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Raina J, Kaur G, Singh I. Recent progress in nanomaterial-based aptamers as biosensors for point of care detection of Hg 2+ ions and its environmental applications. Talanta 2024; 277:126372. [PMID: 38865954 DOI: 10.1016/j.talanta.2024.126372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Revised: 05/29/2024] [Accepted: 06/05/2024] [Indexed: 06/14/2024]
Abstract
Among the foremost persistent heavy metal ions in the ecosystem, mercury (Hg2+) remains intimidating to the environment by producing a catastrophic effect on the environment as well as on mankind due to the exacerbation of anthropogenic activities. Therefore, it has become necessary to develop superlative techniques for its detection even at low concentrations. The conventional approaches for Hg2+ ions are quite laborious, and expensive, and require expertise in operating sophisticated instruments. To overcome these limitations, aptamer-based biosensors emerged as a promising tool for its detection. DNA-based aptamers have evolved as a significant technique by detecting them even in ppb levels. This review outlines the progress in aptamer-based biosensors from the year 2019-2023 by inducing changes in the electrochemical signal or by fluorescent/colorimetric approaches. The electrochemical sensors used nanomaterial electrodes for increasing the sensitivity whereas fluorescent and colorimetric sensors exhibit quenching or strong fluorescence in the presence of Hg2+ ions depending upon the prevailing mechanism or visible color changes. This perturbation in the signals could be attributed to the formation of the T-Hg2+ -T complex with the aptamers in the presence of ions revealing its real-time and biological applications in living or cancerous cells. Furthermore, next-generation biosensors are suggested to bring a paradigm shift to the integration of high-end smartphones, machine learning, artificial intelligence, etc.
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Affiliation(s)
- Jeevika Raina
- School of Pharmaceutical Sciences, Lovely Professional University, Phagwara, India, 144411
| | - Gurdeep Kaur
- School of Chemical Engineering and Physical Sciences, Lovely Professional University, Phagwara, India, 144411
| | - Iqubal Singh
- School of Pharmaceutical Sciences, Lovely Professional University, Phagwara, India, 144411.
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2
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Halmagyi TG, Alsharif NB, Berkal MA, Hempenius MA, Szilagyi I, Vancso GJ, Nardin C. Aptamer Clicked Poly(ferrocenylsilanes) at Au Nanoparticles as Platforms with Multiple Function [†]. Chemistry 2024; 30:e202303979. [PMID: 38206093 DOI: 10.1002/chem.202303979] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 01/10/2024] [Accepted: 01/10/2024] [Indexed: 01/12/2024]
Abstract
Aptamers are widely used in biosensing due to their specific sensitivity toward many targets. Thus, gold nanoparticle (AuNP) aptasensors are subject to intense research due to the complementary properties of aptamers as sensing elements and AuNPs as transducers. We present herein a novel method for the functional coupling of thrombin-specific aptamers to AuNPs via an anionic, redox-active poly(ferrocenylsilane) (PFS) polyelectroyte. The polymer acts as a co-reductant and stabilizer for the AuNPs, provides grafting sites for the aptamer, and can be used as a redox sensing element, making the aptamer-PFS-AuNP composite (aptamer-AuNP) a promising model system for future multifunctional sensors. The aptamer-AuNPs exhibit excellent colloidal stability in high ionic strength environments owing to the combined electrosteric stabilizing effects of the aptamer and the PFS. The synthesis of each assembly element is described, and the colloidal stability and redox responsiveness are studied. As an example to illustrate applications, we present results for thrombin sensitivity and specificity using the specific aptamer.
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Affiliation(s)
- Tibor G Halmagyi
- E2S UPPA, CNRS, IPREM, Universite de Pau et des Pays de l'Adour F-, 64053, Pau, France
| | - Nizar B Alsharif
- MTA-SZTE Momentum Biocolloids Research Group, Department of Physical Chemistry and Materials Science, Interdisciplinary Research Center, University of Szeged H-, 6720, Szeged, Hungary
| | - Mohamed A Berkal
- E2S UPPA, CNRS, IPREM, Universite de Pau et des Pays de l'Adour F-, 64053, Pau, France
| | - Mark A Hempenius
- Sustainable Polymer Chemistry, University of Twente NL-, 7522NB, Enschede, the Netherlands
| | - Istvan Szilagyi
- MTA-SZTE Momentum Biocolloids Research Group, Department of Physical Chemistry and Materials Science, Interdisciplinary Research Center, University of Szeged H-, 6720, Szeged, Hungary
| | - G Julius Vancso
- Sustainable Polymer Chemistry, University of Twente NL-, 7522NB, Enschede, the Netherlands
| | - Corinne Nardin
- E2S UPPA, CNRS, IPREM, Universite de Pau et des Pays de l'Adour F-, 64053, Pau, France
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Ghosh S, Yang CJ, Lai JY. Optically active two-dimensional MoS 2-based nanohybrids for various biosensing applications: A comprehensive review. Biosens Bioelectron 2024; 246:115861. [PMID: 38029711 DOI: 10.1016/j.bios.2023.115861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Revised: 11/10/2023] [Accepted: 11/16/2023] [Indexed: 12/01/2023]
Abstract
Following the discovery of graphene, there has been a surge in exploring other two-dimensional (2D) nanocrystals, including MoS2. Over the past few decades, MoS2-based nanocrystals have shown great potential applications in biosensing, owing to their excellent physico-chemical properties. Unlike graphene, MoS2 shows layer-dependent finite band gaps (∼1.8 eV for a single layer and ∼1.2 for bulk) and relatively strong interaction with the electromagnetic spectrum. The tunability of the size, shape, and intrinsic properties, such as high optical absorption, electron mobility, mechanical strength and large surface area, of MoS2 nanocrystals, make them excellent alternative probe materials for preparing optical, photothermal, and electrical bio/immunosensors. In this review, we will provide insights into the rapid evolutions in bio/immunosensing applications based on MoS2 and its nanohybrids. We emphasized the various synthesis, characterization, and functionalization routes of 2D MoS2 nanosheets/nanoflakes. Finally, we discussed various fabrication techniques and the critical parameters, including the limit of detection (LOD), linear detection range, and sensitivity of the biosensors. In addition, the role of MoS2 in enhancing the performance of biosensors, the limitations associated with current biosensing technologies, future challenges, and clinical implications are addressed. The advantages/disadvantages of each biosensor technique are also summarized. Collectively, we believe that this review will encourage resolute researchers to follow up further with the state-of-the-art MoS2-based biosensing technology.
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Affiliation(s)
- Sandip Ghosh
- Department of Biomedical Engineering, Chang Gung University, Taoyuan, 33302, Taiwan
| | - Chia-Jung Yang
- Department of Biomedical Engineering, Chang Gung University, Taoyuan, 33302, Taiwan
| | - Jui-Yang Lai
- Department of Biomedical Engineering, Chang Gung University, Taoyuan, 33302, Taiwan; Department of Ophthalmology, Chang Gung Memorial Hospital, Linkou, Taoyuan, 33305, Taiwan; Department of Materials Engineering, Ming Chi University of Technology, New Taipei City, 24301, Taiwan; Research Center for Chinese Herbal Medicine, College of Human Ecology, Chang Gung University of Science and Technology, Taoyuan, 33303, Taiwan.
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4
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Patil SS, Narwade VN, Sontakke KS, Hianik T, Shirsat MD. Layer-by-Layer Immobilization of DNA Aptamers on Ag-Incorporated Co-Succinate Metal-Organic Framework for Hg(II) Detection. SENSORS (BASEL, SWITZERLAND) 2024; 24:346. [PMID: 38257438 PMCID: PMC10818963 DOI: 10.3390/s24020346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 01/02/2024] [Accepted: 01/03/2024] [Indexed: 01/24/2024]
Abstract
Layer-by-layer (LbL) immobilization of DNA aptamers in the realm of electrochemical detection of heavy metal ions (HMIs) offers an enhancement in specificity, sensitivity, and low detection limits by leveraging the cross-reactivity obtained from multiple interactions between immobilized aptamers and developed material surfaces. In this research, we present a LbL approach for the immobilization of thiol- and amino-modified DNA aptamers on a Ag-incorporated cobalt-succinate metal-organic framework (MOF) (Ag@Co-Succinate) to achieve a cross-reactive effect on the electrochemical behavior of the sensor. The solvothermal method was utilized to synthesize Ag@Co-Succinate, which was also characterized through various techniques to elucidate its structure, morphology, and presence of functional groups, confirming its suitability as a host matrix for immobilizing both aptamers. The Ag@Co-Succinate aptasensor exhibited extraordinary sensitivity and selectivity towards Hg(II) ions in electrochemical detection, attributed to the unique binding properties of the immobilized aptamers. The exceptional limit of detection of 0.3 nM ensures the sensor's suitability for trace-level Hg(II) detection in various environmental and analytical applications. Furthermore, the developed sensor demonstrated outstanding repeatability, highlighting its potential for long-term and reliable monitoring of Hg(II).
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Affiliation(s)
- Shubham S. Patil
- RUSA-Centre for Advanced Sensor Technology, Department of Physics, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad 431004, India; (S.S.P.); (V.N.N.)
- Department of Nuclear Physics and Biophysics, Faculty of Mathematics, Physics and Informatics, Comenius University, 842 48 Bratislava, Slovakia;
| | - Vijaykiran N. Narwade
- RUSA-Centre for Advanced Sensor Technology, Department of Physics, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad 431004, India; (S.S.P.); (V.N.N.)
| | - Kiran S. Sontakke
- Department of Nuclear Physics and Biophysics, Faculty of Mathematics, Physics and Informatics, Comenius University, 842 48 Bratislava, Slovakia;
| | - Tibor Hianik
- Department of Nuclear Physics and Biophysics, Faculty of Mathematics, Physics and Informatics, Comenius University, 842 48 Bratislava, Slovakia;
| | - Mahendra D. Shirsat
- RUSA-Centre for Advanced Sensor Technology, Department of Physics, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad 431004, India; (S.S.P.); (V.N.N.)
