, Dai Y, Zhou J, Xu X, Wang F, Zhang Q, Zhang Y, Zhang W. Photochemical evolution of the molecular composition of dissolved organic carbon and dissolved brown carbon from wood smoldering. ENVIRONMENT INTERNATIONAL 2024; 186:108629. [PMID: 38582060 DOI: 10.1016/j.envint.2024.108629] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Revised: 03/19/2024] [Accepted: 04/02/2024] [Indexed: 04/08/2024]
Abstract
Recently, extreme wildfires occur frequently around the world and emit substantial brown carbon (BrC) into the atmosphere, whereas the molecular compositions and photochemical evolution of BrC remain poorly understood. In this work, primary smoke aerosols were generated from wood smoldering, and secondary smoke aerosols were formed by the OH radical photooxidation in an oxidation flow reactor, where both primary and secondary smoke samples were collected on filters. After solvent extraction of filter samples, the molecular composition of dissolved organic carbon (DOC) was determined by Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS). The molecular composition of dissolved BrC was obtained based on the constraints of DOC formulae. The proportion of dissolved BrC fractions accounted for approximately 1/3-1/2 molecular formulae of DOC. The molecular characteristics of dissolved BrC showed higher levels of carbon oxidation state, double bond equivalents, and modified aromaticity index than those of DOC, indicating that dissolved BrC fractions were a class of organic structures with relatively higher oxidation state, unsaturated and aromatic degree in DOC fractions. The comparative analysis suggested that aliphatic and olefinic structures dominated DOC fractions (contributing to 70.1%-76.9%), while olefinic, aromatic, and condensed aromatic structures dominated dissolved BrC fractions (contributing to 97.5%-99.9%). It is worth noting that dissolved BrC fractions only contained carboxylic-rich alicyclic molecules (CRAMs)-like structures, unsaturated hydrocarbons, aromatic structures, and highly oxygenated compounds. CRAMs-like structures were the most abundant species in both DOC and dissolved BrC fractions. Nevertheless, the specific molecular characteristics for DOC and dissolved BrC fractions varied with subgroups after aging. The results highlight the similarities and differences in the molecular compositions and characteristics of DOC and dissolved BrC fractions with aging. This work will provide insights into understanding the molecular composition of DOC and dissolved BrC in smoke.
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Affiliation(s)
- Ranran Zhao
- School of Chemistry and Chemical Engineering, Yancheng Institute of Technology, Yancheng 224051, Jiangsu, China; School of Emergency Management and Safety Engineering, Yancheng Institute of Technology, Yancheng 224051, Jiangsu, China; Laboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics and Fine Mechanics, HFIPS, Chinese Academy of Sciences, Hefei 230031, Anhui, China.
| | - Weixiong Zhao
- Laboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics and Fine Mechanics, HFIPS, Chinese Academy of Sciences, Hefei 230031, Anhui, China; School of Environmental Science and Optoelectronic Technology, University of Science and Technology of China, Hefei 230026, Anhui, China
| | - Yong Dai
- School of Chemistry and Chemical Engineering, Yancheng Institute of Technology, Yancheng 224051, Jiangsu, China; School of Emergency Management and Safety Engineering, Yancheng Institute of Technology, Yancheng 224051, Jiangsu, China
| | - Jiacheng Zhou
- Laboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics and Fine Mechanics, HFIPS, Chinese Academy of Sciences, Hefei 230031, Anhui, China
| | - Xuezhe Xu
- Laboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics and Fine Mechanics, HFIPS, Chinese Academy of Sciences, Hefei 230031, Anhui, China
| | - Feng Wang
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng 224051, Jiangsu, China
| | - Qixing Zhang
- State Key Laboratory of Fire Science, University of Science and Technology of China, Hefei 230026, Anhui, China.
| | - Yongming Zhang
- State Key Laboratory of Fire Science, University of Science and Technology of China, Hefei 230026, Anhui, China
| | - Weijun Zhang
- Laboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics and Fine Mechanics, HFIPS, Chinese Academy of Sciences, Hefei 230031, Anhui, China; School of Environmental Science and Optoelectronic Technology, University of Science and Technology of China, Hefei 230026, Anhui, China
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3
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Li S, Harir M, Bastviken D, Schmitt-Kopplin P, Gonsior M, Enrich-Prast A, Valle J, Hertkorn N. Dearomatization drives complexity generation in freshwater organic matter. Nature 2024; 628:776-781. [PMID: 38658683 PMCID: PMC11043043 DOI: 10.1038/s41586-024-07210-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Accepted: 02/20/2024] [Indexed: 04/26/2024]
Abstract
Dissolved organic matter (DOM) is one of the most complex, dynamic and abundant sources of organic carbon, but its chemical reactivity remains uncertain1-3. Greater insights into DOM structural features could facilitate understanding its synthesis, turnover and processing in the global carbon cycle4,5. Here we use complementary multiplicity-edited 13C nuclear magnetic resonance (NMR) spectra to quantify key substructures assembling the carbon skeletons of DOM from four main Amazon rivers and two mid-size Swedish boreal lakes. We find that one type of reaction mechanism, oxidative dearomatization (ODA), widely used in organic synthetic chemistry to create natural product scaffolds6-10, is probably a key driver for generating structural diversity during processing of DOM that are rich in suitable polyphenolic precursor molecules. Our data suggest a high abundance of tetrahedral quaternary carbons bound to one oxygen and three carbon atoms (OCqC3 units). These units are rare in common biomolecules but could be readily produced by ODA of lignin-derived and tannin-derived polyphenols. Tautomerization of (poly)phenols by ODA creates non-planar cyclohexadienones, which are subject to immediate and parallel cycloadditions. This combination leads to a proliferation of structural diversity of DOM compounds from early stages of DOM processing, with an increase in oxygenated aliphatic structures. Overall, we propose that ODA is a key reaction mechanism for complexity acceleration in the processing of DOM molecules, creation of new oxygenated aliphatic molecules and that it could be prevalent in nature.
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Affiliation(s)
- Siyu Li
- Research Unit Analytical Biogeochemistry (BGC), Helmholtz Munich, German Research Center for Environmental Health, Neuherberg, Germany
| | - Mourad Harir
- Research Unit Analytical Biogeochemistry (BGC), Helmholtz Munich, German Research Center for Environmental Health, Neuherberg, Germany
- Chair of Analytical Food Chemistry, Technische Universität München, Freising-Weihenstephan, Germany
| | - David Bastviken
- Department of Thematic Studies - Environmental Change, Linköping University, Linköping, Sweden
| | - Philippe Schmitt-Kopplin
- Research Unit Analytical Biogeochemistry (BGC), Helmholtz Munich, German Research Center for Environmental Health, Neuherberg, Germany
- Chair of Analytical Food Chemistry, Technische Universität München, Freising-Weihenstephan, Germany
| | - Michael Gonsior
- Chesapeake Biological Laboratory, University of Maryland Center for Environmental Science, Solomons, MD, USA
| | - Alex Enrich-Prast
- Department of Thematic Studies - Environmental Change, Linköping University, Linköping, Sweden
- Institute of Marine Science, Federal University of São Paulo, Santos, Brazil
| | - Juliana Valle
- Research Unit Analytical Biogeochemistry (BGC), Helmholtz Munich, German Research Center for Environmental Health, Neuherberg, Germany
| | - Norbert Hertkorn
- Research Unit Analytical Biogeochemistry (BGC), Helmholtz Munich, German Research Center for Environmental Health, Neuherberg, Germany.
- Department of Thematic Studies - Environmental Change, Linköping University, Linköping, Sweden.
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4
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Ghosh Biswas R, Bermel W, Jenne A, Soong R, Simpson MJ, Simpson AJ. HR-MAS DREAMTIME NMR for Slow Spinning ex Vivo and in Vivo Samples. Anal Chem 2023; 95:17054-17063. [PMID: 37934172 DOI: 10.1021/acs.analchem.3c03800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2023]
Abstract
HR-MAS NMR is a powerful tool, capable of monitoring molecular changes in intact heterogeneous samples. However, one of the biggest limitations of 1H NMR is its narrow spectral width which leads to considerable overlap in complex natural samples. DREAMTIME NMR is a highly selective technique that allows users to isolate suites of metabolites from congested spectra. This permits targeted metabolomics by NMR and is ideal for monitoring specific processes. To date, DREAMTIME has only been employed in solution-state NMR, here it is adapted for HR-MAS applications. At high spinning speeds (>5 kHz), DREAMTIME works with minimal modifications. However, spinning over 3-4 kHz leads to cell lysis, and if maintaining sample integrity is necessary, slower spinning (<2.5 kHz) is required. Very slow spinning (≤500 Hz) is advantageous for in vivo analysis to increase organism survival; however, sidebands from water pose a problem. To address this, a version of DREAMTIME, termed DREAMTIME-SLOWMAS, is introduced. Both techniques are compared at 2500, 500, and 50 Hz, using ex vivo worm tissue. Following this, DREAMTIME-SLOWMAS is applied to monitor key metabolites of anoxic stress in living shrimp at 500 Hz. Thus, standard DREAMTIME works well under MAS conditions and is recommended for samples reswollen in D2O or spun >2500 Hz. For slow spinning in vivo or intact tissue samples, DREAMTIME-SLOWMAS provides an excellent way to target process-specific metabolites while maintaining sample integrity. Overall, DREAMTIME should find widespread application wherever targeted molecular information is required from complex samples with a high degree of spectral overlap.
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Affiliation(s)
| | - Wolfgang Bermel
- Bruker Biospin GmbH, Rudolf-Plank-Str. 23, 76275 Ettlingen, Germany
| | - Amy Jenne
- Environmental NMR Centre, University of Toronto, Toronto, ON M1C 1A4, Canada
| | - Ronald Soong
- Environmental NMR Centre, University of Toronto, Toronto, ON M1C 1A4, Canada
| | - Myrna J Simpson
- Environmental NMR Centre, University of Toronto, Toronto, ON M1C 1A4, Canada
| | - Andre J Simpson
- Environmental NMR Centre, University of Toronto, Toronto, ON M1C 1A4, Canada
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5
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Glöckler D, Harir M, Schmitt-Kopplin P, Elsner M, Bakkour R. Selectivity of β-Cyclodextrin Polymer toward Aquatic Contaminants: Insights from Ultrahigh-Resolution Mass Spectrometry of Dissolved Organic Matter. Anal Chem 2023; 95:15505-15513. [PMID: 37831967 DOI: 10.1021/acs.analchem.3c01394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2023]
Abstract
Selectivity in solid-phase extraction (SPE) materials has become increasingly important for analyte enrichment in sensitive analytical workflows to alleviate detrimental matrix effects. Molecular-level investigation of matrix constituents, which are preferentially extracted or excluded, can provide the analytical chemist with valuable information to learn about their control on sorbent selectivity. In this work, we employ nontargeted Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS) to elucidate the molecular chemodiversity of freshwater-derived dissolved organic matter (DOM) extracted by the selective model sorbent β-cyclodextrin polymer (β-CDP) in comparison to conventional, universal SPE sorbents (i.e., Oasis HLB, Supel-Select HLB, and LiChrolut EN). Statistical analysis of MS data corroborated the highly selective nature of β-CDP by revealing the extracted DOM spectra that are most dissimilar to original compositions. We found that its selectivity was characterized by pronounced discrimination against highly oxygenated and unsaturated DOM compounds, which were associated with the classes of lignin-like, tannin-like, and carboxylic-rich alicyclic molecules. In contrast, conventional sorbents excluded less highly oxygenated compounds and showed a more universal extraction behavior for a wide range of DOM compositional space. We lay these findings in a larger context that aids the analyst in obtaining an a priori estimate of sorbent selectivity toward any target analyte of interest serving thereby an optimization of sample preparation. This study highlights the great value of nontargeted ultrahigh-resolution MS for better understanding of targeted analytics and provides new insights into the selective sorption behavior of novel sorbents.
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Affiliation(s)
- David Glöckler
- TUM School of Natural Sciences, Chair of Analytical Chemistry and Water Chemistry, Technical University of Munich, Garching 85748 , Germany
| | - Mourad Harir
- Research Unit Analytical BioGeoChemistry, Helmholtz Munich, Neuherberg 85764, Germany
- TUM School of Life Sciences, Chair of Analytical Food Chemistry, Technical University of Munich, Freising 85354, Germany
| | - Philippe Schmitt-Kopplin
- Research Unit Analytical BioGeoChemistry, Helmholtz Munich, Neuherberg 85764, Germany
- TUM School of Life Sciences, Chair of Analytical Food Chemistry, Technical University of Munich, Freising 85354, Germany
| | - Martin Elsner
- TUM School of Natural Sciences, Chair of Analytical Chemistry and Water Chemistry, Technical University of Munich, Garching 85748 , Germany
| | - Rani Bakkour
- TUM School of Natural Sciences, Chair of Analytical Chemistry and Water Chemistry, Technical University of Munich, Garching 85748 , Germany
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6
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Goranov AI, Sleighter RL, Yordanov DA, Hatcher PG. TEnvR: MATLAB-based toolbox for environmental research. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2023; 15:5390-5400. [PMID: 37807701 DOI: 10.1039/d3ay00750b] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/10/2023]
Abstract
With the advancements in science and technology, datasets become larger and more multivariate, which warrants the need for programming tools for fast data processing and multivariate statistical analysis. Here, the MATLAB-based Toolbox for Environmental Research "TEnvR" (pronounced "ten-ver") is introduced. This novel toolbox includes 44 open-source codes for automated data analysis from a multitude of techniques, such as ultraviolet-visible, fluorescence, and nuclear magnetic resonance spectroscopies, as well as from ultrahigh resolution mass spectrometry. Provided are codes for processing data (e.g., spectral corrections, formula assignment), visualization of figures, calculation of metrics, multivariate statistics, and automated work-up of large datasets. TEnvR allows for efficient data analysis with minimal "by-hand" manual work by the user, which allows scientists to do research more efficiently. This manuscript is supplemented with a detailed tutorial, example data, and screenshots, which collectively provide instructions on how to use all codes. TEnvR is novice-friendly and experience in programming with MATLAB is not required. TEnvR fulfills the need for a concise MATLAB-based toolbox for working with environmental data and will be updated annually to keep pace with the latest advances and needs for computational work in the environmental sciences.
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Affiliation(s)
- Aleksandar I Goranov
- Department of Chemistry and Biochemistry, Old Dominion University, 4501 Elkhorn Avenue, Norfolk, VA 23529, USA.
| | - Rachel L Sleighter
- Department of Chemistry and Biochemistry, Old Dominion University, 4501 Elkhorn Avenue, Norfolk, VA 23529, USA.
- FBSciences, Inc. R&D Laboratory, 349 Southport Circle, Suite 102, Virginia Beach, VA 23452, USA
| | | | - Patrick G Hatcher
- Department of Chemistry and Biochemistry, Old Dominion University, 4501 Elkhorn Avenue, Norfolk, VA 23529, USA.
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7
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Lysak DH, Bermel W, Moxley-Paquette V, Michal C, Ghosh-Biswas R, Soong R, Nashman B, Lacerda A, Simpson AJ. Cutting without a Knife: A Slice-Selective 2D 1H- 13C HSQC NMR Sequence for the Analysis of Inhomogeneous Samples. Anal Chem 2023; 95:14392-14401. [PMID: 37713676 DOI: 10.1021/acs.analchem.3c02756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/17/2023]
Abstract
Nuclear magnetic resonance (NMR) is a powerful technique with applications ranging from small molecule structure elucidation to metabolomics studies of living organisms. Typically, solution-state NMR requires a homogeneous liquid, and the whole sample is analyzed as a single entity. While adequate for homogeneous samples, such an approach is limited if the composition varies as would be the case in samples that are naturally heterogeneous or layered. In complex samples such as living organisms, magnetic susceptibility distortions lead to broad 1H line shapes, and thus, the additional spectral dispersion afforded by 2D heteronuclear experiments is often required for metabolite discrimination. Here, a novel, slice-selective 2D, 1H-13C heteronuclear single quantum coherence (HSQC) sequence was developed that exclusively employs shaped pulses such that only spins in the desired volume are perturbed. In turn, this permits multiple volumes in the tube to be studied during a single relaxation delay, increasing sensitivity and throughput. The approach is first demonstrated on standards and then used to isolate specific sample/sensor elements from a microcoil array and finally study slices within a living earthworm, allowing metabolite changes to be discerned with feeding. Overall, slice-selective NMR is demonstrated to have significant potential for the study of layered and other inhomogeneous samples of varying complexity. In particular, its ability to select subelements is an important step toward developing microcoil receive-only arrays to study environmental toxicity in tiny eggs, cells, and neonates, whereas localization in larger living species could help better correlate toxin-induced biochemical responses to the physical localities or organs involved.
