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Dubey KK, Kumar A, Baldia A, Rajput D, Kateriya S, Singh R, Nikita, Tandon R, Mishra YK. Biomanufacturing of glycosylated antibodies: Challenges, solutions, and future prospects. Biotechnol Adv 2023; 69:108267. [PMID: 37813174 DOI: 10.1016/j.biotechadv.2023.108267] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 09/03/2023] [Accepted: 09/28/2023] [Indexed: 10/11/2023]
Abstract
Traditionally, recombinant protein production has been done in several expression hosts of bacteria, fungi, and majorly CHO (Chinese Hamster Ovary) cells; few have high production costs and are susceptible to harmful toxin contamination. Green algae have the potential to produce recombinant proteins in a more sustainable manner. Microalgal diversity leads to offer excellent opportunities to produce glycosylated antibodies. An antibody with humanized glycans plays a crucial role in cellular communication that works to regulate cells and molecules, to control disease, and to stimulate immunity. Therefore, it becomes necessary to understand the role of abiotic factors (light, temperature, pH, etc.) in the production of bioactive molecules and molecular mechanisms of product synthesis from microalgae which would lead to harnessing the potential of algal bio-refinery. However, the potential of microalgae as the source of bio-refinery has been less explored. In the present review, omics approaches for microalgal engineering, methods of humanized glycoproteins production focusing majorly on N-glycosylation pathways, light-based regulation of glycosylation machinery, and production of antibodies with humanized glycans in microalgae with a major emphasis on modulation of post-translation machinery of microalgae which might play a role in better understanding of microalgal potential as a source for antibody production along with future perspectives.
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Affiliation(s)
- Kashyap Kumar Dubey
- Biomanufacturing and Process Development Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India.
| | - Akshay Kumar
- Biomanufacturing and Process Development Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India
| | - Anshu Baldia
- Biomanufacturing and Process Development Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India
| | - Deepanshi Rajput
- Biomanufacturing and Process Development Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India
| | - Suneel Kateriya
- Laboratory of Optobiotechnology, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India
| | - Rajani Singh
- Laboratory of Optobiotechnology, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India
| | - Nikita
- Laboratory of AIDS Research and Immunology, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India
| | - Ravi Tandon
- Laboratory of AIDS Research and Immunology, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India
| | - Yogendra Kumar Mishra
- Mads Clausen Institute, NanoSYD, University of Southern Denmark, Alison 2, 6400 Sønderborg, Denmark.
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Machuca-Sepúlveda J, Miranda J, Lefin N, Pedroso A, Beltrán JF, Farias JG. Current Status of Omics in Biological Quality Elements for Freshwater Biomonitoring. BIOLOGY 2023; 12:923. [PMID: 37508354 PMCID: PMC10376755 DOI: 10.3390/biology12070923] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Revised: 06/01/2023] [Accepted: 06/02/2023] [Indexed: 07/30/2023]
Abstract
Freshwater ecosystems have been experiencing various forms of threats, mainly since the last century. The severity of this adverse scenario presents unprecedented challenges to human health, water supply, agriculture, forestry, ecological systems, and biodiversity, among other areas. Despite the progress made in various biomonitoring techniques tailored to specific countries and biotic communities, significant constraints exist, particularly in assessing and quantifying biodiversity and its interplay with detrimental factors. Incorporating modern techniques into biomonitoring methodologies presents a challenging topic with multiple perspectives and assertions. This review aims to present a comprehensive overview of the contemporary advancements in freshwater biomonitoring, specifically by utilizing omics methodologies such as genomics, metagenomics, transcriptomics, proteomics, metabolomics, and multi-omics. The present study aims to elucidate the rationale behind the imperative need for modernization in this field. This will be achieved by presenting case studies, examining the diverse range of organisms that have been studied, and evaluating the potential benefits and drawbacks associated with the utilization of these methodologies. The utilization of advanced high-throughput bioinformatics techniques represents a sophisticated approach that necessitates a significant departure from the conventional practices of contemporary freshwater biomonitoring. The significant contributions of omics techniques in the context of biological quality elements (BQEs) and their interpretations in ecological problems are crucial for biomonitoring programs. Such contributions are primarily attributed to the previously overlooked identification of interactions between different levels of biological organization and their responses, isolated and combined, to specific critical conditions.