- Department of Nuclear Physics and Biophysics, Faculty of Mathematics, Physics and Informatics, Comenius University, 842 48 Bratislava, Slovakia;
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Wang B, Liu Z, Li Z, Xu N, Zhang X, Su R, Wang J, Jin R, Sun C. Facile and sensitive detection of mercury ions based on fluorescent structure-switching aptamer probe and exonuclease Ⅲ-assisted signal amplification. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 303:123223. [PMID: 37562208 DOI: 10.1016/j.saa.2023.123223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 07/24/2023] [Accepted: 07/31/2023] [Indexed: 08/12/2023]
Abstract
Hg2+ is highly toxic to human health and ecosystem. In this work, based on the unique fluorescent property of 2-Aminopurine (2-AP), the formation of T-Hg2+-T mismatch structure and the signal amplification of exonuclease III (Exo III) assisted target cycle, a fluorescent probe for facile and sensitive detection of Hg2+ is constructed. The hairpin-looped DNA probe is rationally designed with 2-AP embedded in the stem and thymine-rich recognition overhangs extended at the termini. The cleavage of the double stranded DNA stem with stable T-Hg2+-T pairs catalyzed by Exo III is prompted to happen upon recognition of trace Hg2+. Under the optimal reaction conditions, there is an excellent linear relationship between Hg2+ concentration and fluorescence intensity in the range of 7.5-200 nM with a detection limit of 0.38 nM. In addition, the detection results of Hg2+ in Songhua River water and fish samples are satisfactory. The fluorescent probe avoids labeling additional quenchers or quenching materials and has strong anti-interference ability. Thus, the fluorescent probe has a broad prospect in practical application.
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Affiliation(s)
- Boxu Wang
- Department of Food Quality and Safety, College of Food Science and Engineering, Jilin University, Changchun 130062, China
| | - Zheng Liu
- Department of Food Quality and Safety, College of Food Science and Engineering, Jilin University, Changchun 130062, China
| | - Zhihong Li
- Department of Food Quality and Safety, College of Food Science and Engineering, Jilin University, Changchun 130062, China
| | - Ningyi Xu
- Department of Food Quality and Safety, College of Food Science and Engineering, Jilin University, Changchun 130062, China
| | - Xuejiao Zhang
- Changchun Coordinated Administrative Law Enforcement Detachment of Market Regulation, Changchun 130102, China
| | - Ruifang Su
- Department of Food Quality and Safety, College of Food Science and Engineering, Jilin University, Changchun 130062, China
| | - Junyang Wang
- Department of Food Quality and Safety, College of Food Science and Engineering, Jilin University, Changchun 130062, China
| | - Rui Jin
- Department of Food Quality and Safety, College of Food Science and Engineering, Jilin University, Changchun 130062, China.
| | - Chunyan Sun
- Department of Food Quality and Safety, College of Food Science and Engineering, Jilin University, Changchun 130062, China.
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Zhu J, Wang D, Yu H, Yin H, Wang L, Shen G, Geng X, Yang L, Fei Y, Deng Y. Advances in colorimetric aptasensors for heavy metal ion detection utilizing nanomaterials: a comprehensive review. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2023; 15:6320-6343. [PMID: 37965993 DOI: 10.1039/d3ay01815f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2023]
Abstract
Heavy metal ion contamination poses significant environmental and health risks, necessitating rapid and efficient detection methods. In the last decade, colorimetric aptasensors have emerged as powerful tools for heavy metal ion detection, owing to their notable attributes such as high specificity, facile synthesis, adaptability to modifications, long-term stability, and heightened sensitivity. This comprehensive overview summarizes the key developments in this field over the past ten years. It discusses the principles, design strategies, and innovative techniques employed in colorimetric aptasensors using nanomaterials. Recent advancements in enhancing sensitivity, selectivity, and on-site applicability are highlighted. The review also presents application studies of successful heavy metal ion detection using colorimetric aptasensors, underlining their potential for environmental monitoring and health protection. Finally, future directions and challenges in the continued evolution of these aptasensors are outlined.
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Affiliation(s)
- Jiangxiong Zhu
- Department of Food Science & Technology, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai 200240, China.
- Yunnan Dali Research Institute of Shanghai Jiao Tong University, Yunnan 671000, China
| | - Danfeng Wang
- Department of Food Science & Technology, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai 200240, China.
| | - Hong Yu
- Department of Food Science & Technology, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai 200240, China.
- Yunnan Dali Research Institute of Shanghai Jiao Tong University, Yunnan 671000, China
| | - Hao Yin
- Department of Food Science & Technology, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai 200240, China.
- Yunnan Dali Research Institute of Shanghai Jiao Tong University, Yunnan 671000, China
| | - Lumei Wang
- Department of Food Science & Technology, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai 200240, China.
- Yunnan Dali Research Institute of Shanghai Jiao Tong University, Yunnan 671000, China
| | - Guoqing Shen
- Department of Food Science & Technology, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai 200240, China.
- Yunnan Dali Research Institute of Shanghai Jiao Tong University, Yunnan 671000, China
| | - Xueqing Geng
- Department of Food Science & Technology, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai 200240, China.
- Yunnan Dali Research Institute of Shanghai Jiao Tong University, Yunnan 671000, China
| | - Linnan Yang
- School of Big Data, Yunnan Agricultural University, Kunming 650201, China
| | - Yongcheng Fei
- Eryuan County Inspection and Testing Institute, Yunnan 671299, China
| | - Yun Deng
- Department of Food Science & Technology, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai 200240, China.
- Yunnan Dali Research Institute of Shanghai Jiao Tong University, Yunnan 671000, China
- Eryuan County Inspection and Testing Institute, Yunnan 671299, China
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Sun H, Yang C, Wang H. Highly sensitive surface acoustic wave biosensor for the detection of Hg 2+ based on the thymine-Hg 2+-thymine structure. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2023; 15:4728-4735. [PMID: 37691569 DOI: 10.1039/d3ay01188g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/12/2023]
Abstract
The detection of mercury ions (Hg2+) with an ultralow concentration is of great significance for the treatment of heavy metal pollution in industrial waste water and the monitoring of drinking water quality. In this study, a simple, sensitive, and portable surface acoustic wave (SAW) biosensor for the determination of Hg2+ concentration was developed. First, a DNA fragment with a specific binding capacity for Hg2+ was chemically adsorbed on to the sensitive region through forming Au-S bonds with the SAW biosensor. The DNA probe could then form a thymine-Hg2+-thymine (T-Hg2+-T) complex with strong affinity for Hg2+ after immersion in a test solution containing Hg2+, resulting in a significant change in the response frequency of the device. The linear detection range of the device was 10 pM to 1 nM, while the limit of detection (LOD) was as low as 6.3 pM. Furthermore, the SAW biosensor exhibited excellent selectivity to Hg2+ compared with that of interfering ions, e.g., Ag+, Ba2+, Cu2+, Zn2+, Mn2+, Fe3+, Ca2+, and Na+. The results provide a new strategy for the preparation of portable devices that can monitor toxic heavy metal ions with high sensitivity and selectivity.
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Affiliation(s)
- Huimin Sun
- School of Materials, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, P. R. China.
| | - Chunzhen Yang
- School of Materials, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, P. R. China.
| | - Hong Wang
- School of Materials, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, P. R. China.
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Zhang H, Dong K, Xiang S, Lin Y, Cha X, Shang Y, Xu W. A Novel Cu2+ Quantitative Detection Nucleic Acid Biosensors Based on DNAzyme and “Blocker” Beacon. Foods 2023; 12:foods12071504. [PMID: 37048325 PMCID: PMC10094606 DOI: 10.3390/foods12071504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Revised: 03/23/2023] [Accepted: 03/28/2023] [Indexed: 04/05/2023] Open
Abstract
In this paper, a “turn-off” biosensor for detecting copper (II) ions based on Cu2+-dependent DNAzyme and a “blocker” beacon were developed. Upon the copper ion being added, the Cu2+-dependent DNAzyme substrate strand was irreversibly cleaved, thereby blocking the occurrence of the ligation reaction and PCR, which inhibited the G-rich sequence from forming the G-quadruplex structure, efficiently reducing the detection signal. This method had the characteristics of strong specificity and high sensitivity compared with the existing method due to the application of ligation-dependent probe signal recognition and amplification procedures. Under the optimized conditions, this method proved to be highly sensitive. The signal decreased as the concentration of copper ions increased, exhibiting a linear calibration from 0.03125 μM to 0.5 μM and a limit of detection of 18.25 nM. Subsequently, the selectivity of this biosensor was verified to be excellent by testing different relevant metal ions. Furthermore, this detection system of copper (II) ions was successfully applied to monitor Cu2+ contained in actual water samples, which demonstrated the feasibility of the biosensor.
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Affiliation(s)
- Hanyue Zhang
- Faculty of Food Science and Engineering, Kunming University of Science and Technology, Kunming 650500, China
| | - Kai Dong
- College of Biological Sciences, China Agricultural University, Beijing 100083, China
| | - Shuna Xiang
- Faculty of Food Science and Engineering, Kunming University of Science and Technology, Kunming 650500, China
| | - Yingting Lin
- Faculty of Food Science and Engineering, Kunming University of Science and Technology, Kunming 650500, China
| | - Xiaoyan Cha
- Faculty of Food Science and Engineering, Kunming University of Science and Technology, Kunming 650500, China
| | - Ying Shang
- Faculty of Food Science and Engineering, Kunming University of Science and Technology, Kunming 650500, China
| | - Wentao Xu
- Key Laboratory of Precision Nutrition and Food Quality, Department of Nutrition and Health, China Agricultural University, Beijing 100083, China
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Chovelon B, Peyrin E, Ragot M, Salem N, Nguyen TG, Auvray B, Henry M, Petrillo MA, Fiore E, Bessy Q, Faure P, Ravelet C. Nile blue as reporter dye in salt aggregation based-colorimetric aptasensors for peptide, small molecule and metal ion detection. Anal Chim Acta 2023; 1243:340840. [PMID: 36697182 DOI: 10.1016/j.aca.2023.340840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 11/21/2022] [Accepted: 01/12/2023] [Indexed: 01/15/2023]
Abstract
Herein, we report a novel approach for the design of a colorimetric aptasensor, relying on a Dye Salt Aggregation-based Colorimetric Oligonucleotide assay (DYSACO assay). This method is based on the use of an intercalating agent, Nile Blue (NB), whose aggregation capacities (and thus modification of its absorption spectrum) are drastically amplified by adding salts to the working solution. The presence of an aptamer could protect NB from such aggregation process due to its intercalation into double-stranded DNA and/or interaction with nucleobases. In response to the addition of the specific ligand, the competition between NB and the target for binding to the aptamer occurs, resulting in an increase in the dye salt aggregation and then in the blue-to-blank color change of the solution. The proof-of-principle was demonstrated by employing the anti-l-tyrosinamide aptamer and the assay was successfully applied to the trace enantiomer detection, allowing the detection of an enantiomeric impurity down to approximately 2% in a non-racemic sample. Through a reversed mechanism based on the increased capture of NB by DNA upon analyte binding, the sensing platform was further demonstrated for the Hg(II) detection. Water samples of different origin were spiked with Hg(II) analyte at final range concentrations comprised between (0.5-15 μM). An excellent overall recovery of 122 ± 14%; 105 ± 14%; 99 ± 9%; was respectively obtained from river, tap and mineral water, suggesting that the sensor can be used under real sample conditions. The assay was also shown to work for sensing the ochratoxin A and d-arginine vasopressin compounds, revealing its simplicity and generalizability potentialities.