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Affiliation(s)
- Daniel H Lysak
- Environmental NMR Center, Department of Physical and Environmental Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, ON M1C 1A4, Canada
| | - Wolfgang Bermel
- Bruker BioSpin GmbH, Rudolf-Plank-Str. 23, 76275 Ettlingen, Germany
| | - Vincent Moxley-Paquette
- Environmental NMR Center, Department of Physical and Environmental Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, ON M1C 1A4, Canada
| | - Carl Michal
- Department of Physics and Astronomy, University of British Columbia, 6224 Agricultural Road, Vancouver, BC V6T 1Z1, Canada
| | - Rajshree Ghosh-Biswas
- Environmental NMR Center, Department of Physical and Environmental Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, ON M1C 1A4, Canada
| | - Ronald Soong
- Environmental NMR Center, Department of Physical and Environmental Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, ON M1C 1A4, Canada
| | - Ben Nashman
- Synex Medical, 2 Bloor Street E, Suite 310, Toronto, ON M4W 1A8,Canada
| | - Andressa Lacerda
- Synex Medical, 2 Bloor Street E, Suite 310, Toronto, ON M4W 1A8,Canada
| | - Andre J Simpson
- Environmental NMR Center, Department of Physical and Environmental Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, ON M1C 1A4, Canada
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8
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Catalá TS, Speidel LG, Wenzel-Storjohann A, Dittmar T, Tasdemir D. Bioactivity profile of dissolved organic matter and its relation to molecular composition. NATURAL PRODUCTS AND BIOPROSPECTING 2023; 13:32. [PMID: 37721596 PMCID: PMC10507005 DOI: 10.1007/s13659-023-00395-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Accepted: 08/30/2023] [Indexed: 09/19/2023]
Abstract
Dissolved organic matter (DOM) occupies a huge and uncharted molecular space. Given its properties, DOM can be presented as a promising biotechnological resource. However, research into bioactivities of DOM is still in early stages. In this study, the biotechnological potential of terrestrial and marine DOM, its molecular composition and their relationships are investigated. Samples were screened for their in vitro antibacterial, antifungal, anticancer and antioxidant activities. Antibacterial activity was detected against Staphylococcus aureus in almost all DOM samples, with freshwater DOM showing the lowest IC50 values. Most samples also inhibited Staphylococcus epidermidis, and four DOM extracts showed up to fourfold higher potency than the reference drug. Antifungal activity was limited to only porewater DOM towards human dermatophyte Trichophyton rubrum. No significant in vitro anticancer activity was observed. Low antioxidant potential was exerted. The molecular characterization by FT-ICR MS allowed a broad compositional overview. Three main distinguished groups have been identified by PCoA analyses. Antibacterial activities are related to high aromaticity content and highly-unsaturated molecular formulae (O-poor). Antifungal effect is correlated with highly-unsaturated molecular formulae (O-rich). Antioxidant activity is positively related to the presence of double bonds and polyphenols. This study evidenced for the first time antibacterial and antifungal activity in DOM with potential applications in cosmeceutical, pharmaceutical and aquaculture industry. The lack of cytotoxicity and the almost unlimited presence of this organic material may open new avenues in future marine bioprospecting efforts.
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Affiliation(s)
- Teresa S Catalá
- Global Society Institute, Wälderhaus, Hamburg, Germany.
- Organization for Science, Education and Global Society gGmbH, Stuttgart, Germany.
- ICBM-MPI Bridging Group for Marine Geochemistry, Institute for Chemistry and Biology of the Marine Environment (ICBM), University of Oldenburg, Oldenburg, Germany.
| | - Linn G Speidel
- ICBM-MPI Bridging Group for Marine Geochemistry, Institute for Chemistry and Biology of the Marine Environment (ICBM), University of Oldenburg, Oldenburg, Germany
- Geological Institute, Department of Earth Sciences, ETH Zurich, 8092, Zurich, Switzerland
| | - Arlette Wenzel-Storjohann
- GEOMAR Centre for Marine Biotechnology, Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Am Kiel-Kanal 44, 24106, Kiel, Germany
| | - Thorsten Dittmar
- ICBM-MPI Bridging Group for Marine Geochemistry, Institute for Chemistry and Biology of the Marine Environment (ICBM), University of Oldenburg, Oldenburg, Germany
- Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg, Oldenburg, Germany
| | - Deniz Tasdemir
- GEOMAR Centre for Marine Biotechnology, Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Am Kiel-Kanal 44, 24106, Kiel, Germany
- Kiel University, Christian-Albrechts-Platz 4, 24118, Kiel, Germany
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9
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Zhang Q, Lv J, He A, Cao D, He X, Zhao L, Wang Y, Jiang G. Investigation with ESI FT-ICR MS on sorbent selectivity and comprehensive molecular composition of landfill leachate dissolved organic matter. WATER RESEARCH 2023; 243:120359. [PMID: 37499543 DOI: 10.1016/j.watres.2023.120359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Revised: 07/10/2023] [Accepted: 07/14/2023] [Indexed: 07/29/2023]
Abstract
Molecular characterization of landfill leachate dissolved organic matter (LDOM) is essential for developing effective processing techniques. However, the molecular selectivity of extraction method and ionization modes often leads to the bias of molecular characterization of LDOM. Here, seven representative sorbents were selected and electrospray ionization negative ion mode (ESI (-)) and positive ion mode (ESI (+)) Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS) were used to investigate the molecular composition of different LDOM samples. Obvious sorbent selectivity during extraction procedure was observed, resulting in the underestimation of molecular diversity of LDOM from 32.7% to 69.3%. Totally, 14,000-18,000 unique molecules were obtained in a single sample, indicating the unprecedented molecular diversity of LDOM. Lignins, proteins and lipids are three major molecular groups in LDOM, and N or S containing molecules occupied 83%. Although much of total organic carbon was removed during biochemical treatment process, the molecular diversity of LDOM was not reduced because a considerable of bio-recalcitrant molecules was produced. The results uncover the sorbents selectivity and ionization modes selectivity in LDOM analysis and provided a comprehensive change of LDOM molecular composition during biochemical treatment, which benefits the development of accurate methods to remove organic carbon in landfill leachate.
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Affiliation(s)
- Qiurui Zhang
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jitao Lv
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Anen He
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Dong Cao
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiaosong He
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; State Environmental Protection Key laboratory of Simulation and Control of Groundwater Pollution, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Lixia Zhao
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China; School of Environment, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou 310024, China
| | - Yawei Wang
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China; School of Environment, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou 310024, China
| | - Guibin Jiang
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
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10
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Zykova MV, Volikov AB, Buyko EE, Bratishko KA, Ivanov VV, Konstantinov AI, Logvinova LA, Mihalyov DA, Sobolev NA, Zhirkova AM, Maksimov SV, Perminova IV, Belousov MV. Enhanced Antioxidant Activity and Reduced Cytotoxicity of Silver Nanoparticles Stabilized by Different Humic Materials. Polymers (Basel) 2023; 15:3386. [PMID: 37631443 PMCID: PMC10457742 DOI: 10.3390/polym15163386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 08/09/2023] [Accepted: 08/10/2023] [Indexed: 08/27/2023] Open
Abstract
The current article describes the biological activity of new biomaterials combining the "green" properties of humic substances (HSs) and silver nanoparticles. The aim is to investigate the antioxidant activity (AOA) of HS matrices (macroligands) and AgNPs stabilized with humic macroligands (HS-AgNPs). The unique chemical feature of HSs makes them very promising ligands (matrices) for AgNP stabilization. HSs have previously been shown to exert many pharmacological effects mediated by their AOA. AgNPs stabilized with HS showed a pronounced ability to bind to reactive oxygen species (ROS) in the test with ABTS. Also, higher AOA was observed for HS-AgNPs as compared to the HS matrices. In vitro cytotoxicity studies have shown that the stabilization of AgNPs with the HS matrices reduces the cytotoxicity of AgNPs. As a result of in vitro experiments with the use of 2,7-dichlorodihydrofluorescein diacetate (DCFDA), it was found that all HS materials tested and the HS-AgNPs did not exhibit prooxidant effects. Moreover, more pronounced AOA was shown for HS-AgNP samples as compared to the original HS matrices. Two putative mechanisms of the pronounced AOA of the tested compositions are proposed: firstly, the pronounced ability of HSs to inactivate ROS and, secondly, the large surface area and surface-to-volume ratio of HS-AgNPs, which facilitate electron transfer and mitigate kinetic barriers to the reduction reaction. As a result, the antioxidant properties of the tested HS-AgNPs might be of particular interest for biomedical applications aimed at inhibiting the growth of bacteria and viruses and the healing of purulent wounds.
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Affiliation(s)
- Maria V. Zykova
- Pharmaceutical Faculty, Siberian State Medical University, 634050 Tomsk, Russia; (E.E.B.); (K.A.B.); (V.V.I.); (L.A.L.); (D.A.M.); (M.V.B.)
| | - Alexander B. Volikov
- Department of Chemistry, Lomonosov Moscow State University, Leninskiye Gory 1-3, 119991 Moscow, Russia; (A.B.V.); (A.I.K.); (N.A.S.); (A.M.Z.); (S.V.M.); (I.V.P.)
| | - Evgeny E. Buyko
- Pharmaceutical Faculty, Siberian State Medical University, 634050 Tomsk, Russia; (E.E.B.); (K.A.B.); (V.V.I.); (L.A.L.); (D.A.M.); (M.V.B.)
| | - Kristina A. Bratishko
- Pharmaceutical Faculty, Siberian State Medical University, 634050 Tomsk, Russia; (E.E.B.); (K.A.B.); (V.V.I.); (L.A.L.); (D.A.M.); (M.V.B.)
| | - Vladimir V. Ivanov
- Pharmaceutical Faculty, Siberian State Medical University, 634050 Tomsk, Russia; (E.E.B.); (K.A.B.); (V.V.I.); (L.A.L.); (D.A.M.); (M.V.B.)
| | - Andrey I. Konstantinov
- Department of Chemistry, Lomonosov Moscow State University, Leninskiye Gory 1-3, 119991 Moscow, Russia; (A.B.V.); (A.I.K.); (N.A.S.); (A.M.Z.); (S.V.M.); (I.V.P.)
| | - Lyudmila A. Logvinova
- Pharmaceutical Faculty, Siberian State Medical University, 634050 Tomsk, Russia; (E.E.B.); (K.A.B.); (V.V.I.); (L.A.L.); (D.A.M.); (M.V.B.)
| | - Dmitrii A. Mihalyov
- Pharmaceutical Faculty, Siberian State Medical University, 634050 Tomsk, Russia; (E.E.B.); (K.A.B.); (V.V.I.); (L.A.L.); (D.A.M.); (M.V.B.)
| | - Nikita A. Sobolev
- Department of Chemistry, Lomonosov Moscow State University, Leninskiye Gory 1-3, 119991 Moscow, Russia; (A.B.V.); (A.I.K.); (N.A.S.); (A.M.Z.); (S.V.M.); (I.V.P.)
| | - Anastasia M. Zhirkova
- Department of Chemistry, Lomonosov Moscow State University, Leninskiye Gory 1-3, 119991 Moscow, Russia; (A.B.V.); (A.I.K.); (N.A.S.); (A.M.Z.); (S.V.M.); (I.V.P.)
| | - Sergey V. Maksimov
- Department of Chemistry, Lomonosov Moscow State University, Leninskiye Gory 1-3, 119991 Moscow, Russia; (A.B.V.); (A.I.K.); (N.A.S.); (A.M.Z.); (S.V.M.); (I.V.P.)
| | - Irina V. Perminova
- Department of Chemistry, Lomonosov Moscow State University, Leninskiye Gory 1-3, 119991 Moscow, Russia; (A.B.V.); (A.I.K.); (N.A.S.); (A.M.Z.); (S.V.M.); (I.V.P.)
| | - Mikhail V. Belousov
- Pharmaceutical Faculty, Siberian State Medical University, 634050 Tomsk, Russia; (E.E.B.); (K.A.B.); (V.V.I.); (L.A.L.); (D.A.M.); (M.V.B.)
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11
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MA C, NI H, QI Y. [Chemical diversity of dissolved organic matter revealed by ultra performance liquid chromatography-Fourier transform ion cyclotron resonance mass spectrometry]. Se Pu 2023; 41:662-672. [PMID: 37534553 PMCID: PMC10398822 DOI: 10.3724/sp.j.1123.2023.03012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2023] [Indexed: 08/04/2023] Open
Abstract
Dissolved organic matter (DOM) is a highly complex and heterogeneous mixture that exists in various environments, including rivers, oceans, soils, and atmospheric aerosols. DOM plays a crucial role in biogeochemical cycles and significantly influences the environment by regulating water quality, changing the climate, and transporting pollutants. Therefore, clarifying the detailed molecular composition of DOM is essential to obtain a better understanding of its physical and chemical properties, thereby enabling further elucidation of its biogeochemical behavior. In this study, Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) combined with quadrupole detection (QPD) was used to conduct the online ultra performance liquid chromatography (UPLC)-MS analysis of DOM in water, aerosol, and soil samples collected in Tianjin, China. The samples were extracted with pure water and filtered through a glass fiber membrane (0.45 μm). The DOM in the samples was then enriched by solid-phase extraction (SPE) and redissolved in water-acetonitrile (1∶1, v/v) at mass concentration of 200 mg/L for the LC-MS experiments. The mobile phases used for UPLC were water containing 0.1% (v/v) formic acid (A) and acetonitrile containing 0.1% (v/v) formic acid (B). The gradient elution procedure was as follows: 0-5 min, 0B; 5-11 min, 0B-95%B; 11-25 min, 95%B; 25-28 min, 95%B-0B; 28-30 min, 0B. The flow rate was 0.1 mL/min, and the injection volume was 10 μL. The UV wavelength was set at 274 nm. MS detection was performed in negative electrospray ionization (ESI(-)) mode with a capillary voltage of 5.0 kV, and the MS data were collected in broadband (m/z 150-1000) and QPD modes. The transient data size was set to 2M, the free induction decay signal length was 0.74 s, and the ion accumulation time was 0.030 s. Four chromatographic peaks were observed in the chromatograms. The first peak was identified as salt adduct compounds containing sodium formate. The three other peaks contained complex components, such as oxygen-rich, unsaturated tannin-like compounds, as well as low-oxygen, highly saturated lignin-like and protein/amino-like compounds. UPLC-FT-ICR MS was suitable for assigning the detailed elemental compositions of the DOM samples. UPLC effectively improved the ionization efficiency of difficult-to-ionize compounds and enhanced the detection accuracy of MS. Indeed, MS peaks with a mass difference of as small as 3.4 mDa were well identified. A total of 12027, 15593, and 8029 peaks in the mass spectra of the water, aerosol, and soil samples, respectively, were assigned to known elemental formulae. Peaks Ⅱ and Ⅲ were hydrophilic components mainly including CHNO and CHO compounds. Compared with peak Ⅱ, peak Ⅲ exhibited a significant increase in CHNOS and CHOS, indicating that UPLC exerted a certain separation effect on these compounds. Furthermore, the aerosol samples contained a higher concentration of sulfur-containing compounds than the water and soil samples, primarily because of the abundance of organic sulfates present in atmospheric and cloud water. Data processing and graphic visualization revealed that the unique components in the water samples mainly appeared in the area of 0.1
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12
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Volikov A, Rukhovich G, Perminova IV. NOMspectra: An Open-Source Python Package for Processing High Resolution Mass Spectrometry Data on Natural Organic Matter. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2023. [PMID: 37314949 DOI: 10.1021/jasms.3c00003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
The present study introduces NOMspectra, a Python package for processing high resolution mass spectrometry data on complex systems of natural organic matter (NOM). NOM is characterized by multicomponent composition reflected as thousands of signals producing very complex patterns in high resolution mass spectra. This complexity sets special demands on the methods of data processing used for analysis. The developed NOMspectra package offers a comprehensive workflow for processing, analyzing, and visualizing information-rich mass spectra of NOM and HS including algorithms for filtering spectra, recalibrating, and assigning elemental compositions to molecular ions. Additionally, the package includes functions for calculating various molecular descriptors and methods for data visualization. A graphical user interface (GUI) has been developed to make a user-friendly interface for the proposed package.