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Affiliation(s)
- Jorge Machuca-Sepúlveda
- Doctoral Program on Natural Resources Sciences, Universidad de La Frontera, Avenida Francisco Salazar, 01145, P.O. Box 54-D, Temuco 4780000, Chile
- Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Temuco 4811230, Chile
| | - Javiera Miranda
- Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Temuco 4811230, Chile
| | - Nicolás Lefin
- Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Temuco 4811230, Chile
| | - Alejandro Pedroso
- Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Temuco 4811230, Chile
| | - Jorge F Beltrán
- Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Temuco 4811230, Chile
| | - Jorge G Farias
- Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Temuco 4811230, Chile
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Effects of Tetracycline on Scenedesmus obliquus Microalgae Photosynthetic Processes. Int J Mol Sci 2022; 23:ijms231810544. [PMID: 36142466 PMCID: PMC9504007 DOI: 10.3390/ijms231810544] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Revised: 09/06/2022] [Accepted: 09/07/2022] [Indexed: 11/17/2022] Open
Abstract
Tetracycline (TC) antibiotics can be detected worldwide in the aquatic environment due to their extensive use and low utilization efficiency, and they may affect the physiological processes of non-target organisms. In this study, the acute and sub-acute toxicities of TC on the freshwater microalga Scenedesmus obliquus were investigated with an emphasis on algal photosynthesis and transcription alterations during an 8 d TC exposure. The results showed that the IC10, IC30 and IC50 values were 1.8, 4.1 and 6.9 mg/L, respectively. During sub-acute exposure, the microalgae of the IC10 treatment was able to recover comparable growth to that of the control by day 7, while significantly lower cell densities were observed in the IC30 and IC50 treatments at the end of the exposure. The photosynthetic efficiency Fv/FM of S. obliquus first decreased as the TC concentration increased and then returned to a level close to that of the control on day 8, accompanied by an increase in photosynthetic activities, including light harvesting, electron transport and energy dissipation. Transcriptomic analysis of the IC10 treatment (1.8 mg/L TC) revealed that 2157 differentially expressed genes were up-regulated and 1629 were down-regulated compared with the control. KEGG and GO enrichments demonstrated that 28 photosynthesis-related genes involving light-harvesting chlorophyll protein complex, photosystem I, photosystem II, photosynthetic electron transport and enzymes were up-regulated, which may be the factor responsible for the enhanced photosynthesis and recovery of the microalgae. Our work may be helpful not only for gaining a better understanding of the environmental risk of TC at concentrations close to the real levels in natural waters, but also for explaining photosynthesis and related gene transcription induced by antibiotics.
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Pan-utai W, Iamtham S, Roytrakul S, Settachaimongkon S, Wattanasiritham LS, Boonbumrung S, Mookdasanit J, Sithtisarn S. Arthrospira platensis Mutagenesis for Protein and C-Phycocyanin Improvement and Proteomics Approaches. LIFE (BASEL, SWITZERLAND) 2022; 12:life12060911. [PMID: 35743942 PMCID: PMC9227609 DOI: 10.3390/life12060911] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 06/12/2022] [Accepted: 06/15/2022] [Indexed: 01/07/2023]
Abstract
Arthrospira (Spirulina) platensis is known for its use as a food supplement, with reported therapeutic properties including antiviral, anti-inflammatory and antioxidant activity. Arthrospira is also an excellent source of proteins and C-phycocyanin. The latter is a light-harvesting pigment-protein complex in cyanobacteria, located on the outer surface of the thylakoid membrane and comprising 40 to 60% of the total soluble protein in cells. Random mutagenesis is a useful tool as a non-genetically modified mutation method that has been widely used to generate mutants of different microorganisms. Exposure of microalgae or cyanobacteria to chemical stimuli affects their growth and many biological processes. Chemicals influence several proteins, including those involved in carbohydrate and energy metabolisms, photosynthesis and stress-related proteins (oxidative stress-reactive oxygen species (ROS) scavenging enzymes). Signal transduction pathways and ion transportation mechanisms are also impacted by chemical treatment, with changes causing the production of numerous biomolecules and stimulation of defence responses. This study compared the protein contents of A. platensis control and after mutagenesis using diethyl sulphate (DES) under various treatment concentrations for effective mutation of A. platensis. Results identified 1152 peptides using proteomics approaches. The proteins were classified into 23 functional categories. Random mutagenesis of A. platensis by DES was found to be highly effective for C-phycocyanin and protein production.