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Affiliation(s)
- Benoît Chovelon
- Département de Pharmacochimie Moléculaire, UMR 5063, Grenoble Alpes University - CNRS, France; Département de Biochimie, Toxicologie et Pharmacologie, CHU de Grenoble Site Nord - Institut de Biologie et de Pathologie, F-38041, Grenoble, France
| | - Eric Peyrin
- Département de Pharmacochimie Moléculaire, UMR 5063, Grenoble Alpes University - CNRS, France.
| | - Mailys Ragot
- Département de Pharmacochimie Moléculaire, UMR 5063, Grenoble Alpes University - CNRS, France
| | - Nassim Salem
- Département de Pharmacochimie Moléculaire, UMR 5063, Grenoble Alpes University - CNRS, France
| | - Truong Giang Nguyen
- Département de Pharmacochimie Moléculaire, UMR 5063, Grenoble Alpes University - CNRS, France
| | - Benjamin Auvray
- Département de Pharmacochimie Moléculaire, UMR 5063, Grenoble Alpes University - CNRS, France
| | - Mickael Henry
- Département de Pharmacochimie Moléculaire, UMR 5063, Grenoble Alpes University - CNRS, France
| | - Mel-Alexandre Petrillo
- Département de Pharmacochimie Moléculaire, UMR 5063, Grenoble Alpes University - CNRS, France
| | - Emmanuelle Fiore
- Département de Pharmacochimie Moléculaire, UMR 5063, Grenoble Alpes University - CNRS, France
| | - Quentin Bessy
- Département de Pharmacochimie Moléculaire, UMR 5063, Grenoble Alpes University - CNRS, France
| | - Patrice Faure
- Département de Pharmacochimie Moléculaire, UMR 5063, Grenoble Alpes University - CNRS, France; Département de Biochimie, Toxicologie et Pharmacologie, CHU de Grenoble Site Nord - Institut de Biologie et de Pathologie, F-38041, Grenoble, France
| | - Corinne Ravelet
- Département de Pharmacochimie Moléculaire, UMR 5063, Grenoble Alpes University - CNRS, France.
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Hong SH, Seo KH, Yoon SH, Kim SK, Chon J. Gold Nanoparticle and Polymerase Chain Reaction (PCR)-Based Colorimetric Assay for the Identification of Campylobacter spp. in Chicken Carcass. Food Sci Anim Resour 2023; 43:73-84. [PMID: 36789201 PMCID: PMC9890362 DOI: 10.5851/kosfa.2022.e59] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Revised: 09/27/2022] [Accepted: 10/04/2022] [Indexed: 11/06/2022] Open
Abstract
Campylobacteriosis is a common cause of gastrointestinal disease. In this study, we suggest a general strategy of applying gold nanoparticles (AuNPs) in colorimetric biosensors to detect Campylobacter in chicken carcass. Polymerase chain reaction (PCR) was utilized for the amplification of the target genes, and the thiolated PCR products were collected. Following the blending of colloid AuNPs with PCR products, the thiol bound to the surface of AuNPs, forming AuNP-PCR products. The PCR products had a sufficient negative charge, which enabled AuNPs to maintain a dispersed formation under electrostatic repulsion. This platform presented a color change as AuNPs aggregate. It did not need additional time and optimization of pH for PCR amplicons to adhere to the AuNPs. The specificity of AuNPs of modified primer pairs for mapA from Campylobacter jejuni and ceuE from Campylobacter coli was activated perfectly (C. jejuni, p-value: 0.0085; C. coli, p-value: 0.0239) when compared to Salmonella Enteritidis and Escherichia coli as non-Campylobacter species. Likewise, C. jejuni was successfully detected from artificially contaminated chicken carcass samples. According to the sensitivity test, at least 15 ng/μL of Campylobacter PCR products or 1×103 CFU/mL of cells in the broth was needed for the detection using the optical method.
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Affiliation(s)
- Seung-Hwan Hong
- Center for One Health, College of
Veterinary Medicine, Konkuk University, Seoul 05029,
Korea
| | - Kun-Ho Seo
- Center for One Health, College of
Veterinary Medicine, Konkuk University, Seoul 05029,
Korea
| | - Sung Ho Yoon
- Department of Bioscience and
Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Soo-Ki Kim
- Department of Animal Science and
Technology, Konkuk University, Seoul 05029, Korea
| | - Jungwhan Chon
- Department of Animal Health Care, Kyung-in
Women’s University, Incheon 21041, Korea,Corresponding author: Jungwhan
Chon, Department of Animal Health Care, Kyung-in Women’s University,
Incheon 21041, Korea, Tel: +82-55-320-4081, E-mail:
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11
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Target-induced gold nanoparticles colorimetric sensing coupled with aptamer for rapid and high-sensitivity detecting kanamycin. Anal Chim Acta 2022; 1230:340377. [DOI: 10.1016/j.aca.2022.340377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Revised: 08/23/2022] [Accepted: 09/07/2022] [Indexed: 11/20/2022]
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12
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Wang B, Zhang L, Yin G, Wang J, Wang P, Wang T, Tian J, Yu XA, Chen H. Arg-liposome-amplified colorimetric immunoassay for selective and sensitive detection of cystatin C to predict acute kidney injury. Anal Chim Acta 2022; 1236:340562. [DOI: 10.1016/j.aca.2022.340562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Revised: 10/21/2022] [Accepted: 10/26/2022] [Indexed: 11/01/2022]
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13
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Jinadasa KK, Peña-Vázquez E, Bermejo-Barrera P, Moreda-Piñeiro A. Smart materials for mercury and arsenic determination in food and beverages. Microchem J 2022. [DOI: 10.1016/j.microc.2022.107472] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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14
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Farahani A, Azimi S, Azimi M. Developing an Integrated POC Spectrophotometric Device for Discrimination and Determination of Opioids Based on Gold Nanoparticles. Microchem J 2022. [DOI: 10.1016/j.microc.2022.107930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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15
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Lan Y, He B, Tan CS, Ming D. Applications of Smartphone-Based Aptasensor for Diverse Targets Detection. BIOSENSORS 2022; 12:bios12070477. [PMID: 35884280 PMCID: PMC9312806 DOI: 10.3390/bios12070477] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 06/27/2022] [Accepted: 06/27/2022] [Indexed: 12/17/2022]
Abstract
Aptamers are a particular class of functional recognition ligands with high specificity and affinity to their targets. As the candidate recognition layer of biosensors, aptamers can be used to sense biomolecules. Aptasensors, aptamer-based biosensors, have been demonstrated to be specific, sensitive, and cost-effective. Furthermore, smartphone-based devices have shown their advantages in binding to aptasensors for point-of-care testing (POCT), which offers an immediate or spontaneous responding time for biological testing. This review describes smartphone-based aptasensors to detect various targets such as metal ions, nucleic acids, proteins, and cells. Additionally, the focus is also on aptasensors-related technologies and configurations.
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Affiliation(s)
- Ying Lan
- Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China; (Y.L.); (B.H.)
| | - Baixun He
- Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China; (Y.L.); (B.H.)
| | - Cherie S. Tan
- Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China; (Y.L.); (B.H.)
- Tianjin Key Laboratory of Brain Science and Neuroengineering, Tianjin 300072, China
- Correspondence: (C.S.T.); (D.M.)
| | - Dong Ming
- Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China; (Y.L.); (B.H.)
- Tianjin Key Laboratory of Brain Science and Neuroengineering, Tianjin 300072, China
- Department of Biomedical Engineering, College of Precision Instruments and Optoelectronics Engineering, Tianjin University, Tianjin 300072, China
- Correspondence: (C.S.T.); (D.M.)
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16
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A Simple and Rapid “Signal On” Fluorescent Sensor for Detecting Mercury (II) Based on the Molecular Beacon Aptamer. Foods 2022; 11:foods11131847. [PMID: 35804661 PMCID: PMC9266287 DOI: 10.3390/foods11131847] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2022] [Revised: 06/07/2022] [Accepted: 06/20/2022] [Indexed: 11/16/2022] Open
Abstract
Biosensors for mercury (II) (Hg2+) with high sensitivity are urgently required for food safety, ecosystem protection and disease prevention. In this study, a simple and fast detection method of Hg2+ based on the molecular beacon aptamer was established, according to the principle that Hg2+ could change the structure of the molecular beacon aptamer, resulting in the changed fluorescence intensity. All of the detection conditions were optimized. It was found that an optimal molecular beacon aptamer MB3 showed the optimal response signal in the optimized reaction environment, which was 0.08 μmol/L MB3, 50 mmol/L tris buffer (40 mmol/L NaCl, 10 mmol/L MgCl2, pH 8.1), and a 10 min reaction. Under the optimal detection conditions, the molecular beacon aptamer sensor showed a linear response to Hg2+ concentration within a range from 0.4 to 10 μmol/L and with a detection limit of 0.2254 μmol/L and a precision of 4.9%. The recovery rates of Hg2+ in water samples ranged from 95.00% to 99.25%. The method was convenient and rapid, which could realize the rapid detection of mercury ions in water samples.