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Affiliation(s)
- Alexander Volikov
- Department of Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia
| | - Gleb Rukhovich
- Department of Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia
| | - Irina V Perminova
- Department of Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia
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13
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Liu W, Xie X, Wang Y. Novel insight into arsenic enrichment in aquifer sediments under different paleotemperatures from a molecular-level characterization of sedimentary organic matter. JOURNAL OF HAZARDOUS MATERIALS 2023; 451:131115. [PMID: 36871468 DOI: 10.1016/j.jhazmat.2023.131115] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Revised: 01/30/2023] [Accepted: 02/27/2023] [Indexed: 06/18/2023]
Abstract
The heterogeneous distribution of As in sediments is governed by the abundance and type of SOM, which is closely associated with the depositional environment. However, few studies have revealed the effect of depositional environment (e.g., paleotemperature) on As sequestration and transport in sediments from the perspective of the molecular characteristics of sedimentary organic matter (SOM). In this study, we characterized the optical and molecular characteristics of SOM coupled with organic geochemical signatures to illustrate in detail the mechanisms of sedimentary As burial under different paleotemperatures. We identified that alternating paleotemperature changes result in the fluctuation of H-rich and H-poor organic matter in sediments. Further, we found aliphatic and saturated compounds with higher nominal oxidation state of carbon (NOSC) values predominate under high-paleotemperature (HT) conditions, while polycyclic aromatics and polyphenols with lower NOSC values accumulate under low-paleotemperature (LT) conditions. Under LT conditions, thermodynamically favorable organic compounds (higher NOSC values) are preferentially degraded by microorganisms to provide sufficient energy to sustain sulfate reduction, favoring sedimentary As sequestration. Under HT conditions, the energy gained from the decomposition of low NOSC value organic compounds approaches the energy required to sustain dissimilatory Fe reduction, leading to sedimentary As release into groundwater. This study provides molecular-scale evidence of SOM that indicates LT depositional environments favor sedimentary As burial and accumulation.
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Affiliation(s)
- Wenjing Liu
- School of Environmental Studies & State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, 430074 Wuhan, China; State Environmental Protection Key Laboratory of Source Apportionment and Control of Aquatic Pollution, Ministry of Ecology and Environment, 430074 Wuhan, China
| | - Xianjun Xie
- School of Environmental Studies & State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, 430074 Wuhan, China; State Environmental Protection Key Laboratory of Source Apportionment and Control of Aquatic Pollution, Ministry of Ecology and Environment, 430074 Wuhan, China.
| | - Yanxin Wang
- School of Environmental Studies & State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, 430074 Wuhan, China; State Environmental Protection Key Laboratory of Source Apportionment and Control of Aquatic Pollution, Ministry of Ecology and Environment, 430074 Wuhan, China
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14
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Hu T, Luo M, Qi Y, He D, Chen L, Xu Y, Chen D. Molecular evidence for the production of labile, sulfur-bearing dissolved organic matter in the seep sediments of the South China Sea. WATER RESEARCH 2023; 233:119732. [PMID: 36801578 DOI: 10.1016/j.watres.2023.119732] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Revised: 02/05/2023] [Accepted: 02/11/2023] [Indexed: 06/18/2023]
Abstract
Cold seeps with methane-rich fluids leaking out of the seafloor usually support massive biomass of chemosynthetic organisms and associated fauna. A substantial amount of methane is converted to dissolved inorganic carbon by microbial metabolism, and this process also releases dissolved organic matter (DOM) into pore water. Here, pore water samples from "Haima cold seeps" sediments and the non-seep reference sediments in the northern South China Sea were analyzed for optical properties and molecular compositions of pore water DOM. Our results showed that the relative abundance of protein-like DOM, H/Cwa and molecular lability boundary percentage (MLBL%) in the seep sediments were significantly higher than those in the reference sediments, indicating that more labile DOM related to unsaturated aliphatic compounds is produced in the seep sediments. Spearman's correlation of the fluoresce and molecular data suggested that the humic-like components (C1 and C2) mainly constituted the refractory compounds (CRAM, highly unsaturated and aromatics compounds). In contrast, the protein-like component (C3) had high H/C ratios featuring high degree of DOM lability. The amount of S-containing formulas (CHOS and CHONS) was greatly elevated in the seep sediments, likely caused by abiotic and biotic sulfurization of DOM in the sulfidic environment. Although the abiotic sulfurization was proposed to have a stabilizing effect on organic matter, our results implied that the biotic sulfurization in the cold seep sediments would increase DOM lability. Overall, the labile DOM accumulated in the seep sediments is closely linked to methane oxidation, which not only support heterotrophic communities and but also likely have an impact on carbon and sulfur cycling in the sediments and the ocean.
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Affiliation(s)
- Tingcang Hu
- College of Geography and Environment, Liaocheng University, Liaocheng, China
| | - Min Luo
- Laboratory for Marine Geology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China; Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai, China.
| | - Yulin Qi
- Institute of Surface-Earth System Science, College of Earth System Science, Tianjin University, Tianjin, China
| | - Ding He
- Department of Ocean Science and Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), The Hong Kong University of Science and Technology, Hong Kong, China
| | - Linying Chen
- Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai, China
| | - Yunping Xu
- Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai, China
| | - Duofu Chen
- Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai, China.
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15
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Felgate SL, Craig AJ, Moodie LWK, Hawkes J. Characterization of a Newly Available Coastal Marine Dissolved Organic Matter Reference Material (TRM-0522). Anal Chem 2023; 95:6559-6567. [PMID: 37052954 PMCID: PMC10134136 DOI: 10.1021/acs.analchem.2c05304] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/14/2023]
Abstract
Recent methodological advances have greatly increased our ability to characterize aquatic dissolved organic matter (DOM) using high-resolution instrumentation, including nuclear magnetic resonance (NMR) and mass spectrometry (HRMS). Reliable DOM reference materials are required for further method development and data set alignment but do not currently exist for the marine environment. This presents a major limitation for marine biogeochemistry and related fields, including natural product discovery. To fill this resource gap, we have prepared a coastal marine DOM reference material (TRM-0522) from 45 m deep seawater obtained ∼1 km offshore of Sweden's west coast. Over 3000 molecular formulas were assigned by direct infusion HRMS, confirming sample diversity, and the distribution of formulas in van Krevelen space was typical for a marine sample, with the majority of formulas in the region H/C 1-1.5 and O/C 0.3-0.7. The extracted DOM pool was more nitrogen (N)- and sulfur (S)-rich than a typical terrestrial reference material (SRFA). MZmine3 processing of ultrahigh-performance liquid chromatography (UPLC)-HRMS/MS data revealed 494 resolvable features (233 in negative mode; 261 in positive mode) over a wide range of retention times and masses. NMR data indicated low contributions from aromatic protons and, generally speaking, low lignin, humic, and fulvic substances associated with terrestrial samples. Instead, carboxylic-rich aliphatic molecules were the most abundant components, followed by carbohydrates and aliphatic functionalities. This is consistent with a very low specific UV absorbance SUVA254 value of 1.52 L mg C-1 m-1. When combined with comparisons with existing terrestrial reference materials (Suwannee River fulvic acid and Pony Lake fulvic acid), these results suggest that TRM-0522 is a useful and otherwise unavailable reference material for use in marine DOM biogeochemistry.
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Affiliation(s)
- Stacey L Felgate
- Analytical Chemistry, Department of Chemistry BMC, Uppsala University, Uppsala 752 37, Sweden
| | - Alexander J Craig
- Analytical Chemistry, Department of Chemistry BMC, Uppsala University, Uppsala 752 37, Sweden
- Drug Design and Discovery, Department of Medicinal Chemistry, Uppsala University, Uppsala 752 37, Sweden
| | - Lindon W K Moodie
- Drug Design and Discovery, Department of Medicinal Chemistry, Uppsala University, Uppsala 752 37, Sweden
| | - Jeffrey Hawkes
- Analytical Chemistry, Department of Chemistry BMC, Uppsala University, Uppsala 752 37, Sweden
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16
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Maroli AS, Powers R. Closing the gap between in vivo and in vitro omics: using QA/QC to strengthen ex vivo NMR metabolomics. NMR IN BIOMEDICINE 2023; 36:e4594. [PMID: 34369014 PMCID: PMC8821733 DOI: 10.1002/nbm.4594] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Revised: 06/21/2021] [Accepted: 07/09/2021] [Indexed: 05/08/2023]
Abstract
Metabolomics aims to achieve a global quantitation of the pool of metabolites within a biological system. Importantly, metabolite concentrations serve as a sensitive marker of both genomic and phenotypic changes in response to both internal and external stimuli. NMR spectroscopy greatly aids in the understanding of both in vitro and in vivo physiological systems and in the identification of diagnostic and therapeutic biomarkers. Accordingly, NMR is widely utilized in metabolomics and fluxomics studies due to its limited requirements for sample preparation and chromatography, its non-destructive and quantitative nature, its utility in the structural elucidation of unknown compounds, and, importantly, its versatility in the analysis of in vitro, in vivo, and ex vivo samples. This review provides an overview of the strengths and limitations of in vitro and in vivo experiments for translational research and discusses how ex vivo studies may overcome these weaknesses to facilitate the extrapolation of in vitro insights to an in vivo system. The application of NMR-based metabolomics to ex vivo samples, tissues, and biofluids can provide essential information that is close to a living system (in vivo) with sensitivity and resolution comparable to those of in vitro studies. The success of this extrapolation process is critically dependent on high-quality and reproducible data. Thus, the incorporation of robust quality assurance and quality control checks into the experimental design and execution of NMR-based metabolomics experiments will ensure the successful extrapolation of ex vivo studies to benefit translational medicine.
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Affiliation(s)
- Amith Sadananda Maroli
- Nebraska Center for Integrated Biomolecular Communication, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
- Department of Chemistry, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
| | - Robert Powers
- Nebraska Center for Integrated Biomolecular Communication, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
- Department of Chemistry, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
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17
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Liu Y, Liu X, Long Y, Wen Y, Ma C, Sun J. Variations in dissolved organic matter chemistry on a vertical scale in the eastern Indian Ocean. WATER RESEARCH 2023; 232:119674. [PMID: 36738557 DOI: 10.1016/j.watres.2023.119674] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2022] [Revised: 01/16/2023] [Accepted: 01/26/2023] [Indexed: 06/18/2023]
Abstract
Oceans cover approximately 71% of the Earth's surface area, which is why some people refer to the Earth as a large water sphere. Marine dissolved organic matter (DOM) constitutes the main carbon pool for biogeochemical cycles and plays an important role in global carbon dynamics. Here, the molecular composition and component characteristics of surface (5 m), deep chlorophyll maximum (DCM), and deep (2000 m) layer DOM in the eastern Indian Ocean (EIO) were investigated using Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) and three-dimensional fluorescence spectroscopy. Thousands of individual DOM formulas (approximately 3716-6986 formulas) were detected at 100-700 Da, showing a Gaussian distribution. The elements carbon (C), hydrogen (H), oxygen (O), nitrogen (N) and sulfur (S) were detected and constituted four formula classes in solid-phase extracted marine DOM samples. Furthermore, the order of the percent intensity of the formulas was CHO > CHNO > CHOS > CHNOS. Carboxylic-rich alicyclic molecule (CRAM) compounds, as part of recalcitrant DOM (RDOM), were detected at 61.32%-78.77% (by intensity). In addition, the concept of islands of stability (IOS, approximately 3.99%-11.22%) has been proposed in this study, representing the most stable components in the marine environment. Such molecular formulas as described above probably contribute to increased RDOM content in the EIO and potentially reflect enhanced accumulation or sequestration of RDOM in the deep layer. The variation in the spectroscopic indices (FI, β/α, BIX, and HIX) and fluorescent components (C1 to C4) with depth indicates a shift from protein-like to humic-like components, leading to gradual aging of the water column. In brief, this study relies on data from marine DOM in the EIO to provide a molecular and chemical background for global models of marine DOM production, transformation and sequestration.
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Affiliation(s)
- Yang Liu
- Institute for Advance Marine Research, China University of Geosciences, Guangzhou 511462, China; State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China; Institute of Marine Science and Technology, Shandong University, Qingdao 266237, China
| | - Xiaofang Liu
- Institute for Advance Marine Research, China University of Geosciences, Guangzhou 511462, China; State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China
| | - Yi Long
- Institute for Advance Marine Research, China University of Geosciences, Guangzhou 511462, China; State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China
| | - Yujian Wen
- Research Centre for Indian Ocean Ecosystem, Tianjin University of Science and Technology, Tianjin 300457, China
| | - Chao Ma
- Institute of Surface-Earth System Science, School of Earth System Science, Tianjin University, Tianjin 300072, China
| | - Jun Sun
- Institute for Advance Marine Research, China University of Geosciences, Guangzhou 511462, China; State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China; Research Centre for Indian Ocean Ecosystem, Tianjin University of Science and Technology, Tianjin 300457, China.
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18
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Zhou Z, Fu QL, Fujii M, Waite TD. Complementary Elucidation of the Molecular Characteristics of Groundwater Dissolved Organic Matter Using Ultrahigh-Resolution Mass Spectrometry Coupled with Negative- and Positive-Ion Electrospray Ionization. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:4690-4700. [PMID: 36905367 DOI: 10.1021/acs.est.2c08816] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
The formula assignment of the Fourier transform ion cyclotron resonance mass spectrometry coupled with positive-ion electrospray ionization [ESI(+)-FT-ICR MS] is challenging because of the extensive occurrence of adducts. However, there is a paucity of automated formula assignment methods for ESI(+)-FT-ICR MS spectra. The novel automated formula assignment algorithm for ESI(+)-FT-ICR MS spectra developed herein has been applied to elucidate the composition of dissolved organic matter (DOM) in groundwater during air-induced ferrous [Fe(II)] oxidation. The ESI(+)-FT-ICR MS spectra of groundwater DOM were profoundly impacted by [M + Na]+ adducts and, to a lesser extent, [M + K]+ adducts. Oxygen-poor and N-containing compounds were frequently detected when the FT-ICR MS was operated in the ESI(+) mode, while the components with higher carbon oxidation states were preferentially ionized in the negative-ion electrospray ionization [ESI(-)] mode. Values for the difference between double-bond equivalents and the number of oxygen atoms from -13 to 13 are proposed for the formula assignment of the ESI(+)-FT-ICR MS spectra of aquatic DOM. Furthermore, for the first time, the Fe(II)-mediated formation of highly toxic organic iodine species was reported in groundwater rich in Fe(II), iodide, and DOM. The results of this study not only shed light on the further algorithm development for comprehensive characterization of DOM by ESI(-)-FT-ICR MS and ESI(+)-FT-ICR MS but also highlight the importance of appropriate treatment of specific groundwater prior to use.
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Affiliation(s)
- Ziqi Zhou
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
- UNSW Water Research Centre, School of Civil and Environmental Engineering, The University of New South Wales, Sydney, New South Wales 2052, Australia
| | - Qing-Long Fu
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
| | - Manabu Fujii
- Department of Civil and Environmental Engineering, Tokyo Institute of Technology, 2-12-1, Ookayama, Meguro-Ku, Tokyo 152-8550, Japan
| | - T David Waite
- UNSW Water Research Centre, School of Civil and Environmental Engineering, The University of New South Wales, Sydney, New South Wales 2052, Australia
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19
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Li S, Harir M, Schmitt-Kopplin P, Gonsior M, Enrich-Prast A, Bastviken D, Valle J, Machado-Silva F, Hertkorn N. Comprehensive assessment of dissolved organic matter processing in the Amazon River and its major tributaries revealed by positive and negative electrospray mass spectrometry and NMR spectroscopy. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 857:159620. [PMID: 36280052 DOI: 10.1016/j.scitotenv.2022.159620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Revised: 09/15/2022] [Accepted: 10/17/2022] [Indexed: 06/16/2023]
Abstract
Rivers are natural biogeochemical systems shaping the fates of dissolved organic matter (DOM) from leaving soils to reaching the oceans. This study focuses on Amazon basin DOM processing employing negative and positive electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI[±] FT-ICR MS) and nuclear magnetic resonance spectroscopy (NMR) to reveal effects of major processes on the compositional space and structural characteristics of black, white and clear water systems. These include non-conservative mixing at the confluences of (1) Solimões and the Negro River, (2) the Amazon River and the Madeira River, and (3) in-stream processing of Amazon River DOM between the Madeira River and the Tapajós River. The Negro River (black water) supplies more highly oxygenated and high molecular weight compounds, whereas the Solimões and Madeira Rivers (white water) contribute more CHNO and CHOS molecules to the Amazon River main stem. Aliphatic CHO and abundant CHNO compounds prevail in Tapajos River DOM (clear water), likely originating from primary production. Sorption onto particles and heterotrophic microbial degradation are probably the principal mechanisms for the observed changes in DOM composition in the Amazon River and its tributaries.