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Affiliation(s)
- Wanida Pan-utai
- Department of Applied Microbiology, Institute of Food Research and Product Development, Kasetsart University, Chatuchak, Bangkok 10900, Thailand;
- Correspondence:
| | - Siriluck Iamtham
- Department of Science, Faculty of Liberal Arts and Science, Kasetsart University, Kamphaeng Saen, Nakhon Pathom 73140, Thailand;
- Center for Agricultural Biotechnology, Kasetsart University, Kamphaeng Saen Campus, Nakhon Pathom 73140, Thailand
- Center of Excellence on Agricultural Biotechnology: (AG-BIO/PERDO-CHE), Bangkok 10900, Thailand
| | - Sittiruk Roytrakul
- Functional Ingredients and Food Innovation Research Group, National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Phahonyothin Rd., Pathum Thani 12120, Thailand;
| | - Sarn Settachaimongkon
- Department of Food Technology, Faculty of Science, Chulalongkorn University, Pathumwan, Bangkok 10330, Thailand;
| | - Ladda Sangduean Wattanasiritham
- Department of Food Chemistry and Physics, Institute of Food Research and Product Development, Kasetsart University, Chatuchak, Bangkok 10900, Thailand; (L.S.W.); (S.B.)
| | - Sumitra Boonbumrung
- Department of Food Chemistry and Physics, Institute of Food Research and Product Development, Kasetsart University, Chatuchak, Bangkok 10900, Thailand; (L.S.W.); (S.B.)
| | - Juta Mookdasanit
- Department of Fishery Products, Faculty of Fisheries, Kasetsart University, Chatuchak, Bangkok 10900, Thailand;
| | - Sayamon Sithtisarn
- Department of Applied Microbiology, Institute of Food Research and Product Development, Kasetsart University, Chatuchak, Bangkok 10900, Thailand;
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Sprecher BN, Zhang H, Park G, Lin S. Isolation from a fish kill and transcriptomic characterization of Gyrodinium jinhaense off Long Island Sound. HARMFUL ALGAE 2021; 110:102136. [PMID: 34887013 DOI: 10.1016/j.hal.2021.102136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 11/01/2021] [Accepted: 11/08/2021] [Indexed: 06/13/2023]
Abstract
First found in Korean coastal water, the dinoflagellate Gyrodinium jinhaense is a recently established species with unclear global distribution and unexplored genomic characteristics. From a laboratory fish mortality event off Long Island Sound, USA, we isolated a dinoflagellate, and by microscopic and molecular (18S rRNA gene; >99% identical) analyses found that it resembles G. jinhaense, hence named G. jinhaense strain AP17. Towards developing a genetic database for this dinoflagellate, a transcriptome of this species was sequenced using RNA-seq, producing 6 Gbp of data that was assembled into over 70,000 unigenes. The assembled transcriptome GC content was approximately 56% and the total Benchmarking Universal Single-Copy Orthologs for Eukaryota and Alveolata databases were approximately 50% and 57%, respectfully. Genes involved in grazing, energy generation, genome architecture, and protein synthesis, processing, and degradation were highly represented in the transcriptome. Moreover, fragments of polyketide synthase and saxitoxin genes were found but saxitoxins were not detected in high performance liquid chromatography measurements. With the first reported transcriptome for the Gyrodinium genus, this study will serve as a baseline for future Gyrodinium genomics and toxicological studies.
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Affiliation(s)
- Brittany N Sprecher
- University of Connecticut Avery Point, 1084 Shennecossett Rd, Groton, CT 06340, United States; Current Address - University of Konstanz, Universitätsstraße 10, 78462 Konstanz, Germany.
| | - Huan Zhang
- University of Connecticut Avery Point, 1084 Shennecossett Rd, Groton, CT 06340, United States
| | - Gihong Park
- University of Connecticut Avery Point, 1084 Shennecossett Rd, Groton, CT 06340, United States
| | - Senjie Lin
- University of Connecticut Avery Point, 1084 Shennecossett Rd, Groton, CT 06340, United States.