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17
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El-Husseini DM, Sayour AE, Melzer F, Mohamed MF, Neubauer H, Tammam RH. Generation and Selection of Specific Aptamers Targeting Brucella Species through an Enhanced Cell-SELEX Methodology. Int J Mol Sci 2022; 23:ijms23116131. [PMID: 35682807 PMCID: PMC9180945 DOI: 10.3390/ijms23116131] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2022] [Revised: 05/26/2022] [Accepted: 05/27/2022] [Indexed: 02/07/2023] Open
Abstract
Brucellae are Gram-negative, aerobic, non-motile coccobacilli causing brucellosis in man and animals. The disease is one of the most significant yet neglected global zoonoses. Especially in developing countries, brucellosis is causing public health problems and economic losses to private animal owners and national revenues. Composed of oligonucleotides, aptamers are chemical analogues of antibodies that are promising components for developing aptamer-based rapid, sensitive, and specific tests to identify the Brucella group of bacteria. For this purpose, aptamers were generated and selected by an enhanced protocol of cell systematic evolution of ligands by exponential enrichment (cell-SELEX). This enhanced cell-SELEX procedure involved the combination of both conventional and toggle cell-SELEX to boost the specificity and binding affinity to whole Brucella cells. This procedure, combined with high-throughput sequencing of the resulting aptamer pools, comprehensive bioinformatics analysis, and wet lab validation assays, led to the selection of a highly sensitive and specific aptamer for those Brucella species known to circulate in Egypt. The isolated candidate aptamer showed dissociation constant (KD) values of 43.5 ± 11, 61.5 ± 8, and 56 ± 10.8 nM for B. melitensis, B. abortus, and B. suis, respectively. This is the first development of a Brucella-specific aptamer using an enhanced combination of conventional and toggle cell-SELEX to the authors’ best knowledge.
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Affiliation(s)
- Dalia M. El-Husseini
- Biotechnology Department, Animal Health Research Institute, Agricultural Research Center, Dokki, Giza 12618, Egypt
- Institute of Bacterial Infections and Zoonoses, Friedrich-Loeffler-Institut, 07743 Jena, Germany;
- Correspondence: (D.M.E.-H.); (F.M.)
| | - Ashraf E. Sayour
- Molecular Biomimetics Research Group, Animal Health Research Institute, Agricultural Research Center, Dokki, Giza 12618, Egypt;
| | - Falk Melzer
- Institute of Bacterial Infections and Zoonoses, Friedrich-Loeffler-Institut, 07743 Jena, Germany;
- Correspondence: (D.M.E.-H.); (F.M.)
| | - Magda F. Mohamed
- Chemistry Department, Faculty of Science, Cairo University, Giza 12613, Egypt; (M.F.M.); (R.H.T.)
| | - Heinrich Neubauer
- Institute of Bacterial Infections and Zoonoses, Friedrich-Loeffler-Institut, 07743 Jena, Germany;
| | - Reham H. Tammam
- Chemistry Department, Faculty of Science, Cairo University, Giza 12613, Egypt; (M.F.M.); (R.H.T.)
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18
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Simultaneous colorimetric and electrochemical detection of trace mercury (Hg 2+) using a portable and miniaturized aptasensor. Biosens Bioelectron 2022; 221:114419. [PMID: 35738991 DOI: 10.1016/j.bios.2022.114419] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Revised: 05/17/2022] [Accepted: 05/20/2022] [Indexed: 11/23/2022]
Abstract
We report a novel aptasensor for the simultaneous colorimetric and electrochemical detection of mercury (Hg2+). This device consists of a paper-based microfluidic component (μ-PAD) incorporated into a miniaturized three-electrode system fabricated through printed circuit board (PCB) technology. This biosensor is portable, rapid, versatile, and can detect Hg2+ down to 0.01 ppm based on 3σ of the blank/slope criteria. Moreover, it is highly selective against As2+, Cu2+, Zn2+, Pb2+, Cd2+, Mg2+, and Fe2+, reaching up to 13 times more of the input signal than the other heavy metals. The colorimetric detection mechanism uses aptamer functionalized polystyrene (PS)-AgNPs and Ps-AuNPs microparticles' specific aggregation. The Ps-AuNPs-based system allows qualitative detection (LOD 5 ppm) and stability over seven days (up to 97.59% signal retention). For the Ps-AgNPs-based system, the detection limit is 0.5 ppm with a linear range from 0.5 to 20 ppm (adjusted R2= 0.986) and stability over 30 days (up to 94.95% signal retention). The electrochemical component measures changes in charge transfer resistance upon target-aptamer hybridization using a [Ru (NH3)6]3+Cl3] redox probe. The latest component presents a linear range from 0.01 to 1 ppm (adjusted R2= 0.935) with a LOD of 0.01 ppm and performance stability over seven days (up to 102.52 ± 11.7 signal retention). This device offers a universal dual detection platform with multiplexing, multi-replication, quantitative color analysis, and minimization of false results. Furthermore, detection results in river samples showed recoveries up to 91.12% (RSD 0.85) and 105.61% (RSD 1.62) for the electrochemical and colorimetric components, respectively. The proposed system is highly selective with no false-positive or false-negative results in an overall wide linear range and can safeguard the accuracy of detection results in aptasensing platforms in general.
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19
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Toppo AL, Jujjavarapu SE. New insights for integration of nano particle with microfluidic systems for sensor applications. Biomed Microdevices 2022; 24:13. [PMID: 35171352 DOI: 10.1007/s10544-021-00598-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/10/2021] [Indexed: 11/29/2022]
Abstract
A biosensor is a compact device, which utilizes biological derived recognition component, immobilized on a transducer to analyze an analyte. Nanoparticles with their unique chemical and physical properties are versatile in their applications to develop as sensors. Different nanoparticles play different roles in the sensing systems like metal and metal oxide nanoparticles. The application of Gold, Silver and Copper nanoparticles will be discussed in brief. The nanoparticles typically function as substrates for immobilization of biomolecules, as catalytic agent, electron transfer agent between electrode surface and the biomolecules, and as reactants. Microfluidic deals with manipulating very small volumes of fluids (micro and nanoliters). This miniaturized platform enhances control of flow conditions and mixing rate of fluids. The microfluidics improves the sensitivity of the analysis, and reduces the volumes of sample and reagent in the analysis. The review specifically aims at representing microfluidics-based sensors and nanoparticle based sensors. This review will also focus on probable merger of these two fields to take advantage of both the fields and this will help in pushing the boundaries of these fields further more.
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Affiliation(s)
- A L Toppo
- Deparment of Biotechnology, National Institute of Technology Raipur, Raipur, India
| | - S E Jujjavarapu
- Deparment of Biotechnology, National Institute of Technology Raipur, Raipur, India.
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20
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Rapid color-fading colorimetric sensing of Hg in environmental samples: regulation mechanism from DNA dimension. Mikrochim Acta 2022; 189:76. [PMID: 35091871 DOI: 10.1007/s00604-022-05177-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2021] [Accepted: 01/05/2022] [Indexed: 12/23/2022]
Abstract
It was found that dimension change of aptamer DNA significantly weakened the mimicking activity of gold nanozyme, which was contrary to previous research. Based on this, a rapid colorimetric method for the detection of low concentrations of mercury in environmental media was fabricated. It was observed that 40 nM Hg2+ causes color changes in solution. The detection limit of absorbance measurements was estimated to be 9.3 × 10-11 M. The assay was fast and could complete a single test in half an hour. The detection results for real environment samples confirmed the reliability of the colorimetric analysis in practical application. The proposed assay provides an alternative method for real-time monitoring of mercury in the environment. In particular, the charge effect on the affinity of nanozyme consummated the DNA regulation mechanism for the simulated enzyme activity.
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21
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Guo Y, Shi M, Liu X, Liang H, Gao L, Liu Z, Li J, Yu D, Li K. Selection and preliminary application of DNA aptamer targeting A549 excreta in cell culture media. Microchem J 2021. [DOI: 10.1016/j.microc.2021.106811] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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22
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Shen L, Wang P, Ke Y. DNA Nanotechnology-Based Biosensors and Therapeutics. Adv Healthc Mater 2021; 10:e2002205. [PMID: 34085411 DOI: 10.1002/adhm.202002205] [Citation(s) in RCA: 47] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 02/19/2021] [Indexed: 12/19/2022]
Abstract
Over the past few decades, DNA nanotechnology engenders a vast variety of programmable nanostructures utilizing Watson-Crick base pairing. Due to their precise engineering, unprecedented programmability, and intrinsic biocompatibility, DNA nanostructures cannot only interact with small molecules, nucleic acids, proteins, viruses, and cancer cells, but also can serve as nanocarriers to deliver different therapeutic agents. Such addressability innate to DNA nanostructures enables their use in various fields of biomedical applications such as biosensors and cancer therapy. This review is begun with a brief introduction of the development of DNA nanotechnology, followed by a summary of recent applications of DNA nanostructures in biosensors and therapeutics. Finally, challenges and opportunities for practical applications of DNA nanotechnology are discussed.
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Affiliation(s)
- Luyao Shen
- Wallace H. Coulter Department of Biomedical Engineering Georgia Institute of Technology and Emory University Atlanta GA 30322 USA
- Institute of Molecular Medicine Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine State Key Laboratory of Oncogenes and Related Genes Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200127 China
| | - Pengfei Wang
- Institute of Molecular Medicine Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine State Key Laboratory of Oncogenes and Related Genes Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200127 China
| | - Yonggang Ke
- Wallace H. Coulter Department of Biomedical Engineering Georgia Institute of Technology and Emory University Atlanta GA 30322 USA
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23
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Gong Z, Chan HT, Chen Q, Chen H. Application of Nanotechnology in Analysis and Removal of Heavy Metals in Food and Water Resources. NANOMATERIALS 2021; 11:nano11071792. [PMID: 34361182 PMCID: PMC8308365 DOI: 10.3390/nano11071792] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/06/2021] [Revised: 07/02/2021] [Accepted: 07/05/2021] [Indexed: 12/07/2022]
Abstract
Toxic heavy metal contamination in food and water from environmental pollution is a significant public health issue. Heavy metals do not biodegrade easily yet can be enriched hundreds of times by biological magnification, where toxic substances move up the food chain and eventually enter the human body. Nanotechnology as an emerging field has provided significant improvement in heavy metal analysis and removal from complex matrices. Various techniques have been adapted based on nanomaterials for heavy metal analysis, such as electrochemical, colorimetric, fluorescent, and biosensing technology. Multiple categories of nanomaterials have been utilized for heavy metal removal, such as metal oxide nanoparticles, magnetic nanoparticles, graphene and derivatives, and carbon nanotubes. Nanotechnology-based heavy metal analysis and removal from food and water resources has the advantages of wide linear range, low detection and quantification limits, high sensitivity, and good selectivity. There is a need for easy and safe field application of nanomaterial-based approaches.
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Affiliation(s)
- Zhaoyuan Gong
- School of Chinese Medicine, Hong Kong Baptist University, Hong Kong 999077, China; (Z.G.); (H.T.C.)
- Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing 100700, China
| | - Hiu Ting Chan
- School of Chinese Medicine, Hong Kong Baptist University, Hong Kong 999077, China; (Z.G.); (H.T.C.)
| | - Qilei Chen
- School of Chinese Medicine, Hong Kong Baptist University, Hong Kong 999077, China; (Z.G.); (H.T.C.)
- Correspondence: (Q.C.); (H.C.); Tel.: +852-6649-4275 (Q.C.); +852-3411-2060 (H.C.)
| | - Hubiao Chen
- School of Chinese Medicine, Hong Kong Baptist University, Hong Kong 999077, China; (Z.G.); (H.T.C.)
- Correspondence: (Q.C.); (H.C.); Tel.: +852-6649-4275 (Q.C.); +852-3411-2060 (H.C.)
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24
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Lee ES, Kim EJ, Park TK, Bae DW, Cha SS, Kim TW, Kim YP. Gold nanoparticle-assisted SELEX as a visual monitoring platform for the development of small molecule-binding DNA aptasensors. Biosens Bioelectron 2021; 191:113468. [PMID: 34233257 DOI: 10.1016/j.bios.2021.113468] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 06/09/2021] [Accepted: 06/26/2021] [Indexed: 02/07/2023]
Abstract
To resolve time-consuming and imperceptible monitoring problems in the traditional systematic evolution of ligands by exponential enrichment (SELEX), we report gold nanoparticle-assisted SELEX (GNP-SELEX) as a visual, proofreading, and self-monitoring platform and its application to small molecule-binding single-stranded DNA (ssDNA) aptasensors. Through the colorimetric changes between rounds, GNP-SELEX enabled the rapid determination of target-specific aptamer library enrichment with neither target modification nor extra monitoring process. We identified ssDNA aptamers with high selectivity and binding affinity by targeting two small molecules (brassinolide; BL and bisphenol A; BPA) as a model. The rational design of selected aptamers by 3D molecular simulation increased their ability to detect BL or BPA in real samples as bioreceptors. These results suggest that GNP-SELEX is useful as a self-monitoring platform to discover ssDNA aptamers as well as to develop aptasensors for diverse targets in a rapid and simple way.
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Affiliation(s)
- Eun-Song Lee
- Department of Life Science, Hanyang University, Seoul, 04763, Republic of Korea; Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, 04763, Republic of Korea
| | - Eun-Ji Kim
- Department of Life Science, Hanyang University, Seoul, 04763, Republic of Korea
| | - Tae-Ki Park
- Department of Life Science, Hanyang University, Seoul, 04763, Republic of Korea
| | - Da-Woon Bae
- Department of Chemistry and Nanoscience, Ewha Womans University, Seoul, 03760, Republic of Korea
| | - Sun-Shin Cha
- Department of Chemistry and Nanoscience, Ewha Womans University, Seoul, 03760, Republic of Korea
| | - Tae-Wuk Kim
- Department of Life Science, Hanyang University, Seoul, 04763, Republic of Korea; Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, 04763, Republic of Korea; Research Institute for Natural Sciences, Hanyang University, Seoul, 04763, Republic of Korea.
| | - Young-Pil Kim
- Department of Life Science, Hanyang University, Seoul, 04763, Republic of Korea; Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, 04763, Republic of Korea; Research Institute for Natural Sciences, Hanyang University, Seoul, 04763, Republic of Korea; Department of HY-KIST Bio-Convergence, Hanyang University, Seoul, 04763, Republic of Korea.
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25
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Yu H, Wang M, Cao J, She Y, Zhu Y, Ye J, Abd El-Aty AM, Hacımüftüoğlu A, Wang J, Lao S. Dual-mode detection of organophosphate pesticides in pear and Chinese cabbage based on fluorescence and AuNPs colorimetric assays. Food Chem 2021; 364:130326. [PMID: 34171812 DOI: 10.1016/j.foodchem.2021.130326] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Revised: 05/12/2021] [Accepted: 06/06/2021] [Indexed: 10/21/2022]
Abstract
Herein, a dual-mode method based on fluorescent and colorimetric sensor was developed for determination of organophosphate pesticides (OPs). In this study, indoxyl acetate (IDA) was hydrolyzed by esterase into indophenol. Indophenol leads to changes in fluorescence signal and aggregation of gold nanoparticles (AuNPs); ultimately changing the color from red to blue. When OPs exist, the formation of indophenol was inhibited. With increasing the concentrations of OPs, the enhancement rate of fluorescence signal decreases, and the color change of AuNPs weakened gradually. The assay was applied for determination of dichlorvos, trichlorfon, and paraoxon, and the limits of detection (LODs) were 0.0032 mg/kg, 0.0096 mg/kg, and 0.0074 mg/kg (fluorometric assay), and 0.0120 mg/kg, 0.0224 mg/kg, and 0.0106 mg/kg (colorimetric assay), respectively. Finally, such a convenient and sensitive sensing assay was successfully applied for quantification of OPs in pear and Chinese cabbage with good recoveries ranged between 80.19 and 116.93%.
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Affiliation(s)
- He Yu
- Institute of Quality Standard & Testing Technology for Agro-products, Chinese Academy of Agricultural Sciences, 100081 Beijing, China; Key Laboratory of Agrofood Safety and Quality (Beijing), Ministry of Agriculture, 100081 Beijing, China
| | - Miao Wang
- Institute of Quality Standard & Testing Technology for Agro-products, Chinese Academy of Agricultural Sciences, 100081 Beijing, China; Key Laboratory of Agrofood Safety and Quality (Beijing), Ministry of Agriculture, 100081 Beijing, China.
| | - Jing Cao
- Institute of Quality Standard & Testing Technology for Agro-products, Chinese Academy of Agricultural Sciences, 100081 Beijing, China; Key Laboratory of Agrofood Safety and Quality (Beijing), Ministry of Agriculture, 100081 Beijing, China
| | - Yongxin She
- Institute of Quality Standard & Testing Technology for Agro-products, Chinese Academy of Agricultural Sciences, 100081 Beijing, China; Key Laboratory of Agrofood Safety and Quality (Beijing), Ministry of Agriculture, 100081 Beijing, China
| | - Yongan Zhu
- Institute of Quality Standard & Testing Technology for Agro-products, Chinese Academy of Agricultural Sciences, 100081 Beijing, China; Key Laboratory of Agrofood Safety and Quality (Beijing), Ministry of Agriculture, 100081 Beijing, China
| | - Jiaming Ye
- Yangtze Delta Region Institute of Tsinghua University, 314006 Jiaxing, China
| | - A M Abd El-Aty
- State Key Laboratory of Biobased Material and Green Papermaking, Qilu University of Technology, Shandong Academy of Sciences, Jinan 250353, China; Department of Pharmacology, Faculty of Veterinary Medicine, Cairo University, 12211 Giza, Egypt; Department of Medical Pharmacology, Medical Faculty, Ataturk University, 25240 Erzurum, Turkey.
| | - Ahmet Hacımüftüoğlu
- Department of Medical Pharmacology, Medical Faculty, Ataturk University, 25240 Erzurum, Turkey
| | - Jing Wang
- Institute of Quality Standard & Testing Technology for Agro-products, Chinese Academy of Agricultural Sciences, 100081 Beijing, China; Key Laboratory of Agrofood Safety and Quality (Beijing), Ministry of Agriculture, 100081 Beijing, China; Agro-products Quality Safety and Testing Technology Research Institute, Guangxi Academy of Agricultural Sciences, 53003 Nanning, China.
| | - Shuibing Lao
- Agro-products Quality Safety and Testing Technology Research Institute, Guangxi Academy of Agricultural Sciences, 53003 Nanning, China
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26
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Qi Y, Song D, Chen Y. Colorimetric oligonucleotide-based sensor for ultra-low Hg 2+ in contaminated environmental medium: Convenience, sensitivity and mechanism. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 766:142579. [PMID: 33601667 DOI: 10.1016/j.scitotenv.2020.142579] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Revised: 09/21/2020] [Accepted: 09/23/2020] [Indexed: 06/12/2023]
Abstract
A colorimetric sensor for detection of Hg2+ is developed via graphene oxide/gold nanoparticles (GO/AuNPs) nanocomposite as peroxidase mimic. In the absence of Hg2+, the adsorption of ss-DNA on GO/AuNPs resulted in the decrease of peroxidase-like activity of GO/AuNPs, which catalyzed the oxidation of 3, 3, 5, 5-tetramethylbenzidine (TMB) to be very light blue. In the presence of Hg2+, the oligonucleotides of T-Hg2+-T conformation formed by thymine-Hg(II)-thymine interaction could not be adsorbed or bonded on GO/AuNPs, and the GO/AuNPs resumed their original high activity of peroxidase mimic and catalyzed the oxidation of TMB into distinct blue product. Under optimized conditions, the absorbance value at the wavelength of 655 nm (A655) was linearly related with the concentration of Hg2+ in the range between 5.2 × 10-9 M and 1.2 × 10-7 M with a detection limit of 3.8 × 10-10 M. By visual observation with the naked eye, Hg2+ as low as 3.3 × 10-7 M could cause color change in solution. The specific T-Hg2+-T binding made it easy to selectively detect Hg2+. The results show that the colorimetric assay offers great potential for the detection of Hg2+ in real samples.
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Affiliation(s)
- Yingying Qi
- College of Geology and Environment, Xi'an University of Science and Technology, Xi'an 710054, China; Shaanxi Provincial Key Laboratory of Geological Support for Coal Green Exploitation, Xi'an 710054, China.
| | - Dandan Song
- College of Geology and Environment, Xi'an University of Science and Technology, Xi'an 710054, China
| | - Yiting Chen
- College of Geology and Environment, Xi'an University of Science and Technology, Xi'an 710054, China
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27
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Rapid detection of mercury in food via rhodamine 6G signal using surface-enhanced Raman scattering coupled multivariate calibration. Food Chem 2021; 358:129844. [PMID: 33940287 DOI: 10.1016/j.foodchem.2021.129844] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2020] [Revised: 03/18/2021] [Accepted: 04/07/2021] [Indexed: 11/22/2022]
Abstract
Considering food safety and limitations of biorecognition elements, this study focused on the development of a novel method for predicting mercury (Hg2+) in fish and water samples using surface-enhanced Raman scattering (SERS) coupled wavenumber selection chemometric method. Herein, core-shell Au@Ag nanoparticles (Au@Ag NPs) were synthesized as SERS substrate, and rhodamine 6G (R6G) was used as signaling probe for Hg2+. In the presence of Hg2+, citrate ion of Au@Ag NPs induced complexation and become amalgam causes desorption of R6G occurred, resulted in decreased SERS signal intensity. Compared to surface Plasmon resonance method, SERS coupled genetic algorithm-partial least squares realized good correlation coefficient (0.9745 and 0.9773) in their prediction over the concentration ranges 1.0 × 102 to 1.0 × 10-3 µg/g. The recovery (88.45 - 94.73%) and precision (coefficient of variations, 3.28 - 5.76%) exhibiting satisfactory results suggested that the proposed method could be employed to predict Hg2+ in fish and water samples towards quality and safety monitoring.