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Affiliation(s)
- Siyu Li
- Research Unit Analytical Biogeochemistry, Helmholtz Munich, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany
| | - Mourad Harir
- Research Unit Analytical Biogeochemistry, Helmholtz Munich, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany; Chair of Analytical Food Chemistry, Technische Universität Muenchen, Alte Akademie 10, 85354 Freising-Weihenstephan, Germany
| | - Philippe Schmitt-Kopplin
- Research Unit Analytical Biogeochemistry, Helmholtz Munich, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany; Chair of Analytical Food Chemistry, Technische Universität Muenchen, Alte Akademie 10, 85354 Freising-Weihenstephan, Germany
| | - Michael Gonsior
- University of Maryland Center for Environmental Science, Chesapeake Biological Laboratory, 146 Williams Street, Solomons, MD 20688, United States
| | - Alex Enrich-Prast
- Department of Thematic Studies - Environmental Change, Linköping University, SE-581 83 Linköping, Sweden; Institute of Marine Science, Federal University of São Paolo, Santos, Brazil
| | - David Bastviken
- Department of Thematic Studies - Environmental Change, Linköping University, SE-581 83 Linköping, Sweden
| | - Juliana Valle
- Research Unit Analytical Biogeochemistry, Helmholtz Munich, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany
| | - Fausto Machado-Silva
- Program in Geosciences - Environmental Geochemistry, Chemistry Institute, Fluminense Federal University, 24020-141 Niteroi, Brazil; Department of Environmental Sciences, University of Toledo, Toledo, OH 43606, USA
| | - Norbert Hertkorn
- Research Unit Analytical Biogeochemistry, Helmholtz Munich, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany.
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20
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Luo M, Wang Z, Zhang C, Song B, Li D, Cao P, Peng X, Liu S. Advanced oxidation processes and selection of industrial water source: A new sight from natural organic matter. CHEMOSPHERE 2022; 303:135183. [PMID: 35654233 DOI: 10.1016/j.chemosphere.2022.135183] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 04/25/2022] [Accepted: 05/28/2022] [Indexed: 06/15/2023]
Abstract
Natural organic matter (NOM) refers to the dissolved organic matter in natural water that can pass through 0.45 μm filter membrane. As a pivotal role in the surface water body, it has a significant effect on the efficiency of AOPs. In this study, Excitation emission matrix - parallel factor (EEM-PARAFAC) analysis is used to elucidate the changes of NOM fluorescence peaks after electrochemical oxidation process, two-dimensional correlation spectroscopy (2D-FTIR-COS) and Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) are utilized to clarify the molecular characteristics of NOM in surface water and the effects of electrochemical oxidation on NOM molecules. The results indicate that parts of NOM molecules are mineralized into simple compounds and precursors of refractory organic matters produced by some NOM molecules after AOPs. It is concluded that the precursors of these refractory organic matters may belong to terrestrial humus (C2). Therefore, for the purpose of avoiding more refractory organic pollutants produced by NOM which can reduce the performance of AOPs in the water treatment process, factories should choose water sources with less humus as industrial water supply, or degrade humus by physical or chemical methods before industrial water supply.
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Affiliation(s)
- Mengqiao Luo
- College of Earth and Environmental Sciences, Key Lab of Environmental Pollution Predict & Control, Lanzhou University, Lanzhou, 730000, PR China
| | - Zhaoyang Wang
- College of Earth and Environmental Sciences, Key Lab of Environmental Pollution Predict & Control, Lanzhou University, Lanzhou, 730000, PR China.
| | - Can Zhang
- College of Earth and Environmental Sciences, Key Lab of Environmental Pollution Predict & Control, Lanzhou University, Lanzhou, 730000, PR China
| | - Bo Song
- College of Water Conservancy and Architecture Engineering, Shihezi University, Shihezi, 832000, Xinjiang, PR China
| | - Demin Li
- College of Earth and Environmental Sciences, Key Lab of Environmental Pollution Predict & Control, Lanzhou University, Lanzhou, 730000, PR China
| | - Pengwei Cao
- College of Earth and Environmental Sciences, Key Lab of Environmental Pollution Predict & Control, Lanzhou University, Lanzhou, 730000, PR China
| | - Xiaoqing Peng
- Observation and Research Station on Eco-Environment of Frozen Ground in the Qilian Mountains, Lanzhou University, Lanzhou, 730000, PR China
| | - Shenglin Liu
- Xinjiang Shuchuang Environmental Protection Technology Co., Ltd, Alaer, 843399, Xinjiang, PR China
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21
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Simon C, Dührkop K, Petras D, Roth VN, Böcker S, Dorrestein PC, Gleixner G. Mass Difference Matching Unfolds Hidden Molecular Structures of Dissolved Organic Matter. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:11027-11040. [PMID: 35834352 PMCID: PMC9352317 DOI: 10.1021/acs.est.2c01332] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2022] [Revised: 06/20/2022] [Accepted: 06/30/2022] [Indexed: 05/30/2023]
Abstract
Ultrahigh-resolution Fourier transform mass spectrometry (FTMS) has revealed unprecedented details of natural complex mixtures such as dissolved organic matter (DOM) on a molecular formula level, but we lack approaches to access the underlying structural complexity. We here explore the hypothesis that every DOM precursor ion is potentially linked with all emerging product ions in FTMS2 experiments. The resulting mass difference (Δm) matrix is deconvoluted to isolate individual precursor ion Δm profiles and matched with structural information, which was derived from 42 Δm features from 14 in-house reference compounds and a global set of 11 477 Δm features with assigned structure specificities, using a dataset of ∼18 000 unique structures. We show that Δm matching is highly sensitive in predicting potential precursor ion identities in terms of molecular and structural composition. Additionally, the approach identified unresolved precursor ions and missing elements in molecular formula annotation (P, Cl, F). Our study provides first results on how Δm matching refines structural annotations in van Krevelen space but simultaneously demonstrates the wide overlap between potential structural classes. We show that this effect is likely driven by chemodiversity and offers an explanation for the observed ubiquitous presence of molecules in the center of the van Krevelen space. Our promising first results suggest that Δm matching can both unfold the structural information encrypted in DOM and assess the quality of FTMS-derived molecular formulas of complex mixtures in general.
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Affiliation(s)
- Carsten Simon
- Molecular
Biogeochemistry, Department of Biogeochemical Processes, Max Planck Institute for Biogeochemistry, Hans-Knöll-Straße 10, 07745 Jena, Germany
| | - Kai Dührkop
- Chair
for Bioinformatics, Faculty of Mathematics and Computer Science, Friedrich Schiller University Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany
| | - Daniel Petras
- Collaborative
Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and
Pharmaceutical Sciences, University of California
San Diego, 9500 Gilman Drive, MC 0657, La Jolla, California 92093-0657, United States of America
- CMFI
Cluster of Excellence, Interfaculty Institute of Microbiology and
Medicine, University of Tübingen, Auf der Morgenstelle 24, 72076 Tübingen, Germany
| | - Vanessa-Nina Roth
- Molecular
Biogeochemistry, Department of Biogeochemical Processes, Max Planck Institute for Biogeochemistry, Hans-Knöll-Straße 10, 07745 Jena, Germany
| | - Sebastian Böcker
- Chair
for Bioinformatics, Faculty of Mathematics and Computer Science, Friedrich Schiller University Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany
| | - Pieter C. Dorrestein
- Collaborative
Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and
Pharmaceutical Sciences, University of California
San Diego, 9500 Gilman Drive, MC 0657, La Jolla, California 92093-0657, United States of America
| | - Gerd Gleixner
- Molecular
Biogeochemistry, Department of Biogeochemical Processes, Max Planck Institute for Biogeochemistry, Hans-Knöll-Straße 10, 07745 Jena, Germany
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22
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Chen X, Liu J, Chen J, Wang J, Xiao X, He C, Shi Q, Li G, Jiao N. Oxygen availability driven trends in DOM molecular composition and reactivity in a seasonally stratified fjord. WATER RESEARCH 2022; 220:118690. [PMID: 35661504 DOI: 10.1016/j.watres.2022.118690] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 05/26/2022] [Accepted: 05/28/2022] [Indexed: 06/15/2023]
Abstract
Ocean deoxygenation could potentially trigger substantial changes in the composition and reactivity of dissolved organic matter (DOM) pool, which plays an important role in the global carbon cycle. To evaluate links between DOM dynamics and oxygen availability, we investigated the DOM composition under varying levels of oxygen in a seasonally hypoxic fjord through a monthly time-series over two years. We used ultrahigh-resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) to characterize DOM on a molecular level. We find a clear trend both in diversity and molecular composition of the DOM along the oxygen gradient. As oxygen decreased, the chemodiversity was significantly increased, along with accumulation of relatively high-molecular-weight, reduced and unsaturated compounds enriched with carboxyl-group structures, which were also thermodynamically less favorable to biodegradation. Our results suggested that oxygen depletion selectively protected otherwise bioavailable compounds from decomposition and may promote the accumulation of a larger recalcitrant DOM pool in the global ocean, which could provide negative feedback to the ocean carbon sequestration and climate change.
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Affiliation(s)
- Xiao Chen
- Institute of Marine Science and Technology, Shandong University, Qingdao, China; Joint Laboratory for Ocean Research and Education at Dalhousie University, Shandong University and Xiamen University, Halifax, Canada, Qingdao, China and Xiamen, China
| | - Jihua Liu
- Institute of Marine Science and Technology, Shandong University, Qingdao, China; Joint Laboratory for Ocean Research and Education at Dalhousie University, Shandong University and Xiamen University, Halifax, Canada, Qingdao, China and Xiamen, China; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou, China.
| | - Junfeng Chen
- Institute of Marine Science and Technology, Shandong University, Qingdao, China; Joint Laboratory for Ocean Research and Education at Dalhousie University, Shandong University and Xiamen University, Halifax, Canada, Qingdao, China and Xiamen, China
| | - Jianning Wang
- Joint Laboratory for Ocean Research and Education at Dalhousie University, Shandong University and Xiamen University, Halifax, Canada, Qingdao, China and Xiamen, China; State Key Laboratory for Marine Environmental Science and College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
| | - Xilin Xiao
- Joint Laboratory for Ocean Research and Education at Dalhousie University, Shandong University and Xiamen University, Halifax, Canada, Qingdao, China and Xiamen, China; State Key Laboratory for Marine Environmental Science and College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
| | - Chen He
- State Key Laboratory of Heavy Oil Processing, China University of Petroleum, Beijing, China
| | - Quan Shi
- State Key Laboratory of Heavy Oil Processing, China University of Petroleum, Beijing, China
| | - Gang Li
- Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
| | - Nianzhi Jiao
- Joint Laboratory for Ocean Research and Education at Dalhousie University, Shandong University and Xiamen University, Halifax, Canada, Qingdao, China and Xiamen, China; State Key Laboratory for Marine Environmental Science and College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
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23
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Ghosh Biswas R, Croxall MP, Lawrence RT, Soong R, Goh MC, Simpson AJ. A new perspective on the photocatalytic action of titanium dioxide on phenol elucidated using comprehensive multiphase NMR. NANOSCALE 2022; 14:9869-9876. [PMID: 35775921 DOI: 10.1039/d2nr01911f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Comprehensive Multiphase NMR (CMP-NMR) is a recently developed technique capable of simultaneously observing different phases - solutions, gels, and solids - while providing the chemical specificity of traditional NMR. With this new tool, the heterogeneous photocatalysis of phenol by titanium dioxide (P25 TiO2) is re-examined to gain information about the occurrence of reaction at different regions between the catalyst and the solution. It was found that the proportion of phenol in different phases changes over the course of the photodegradation period. The photocatalyst appears to preferentially degrade phenol molecules that are weakly associated with the surface, such that they have restricted mobility in a 'gel-like' state. Diffusion Ordered Spectroscopy (DOSY) corroborates the relative change in phenol signals between freely diffusing solution and diffusion restricted gels as measured using CMP-NMR. The surface of P25 TiO2 was found to foul over the course of the 200-hour photodegradation period that was monitored using the solid-state capabilities of the CMP-NMR. Finally, CMP-NMR showed differences in the photodegradation of phenol by P25 TiO2 to that of a TiO2-nitrogen doped graphene quantum dot (NGQD) composite. With the latter composite, no fouling of the surface was seen over time. This application of CMP-NMR to the field of catalysis demonstrates its potential to better understand and study photocatalytic systems in general.
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Affiliation(s)
- Rajshree Ghosh Biswas
- Department of Chemistry, University of Toronto, 80 St. George St, Toronto, Ontario, M5S 3H6, Canada.
| | - Mark P Croxall
- Department of Chemistry, University of Toronto, 80 St. George St, Toronto, Ontario, M5S 3H6, Canada.
| | - Reece T Lawrence
- Department of Materials Science and Engineering, University of Toronto, 184 College St, Toronto, Ontario, M5S 3E4, Canada
| | - Ronald Soong
- Department of Physical and Environmental Science, University of Toronto, Scarborough Campus, 1265 Military Trail, Toronto, Ontario, M1C 1A4, Canada
| | - M Cynthia Goh
- Department of Chemistry, University of Toronto, 80 St. George St, Toronto, Ontario, M5S 3H6, Canada.
- Department of Materials Science and Engineering, University of Toronto, 184 College St, Toronto, Ontario, M5S 3E4, Canada
| | - Andre J Simpson
- Department of Chemistry, University of Toronto, 80 St. George St, Toronto, Ontario, M5S 3H6, Canada.
- Department of Physical and Environmental Science, University of Toronto, Scarborough Campus, 1265 Military Trail, Toronto, Ontario, M1C 1A4, Canada
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24
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Ghosh Biswas R, Soong R, Ning P, Lane D, Bastawrous M, Jenne A, Schmidig D, de Castro P, Graf S, Kuehn T, Kümmerle R, Bermel W, Busse F, Struppe J, Simpson MJ, Simpson AJ. Exploring the Applications of Carbon-Detected NMR in Living and Dead Organisms Using a 13C-Optimized Comprehensive Multiphase NMR Probe. Anal Chem 2022; 94:8756-8765. [PMID: 35675504 DOI: 10.1021/acs.analchem.2c01356] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Comprehensive multiphase-nuclear magnetic resonance (CMP-NMR) is a non-invasive approach designed to observe all phases (solutions, gels, and solids) in intact samples using a single NMR probe. Studies of dead and living organisms are important to understand processes ranging from biological growth to environmental stress. Historically, such studies have utilized 1H-based phase editing for the detection of soluble/swollen components and 1H-detected 2D NMR for metabolite assignments/screening. However, living organisms require slow spinning rates (∼500 Hz) to increase survivability, but at such low speeds, complications from water sidebands and spectral overlap from the modest chemical shift window (∼0-10 ppm) make 1H NMR challenging. Here, a novel 13C-optimized E-Free magic angle spinning CMP probe is applied to study all phases in ex vivo and in vivo samples. This probe consists of a two-coil design, with an inner single-tuned 13C coil providing a 113% increase in 13C sensitivity relative to a traditional multichannel single-CMP coil design. For organisms with a large biomass (∼0.1 g) like the Ganges River sprat (ex vivo), 13C-detected full spectral editing and 13C-detected heteronuclear correlation (HETCOR) can be performed at natural abundance. Unfortunately, for a single living shrimp (∼2 mg), 13C enrichment was still required, but 13C-detected HETCOR shows superior data relative to heteronuclear single-quantum coherence at low spinning speeds (due to complications from water sidebands in the latter). The probe is equipped with automatic-tuning-matching and is compatible with automated gradient shimming─a key step toward conducting multiphase screening of dead and living organisms under automation in the near future.