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Persson A, Smith BC, Alix JH, Li Y, Holohan BA, Wikfors GH. Differences in Specific Mass Density Between Dinoflagellate Life Stages and Relevance to Accumulation by Hydrodynamic Processes. JOURNAL OF PHYCOLOGY 2021; 57:1492-1503. [PMID: 33960400 PMCID: PMC8596432 DOI: 10.1111/jpy.13181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Accepted: 03/31/2021] [Indexed: 06/12/2023]
Abstract
One previously unstudied aspect of differences between sexual and asexual life stages in large-scale transport and accumulation is density (mass per unit volume) of cells in each life stage. The specific density was determined for Scrippsiella lachrymosa cells in medium with and without nitrogen (N) enrichment through density-gradient centrifugation. Growth medium without N addition is often called "encystment medium" when used for the purpose of resting cyst formation in cyst-forming dinoflagellates; mating gametes are usually seen after 2-3 days. Significant differences in specific density were found after 2 days in encystment medium simultaneously with the observation of typical gamete swimming behavior and mating. The specific density of cells in encystment medium was 1.06 g · cm-3 ; whereas, the specific density of cells in growth medium was 1.11 g · cm-3 . Cells in encystment medium were found to have significantly increased lipid content, reduced chlorophyll content, and reduced internal complexity. The findings may explain differential transport of less dense and chemotactically aggregating gametes into surface blooms in contrast to denser vegetative cells that perform daily vertical migration and do not aggregate. Passive accumulation of non-migrating gametes into layers in stagnant water also can be explained, as well as sinking of zygotes when the storage of highly dense starch increases. Resting cysts had a density of over 1.14 g · cm-3 and would sink to become part of the silt fraction of the sediment. We suggest that differences in behavior and buoyancy between sexual and asexual life stages cause differences in cell accumulation, and therefore large-scale, environmental transport could be directly dependent upon life-cycle transitions.
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Affiliation(s)
- Agneta Persson
- Department of Biological and Environmental SciencesGöteborg UniversityBox 461405 30GöteborgSweden
- Smedjebacksvägen 13SE‐771 90LudvikaSweden
| | - Barry C. Smith
- National Oceanic and Atmospheric AdministrationNational Marine Fisheries ServiceNortheast Fisheries Science CenterMilford Laboratory212 Rogers AvenueMilfordConnecticut06460USA
| | - Jennifer H. Alix
- National Oceanic and Atmospheric AdministrationNational Marine Fisheries ServiceNortheast Fisheries Science CenterMilford Laboratory212 Rogers AvenueMilfordConnecticut06460USA
| | - Yaqin Li
- National Oceanic and Atmospheric AdministrationNational Marine Fisheries ServiceNortheast Fisheries Science CenterMilford Laboratory212 Rogers AvenueMilfordConnecticut06460USA
| | - Bridget A. Holohan
- Department of Marine SciencesUniversity of Connecticut1080 Shennecossett RoadGrotonConnecticut06340USA
| | - Gary H. Wikfors
- National Oceanic and Atmospheric AdministrationNational Marine Fisheries ServiceNortheast Fisheries Science CenterMilford Laboratory212 Rogers AvenueMilfordConnecticut06460USA
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Sirohi R, Joun J, Choi HI, Gaur VK, Sim SJ. Algal glycobiotechnology: omics approaches for strain improvement. Microb Cell Fact 2021; 20:163. [PMID: 34419059 PMCID: PMC8379821 DOI: 10.1186/s12934-021-01656-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 08/12/2021] [Indexed: 12/18/2022] Open
Abstract
Microalgae has the capability to replace petroleum-based fuels and is a promising option as an energy feedstock because of its fast growth, high photosynthetic capacity and remarkable ability to store energy reserve molecules in the form of lipids and starch. But the commercialization of microalgae based product is difficult due to its high processing cost and low productivity. Higher accumulation of these molecules may help to cut the processing cost. There are several reports on the use of various omics techniques to improve the strains of microalgae for increasing the productivity of desired products. To effectively use these techniques, it is important that the glycobiology of microalgae is associated to omics approaches to essentially give rise to the field of algal glycobiotechnology. In the past few decades, lot of work has been done to improve the strain of various microalgae such as Chlorella, Chlamydomonas reinhardtii, Botryococcus braunii etc., through genome sequencing and metabolic engineering with major focus on significantly increasing the productivity of biofuels, biopolymers, pigments and other products. The advancements in algae glycobiotechnology have highly significant role to play in innovation and new developments for the production algae-derived products as above. It would be highly desirable to understand the basic biology of the products derived using -omics technology together with biochemistry and biotechnology. This review discusses the potential of different omic techniques (genomics, transcriptomics, proteomics, metabolomics) to improve the yield of desired products through algal strain manipulation.
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Affiliation(s)
- Ranjna Sirohi
- Department of Chemical & Biological Engineering, Korea University, Seoul, 136713, Republic of Korea
| | - Jaemin Joun
- Department of Chemical & Biological Engineering, Korea University, Seoul, 136713, Republic of Korea
| | - Hong Ii Choi
- Department of Chemical & Biological Engineering, Korea University, Seoul, 136713, Republic of Korea
| | - Vivek Kumar Gaur
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow Campus, Lucknow, 226 001, India
| | - Sang Jun Sim
- Department of Chemical & Biological Engineering, Korea University, Seoul, 136713, Republic of Korea.