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28
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Lyu C, Khan IM, Wang Z. Capture-SELEX for aptamer selection: A short review. Talanta 2021; 229:122274. [PMID: 33838776 DOI: 10.1016/j.talanta.2021.122274] [Citation(s) in RCA: 97] [Impact Index Per Article: 32.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 02/26/2021] [Accepted: 03/01/2021] [Indexed: 12/18/2022]
Abstract
The emerging aptamer, developed through the systematic evolution of ligands by exponential enrichment (SELEX) process, has revolutionized and facilitated the discoveries in basic research. Among all SELEX technology, Capture-SELEX is a variant of the in vitro selection process, which is suitable for isolating aptamers against small molecules. Capture-SELEX library was developed to enable the immobilization of the oligonucleotides instead of the target molecules during the aptamer selection process. The review provides an update on the recent-advances in this new screening method with particular emphasis on key points of capture protocol and its applications. The limitations and the prospects of the Capture-SELEX are also discussed. We hope that present review will inspire more researchers to understand the selection problems from the perspective of Capture-SELEX. Moreover, it will open new pave to improve the efficiency and success of screening to meet the growing demand for aptasensor discovery in small molecules.
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Affiliation(s)
- Chen Lyu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China; School of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Imran Mahmood Khan
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China; School of Food Science and Technology, Jiangnan University, Wuxi, China; International Joint Laboratory on Food Safety, Jiangnan University, Wuxi, China; Synergetic Innovation Center of Food Safety and Quality Control of Jiangsu Province, China
| | - Zhouping Wang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China; School of Food Science and Technology, Jiangnan University, Wuxi, China; International Joint Laboratory on Food Safety, Jiangnan University, Wuxi, China; Synergetic Innovation Center of Food Safety and Quality Control of Jiangsu Province, China.
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29
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Zhang F, Liu J. Label‐Free Colorimetric Biosensors Based on Aptamers and Gold Nanoparticles: A Critical Review. ACTA ACUST UNITED AC 2020. [DOI: 10.1002/anse.202000023] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Fang Zhang
- College of Biological Science and Engineering Fuzhou University Fuzhou 350108 People's Republic of China
- Department of Chemistry Waterloo Institute for Nanotechnology University of Waterloo Waterloo N2 L 3G1 Ontario Canada
| | - Juewen Liu
- Department of Chemistry Waterloo Institute for Nanotechnology University of Waterloo Waterloo N2 L 3G1 Ontario Canada
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30
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Zhang X, Shen Z, Su W, Wu H, Gopinath SC, Chen R. Gold nanoparticle assembly and disassembly in colorimetric immunoassay to detect 17β-estradiol and determine gynecological disorder. Process Biochem 2020. [DOI: 10.1016/j.procbio.2020.08.012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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31
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Ning Y, Hu J, Lu F. Aptamers used for biosensors and targeted therapy. Biomed Pharmacother 2020; 132:110902. [PMID: 33096353 PMCID: PMC7574901 DOI: 10.1016/j.biopha.2020.110902] [Citation(s) in RCA: 56] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2020] [Revised: 10/12/2020] [Accepted: 10/14/2020] [Indexed: 01/07/2023] Open
Abstract
Aptamers are single-stranded nucleic acid sequences that can bind to target molecules with high selectivity and affinity. Most aptamers are screened in vitro by a combinatorial biology technique called systematic evolution of ligands by exponential enrichment (SELEX). Since aptamers were discovered in the 1990s, they have attracted considerable attention and have been widely used in many fields owing to their unique advantages. In this review, we present an overview of the advancements made in aptamers used for biosensors and targeted therapy. For the former, we will discuss multiple aptamer-based biosensors with different principles detected by various signaling methods. For the latter, we will focus on aptamer-based targeted therapy using aptamers as both biotechnological tools for targeted drug delivery and as targeted therapeutic agents. Finally, challenges and new perspectives associated with these two regions were further discussed. We hope that this review will help researchers interested in aptamer-related biosensing and targeted therapy research.
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Affiliation(s)
- Yi Ning
- Department of Microbiology, The Medicine School of Hunan University of Chinese Medicine, Changsha, Hunan, 410208, PR China
| | - Jue Hu
- Department of Microbiology, The Medicine School of Hunan University of Chinese Medicine, Changsha, Hunan, 410208, PR China
| | - Fangguo Lu
- Department of Microbiology, The Medicine School of Hunan University of Chinese Medicine, Changsha, Hunan, 410208, PR China.
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32
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Caglayan MO. Mercuric ion detection by plasmon-enhanced spectrophotometric ellipsometer using specific oligonucleotide probes. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 241:118682. [PMID: 32650242 DOI: 10.1016/j.saa.2020.118682] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2020] [Revised: 06/18/2020] [Accepted: 06/30/2020] [Indexed: 06/11/2023]
Abstract
Pollution due to heavy metal ions, including mercury, has become a major issue because of their toxicities. It is required to monitor mercury levels in aqueous media using fast and selective methods with high accuracy. Ellipsometry is a promising technique for instance when it's combined with the plasmon resonance phenomena. We reported a biosensor system available for qualitative/quantitative determination of mercuric ions in aqueous media where both the spectrophotometric ellipsometry and oligonucleotide recognition elements were used. A single step assay using both a linear (ProbeL) and a hair-pin (ProbeH) type oligonucleotide probe as a recognition element, in addition to a sandwich-type (ProbeLS) assay were developed and compared. The detection limits were 0.23 nM, 0.03 nM and 0.15 pM for ProbeL, ProbeH and ProbeLS, respectively. The detection range was between 0.05 nM and 100 nM Hg2+ for all assays proposed herein.
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Affiliation(s)
- Mustafa Oguzhan Caglayan
- Bilecik Seyh Edebali University, Faculty of Engineering, Bioengineering Department, Bilecik, Turkiye.
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33
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Meir R, Zverzhinetsky M, Harpak N, Borberg E, Burstein L, Zeiri O, Krivitsky V, Patolsky F. Direct Detection of Uranyl in Urine by Dissociation from Aptamer-Modified Nanosensor Arrays. Anal Chem 2020; 92:12528-12537. [PMID: 32842739 DOI: 10.1021/acs.analchem.0c02387] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
An ever-growing demand for uranium in various industries raises concern for human health of both occupationally exposed personnel and the general population. Toxicological effects related to uranium (natural, enriched, or depleted uranium) intake involve renal, pulmonary, neurological, skeletal, and hepatic damage. Absorbed uranium is filtered by the kidneys and excreted in the urine, thus making uranium detection in urine a primary indication for exposure and body burden assessment. Therefore, the detection of uranium contamination in bio-samples (urine, blood, saliva, etc.,) is of crucial importance in the field of occupational exposure and human health-related applications, as well as in nuclear forensics. However, the direct determination of uranium in bio-samples is challenging because of "ultra-low" concentrations of uranium, inherent matrix complexity, and sample diversity, which pose a great analytical challenge to existing detection methods. Here, we report on the direct, real-time, sensitive, and selective detection of uranyl ions in unprocessed and undiluted urine samples using a uranyl-binding aptamer-modified silicon nanowire-based field-effect transistor (SiNW-FET) biosensor, with a detection limit in the picomolar concentration range. The aptamer-modified SiNW-FET presented in this work enables the simple and sensitive detection of uranyl in urine samples. The experimental approach has a straight-forward implementation to other metals and toxic elements, given the availability of target-specific aptamers. Combining the high surface-to-volume ratio of SiNWs, the high affinity and selectivity of the uranyl-binding aptamer, and the distinctive sensing methodology gives rise to a practical platform, offering simple and straightforward sensing of uranyl levels in urine, suitable for field deployment and point-of-care applications.
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Affiliation(s)
- Reut Meir
- School of Chemistry, the Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel.,Department of Analytical Chemistry, Nuclear Research Center, Negev, Beer-Sheva 84190, Israel
| | - Marina Zverzhinetsky
- School of Chemistry, the Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel
| | - Nimrod Harpak
- School of Chemistry, the Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel
| | - Ella Borberg
- School of Chemistry, the Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel
| | - Larisa Burstein
- Wolfson Applied Materials Research Center, Tel Aviv University, Tel Aviv 69978, Israel
| | - Offer Zeiri
- Department of Analytical Chemistry, Nuclear Research Center, Negev, Beer-Sheva 84190, Israel
| | - Vadim Krivitsky
- School of Chemistry, the Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel
| | - Fernando Patolsky
- School of Chemistry, the Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel.,Department of Materials Science and Engineering, the Iby and Aladar Fleischman Faculty of Engineering, Tel Aviv University, Tel Aviv 69978, Israel
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34
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Chen XX, Lin ZZ, Yao QH, Huang ZY. A practical aptaprobe for sulfadimethoxine residue detection in water and fish based on the fluorescence quenching of CdTe QDs by poly(diallyldimethylammonium chloride). J Food Compost Anal 2020. [DOI: 10.1016/j.jfca.2020.103526] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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35
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A review on nanostructure-based mercury (II) detection and monitoring focusing on aptamer and oligonucleotide biosensors. Talanta 2020; 220:121437. [PMID: 32928439 DOI: 10.1016/j.talanta.2020.121437] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Revised: 07/11/2020] [Accepted: 07/19/2020] [Indexed: 02/08/2023]
Abstract
Heavy metal ion pollution is a severe problem in environmental protection and especially in human health due to their bioaccumulation in organisms. Mercury (II) (Hg2+), even at low concentrations, can lead to DNA damage and give permanent harm to the central nervous system by easily passing through biological membranes. Therefore, sensitive detection and monitoring of Hg2+ is of particular interest with significant specificity. In this review, aptamer-based strategies in combination with nanostructures as well as several other strategies to solve addressed problems in sensor development for Hg2+ are discussed in detail. In particular, the analytical performance of different aptamer and oligonucleotide-based strategies using different signal improvement approaches based on nanoparticles were compared within each strategy and in between. Although quite a number of the suggested methodologies analyzed in this review fulfills the standard requirements, further development is still needed on real sample analysis and analytical performance parameters.