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Affiliation(s)
| | - Ronald Soong
- Environmental NMR Centre, University of Toronto, Toronto, Ontario M1C 1A4, Canada
| | - Paris Ning
- Environmental NMR Centre, University of Toronto, Toronto, Ontario M1C 1A4, Canada
| | - Daniel Lane
- Environmental NMR Centre, University of Toronto, Toronto, Ontario M1C 1A4, Canada
| | - Monica Bastawrous
- Environmental NMR Centre, University of Toronto, Toronto, Ontario M1C 1A4, Canada
| | - Amy Jenne
- Environmental NMR Centre, University of Toronto, Toronto, Ontario M1C 1A4, Canada
| | - Daniel Schmidig
- Bruker BioSpin AG, Industriestrasse 26, Fällanden 8117, Switzerland
| | - Peter de Castro
- Bruker BioSpin AG, Industriestrasse 26, Fällanden 8117, Switzerland
| | - Stephan Graf
- Bruker BioSpin AG, Industriestrasse 26, Fällanden 8117, Switzerland
| | - Till Kuehn
- Bruker BioSpin AG, Industriestrasse 26, Fällanden 8117, Switzerland
| | - Rainer Kümmerle
- Bruker BioSpin AG, Industriestrasse 26, Fällanden 8117, Switzerland
| | - Wolfgang Bermel
- Bruker BioSpin GmbH, Rudolf-Plank-Str. 23, 76275 Ettlingen, Germany
| | - Falko Busse
- Bruker BioSpin GmbH, Rudolf-Plank-Str. 23, 76275 Ettlingen, Germany
| | - Jochem Struppe
- Bruker Corporation, 15 Fortune Drive, Billerica, Massachusetts 01821-3991, USA
| | - Myrna J Simpson
- Environmental NMR Centre, University of Toronto, Toronto, Ontario M1C 1A4, Canada
| | - André J Simpson
- Environmental NMR Centre, University of Toronto, Toronto, Ontario M1C 1A4, Canada
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25
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McDonough LK, Andersen MS, Behnke MI, Rutlidge H, Oudone P, Meredith K, O'Carroll DM, Santos IR, Marjo CE, Spencer RGM, McKenna AM, Baker A. A new conceptual framework for the transformation of groundwater dissolved organic matter. Nat Commun 2022; 13:2153. [PMID: 35444183 PMCID: PMC9021313 DOI: 10.1038/s41467-022-29711-9] [Citation(s) in RCA: 42] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Accepted: 03/16/2022] [Indexed: 11/09/2022] Open
Abstract
Groundwater comprises 95% of the liquid fresh water on Earth and contains a diverse mix of dissolved organic matter (DOM) molecules which play a significant role in the global carbon cycle. Currently, the storage times and degradation pathways of groundwater DOM are unclear, preventing an accurate estimate of groundwater carbon sources and sinks for global carbon budgets. Here we reveal the transformations of DOM in aging groundwater using ultra-high resolution mass spectrometry combined with radiocarbon dating. Long-term anoxia and a lack of photodegradation leads to the removal of oxidised DOM and a build-up of both reduced photodegradable formulae and aerobically biolabile formulae with a strong microbial signal. This contrasts with the degradation pathway of DOM in oxic marine, river, and lake systems. Our findings suggest that processes such as groundwater extraction and subterranean groundwater discharge to oceans could result in up to 13 Tg of highly photolabile and aerobically biolabile groundwater dissolved organic carbon released to surface environments per year, where it can be rapidly degraded. These findings highlight the importance of considering groundwater DOM in global carbon budgets.
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Affiliation(s)
- Liza K McDonough
- Australian Nuclear Science and Technology Organisation (ANSTO), New Illawarra Rd, Lucas Heights, NSW, 2234, Australia. .,Connected Waters Initiative Research Centre, UNSW Sydney, Sydney, NSW, 2052, Australia.
| | - Martin S Andersen
- Connected Waters Initiative Research Centre, UNSW Sydney, Sydney, NSW, 2052, Australia.,School of Civil and Environmental Engineering, UNSW Sydney, Sydney, NSW, 2052, Australia
| | - Megan I Behnke
- Department of Earth, Ocean, and Atmospheric Science, Florida State University, Tallahassee, FL, 32310, USA
| | - Helen Rutlidge
- Connected Waters Initiative Research Centre, UNSW Sydney, Sydney, NSW, 2052, Australia.,School of Civil and Environmental Engineering, UNSW Sydney, Sydney, NSW, 2052, Australia
| | - Phetdala Oudone
- Connected Waters Initiative Research Centre, UNSW Sydney, Sydney, NSW, 2052, Australia.,School of Biological, Earth and Environmental Sciences, UNSW Sydney, Sydney, NSW, 2052, Australia
| | - Karina Meredith
- Australian Nuclear Science and Technology Organisation (ANSTO), New Illawarra Rd, Lucas Heights, NSW, 2234, Australia
| | - Denis M O'Carroll
- Connected Waters Initiative Research Centre, UNSW Sydney, Sydney, NSW, 2052, Australia.,School of Civil and Environmental Engineering, UNSW Sydney, Sydney, NSW, 2052, Australia
| | - Isaac R Santos
- National Marine Science Centre, Southern Cross University, Coffs Harbour, NSW, 2450, Australia
| | - Christopher E Marjo
- Mark Wainwright Analytical Centre, UNSW Sydney, Sydney, NSW, 2052, Australia
| | - Robert G M Spencer
- Department of Earth, Ocean, and Atmospheric Science, Florida State University, Tallahassee, FL, 32310, USA
| | - Amy M McKenna
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, FL, 32310-4005, USA
| | - Andy Baker
- Connected Waters Initiative Research Centre, UNSW Sydney, Sydney, NSW, 2052, Australia.,School of Biological, Earth and Environmental Sciences, UNSW Sydney, Sydney, NSW, 2052, Australia
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26
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Moxley-Paquette V, Wu B, Lane D, Bastawrous M, Ning P, Soong R, De Castro P, Kovacevic I, Frei T, Stuessi J, Al Adwan-Stojilkovic D, Graf S, Vincent F, Schmidig D, Kuehn T, Kuemmerle R, Beck A, Fey M, Bermel W, Busse F, Gundy M, Boenisch H, Heumann H, Nashman B, Dutta Majumdar R, Lacerda A, Simpson AJ. Evaluation of double-tuned single-sided planar microcoils for the analysis of small 13 C enriched biological samples using 1 H- 13 C 2D heteronuclear correlation NMR spectroscopy. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2022; 60:386-397. [PMID: 34647646 DOI: 10.1002/mrc.5227] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Revised: 10/06/2021] [Accepted: 10/07/2021] [Indexed: 06/13/2023]
Abstract
Microcoils provide a cost-effective approach to improve detection limits for mass-limited samples. Single-sided planar microcoils are advantageous in comparison to volume coils, in that the sample can simply be placed on top. However, the considerable drawback is that the RF field that is produced by the coil decreases with distance from the coil surface, which potentially limits more complex multi-pulse NMR pulse sequences. Unfortunately, 1 H NMR alone is not very informative for intact biological samples due to line broadening caused by magnetic susceptibility distortions, and 1 H-13 C 2D NMR correlations are required to provide the additional spectral dispersion for metabolic assignments in vivo or in situ. To our knowledge, double-tuned single-sided microcoils have not been applied for the 2D 1 H-13 C analysis of intact 13 C enriched biological samples. Questions include the following: Can 1 H-13 C 2D NMR be performed on single-sided planar microcoils? If so, do they still hold sensitivity advantages over conventional 5 mm NMR technology for mass limited samples? Here, 2D 1 H-13 C HSQC, HMQC, and HETCOR variants were compared and then applied to 13 C enriched broccoli seeds and Daphnia magna (water fleas). Compared to 5 mm NMR probes, the microcoils showed a sixfold improvement in mass sensitivity (albeit only for a small localized region) and allowed for the identification of metabolites in a single intact D. magna for the first time. Single-sided planar microcoils show practical benefit for 1 H-13 C NMR of intact biological samples, if localized information within ~0.7 mm of the 1 mm I.D. planar microcoil surface is of specific interest.
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Affiliation(s)
| | - Bing Wu
- Environmental NMR Center, University of Toronto, Toronto, Ontario, Canada
| | - Daniel Lane
- Environmental NMR Center, University of Toronto, Toronto, Ontario, Canada
| | - Monica Bastawrous
- Environmental NMR Center, University of Toronto, Toronto, Ontario, Canada
| | - Paris Ning
- Environmental NMR Center, University of Toronto, Toronto, Ontario, Canada
| | - Ronald Soong
- Environmental NMR Center, University of Toronto, Toronto, Ontario, Canada
| | - Peter De Castro
- Magnetic Resonance Spectroscopy Division, Bruker BioSpin AG, Fällanden, Switzerland
| | - Ivan Kovacevic
- Magnetic Resonance Spectroscopy Division, Bruker BioSpin AG, Fällanden, Switzerland
| | - Thomas Frei
- Magnetic Resonance Spectroscopy Division, Bruker BioSpin AG, Fällanden, Switzerland
| | - Juerg Stuessi
- Magnetic Resonance Spectroscopy Division, Bruker BioSpin AG, Fällanden, Switzerland
| | | | - Stephan Graf
- Magnetic Resonance Spectroscopy Division, Bruker BioSpin AG, Fällanden, Switzerland
| | - Franck Vincent
- Magnetic Resonance Spectroscopy Division, Bruker BioSpin AG, Fällanden, Switzerland
| | - Daniel Schmidig
- Magnetic Resonance Spectroscopy Division, Bruker BioSpin AG, Fällanden, Switzerland
| | - Till Kuehn
- Magnetic Resonance Spectroscopy Division, Bruker BioSpin AG, Fällanden, Switzerland
| | - Rainer Kuemmerle
- Magnetic Resonance Spectroscopy Division, Bruker BioSpin AG, Fällanden, Switzerland
| | - Armin Beck
- Magnetic Resonance Spectroscopy Division, Bruker BioSpin AG, Fällanden, Switzerland
| | - Michael Fey
- Magnetic Resonance Spectroscopy Division, Bruker Corporation, Billerica, MA, USA
| | - Wolfgang Bermel
- Magnetic Resonance Spectroscopy Division, Bruker Biospin GmbH, Rheinstetten, Germany
| | - Falko Busse
- Magnetic Resonance Spectroscopy Division, Bruker Biospin GmbH, Rheinstetten, Germany
| | - Marcel Gundy
- Research and Development, Silantes GmbH, Munich, Germany
| | | | | | - Ben Nashman
- Research and Development, Synex Medical, Toronto, Ontario, Canada
| | | | - Andressa Lacerda
- Research and Development, Synex Medical, Toronto, Ontario, Canada
| | - André J Simpson
- Environmental NMR Center, University of Toronto, Toronto, Ontario, Canada
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27
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Zherebker A, Rukhovich GD, Sarycheva A, Lechtenfeld OJ, Nikolaev EN. Aromaticity Index with Improved Estimation of Carboxyl Group Contribution for Biogeochemical Studies. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:2729-2737. [PMID: 35084826 DOI: 10.1021/acs.est.1c04575] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Natural organic matter (NOM) components measured with ultrahigh-resolution mass spectrometry (UHRMS) are often assessed by molecular formula-based indices, particularly related to their aromaticity, which are further used as proxies to explain biogeochemical reactivity. An aromaticity index (AI) is calculated mostly with respect to carboxylic groups abundant in NOM. Here, we propose a new constrained AIcon based on the measured distribution of carboxylic groups among individual NOM components obtained by deuteromethylation and UHRMS. Applied to samples from diverse sources (coal, marine, peat, permafrost, blackwater river, and soil), the method revealed that the most probable number of carboxylic groups was two, which enabled to set a reference point n = 2 for carboxyl-accounted AIcon calculation. The examination of the proposed AIcon showed the smallest deviation to the experimentally determined index for all NOM samples under study as well as for individual natural compounds obtained from the Coconut database. In particular, AIcon performed better than AImod for all compound classes in which aromatic moieties are expected: aromatics, condensed aromatics, and unsaturated compounds. Therefore, AIcon referenced with two carboxyl groups is preferred over conventional AI and AImod for biogeochemical studies where the aromaticity of compounds is important to understand the transformations and fate of NOM compounds.
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Affiliation(s)
| | - Gleb D Rukhovich
- Skolkovo Institute of Science and Technology, Moscow 121205, Russia
| | | | - Oliver J Lechtenfeld
- Department of Analytical Chemistry, Research Group BioGeoOmics, Helmholtz Centre for Environmental Research─UFZ, Leipzig DE-04318, Germany
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28
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Leyva D, Tariq MU, Jaffé R, Saeed F, Lima FF. Unsupervised Structural Classification of Dissolved Organic Matter Based on Fragmentation Pathways. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:1458-1468. [PMID: 34981937 DOI: 10.1021/acs.est.1c04726] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Dissolved organic matter (DOM) is considered an essential component of the Earth's ecological and biogeochemical processes. Structural information of DOM components at the molecular level remains one of the most extraordinary analytical challenges. Advances in determination of chemical formulas from the molecular studies of DOM have provided limited indications on structural signatures and potential reaction pathways. In this work, we extend the structural characterization of a wetland DOM sample using precursor and fragment molecular ions obtained by a sequential electrospray ionization-Fourier transform-ion cyclotron resonance tandem mass spectrometry (ESI-FT-ICR CASI-CID MS/MS) approach. The DOM chemical complexity resulted in near 900 precursors (P) and 24 000 fragment (F) molecular ions over a small m/z 261-477 range. The DOM structural content was dissected into families of structurally connected precursors based on neutral mass loss patterns (Pn-1 + F1:n + C) across the two-dimensional (2D) MS/MS space. This workflow identified over 1900 structural families of DOM compounds based on a precursor and neutral loss (H2O, CH4O, and CO2). The inspection of structural families showed a high degree of isomeric content (numerous identical fragmentation pathways), not discriminable with sole precursor ion analysis. The connectivity map of structural families allows for the visualization of potential biogeochemical processes that DOM undergoes throughout its lifetime. This study illustrates that integrating effective computational tools on a comprehensive high-resolution mass fragmentation strategy further enables the DOM structural characterization.
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Affiliation(s)
- Dennys Leyva
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States
| | - Muhammad Usman Tariq
- School of Computing and Information Science, Florida International University, Miami, Florida 33199, United States
| | - Rudolf Jaffé
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States
| | - Fahad Saeed
- School of Computing and Information Science, Florida International University, Miami, Florida 33199, United States
| | - Francisco Fernandez Lima
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States
- Biomolecular Sciences Institute, Florida International University, Miami, Florida 33199, United States
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Trifiró G, York R, Bell NGA. High-Resolution Molecular-Level Characterization of a Blanket Bog Peat Profile. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:660-671. [PMID: 34932324 DOI: 10.1021/acs.est.1c05837] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
To understand peatland carbon-cycling processes ultimately requires the ability to track changes occurring on the molecular-level. In this study, we profile a peat core taken from the world's largest blanket bog, Flow Country, Scotland, using physicochemical properties, ATR-FTIR, solid/liquid-state NMR, and solid/liquid-state FT-ICR-MS. Air-dried peat and labile and recalcitrant peat extracts, including pore water dissolved organic matter (PW-DOM), are analyzed and the merits of each technique are discussed. Solid-state NMR demonstrated changing distribution of compound classes with core depth and water table, the latter not picked up by IR. Liquid-state NMR and MS both demonstrated variations in molecular composition along the core depth in all phases and extracts. Contrary to previous reports, the composition of PW-DOM varied with depth. Major compounds, some previously unreported, identified by 1D/2D NMR occurred throughout the core, suggesting the existence of hot spots of microbial activity/compound accumulation. Offering complementary views, the techniques provided evidence of gradual molecular level changes with age, zonation due to the water table, and hot spots due to microbial activity. This study provides new insights into the molecular signatures of peat layers and establishes the foundation for examining peat function and health at the molecular-level.
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Affiliation(s)
- Gianluca Trifiró
- University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh EH9 3FJ, United Kingdom
| | - Richard York
- University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh EH9 3FJ, United Kingdom
| | - Nicholle G A Bell
- University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh EH9 3FJ, United Kingdom
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Anaraki MT, Lysak DH, Downey K, Kock FVC, You X, Majumdar RD, Barison A, Lião LM, Ferreira AG, Decker V, Goerling B, Spraul M, Godejohann M, Helm PA, Kleywegt S, Jobst K, Soong R, Simpson MJ, Simpson AJ. NMR spectroscopy of wastewater: A review, case study, and future potential. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2021; 126-127:121-180. [PMID: 34852923 DOI: 10.1016/j.pnmrs.2021.08.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2021] [Revised: 08/12/2021] [Accepted: 08/13/2021] [Indexed: 06/13/2023]
Abstract
NMR spectroscopy is arguably the most powerful tool for the study of molecular structures and interactions, and is increasingly being applied to environmental research, such as the study of wastewater. With over 97% of the planet's water being saltwater, and two thirds of freshwater being frozen in the ice caps and glaciers, there is a significant need to maintain and reuse the remaining 1%, which is a precious resource, critical to the sustainability of most life on Earth. Sanitation and reutilization of wastewater is an important method of water conservation, especially in arid regions, making the understanding of wastewater itself, and of its treatment processes, a highly relevant area of environmental research. Here, the benefits, challenges and subtleties of using NMR spectroscopy for the analysis of wastewater are considered. First, the techniques available to overcome the specific challenges arising from the nature of wastewater (which is a complex and dilute matrix), including an examination of sample preparation and NMR techniques (such as solvent suppression), in both the solid and solution states, are discussed. Then, the arsenal of available NMR techniques for both structure elucidation (e.g., heteronuclear, multidimensional NMR, homonuclear scalar coupling-based experiments) and the study of intermolecular interactions (e.g., diffusion, nuclear Overhauser and saturation transfer-based techniques) in wastewater are examined. Examples of wastewater NMR studies from the literature are reviewed and potential areas for future research are identified. Organized by nucleus, this review includes the common heteronuclei (13C, 15N, 19F, 31P, 29Si) as well as other environmentally relevant nuclei and metals such as 27Al, 51V, 207Pb and 113Cd, among others. Further, the potential of additional NMR methods such as comprehensive multiphase NMR, NMR microscopy and hyphenated techniques (for example, LC-SPE-NMR-MS) for advancing the current understanding of wastewater are discussed. In addition, a case study that combines natural abundance (i.e. non-concentrated), targeted and non-targeted NMR to characterize wastewater, along with in vivo based NMR to understand its toxicity, is included. The study demonstrates that, when applied comprehensively, NMR can provide unique insights into not just the structure, but also potential impacts, of wastewater and wastewater treatment processes. Finally, low-field NMR, which holds considerable future potential for on-site wastewater monitoring, is briefly discussed. In summary, NMR spectroscopy is one of the most versatile tools in modern science, with abilities to study all phases (gases, liquids, gels and solids), chemical structures, interactions, interfaces, toxicity and much more. The authors hope this review will inspire more scientists to embrace NMR, given its huge potential for both wastewater analysis in particular and environmental research in general.
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Affiliation(s)
- Maryam Tabatabaei Anaraki
- Environmental NMR Center, University of Toronto Scarborough, 1265 Military Trail, Toronto M1C1A4, Canada
| | - Daniel H Lysak
- Environmental NMR Center, University of Toronto Scarborough, 1265 Military Trail, Toronto M1C1A4, Canada
| | - Katelyn Downey
- Environmental NMR Center, University of Toronto Scarborough, 1265 Military Trail, Toronto M1C1A4, Canada
| | - Flávio Vinicius Crizóstomo Kock
- Environmental NMR Center, University of Toronto Scarborough, 1265 Military Trail, Toronto M1C1A4, Canada; Department of Chemistry, Federal University of São Carlos-SP (UFSCar), São Carlos, SP, Brazil
| | - Xiang You
- Environmental NMR Center, University of Toronto Scarborough, 1265 Military Trail, Toronto M1C1A4, Canada
| | - Rudraksha D Majumdar
- Environmental NMR Center, University of Toronto Scarborough, 1265 Military Trail, Toronto M1C1A4, Canada; Synex Medical, 2 Bloor Street E, Suite 310, Toronto, ON M4W 1A8, Canada
| | - Andersson Barison
- NMR Center, Federal University of Paraná, CP 19081, 81530-900 Curitiba, PR, Brazil
| | - Luciano Morais Lião
- NMR Center, Institute of Chemistry, Universidade Federal de Goiás, Goiânia 74690-900, Brazil
| | | | - Venita Decker
- Bruker Biospin GmbH, Silberstreifen 4, 76287 Rheinstetten, Germany
| | | | - Manfred Spraul
- Bruker Biospin GmbH, Silberstreifen 4, 76287 Rheinstetten, Germany
| | | | - Paul A Helm
- Environmental Monitoring & Reporting Branch, Ontario Ministry of the Environment, Toronto M9P 3V6, Canada
| | - Sonya Kleywegt
- Technical Assessment and Standards Development Branch, Ontario Ministry of the Environment, Conservation and Parks, Toronto, ON M4V 1M2, Canada
| | - Karl Jobst
- Memorial University of Newfoundland, St. John's, NL A1C 5S7, Canada
| | - Ronald Soong
- Environmental NMR Center, University of Toronto Scarborough, 1265 Military Trail, Toronto M1C1A4, Canada
| | - Myrna J Simpson
- Environmental NMR Center, University of Toronto Scarborough, 1265 Military Trail, Toronto M1C1A4, Canada
| | - Andre J Simpson
- Environmental NMR Center, University of Toronto Scarborough, 1265 Military Trail, Toronto M1C1A4, Canada.
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31
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Zhang H, Zheng Y, Wang XC, Wang Y, Dzakpasu M. Characterization and biogeochemical implications of dissolved organic matter in aquatic environments. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 294:113041. [PMID: 34126535 DOI: 10.1016/j.jenvman.2021.113041] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Revised: 05/12/2021] [Accepted: 06/06/2021] [Indexed: 06/12/2023]
Abstract
Dissolved organic matter (DOM) is viewed as one of the most chemically active organic substances on earth. It plays vital roles in the fate, bioavailability and toxicity of aquatic exogenous chemical species (e.g., heavy metals, organic pollutants, and nanomaterials). The characteristics of DOM such low concentrations, salt interference and complexity in aquatic environments and limitations of pretreatment for sample preparation and application of characterization techniques severely limit understanding of its nature and environmental roles. This review provides a characterization continuum of aquatic DOM, and demonstrate its biogeochemical implications, enabling in-depth insight into its nature and environmental roles. A synthesis of the effective DOM pretreatment strategies, comprising extraction and fractionation methods, and characterization techniques is presented. Additionally, the biogeochemical dynamics of aquatic DOM and its environmental implications are discussed. The findings indicate the collection of representative DOM samples from water as the first and critical step for characterizing its properties, dynamics, and environmental implications. However, various pretreatment procedures may alter DOM composition and structure, producing highly variable recoveries and even influencing its subsequent characterization. Therefore, complimentary use of various characterization techniques is highly recommended to obtain as much information on DOM as possible, as each characterization technique exhibits various advantages and limitations. Moreover, DOM could markedly change the physical and chemical properties of exogenous chemical species, influencing their transformation and mobility, and finally altering their potential bioavailability and toxicity. Several research gaps to be addressed include the impact of pretreatment on the composition and structure of aquatic DOM, molecular-level structural elucidation for DOM, and assessment of the effects of DOM dynamics on the fate, bioavailability and toxicity of exogenous chemical species.
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Affiliation(s)
- Hengfeng Zhang
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China; International Science & Technology Cooperation Center for Urban Alternative Water Resources Development, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China
| | - Yucong Zheng
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China; International Science & Technology Cooperation Center for Urban Alternative Water Resources Development, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China
| | - Xiaochang C Wang
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China; International Science & Technology Cooperation Center for Urban Alternative Water Resources Development, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China
| | - Yongkun Wang
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China; International Science & Technology Cooperation Center for Urban Alternative Water Resources Development, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China
| | - Mawuli Dzakpasu
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China; International Science & Technology Cooperation Center for Urban Alternative Water Resources Development, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China.
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Hansell DA, Orellana MV. Dissolved Organic Matter in the Global Ocean: A Primer. Gels 2021; 7:gels7030128. [PMID: 34563014 PMCID: PMC8482078 DOI: 10.3390/gels7030128] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Revised: 08/17/2021] [Accepted: 08/26/2021] [Indexed: 11/19/2022] Open
Abstract
Marine dissolved organic matter (DOM) holds ~660 billion metric tons of carbon, making it one of Earth’s major carbon reservoirs that is exchangeable with the atmosphere on annual to millennial time scales. The global ocean scale dynamics of the pool have become better illuminated over the past few decades, and those are very briefly described here. What is still far from understood is the dynamical control on this pool at the molecular level; in the case of this Special Issue, the role of microgels is poorly known. This manuscript provides the global context of a large pool of marine DOM upon which those missing insights can be built.
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Affiliation(s)
- Dennis A. Hansell
- Department of Ocean Sciences, RSMAS, University of Miami, Miami, FL 33149, USA
- Correspondence:
| | - Mónica V. Orellana
- Polar Science Center, Applied Physics Laboratory, University of Washington, Seattle, WA 98105, USA;
- Institute for Systems Biology, Seattle, WA 98109, USA
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33
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Zhang Y, Wang K, Tong H, Huang RJ, Hoffmann T. The maximum carbonyl ratio (MCR) as a new index for the structural classification of secondary organic aerosol components. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2021; 35:e9113. [PMID: 33908097 DOI: 10.1002/rcm.9113] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 04/18/2021] [Accepted: 04/20/2021] [Indexed: 06/12/2023]
Abstract
RATIONALE Organic aerosols (OA) account for a large fraction of atmospheric fine particulate matter and thus are affecting climate and public health. Elucidation of the chemical composition of OA is the key for addressing the role of ambient fine particles at the atmosphere-biosphere interface and mass spectrometry is the main method to achieve this goal. METHODS High-resolution mass spectrometry (HRMS) is on its way to becoming one of the most prominent analytical techniques, also for the analysis of atmospheric aerosols. The combination of high mass resolution and accurate mass determination allows the elemental compositions of numerous compounds to be easily elucidated. Here a new parameter for the improved classification of OA is introduced - the maximum carbonyl ratio (MCR) - which is directly derived from the molecular composition and is particularly suitable for the identification and characterization of secondary organic aerosols (SOA). RESULTS The concept is exemplified by the analysis of ambient OA samples from two measurement sites (Hyytiälä, Finland; Beijing, China) and of laboratory-generated SOA based on ultrahigh-performance liquid chromatography (UHPLC) coupled to Orbitrap MS. To interpret the results, MCR-Van Krevelen (VK) diagrams are generated for the different OA samples and the individual compounds are categorized into specific areas in the diagrams. The results show that the MCR index is a valuable parameter for representing atmospheric SOA components in composition and structure-dependent visualization tools such as VK diagrams. CONCLUSIONS The MCR index is suggested as a tool for a better characterization of the sources and the processing of atmospheric OA components based on HRMS data. Since the MCR contains information on the concentration of highly electrophilic organic compounds in particulate matter (PM) as well as on the concentration of organic (hydro)peroxides, the MCR could be a promising metric for identifying health-related particulate matter parameters by HRMS.
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Affiliation(s)
- Yun Zhang
- Department of Chemistry, Johannes Gutenberg University, Mainz, 55128, Germany
| | - Kai Wang
- Key Laboratory of Plant-Soil Interactions of MOE, College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, China Agricultural University, Beijing, 100193, China
| | - Haijie Tong
- Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Kowloon, Hong Kong, China
| | - Ru-Jin Huang
- State Key Laboratory of Loess and Quaternary Geology, Key Laboratory of Aerosol Chemistry and Physics, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an, 710061, China
| | - Thorsten Hoffmann
- Department of Chemistry, Johannes Gutenberg University, Mainz, 55128, Germany
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34
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Bahureksa W, Tfaily MM, Boiteau RM, Young RB, Logan MN, McKenna AM, Borch T. Soil Organic Matter Characterization by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FTICR MS): A Critical Review of Sample Preparation, Analysis, and Data Interpretation. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021; 55:9637-9656. [PMID: 34232025 DOI: 10.1021/acs.est.1c01135] [Citation(s) in RCA: 51] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
The biogeochemical cycling of soil organic matter (SOM) plays a central role in regulating soil health, water quality, carbon storage, and greenhouse gas emissions. Thus, many studies have been conducted to reveal how anthropogenic and climate variables affect carbon sequestration and nutrient cycling. Among the analytical techniques used to better understand the speciation and transformation of SOM, Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS) is the only technique that has sufficient mass resolving power to separate and accurately assign elemental compositions to individual SOM molecules. The global increase in the application of FTICR MS to address SOM complexity has highlighted the many challenges and opportunities associated with SOM sample preparation, FTICR MS analysis, and mass spectral interpretation. Here, we provide a critical review of recent strategies for SOM characterization by FTICR MS with emphasis on SOM sample collection, preparation, analysis, and data interpretation. Data processing and visualization methods are presented with suggested workflows that detail the considerations needed for the application of molecular information derived from FTICR MS. Finally, we highlight current research gaps, biases, and future directions needed to improve our understanding of organic matter chemistry and cycling within terrestrial ecosystems.
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Affiliation(s)
- William Bahureksa
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, United States
| | - Malak M Tfaily
- Department of Environmental Science, University of Arizona, Tucson, Arizona 85721, United States
| | - Rene M Boiteau
- College of Earth, Ocean, Atmospheric Sciences, Oregon State University, Corvallis, Oregon 97331, United States
| | - Robert B Young
- Department of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado 80523-1170, United States
| | - Merritt N Logan
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, United States
| | - Amy M McKenna
- National High Magnetic Field Laboratory, Florida State University, 1800 East Paul Dirac Dr., Tallahassee, Florida 32310-4005, United States
| | - Thomas Borch
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, United States
- Department of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado 80523-1170, United States
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35
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Thompson AM, Stratton KG, Bramer LM, Zavoshy NS, McCue LA. Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) peak intensity normalization for complex mixture analyses. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2021; 35:e9068. [PMID: 33590907 DOI: 10.1002/rcm.9068] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Revised: 02/03/2021] [Accepted: 02/12/2021] [Indexed: 06/12/2023]
Abstract
RATIONALE Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) is a preferred technique for analyzing complex organic mixtures. Currently, there is no consensus normalization approach, nor an objective method for selecting one, for quantitative analyses of FT-ICR-MS data. We investigate a method to evaluate and score the amount of bias various normalization approaches introduce into the data. METHODS We evaluate the ability of the Statistical Procedure for the Analysis of Normalization Strategies (SPANS) to guide the selection of appropriate normalization approaches for two different FT-ICR-MS data sets. Furthermore, we test the robustness of SPANS results to changes in SPANS parameter values and assess the impact of using various normalization approaches on downstream statistical analyses. RESULTS The normalization approach identified by SPANS differed for the two data sets. Normalization methods impacted the statistical significance of peaks differently, underscoring the importance of carefully evaluating potential methods. More consistent SPANS scores resulted when at least 120 significant peaks are used, where larger sets of peaks were obtained by increasing the p-value threshold. Interestingly, we show that total sum scaling and highest peak normalization, used in previous studies, underperformed relative to SPANS-recommended normalization approaches. CONCLUSIONS Although there is no single, best normalization method for all data sets, SPANS provides a mechanism to identify an appropriate normalization method for analyzing FT-ICR-MS data quantitatively. The number of peaks used in the background distributions of SPANS contributes more significantly to the reproducibility of results than the p-value thresholds used to obtain those peaks.
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Affiliation(s)
- Allison M Thompson
- Environmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Kelly G Stratton
- National Security Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Lisa M Bramer
- National Security Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Nicole S Zavoshy
- National Security Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Lee Ann McCue
- Environmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
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Özcan S, Levent S, Can NÖ. Challenges, Progress and Promises of Impurities Annotation for LCMSIT- TOF. CURR PHARM ANAL 2021. [DOI: 10.2174/1573412916999200616125353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
:
Analysis of pharmaceutical products, as well as their active and inactive ingredients, and
identification and characterization of potential impurities originating from raw materials and manufacturing
processes is of importance in the field, especially for further assessment of potential positive or
negative effects on the human body. In addition to expected therapeutic effects, unfortunately, some
unwanted or adverse effects were encountered in the past, resulting in dramatic cases sometimes. These
challenges have been overcome with the use of sophisticated and high-end analytical techniques today
by focusing on developing more efficient, more accurate, more accessible, and faster determination
techniques.
:
One of the powerful techniques utilized under the given aim, especially for qualitative purposes, is the
Time of Flight (TOF) based Mass Spectrometry (MS). Among the TOF-MS instruments, liquid chromatography-
mass spectrometry-ion trap-time of flight (LCMS-IT-TOF) has a unique MSn capability,
which is a versatile tool in exact mass prediction and structure elucidation. In this review, LCMS-ITTOF
has been considered taking all aspects to account for its use in qualitative impurity profiling, and
a retrospective view on previous studies was presented in an analytical manner.
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Affiliation(s)
- Saniye Özcan
- Doping and Narcotic Compounds Analysis Laboratory, Faculty of Pharmacy, Anadolu University, 26470, Eskisehir,Turkey
| | - Serkan Levent
- Doping and Narcotic Compounds Analysis Laboratory, Faculty of Pharmacy, Anadolu University, 26470, Eskisehir,Turkey
| | - Nafiz Öncü Can
- Doping and Narcotic Compounds Analysis Laboratory, Faculty of Pharmacy, Anadolu University, 26470, Eskisehir,Turkey
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Zhang X, Chen Z, Huo X, Kang J, Zhao S, Peng Y, Deng F, Shen J, Chu W. Application of Fourier transform ion cyclotron resonance mass spectrometry in deciphering molecular composition of soil organic matter: A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 756:144140. [PMID: 33293083 DOI: 10.1016/j.scitotenv.2020.144140] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Revised: 11/03/2020] [Accepted: 11/23/2020] [Indexed: 06/12/2023]
Abstract
Swiftly deciphering soil organic matter (SOM) composition is critical for research on soil degradation and restoration. Recent advances in analytical techniques (e.g., optical methods and mass spectrometry) have expanded our understanding of the composition, origin, and evolution of SOM. In particular, the use of Fourier transform ion cyclotron resonance mass spectrometers (FTICR-MS) makes it possible to interpret SOM compositions at the molecular level. In this review, we discuss extraction, enrichment, and purification methods for SOM using FTICR-MS analysis; summarize ionization techniques, FTICR-MS mechanisms, data analysis methods, and molecular compositions of SOM in different environments (providing new insights into its origin and evolution); and discuss factors affecting its molecular diversity. Our results show that digenesis, combustion, pyrolysis, and biological metabolisms jointly contribute to the molecular diversity of SOM molecules. The SOM thus formed can further undergo photodegradation during transportation from land to fresh water (and subsequently oceans), resulting in the formation of dissolved organic matter (DOM). Better understanding the molecular features of DOM therefore accelerates our understanding of SOM evolution. In addition, we assess the degradation potential of SOM in different environments to better inform soil remediation methods. Finally, we discuss the merits and drawbacks of applying FTICR-MS on the analysis of SOM molecules, along with existing gaps in knowledge, challenges, and new opportunities for research in FTICR-MS applications and SOM identification.