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36
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An ellipsometric biosensor using aptamer for the detection of mercuric ions. CHEMICAL PAPERS 2020. [DOI: 10.1007/s11696-020-01282-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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37
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Schmitz FRW, Valério A, de Oliveira D, Hotza D. An overview and future prospects on aptamers for food safety. Appl Microbiol Biotechnol 2020; 104:6929-6939. [PMID: 32588103 PMCID: PMC7315907 DOI: 10.1007/s00253-020-10747-0] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2020] [Revised: 06/10/2020] [Accepted: 06/16/2020] [Indexed: 02/07/2023]
Abstract
Introduction Many bacteria are responsible for infections in humans and plants, being found in vegetables, water, and medical devices. Most bacterial detection methods are time-consuming and take days to give the result. Aptamers are a promising alternative for a quick and reliable measurement technique to detect bacteria present in food products. Selected aptamers are DNA or RNA oligonucleotides that can bind with bacteria or other molecules with affinity and specificity for the target cells by the SELEX or cell-SELEX technique. This method is based on some rounds to remove the non-ligand oligonucleotides, leaving the aptamers specific to bind to the selected bacteria. Compared with conventional methodologies, the detection approach using aptamers is a rapid, low-cost form of analysis. Objective This review summarizes obtention methods and applications of aptamers in the food industry and biotechnology. Besides, different techniques with aptamers are presented, which enable more effective target detection. Conclusion Applications of aptamers as biosensors, or the association of aptamers with nanomaterials, may be employed in analyses by colorimetric, fluorescence, or electrical devices. Additionally, more efficient ways of sample preparation are presented, which can support food safety to provide human health, with a low-cost method for contaminant detection.Key points • Aptamers are promising for detecting contaminants outbreaks. • Studies are needed to identify aptamers for different targets. |
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Affiliation(s)
- Fernanda Raquel Wust Schmitz
- Department of Chemical Engineering and Food Engineering (EQA), Federal University of Santa Catarina (UFSC), Florianópolis, SC, 88040-900, Brazil
| | - Alexsandra Valério
- Department of Chemical Engineering and Food Engineering (EQA), Federal University of Santa Catarina (UFSC), Florianópolis, SC, 88040-900, Brazil
| | - Débora de Oliveira
- Department of Chemical Engineering and Food Engineering (EQA), Federal University of Santa Catarina (UFSC), Florianópolis, SC, 88040-900, Brazil.
| | - Dachamir Hotza
- Department of Chemical Engineering and Food Engineering (EQA), Federal University of Santa Catarina (UFSC), Florianópolis, SC, 88040-900, Brazil
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38
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Cao Z, Wang S, Liu Z, Xue C, Mao X. A rapid, easy, and sensitive method for detecting His-tag-containing chitinase based on ssDNA aptamers and gold nanoparticles. Food Chem 2020; 330:127230. [PMID: 32526651 DOI: 10.1016/j.foodchem.2020.127230] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2019] [Revised: 01/30/2020] [Accepted: 06/01/2020] [Indexed: 01/05/2023]
Abstract
Chitooligosaccharides are oligosaccharides with many biological activities that can be used in food production for sweeteners, preservatives and humectants, among other products. Chitin, a long-chain polymer of N-acetylglucosamine and a derivative of glucose, can be hydrolyzed by applying chitinase to break down glycosidic bonds to form chitooligosaccharides. Chitinases arising from heterologous gene expression are usually linked to a 6 × His-tag to facilitate easy purification. Heterologously expressed chitinase linked to a 6 × His-tag is a transgenic element, but enzyme activity tests cannot be used to distinguish transgenic elements from natural elements. In this study, we established a rapid and easy method to detect His-tag-containing chitinase using gold nanoparticles (AuNPs) and ssDNA aptamers. Using this method, His-tag-containing chitinase could be detected at concentrations as low as 0.136 nM within 5 min. Color changes of AuNPs showed a positive correlation with His-tag-containing chitinase concentrations.
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Affiliation(s)
- Zhuoning Cao
- College of Food Science and Engineering, Ocean University of China, Qingdao 266003, China
| | - Sai Wang
- College of Food Science and Engineering, Ocean University of China, Qingdao 266003, China.
| | - Zhen Liu
- College of Food Science and Engineering, Ocean University of China, Qingdao 266003, China.
| | - Changhu Xue
- College of Food Science and Engineering, Ocean University of China, Qingdao 266003, China; Laboratory for Marine Drugs and Bioproducts of Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China.
| | - Xiangzhao Mao
- College of Food Science and Engineering, Ocean University of China, Qingdao 266003, China; Laboratory for Marine Drugs and Bioproducts of Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China.
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39
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Yu L, Song Z, Peng J, Yang M, Zhi H, He H. Progress of gold nanomaterials for colorimetric sensing based on different strategies. Trends Analyt Chem 2020. [DOI: 10.1016/j.trac.2020.115880] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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40
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Khoshbin Z, Housaindokht MR, Izadyar M, Bozorgmehr MR, Verdian A. Temperature and molecular crowding effects on the sensitivity of T30695 aptamer toward Pb2+ion: a joint molecular dynamics simulation and experimental study. MOLECULAR SIMULATION 2020. [DOI: 10.1080/08927022.2020.1751842] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Zahra Khoshbin
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
| | | | - Mohammad Izadyar
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
| | | | - Asma Verdian
- Department of Food Safety and Quality Control, Research Institute of Food Science and Technology (RIFST), Mashhad, Iran
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41
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Xing Y, Zhu Q, Zhou X, Qi P. A gold nanoparticle-based colorimetric mercury(II) biosensor using a DNA probe with phosphorothioate RNA modification and exonuclease III-assisted signal amplification. Mikrochim Acta 2020; 187:214. [PMID: 32162015 DOI: 10.1007/s00604-020-4184-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2019] [Accepted: 02/24/2020] [Indexed: 12/12/2022]
Abstract
Herein, we report a rapid and sensitive colorimetric detection of Hg2+ by designing a specific DNA probe with phosphorothioate RNA modification (PS-probe) for Hg2+ recognition and utilizing DNA-modified gold nanoparticles (DNA-AuNPs) as the transducer. The distance between two DNA-AuNPs is controlled by a linker DNA, providing the linker DNA-regulated aggregation or dispersion status of AuNPs in solution. Exonuclease III (Exo III) can trigger the recycled digestion of linker DNA strands, inhibiting the reformation of aggregated nanoparticles and hence leading to a color shift from purple to red. However, the Hg2+-induced cleavage of the PS-probe can efficiently prevent the digestion of linker DNA strands by Exo III and hence reassemble the modified AuNPs to form aggregates in purple color. Thus, a positive correlation between the linker DNA strands left and the addition of Hg2+ provides a quantitative basis for Hg2+ sensing. A linear range of A520/A700 versus Hg2+ concentration is achieved in the range 2-100 nM associated with a detection limit as low as 1.30 ± 0.04 nM. Moreover, the biosensor exhibits excellent selectivity for Hg2+. The strong selectivity behavior was confirmed by recoveries ranging from 96 to 114% in real water samples. Graphical abstractSchematic representation of sensing mechanism of Hg2+ using a DNA probe with phosphorothioate RNA modification (PS-probe) and Exo III-assisted signal amplification.
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Affiliation(s)
- Yunpeng Xing
- State Key Joint Laboratory of ESPC, School of Environment, Tsinghua University, Beijing, 100084, China.,State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, China.,National Engineering Laboratory for advanced technology and equipment of water environment pollution monitoring, Changsha, 410205, China
| | - Qian Zhu
- State Key Joint Laboratory of ESPC, School of Environment, Tsinghua University, Beijing, 100084, China
| | - Xiaohong Zhou
- State Key Joint Laboratory of ESPC, School of Environment, Tsinghua University, Beijing, 100084, China. .,National Engineering Laboratory for advanced technology and equipment of water environment pollution monitoring, Changsha, 410205, China.
| | - Peishi Qi
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, China.
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42
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Inamuddin, Kanchi S. One-pot biosynthesis of silver nanoparticle using Colocasia esculenta extract: Colorimetric detection of melamine in biological samples. J Photochem Photobiol A Chem 2020. [DOI: 10.1016/j.jphotochem.2019.112310] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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43
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Wu S, Yu Q, He C, Duan N. Colorimetric aptasensor for the detection of mercury based on signal intensification by rolling circle amplification. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 224:117387. [PMID: 31352141 DOI: 10.1016/j.saa.2019.117387] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2019] [Revised: 07/07/2019] [Accepted: 07/13/2019] [Indexed: 06/10/2023]
Abstract
Techniques that are sensitive to detect mercury ion (Hg2+) are very important, due to its serious threat to public health and food security. In this work, a colorimetric aptasensor was fabricated for the detection of Hg2+ based on rolling circle amplification (RCA). The aptamer was immobilized onto the microplate and hybridized with its complementary strand (cDNA1) which linked with a primer for triggering the RCA reaction of circular template. The successfully RCA process led to the formation of long ssDNA chains on the microplate, which created many hybridized DNA fragments for bio-cDNA2. The tagged amount of horseradish peroxidase (HRP) was enhanced through the avidin/biotin binding between avi-HRP and bio-cDNA2. In the addition of TMB-H2O2, HRP was catalyzed and generated an optical signal. However, in the presence of target, Hg2+ specifically and preferentially bound with aptamer and formed a strong and stable T-Hg2+-T complex, which led to the release of cDNA1 and HRP cluster. Consequently, the optical signal decreased. Our results showed that the limit of detection (LOD) of this system was 1.6 nM with excellent specificity, and that the detection signals were enhanced by up to 18 times under RCA conditions when compared with detections without RCA. This method has been successfully used to detect Hg2+ in water samples with a recovery of 98%-105.74%.
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Affiliation(s)
- Shijia Wu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, China; School of Food Science and Technology, Jiangnan University, Wuxi 214122, China; International Joint Laboratory on Food Safety, Jiangnan University, Wuxi 214122, China
| | - Qianru Yu
- School of Food Science and Technology, Jiangnan University, Wuxi 214122, China
| | - Chuxian He
- School of Food Science and Technology, Jiangnan University, Wuxi 214122, China
| | - Nuo Duan
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, China; School of Food Science and Technology, Jiangnan University, Wuxi 214122, China; International Joint Laboratory on Food Safety, Jiangnan University, Wuxi 214122, China.