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Affiliation(s)
- Xiaoxiao Zhang
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China; Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, China
| | - Zhonglin Chen
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Xiaoyu Huo
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Jing Kang
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Shenxin Zhao
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Yutao Peng
- Beijing Key Laboratory of Farmyard Soil Pollution Prevention-control and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Fengxia Deng
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Jimin Shen
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China.
| | - Wei Chu
- Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, China.
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Current trends and advances in analytical techniques for the characterization and quantification of biologically recalcitrant organic species in sludge and wastewater: A review. Anal Chim Acta 2021; 1152:338284. [PMID: 33648641 DOI: 10.1016/j.aca.2021.338284] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2020] [Revised: 01/28/2021] [Accepted: 01/30/2021] [Indexed: 12/21/2022]
Abstract
The study of organic matter in wastewater is a major regulatory and environmental issue and requires new developments to identify non-biodegradable refractory compounds, produced mainly by thermal treatments. Recent advances linking physicochemical properties to spectroscopic analyzes (UV, Fluorescence, IR) have shown that the refractory property is favored by several physicochemical parameters: weight, hydrophobicity, aromaticity and chemical functions. Currently, the most effective developments for the quantification of refractory compounds are obtained with hyphenated methods, based on steric separation of the macromolecular species by steric exclusion chromatography (SEC)/PDA/Fluorescence systems. Hyphenated techniques using High Resolution Mass Spectrometry (HRMS), ultra-high-resolution mass spectrometry with Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS) and NMR have been developed to analyze macromolecules in wastewater with minor sample preparation procedures. A particular class has been identified, the melanoidins, generated by Maillard reactions between sugars, amino acids, peptides and proteins present in wastewater and sludge, but low molecular weight compounds formed as intermediates, such as ketones, aldehydes, pyrazines, pyridines or furans, are also recalcitrant and are complex to identify in the complex matrices. The lack of available standards for the study of these compounds requires the use of specific techniques and data processing. Advances in chemometrics are obtained in the development of molecular or physicochemical indices resulting from the data generated by the analytical detectors, such as aromaticity calculated by SUVA254 and determined by UV, fluorescence, molar mass, H/C ratio or structural studies (measuring the amount of unsaturated carbon) given by hyphenated techniques with SEC. It is clear that nitrogen compounds are widely involved in refractoriness. New trends in nitrogen containing compounds characterization follow two axes: through SEC/PDA/Fluorescence and HRMS/NMR techniques with or without separation. Other techniques widely used in food or marine science are also being imported to this study, as it can be seen in the use of "omics" methods, high-performance thin layer chromatography (HPTLC) and chromatography at the critical condition, rounding out the important developments around SEC. While improving the performance of stationary phases is one of the challenges, it results in a fundamental understanding of the retention mechanisms that today provide us with more information on the structures identified. The main objective of this review is to present the spectroscopic and physicochemical techniques used to qualify and characterize refractoriness with a specific focus on chemometric approaches.
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Han L, Kaesler J, Peng C, Reemtsma T, Lechtenfeld OJ. Online Counter Gradient LC-FT-ICR-MS Enables Detection of Highly Polar Natural Organic Matter Fractions. Anal Chem 2021; 93:1740-1748. [PMID: 33370097 DOI: 10.1021/acs.analchem.0c04426] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Natural organic matter (NOM) is a highly complex mixture of natural organic molecules. The recent developments in NOM molecular characterization methods have shown that ESI-FT-ICR hyphenated with liquid chromatography (LC) is a promising approach to also obtain chemical information (such as polarity and molecular size) about NOM molecules. However, due to changing solvent composition during gradient elution in LC-FT-ICR-MS, ionization conditions also change throughout the chromatographic separation process. In this study, we applied a post-LC column counter gradient (CG) to ensure stable solvent conditions for transient ESI-MS signals. Suwanee River Fulvic Acid (SRFA) standard and a peat pore water were used as representative dissolved NOM samples for method development and validation. Our results show that in polar NOM fractions (which elute with <50% methanol) the TIC intensity and number of assigned molecular formulas were increased by 48% and 20%, as compared to the standard gradient (SG) method. Further application of a Q-isolation and selective ion accumulation for low abundance fractions revealed over 3 times more molecular formulas (especially for CHNO, CHOS, CHNOS formula classes) than in full scan mode. The number of detected highly polar NOM compounds (with elemental ratios H/C < 1, O/C > 0.6) were more than 20 times larger for CG-LC mode as compared to direct infusion (DI) (5715 vs 266 MF). We conclude that the application of a postcolumn counter gradient in LC-FT-ICR-MS analyses of NOM offers novel insight into the most polar fractions of NOM which are inaccessible in conventional DI measurements.
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Affiliation(s)
- Limei Han
- Department of Analytical Chemistry, Helmholtz Centre for Environmental Research (UFZ), 04318 Leipzig, Germany
| | - Jan Kaesler
- Department of Analytical Chemistry, Helmholtz Centre for Environmental Research (UFZ), 04318 Leipzig, Germany
| | - Chang Peng
- Institute of Analytical Chemistry, University of Leipzig, 04103 Leipzig, Germany
| | - Thorsten Reemtsma
- Department of Analytical Chemistry, Helmholtz Centre for Environmental Research (UFZ), 04318 Leipzig, Germany.,Institute of Analytical Chemistry, University of Leipzig, 04103 Leipzig, Germany
| | - Oliver J Lechtenfeld
- Department of Analytical Chemistry, Helmholtz Centre for Environmental Research (UFZ), 04318 Leipzig, Germany.,ProVIS-Centre for Chemical Microscopy, Helmholtz Centre for Environmental Research (UFZ), 04318 Leipzig, Germany
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40
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Kurek MR, Poulin BA, McKenna AM, Spencer RGM. Deciphering Dissolved Organic Matter: Ionization, Dopant, and Fragmentation Insights via Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:16249-16259. [PMID: 33211479 DOI: 10.1021/acs.est.0c05206] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Fourier transform-ion cyclotron resonance mass spectrometry (FT-ICR MS) has been increasingly employed to characterize dissolved organic matter (DOM) across a range of aquatic environments highlighting the role of DOM in global carbon cycling. DOM analysis commonly utilizes electrospray ionization (ESI), while some have implemented other techniques, including dopant-assisted atmospheric pressure photoionization (APPI). We compared various extracted DOM compositions analyzed by negative ESI and positive APPI doped with both toluene and tetrahydrofuran (THF), including a fragmentation study of THF-doped riverine DOM using infrared multiple photon dissociation (IRMPD). DOM compositions followed the same trends in ESI and dopant-assisted APPI with the latter presenting saturated, less oxygenated, and more N-containing compounds than ESI. Between the APPI dopants, THF-doping yielded spectra with more aliphatic-like and N-containing compounds than toluene-doping. We further demonstrate how fragmentation of THF-doped DOM in APPI resolved subtle differences between riverine DOM that was absent from ESI. In both ionization methods, we describe a linear relationship between atomic and formulaic N-compositions from a range of DOM extracts. This study highlights that THF-doped APPI is useful for uncovering low-intensity aliphatic and peptide-like components in autochthonous DOM, which could aid environmental assessments of DOM across biolability gradients.
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Affiliation(s)
- Martin R Kurek
- National High Magnetic Field Laboratory Geochemistry Group and Department of Earth, Ocean, and Atmospheric Science, Florida State University, Tallahassee, Florida 32306, United States
| | - Brett A Poulin
- U.S. Geological Survey, Water Mission Area, Boulder, Colorado 80303, United States
- Department of Environmental Toxicology, University of California Davis, Davis, California 95616, United States
| | - Amy M McKenna
- National High Magnetic Field Laboratory Ion Cyclotron Resonance Facility, Tallahassee, Florida 32310, United States
| | - Robert G M Spencer
- National High Magnetic Field Laboratory Geochemistry Group and Department of Earth, Ocean, and Atmospheric Science, Florida State University, Tallahassee, Florida 32306, United States
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41
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Herzsprung P, Wentzky V, Kamjunke N, von Tümpling W, Wilske C, Friese K, Boehrer B, Reemtsma T, Rinke K, Lechtenfeld OJ. Improved Understanding of Dissolved Organic Matter Processing in Freshwater Using Complementary Experimental and Machine Learning Approaches. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:13556-13565. [PMID: 32966053 DOI: 10.1021/acs.est.0c02383] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Dissolved organic matter plays an important role in aquatic ecosystems and poses a major problem for drinking water production. However, our understanding of DOM reactivity in natural systems is hampered by its complex molecular composition. Here, we used Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) and data from two independent studies to disentangle DOM reactivity based on photochemical and microbial-induced transformations. Robust correlations of FT-ICR-MS peak intensities with chlorophyll a and solar irradiation were used to define 9 reactivity classes for 1277 common molecular formulas. Germany's largest drinking water reservoir was sampled for 1 year, and DOM processing in stratified surface waters could be attributed to photochemical transformations during summer months. Microbial DOM alterations could be distinguished based on correlation coefficients with chlorophyll a and often shared molecular features (elemental ratios and mass) with photoreactive compounds. In particular, many photoproducts and some microbial products were identified as potential precursors of disinfection byproducts. Molecular DOM features were used to further predict molecular reactivity for the remaining compounds in the data set based on a random forest model. Our method offers an expandable classification approach to integrate the reactivity of DOM from specific environments and link it to molecular properties and chemistry.
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Affiliation(s)
- Peter Herzsprung
- Department Lake Research, UFZ - Helmholtz Centre for Environmental Research, Brückstraße 3a, D-39114 Magdeburg, Germany
| | - Valerie Wentzky
- Department Lake Research, UFZ - Helmholtz Centre for Environmental Research, Brückstraße 3a, D-39114 Magdeburg, Germany
| | - Norbert Kamjunke
- Department River Ecology, UFZ - Helmholtz Centre for Environmental Research, Brückstraße 3a, D-39114 Magdeburg, Germany
| | - Wolf von Tümpling
- Department River Ecology, UFZ - Helmholtz Centre for Environmental Research, Brückstraße 3a, D-39114 Magdeburg, Germany
| | - Christin Wilske
- Department River Ecology, UFZ - Helmholtz Centre for Environmental Research, Brückstraße 3a, D-39114 Magdeburg, Germany
| | - Kurt Friese
- Department Lake Research, UFZ - Helmholtz Centre for Environmental Research, Brückstraße 3a, D-39114 Magdeburg, Germany
| | - Bertram Boehrer
- Department Lake Research, UFZ - Helmholtz Centre for Environmental Research, Brückstraße 3a, D-39114 Magdeburg, Germany
| | - Thorsten Reemtsma
- Department Analytical Chemistry, UFZ - Helmholtz Centre for Environmental Research, Permoserstr. 15, D-04318 Leipzig, Germany
- Institute of Analytical Chemistry, University of Leipzig, D-04103, Leipzig, Germany
| | - Karsten Rinke
- Department Lake Research, UFZ - Helmholtz Centre for Environmental Research, Brückstraße 3a, D-39114 Magdeburg, Germany
| | - Oliver J Lechtenfeld
- Department Analytical Chemistry, UFZ - Helmholtz Centre for Environmental Research, Permoserstr. 15, D-04318 Leipzig, Germany
- ProVIS - Centre for Chemical Microscopy, UFZ - Helmholtz Centre for Environmental Research, Permoserstr. 15, D-04318 Leipzig, Germany
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Inverse or direct detect experiments and probes: Which are “best” for in-vivo NMR research of 13C enriched organisms? Anal Chim Acta 2020; 1138:168-180. [DOI: 10.1016/j.aca.2020.09.065] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Revised: 09/11/2020] [Accepted: 09/30/2020] [Indexed: 01/09/2023]
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Zherebker AY, Rukhovich GD, Kharybin ON, Fedoros EI, Perminova IV, Nikolaev EN. Fourier transform ion cyclotron resonance mass spectrometry for the analysis of molecular composition and batch-to-batch consistency of plant-derived polyphenolic ligands developed for biomedical application. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2020; 34:e8850. [PMID: 32492216 DOI: 10.1002/rcm.8850] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 05/26/2020] [Accepted: 06/01/2020] [Indexed: 06/11/2023]
Abstract
UNLABELLED Complex plant-derived polyphenols are promising for biomedical application. Their high complexity prevents the use of conventional pharmacopoeia techniques to perform quality control. The goal of this study was to apply ultra-high-resolution mass spectrometry to evaluate the batch-to-batch consistency of the molecular composition of a polyphenolic ligand using appropriate statistical metrics. METHODS Polyphenols were obtained by hydrolyzed-lignin oxidation. Manufacturing was performed under a range of reaction conditions: heating cycles, oxygen flows, purification. Direct-injection Fourier transform ion cyclotron resonance mass spectrometry (DI FTICR-MS) was applied to analyze reaction products. For pairwise comparison Jaccard and Tanimoto similarities calculations were proposed. In addition, principal component analysis (PCA) was applied for sample grouping based on the molecular class contributions. RESULTS FTICR-MS analysis revealed moderate Jaccard similarity of products synthesized under the same conditions, which shared about 50% of the formulae calculated in each sample. The intensity-based Tanimoto index indicated high similarity of major components distribution of samples synthesized under standard conditions, while products obtained with variations in synthetic conditions were significantly different. PCA of molecular class contributions showed similar grouping with a high cumulative score. CONCLUSIONS FTICR-MS provides robust metrics for the examination of batch-to-batch consistency of synthetic polyphenol materials. This approach can be proposed for the analysis of reference samples and for development of complementary methods for quality control of medicinal agents based on various biologically active matrices.
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Affiliation(s)
- Alexander Ya Zherebker
- Skolkovo Institute of Science and Technology, Skolkovo, Moscow region, 143025, Russia
- Department of Chemistry, Lomonosov Moscow State University, Moscow, Russia
| | - Gleb D Rukhovich
- Department of Chemistry, Lomonosov Moscow State University, Moscow, Russia
| | - Oleg N Kharybin
- Skolkovo Institute of Science and Technology, Skolkovo, Moscow region, 143025, Russia
| | - Elena I Fedoros
- N.N. Petrov National Medical Research Center of Oncology, Saint-Petersburg, 197758, Russia
- Nobel LTD, Saint-Petersburg, 192012, Russia
| | - Irina V Perminova
- Department of Chemistry, Lomonosov Moscow State University, Moscow, Russia
| | - Evgeny N Nikolaev
- Skolkovo Institute of Science and Technology, Skolkovo, Moscow region, 143025, Russia
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Kurek M, Harir M, Shukle J, Schroth A, Schmitt-Kopplin P, Druschel G. Chemical fractionation of organic matter and organic phosphorus extractions from freshwater lake sediment. Anal Chim Acta 2020; 1130:29-38. [DOI: 10.1016/j.aca.2020.07.013] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Accepted: 07/06/2020] [Indexed: 11/28/2022]
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45
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Zherebker A, Yakimov B, Rubekina A, Kharybin O, Fedoros EI, Perminova IV, Shirshin E, Nikolaev EN. Photoreactivity of humic-like polyphenol material under irradiation with different wavelengths explored by FTICR MS and deuteromethylation. EUROPEAN JOURNAL OF MASS SPECTROMETRY (CHICHESTER, ENGLAND) 2020; 26:292-300. [PMID: 32264711 DOI: 10.1177/1469066720917067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The goal of this study was to establish reactivity of lignin-derived synthetic polyphenolic material under irradiation by ultraviolet (254 nm) and visible (460 and 525 nm) light in order to deeper examine relationships between the optical properties of this complex mixture and its individual constituents. In all photoirradiation experiments, blue shift of the fluorescence spectrum was observed. We aimed at understanding whether these changes could be explained on the basis of the chromophore interactions hypothesis, which implies destruction of electron-acceptor pairs via free radical transformations to be responsible for the alteration of optical properties. For this, changes in molecular composition were explored by Fourier transform ion cyclotron resonance mass spectrometry. Irradiation with UV resulted in a pronounced oxidation of polyphenols, which was manifested in the van Krevelen diagram by the formation of components with higher O/C ratio. At the same time, irradiation by visible light had led to the appearance of more condensed molecules depleted of oxygen. Consideration of changes in relative contribution of 500 most abundant components in polyphenol materials revealed higher transformation yields under UV light as compared to the visible light. Further studies using deuteromethylation followed by Fourier transform ion cyclotron resonance mass spectrometry enabled to enumerate the number of carboxylic groups in individual components of the parent polyphenol material. It was shown that at all wavelengths irradiation mainly impacted carboxylic-rich unsaturated and aromatic compounds, which can be considered as strong electron-acceptors. We suggest that their transformation is responsible for the blue shift of fluorescence spectrum, thus emphasizing the role of chromophore interaction mechanism of the optical properties formation.
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Affiliation(s)
- Alexander Zherebker
- Skolkovo Institute of Science and Technology, Moscow, Russia
- Department of Chemistry, Lomonosov Moscow State University, Moscow, Russia
| | - Boris Yakimov
- Department of Physics, Lomonosov Moscow State University, Moscow, Russia
| | - Anna Rubekina
- Department of Physics, Lomonosov Moscow State University, Moscow, Russia
| | - Oleg Kharybin
- Skolkovo Institute of Science and Technology, Moscow, Russia
| | - Elena I Fedoros
- N.N. Petrov National Medical Research Center of Oncology, Saint-Petersburg, Russia
- Nobel LTD, Saint-Petersburg, Russia
| | - I V Perminova
- Department of Chemistry, Lomonosov Moscow State University, Moscow, Russia
| | - Evgeny Shirshin
- Department of Physics, Lomonosov Moscow State University, Moscow, Russia
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46
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Yuan B, Lysak DH, Soong R, Haddad A, Hisatsune A, Moser A, Golotvin S, Argyropoulos D, Simpson AJ, Muir DCG. Chlorines Are Not Evenly Substituted in Chlorinated Paraffins: A Predicted NMR Pattern Matching Framework for Isomeric Discrimination in Complex Contaminant Mixtures. ENVIRONMENTAL SCIENCE & TECHNOLOGY LETTERS 2020; 7:496-503. [PMID: 32685603 PMCID: PMC7365351 DOI: 10.1021/acs.estlett.0c00244] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 04/30/2020] [Accepted: 04/30/2020] [Indexed: 05/06/2023]
Abstract
Chlorinated paraffins (CPs) can be mixtures of nearly a half-million possible isomers. Despite the extensive use of CPs, their isomer composition and effects on the environment remain poorly understood. Here, we reveal the isomeric distributions of nine CP mixtures with single-chain lengths (C14/15) and varying degrees of chlorination. The molar distribution of C n H2n+2-m Cl m in each mixture was determined using high-resolution mass spectrometry (MS). Next, the mixtures were analyzed by applying both one-dimensional 1H, 13C and two-dimensional nuclear magnetic resonance (NMR) spectroscopy. Due to substantially overlapping signals in the experimental NMR spectra, direct assignment of individual isomers was not possible. As such, a new NMR spectral matching approach that used massive NMR databases predicted by a neural network algorithm to provide the top 100 most likely structural matches was developed. The top 100 isomers appear to be an adequate representation of the overall mixture. Their modeled physicochemical and toxicity parameters agree with previous experimental results. Chlorines are not evenly distributed in any of the CP mixtures and show a general preference at the third carbon. The approach described here can play a key role in understanding of complex isomeric mixtures such as CPs that cannot be resolved by MS alone.
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Affiliation(s)
- Bo Yuan
- Department
of Environmental Science, Stockholm University, SE-10691 Stockholm, Sweden
| | - Daniel Henryk Lysak
- Environmental
NMR Centre, University of Toronto, Toronto, ON, Canada M1C 1A4
| | - Ronald Soong
- Environmental
NMR Centre, University of Toronto, Toronto, ON, Canada M1C 1A4
| | - Andrew Haddad
- Environmental
NMR Centre, University of Toronto, Toronto, ON, Canada M1C 1A4
| | - Arika Hisatsune
- Environmental
NMR Centre, University of Toronto, Toronto, ON, Canada M1C 1A4
| | - Arvin Moser
- ACD/Labs, 8 King Street East, Toronto, ON, Canada M5C 1B5
| | | | | | - Andre J. Simpson
- Environmental
NMR Centre, University of Toronto, Toronto, ON, Canada M1C 1A4
| | - Derek C. G. Muir
- Canada
Centre for Inland Waters, Environment and
Climate Change Canada, Burlington, ON, Canada L7S 1A1
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47
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Zherebker A, Lechtenfeld OJ, Sarycheva A, Kostyukevich Y, Kharybin O, Fedoros EI, Nikolaev EN. Refinement of Compound Aromaticity in Complex Organic Mixtures by Stable Isotope Label Assisted Ultrahigh-Resolution Mass Spectrometry. Anal Chem 2020; 92:9032-9038. [PMID: 32484343 DOI: 10.1021/acs.analchem.0c01208] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS) provides a unique opportunity for molecular analysis of natural complex mixtures. In many geochemical and environmental studies structure-propertry relations are based solely on the elemental compositional information. Several calculated parameters were proposed to increase reliability of structural attribution, among which aromaticity indices (AI and AImod) are widely used. Herein, we applied a combination of selective labeling reactions in order to obtain direct structural information on the individual components of lignin-derived polyphenolic material. Carboxylic (COOH), carbonyl (C═O), and hydroxyl (OH) groups were enumerated by esterification, reducing, and acetylation reactions, respectively, followed by FTICR MS analyses. Obtained information was enabled to constrain aromaticity accounting for the carbon skeleton only. We found that actual aromaticity of components may be both higher or lower than approximated values depending on the abundance of COOH, C═O, and OH groups. The results are of importance for the geochemical community studying terrestrial NOM with structural gradients.
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Affiliation(s)
- Alexander Zherebker
- Skolkovo Institute of Science and Technology, Skolkovo 143025, Moscow, Russia
| | - Oliver J Lechtenfeld
- Department of Analytical Chemistry, Helmholtz Centre for Environmental Research - UFZ, Leipzig DE-04318, Germany
| | - Anastasia Sarycheva
- Skolkovo Institute of Science and Technology, Skolkovo 143025, Moscow, Russia
| | - Yury Kostyukevich
- Skolkovo Institute of Science and Technology, Skolkovo 143025, Moscow, Russia
| | - Oleg Kharybin
- Skolkovo Institute of Science and Technology, Skolkovo 143025, Moscow, Russia
| | - Elena I Fedoros
- N.N. Petrov National Medical Research Center of Oncology, Saint-Petersburg 197758, Russia.,Nobel LTD, Saint-Petersburg 192012, Russia
| | - Evgeny N Nikolaev
- Skolkovo Institute of Science and Technology, Skolkovo 143025, Moscow, Russia
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Ghosh Biswas R, Fortier-McGill B, Akhter M, Soong R, Ning P, Bastawrous M, Jenne A, Schmidig D, De Castro P, Graf S, Kuehn T, Busse F, Struppe J, Fey M, Heumann H, Boenisch H, Gundy M, Simpson MJ, Simpson AJ. Ex vivo Comprehensive Multiphase NMR of whole organisms: A complementary tool to in vivo NMR. Anal Chim Acta X 2020; 6:100051. [PMID: 33392494 PMCID: PMC7772632 DOI: 10.1016/j.acax.2020.100051] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Revised: 05/29/2020] [Accepted: 06/23/2020] [Indexed: 12/15/2022] Open
Abstract
Nuclear Magnetic Resonance (NMR) spectroscopy is a non-invasive analytical technique which allows for the study of intact samples. Comprehensive Multiphase NMR (CMP-NMR) combines techniques and hardware from solution state and solid state NMR to allow for the holistic analysis of all phases (i.e. solutions, gels and solids) in unaltered samples. This study is the first to apply CMP-NMR to deceased, intact organisms and uses 13C enriched Daphnia magna (water fleas) as an example. D. magna are commonly used model organisms for environmental toxicology studies. As primary consumers, they are responsible for the transfer of nutrients across trophic levels, and a decline in their population can potentially impact the entire freshwater aquatic ecosystem. Though in vivo research is the ultimate tool to understand an organism’s most biologically relevant state, studies are limited by conditions (i.e. oxygen requirements, limited experiment time and reduced spinning speed) required to keep the organisms alive, which can negatively impact the quality of the data collected. In comparison, ex vivo CMP-NMR is beneficial in that; organisms do not need oxygen (eliminating air holes in rotor caps and subsequent evaporation); samples can be spun faster, leading to improved spectral resolution; more biomass per sample can be analyzed; and experiments can be run for longer. In turn, higher quality ex vivo NMR, can provide more comprehensive NMR assignments, which in many cases could be transferred to better understand less resolved in vivo signals. This manuscript is divided into three sections: 1) multiphase spectral editing techniques, 2) detailed metabolic assignments of 2D NMR of 13C enriched D. magna and 3) multiphase biological changes over different life stages, ages and generations of D. magna. In summary, ex vivo CMP-NMR proves to be a very powerful approach to study whole organisms in a comprehensive manner and should provide very complementary information to in vivo based research. Comprehensive Multiphase NMR detects all phases (solid/liquid/gel) in whole samples. Deceased organisms are not subjected to the limitations of in vivo NMR studies. 2D ex vivo NMR offer increased spectral resolution, improving metabolite assignment. Holistic analysis shows biological changes in D. magna over different life stages. Ex vivo NMR can be a complementary tool for in vivo NMR metabolomic studies.
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Affiliation(s)
- Rajshree Ghosh Biswas
- University of Toronto Scarborough, Department of Physical & Environmental Sciences, 1265, Military Trail, M1C 1A4, ON, Canada
| | - Blythe Fortier-McGill
- University of Toronto Scarborough, Department of Physical & Environmental Sciences, 1265, Military Trail, M1C 1A4, ON, Canada
| | - Mohammad Akhter
- University of Toronto Scarborough, Department of Physical & Environmental Sciences, 1265, Military Trail, M1C 1A4, ON, Canada
| | - Ronald Soong
- University of Toronto Scarborough, Department of Physical & Environmental Sciences, 1265, Military Trail, M1C 1A4, ON, Canada
| | - Paris Ning
- University of Toronto Scarborough, Department of Physical & Environmental Sciences, 1265, Military Trail, M1C 1A4, ON, Canada
| | - Monica Bastawrous
- University of Toronto Scarborough, Department of Physical & Environmental Sciences, 1265, Military Trail, M1C 1A4, ON, Canada
| | - Amy Jenne
- University of Toronto Scarborough, Department of Physical & Environmental Sciences, 1265, Military Trail, M1C 1A4, ON, Canada
| | - Daniel Schmidig
- Bruker Switzerland AG, Industriestrasse 26, 8117, Fällanden, Switzerland
| | - Peter De Castro
- Bruker Switzerland AG, Industriestrasse 26, 8117, Fällanden, Switzerland
| | - Stephan Graf
- Bruker Switzerland AG, Industriestrasse 26, 8117, Fällanden, Switzerland
| | - Till Kuehn
- Bruker Switzerland AG, Industriestrasse 26, 8117, Fällanden, Switzerland
| | - Falko Busse
- Bruker Biospin GmbH, Silberstreifen 4, 76287, Rheinstetten, Germany
| | - Jochem Struppe
- Bruker Corporation, 15 Fortune Drive, Billerica, MA, 01821-3991, USA
| | - Michael Fey
- Bruker Corporation, 15 Fortune Drive, Billerica, MA, 01821-3991, USA
| | - Hermann Heumann
- Silantes GmbH, Gollierstrasse 70c, D-80339, München, Germany
| | - Holger Boenisch
- Silantes GmbH, Gollierstrasse 70c, D-80339, München, Germany
| | - Marcel Gundy
- Silantes GmbH, Gollierstrasse 70c, D-80339, München, Germany
| | - Myrna J Simpson
- University of Toronto Scarborough, Department of Physical & Environmental Sciences, 1265, Military Trail, M1C 1A4, ON, Canada
| | - André J Simpson
- University of Toronto Scarborough, Department of Physical & Environmental Sciences, 1265, Military Trail, M1C 1A4, ON, Canada
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Liaghati Mobarhan Y, Soong R, Lane D, Simpson AJ. In vivo comprehensive multiphase NMR. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2020; 58:427-444. [PMID: 32239574 DOI: 10.1002/mrc.4832] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2018] [Revised: 12/20/2018] [Accepted: 01/03/2019] [Indexed: 06/11/2023]
Abstract
Traditionally, due to different hardware requirements, nuclear magnetic resonance (NMR) has developed as two separate fields: one dealing with solids, and one with solutions. Comprehensive multiphase (CMP) NMR combines all electronics and hardware (magic angle spinning [MAS], gradients, high power Radio Frequency (RF) handling, lock, susceptibility matching) into a universal probe that permits a comprehensive study of all phases (i.e., liquid, gel-like, semisolid, and solid), in intact samples. When applied in vivo, it provides unique insight into the wide array of bonds in a living system from the most mobile liquids (blood, fluids) through gels (muscle, tissues) to the most rigid (exoskeleton, shell). In this tutorial, the practical aspects of in vivo CMP NMR are discussed including: handling the organisms, rotor preparation, sample spinning, water suppression, editing experiments, and finishes with a brief look at the potential of other heteronuclei (2 H, 15 N, 19 F, 31 P) for in vivo research. The tutorial is aimed as a general resource for researchers interested in developing and applying MAS-based approaches to living organisms. Although the focus here is CMP NMR, many of the approaches can be adapted (or directly applied) using conventional high-resolution magic angle spinning, and in some cases, even standard solid-state NMR probes.
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Affiliation(s)
- Yalda Liaghati Mobarhan
- Environmental NMR Center, Department of Physical and Environmental Sciences, University of Toronto, Toronto, Ontario, Canada
| | - Ronald Soong
- Environmental NMR Center, Department of Physical and Environmental Sciences, University of Toronto, Toronto, Ontario, Canada
| | - Daniel Lane
- Environmental NMR Center, Department of Physical and Environmental Sciences, University of Toronto, Toronto, Ontario, Canada
| | - Andre J Simpson
- Environmental NMR Center, Department of Physical and Environmental Sciences, University of Toronto, Toronto, Ontario, Canada
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50
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Zherebker A, Shirshin E, Rubekina A, Kharybin O, Kononikhin A, Kulikova NA, Zaitsev KV, Roznyatovsky VA, Grishin YK, Perminova IV, Nikolaev EN. Optical Properties of Soil Dissolved Organic Matter Are Related to Acidic Functions of Its Components as Revealed by Fractionation, Selective Deuteromethylation, and Ultrahigh Resolution Mass Spectrometry. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:2667-2677. [PMID: 32045519 DOI: 10.1021/acs.est.9b05298] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
The goal of this study was to establish a relationship between the optical properties of soil dissolved organic matter (DOM) and acidic functions carried out by its individual constituents. We obtained 12 fractions of DOM samples using sequential solid phase extraction on nonionic sorbent at steadily lowered pH values: 7, 5, 3, 2, which correspond to low bounds of pKa values of phenols, aliphatic, and aromatic carboxylic acids, and ketoacids. The structural studies were conducted with the use of NMR and selective deuteromethylation of isolated fractions coupled to ultrahigh resolution mass spectrometry. First, a gradual shift of molecular compositions was observed from reduced components to aromatic oxidized compounds isolated at pH 7 and 2, respectively. Changes in molecular compositions were accompanied by a red shift of fluorescence spectra. Further application of deuteromethylation enabled us to distinguish DOM constituents with different amounts of carboxylic groups. Moreover, identification of structural isomers in a single DOM sample was achieved. Statistical analysis revealed that red shift of fluorescence is facilitated by the increase of a contribution of aromatic poly(carboxylic acid)s with high conjugation lengths. Additionally, analysis of the labeled fractionated permafrost thaw DOM directly showed carboxyl-rich alicyclic molecules, while the same components from lower-latitude DOM were assigned to lignin-like species.
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Affiliation(s)
- Alexander Zherebker
- Skolkovo Institute of Science and Technology, Skolkovo, Moscow Region 143025, Russia
- Department of Chemistry, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Evgeny Shirshin
- Department of Physics, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Anna Rubekina
- Department of Physics, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Oleg Kharybin
- Skolkovo Institute of Science and Technology, Skolkovo, Moscow Region 143025, Russia
| | - Alexey Kononikhin
- Skolkovo Institute of Science and Technology, Skolkovo, Moscow Region 143025, Russia
| | - Natalia A Kulikova
- Department of Soil Science, Lomonosov Moscow State University, Moscow, 119991, Russia
- Federal Research Center "Fundamentals of Biotechnology", Bakh Institute of Biochemistry, Russian Academy of Sciences, Moscow, 119071, Russia
| | - Kirill V Zaitsev
- Department of Chemistry, Lomonosov Moscow State University, Moscow, 119991, Russia
| | | | - Yuri K Grishin
- Department of Chemistry, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Irina V Perminova
- Department of Chemistry, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Evgeny N Nikolaev
- Skolkovo Institute of Science and Technology, Skolkovo, Moscow Region 143025, Russia
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