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44
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Qi Y, Ma J, Chen X, Xiu FR, Chen Y, Lu Y. Practical aptamer-based assay of heavy metal mercury ion in contaminated environmental samples: convenience and sensitivity. Anal Bioanal Chem 2019; 412:439-448. [PMID: 31773229 DOI: 10.1007/s00216-019-02253-8] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2019] [Revised: 10/25/2019] [Accepted: 10/30/2019] [Indexed: 01/08/2023]
Abstract
Due to heavy metals' magnified pollution from their accumulation in the ecosystem, practical detection of ultra-low concentration of heavy metals in environmental sample is of great significance for environmental supervision and maintenance of people's health. Herein, a practical and sensitive assay of heavy metal mercury was developed by visually observing (or spectrum detecting) the change of cationic gold nanoparticles (AuNPs), which is directly caused by mercury ion induced hybridization between non-canonical base pairs. In this assay, signal probe's response was direct rather than the indirect salt induction, thus avoiding the defect of salt-induced indirect response. It makes the analysis more sensitive. The results showed that the response of 8.2 × 10-8 M Hg2+ could be observed with naked eye and the detection limit of Hg2+ in spectrometric determination was 4.9 × 10-11 M, which is more than one order of magnitude lower than that from indirect response pattern of signal probe. In addition, high specificity of the affinity chemistry for T-Hg-T renders the assay to be highly selective. Compared with the results of cold vapor atom adsorption spectroscopy (CVAAS), this analysis has good reliability for the detection of mercury. The results fully indicate that the developed assay is an ideal alternative for online detection of heavy metal mercury in environmental pollution samples.
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Affiliation(s)
- Yingying Qi
- College of Geology and Environment, Xi'an University of Science and Technology, Xi'an, 710054, Shaanxi, China. .,Shaanxi Provincial Key Laboratory of Geological Support for Coal Green Exploitation, Xi'an, 710054, Shaanxi, China.
| | - Jinxin Ma
- College of Geology and Environment, Xi'an University of Science and Technology, Xi'an, 710054, Shaanxi, China
| | - Xiandong Chen
- College of Geology and Environment, Xi'an University of Science and Technology, Xi'an, 710054, Shaanxi, China
| | - Fu-Rong Xiu
- College of Geology and Environment, Xi'an University of Science and Technology, Xi'an, 710054, Shaanxi, China.,Shaanxi Provincial Key Laboratory of Geological Support for Coal Green Exploitation, Xi'an, 710054, Shaanxi, China
| | - Yiting Chen
- College of Geology and Environment, Xi'an University of Science and Technology, Xi'an, 710054, Shaanxi, China
| | - Yongwei Lu
- College of Geology and Environment, Xi'an University of Science and Technology, Xi'an, 710054, Shaanxi, China
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45
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Hobbs RJ, Thomas CA, Halliwell J, Gwenin CD. Rapid Detection of Botulinum Neurotoxins-A Review. Toxins (Basel) 2019; 11:E418. [PMID: 31319550 PMCID: PMC6669533 DOI: 10.3390/toxins11070418] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Revised: 07/15/2019] [Accepted: 07/15/2019] [Indexed: 12/13/2022] Open
Abstract
A toxin is a poisonous substance produced within living cells or organisms. One of the most potent groups of toxins currently known are the Botulinum Neurotoxins (BoNTs). These are so deadly that as little as 62 ng could kill an average human; to put this into context that is approximately 200,000 × less than the weight of a grain of sand. The extreme toxicity of BoNTs leads to the need for methods of determining their concentration at very low levels of sensitivity. Currently the mouse bioassay is the most widely used detection method monitoring the activity of the toxin; however, this assay is not only lengthy, it also has both cost and ethical issues due to the use of live animals. This review focuses on detection methods both existing and emerging that remove the need for the use of animals and will look at three areas; speed of detection, sensitivity of detection and finally cost. The assays will have wide reaching interest, ranging from the pharmaceutical/clinical industry for production quality management or as a point of care sensor in suspected cases of botulism, the food industry as a quality control measure, to the military, detecting BoNT that has been potentially used as a bio warfare agent.
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Affiliation(s)
- Robert J Hobbs
- Applied Research in Chemistry and Health (ARCH) Research Group, School of Natural Sciences, Bangor University, Bangor, Gwynedd, Wales LL57 2UW, UK
| | - Carol A Thomas
- Applied Research in Chemistry and Health (ARCH) Research Group, School of Natural Sciences, Bangor University, Bangor, Gwynedd, Wales LL57 2UW, UK
| | - Jennifer Halliwell
- Applied Research in Chemistry and Health (ARCH) Research Group, School of Natural Sciences, Bangor University, Bangor, Gwynedd, Wales LL57 2UW, UK
| | - Christopher D Gwenin
- Applied Research in Chemistry and Health (ARCH) Research Group, School of Natural Sciences, Bangor University, Bangor, Gwynedd, Wales LL57 2UW, UK.
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46
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Anitha R, Rajarajeswari GR. Selective Detection of Sub-hundred Picomolar Mercuric Ion in Aqueous Systems by Visible Spectrophotometry Using Gripe Water Functionalized Gold Nanoparticles. J CLUST SCI 2019. [DOI: 10.1007/s10876-019-01549-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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47
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Park HJ, Lee SS. Strategic Approaches for Highly Selective and Sensitive Detection of Hg 2+ Ion Using Mass Sensitive Sensors. ANAL SCI 2019; 35:883-888. [PMID: 31006718 DOI: 10.2116/analsci.19p070] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Here we present a quartz crystal microbalance (QCM) sensor for the highly selective and sensitive detection of Hg2+ ion, a toxic chemical species and a hazardous environmental contaminant. Hg2+ ion can be quantitatively measured based on changes in the resonance frequency of QCM following mass changes on the QCM sensor surface. The high selectivity for Hg2+ ion in this study can be obtained using a thymine-Hg2+-thymine pair, which is more stable than the adenine-thymine base pair in DNA. On the other hand, gold nanoparticles (AuNPs) and their size-enhancement techniques were used to amplify the QCM signals to increase the sensitivity for Hg2+ ion. With this strategic approach, the proposed QCM sensor can be used to quantitatively analyze Hg2+ ion with high selectivity and sensitivity. The detection limit was as low as 98.7 pM. The sensor failed to work with other metal ions at concentrations 1000-times higher than that of the Hg2+ ion. Finally, the recovery does not exceed 10% of the original value for the detection of Hg2+ ion in tap and bottled water. The results indicate acceptable accuracy and precision for practical applications.
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Affiliation(s)
- Hyeoun Ji Park
- Department of Pharmaceutical Engineering, Soonchunhyang University
| | - Soo Suk Lee
- Department of Pharmaceutical Engineering, Soonchunhyang University
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48
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Jin H, Zhang M, Wei M, Cheng JH. A voltammetric biosensor for mercury(II) using reduced graphene oxide@gold nanorods and thymine-Hg(II)-thymine interaction. Mikrochim Acta 2019; 186:264. [DOI: 10.1007/s00604-019-3372-2] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2018] [Accepted: 03/20/2019] [Indexed: 01/19/2023]
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49
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Zhang Y, Lai BS, Juhas M. Recent Advances in Aptamer Discovery and Applications. Molecules 2019; 24:molecules24050941. [PMID: 30866536 PMCID: PMC6429292 DOI: 10.3390/molecules24050941] [Citation(s) in RCA: 339] [Impact Index Per Article: 67.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2019] [Revised: 03/03/2019] [Accepted: 03/04/2019] [Indexed: 12/22/2022] Open
Abstract
Aptamers are short, single-stranded DNA, RNA, or synthetic XNA molecules that can be developed with high affinity and specificity to interact with any desired targets. They have been widely used in facilitating discoveries in basic research, ensuring food safety and monitoring the environment. Furthermore, aptamers play promising roles as clinical diagnostics and therapeutic agents. This review provides update on the recent advances in this rapidly progressing field of research with particular emphasis on generation of aptamers and their applications in biosensing, biotechnology and medicine. The limitations and future directions of aptamers in target specific delivery and real-time detection are also discussed.
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Affiliation(s)
- Yang Zhang
- College of Science, Harbin Institute of Technology, Shenzhen 518055, China.
| | - Bo Shiun Lai
- School of Medicine, Johns Hopkins University, Baltimore, MD 21205, USA.
| | - Mario Juhas
- Institute of Medical Microbiology, University of Zurich, Gloriastrasse 28/30, CH-8006 Zurich, Switzerland.
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50
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De Acha N, Elosúa C, Corres JM, Arregui FJ. Fluorescent Sensors for the Detection of Heavy Metal Ions in Aqueous Media. SENSORS 2019; 19:s19030599. [PMID: 30708989 PMCID: PMC6386841 DOI: 10.3390/s19030599] [Citation(s) in RCA: 112] [Impact Index Per Article: 22.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Revised: 01/17/2019] [Accepted: 01/23/2019] [Indexed: 12/17/2022]
Abstract
Due to the risks that water contamination implies for human health and environmental protection, monitoring the quality of water is a major concern of the present era. Therefore, in recent years several efforts have been dedicated to the development of fast, sensitive, and selective sensors for the detection of heavy metal ions. In particular, fluorescent sensors have gained in popularity due to their interesting features, such as high specificity, sensitivity, and reversibility. Thus, this review is devoted to the recent advances in fluorescent sensors for the monitoring of these contaminants, and special focus is placed on those devices based on fluorescent aptasensors, quantum dots, and organic dyes.
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Affiliation(s)
- Nerea De Acha
- Department of Electric, Electronic and Communications Engineering, Public University of Navarra, E-31006 Pamplona, Spain.
| | - César Elosúa
- Department of Electric, Electronic and Communications Engineering, Public University of Navarra, E-31006 Pamplona, Spain.
- Institute of Smart Cities (ISC), Public University of Navarra, E-31006 Pamplona, Spain.
| | - Jesús M Corres
- Department of Electric, Electronic and Communications Engineering, Public University of Navarra, E-31006 Pamplona, Spain.
- Institute of Smart Cities (ISC), Public University of Navarra, E-31006 Pamplona, Spain.
| | - Francisco J Arregui
- Department of Electric, Electronic and Communications Engineering, Public University of Navarra, E-31006 Pamplona, Spain.
- Institute of Smart Cities (ISC), Public University of Navarra, E-31006 Pamplona, Spain.
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