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Jiao K, Xiao W, Shi X, Ho SH, Chang JS, Ng IS, Tang X, Sun Y, Zeng X, Lin L. Molecular mechanism of arachidonic acid biosynthesis in Porphyridium purpureum promoted by nitrogen limitation. Bioprocess Biosyst Eng 2021; 44:1491-1499. [PMID: 33710454 DOI: 10.1007/s00449-021-02533-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2020] [Accepted: 02/07/2021] [Indexed: 11/26/2022]
Abstract
The red alga Porphyridium purpureum has been known to produce polyunsaturated fatty acids, especially arachidonic acid (ARA), under stressful conditions. However, there is no consistent conclusion about the response of ARA in this alga to nitrogen (N) stress. Also, no research has been done to clearly elucidate the underlying molecular mechanisms of N stress. In this work, P. purpureum CoE1 was cultivated under nitrogen limitation conditions and the putative Δ5-desaturase related gene FADSD5 was isolated. The results showed that the fatty acids in P. purpureum CoE1 were significantly higher in the N limited cultures (54.3 mg g-1) than in the N-replete cultures (45.3 mg g-1) at the 18th day (t-test, p < 0.001), which was attributed to the upregulated abundance of the putative Δ5-desaturase related protein, Δ5-Des. The study also indicated that the expression of the putative Δ5-desaturase related gene, FADSD5, increased with cell growth, demonstrating considerable potentials for ARA biosynthesis in P. purpureum CoE1. These results might guide the direction in illuminating the biosynthetic pathway of fatty acids with molecular evidence and enable genetic modifications of P. purpureum CoE1 for enhancing the ARA accumulation.
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Affiliation(s)
- Kailin Jiao
- College of Energy, Xiamen University, Xiamen, 361102, People's Republic of China
- College of Chemistry and Environment, Minnan Normal University, Zhangzhou, 363000, China
| | - Wupeng Xiao
- State Key Laboratory of Marine Environmental Science/Fujian Provincial Key Laboratory for Coastal Ecology and Environmental Studies, College of the Environment and Ecology, Xiamen University, Xiamen, 361102, China
| | - Xingguo Shi
- College of Biological Science and Engineering, Fuzhou University, Fujian, 350116, China
| | - Shih-Hsin Ho
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150006, China
| | - Jo-Shu Chang
- Department of Chemical Engineering, National Cheng Kung University, Tainan, 70101, Taiwan, People's Republic of China
| | - I-Son Ng
- Department of Chemical Engineering, National Cheng Kung University, Tainan, 70101, Taiwan, People's Republic of China
| | - Xing Tang
- College of Energy, Xiamen University, Xiamen, 361102, People's Republic of China
- Fujian Engineering and Research Center of Clean and High‑Valued Conversion Technology for Biomass, Xiamen Key Laboratory of Clean and High‑valued Conversion Technology of Biomass, Xiamen University, Xiamen, 361102, China
| | - Yong Sun
- College of Energy, Xiamen University, Xiamen, 361102, People's Republic of China
- Fujian Engineering and Research Center of Clean and High‑Valued Conversion Technology for Biomass, Xiamen Key Laboratory of Clean and High‑valued Conversion Technology of Biomass, Xiamen University, Xiamen, 361102, China
| | - Xianhai Zeng
- College of Energy, Xiamen University, Xiamen, 361102, People's Republic of China.
- Fujian Engineering and Research Center of Clean and High‑Valued Conversion Technology for Biomass, Xiamen Key Laboratory of Clean and High‑valued Conversion Technology of Biomass, Xiamen University, Xiamen, 361102, China.
| | - Lu Lin
- College of Energy, Xiamen University, Xiamen, 361102, People's Republic of China
- Fujian Engineering and Research Center of Clean and High‑Valued Conversion Technology for Biomass, Xiamen Key Laboratory of Clean and High‑valued Conversion Technology of Biomass, Xiamen University, Xiamen, 361102, China
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Geffroy S, Lechat MM, Le Gac M, Rovillon GA, Marie D, Bigeard E, Malo F, Amzil Z, Guillou L, Caruana AMN. From the sxtA4 Gene to Saxitoxin Production: What Controls the Variability Among Alexandrium minutum and Alexandrium pacificum Strains? Front Microbiol 2021; 12:613199. [PMID: 33717003 PMCID: PMC7944994 DOI: 10.3389/fmicb.2021.613199] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2020] [Accepted: 02/03/2021] [Indexed: 12/22/2022] Open
Abstract
Paralytic shellfish poisoning (PSP) is a human foodborne syndrome caused by the consumption of shellfish that accumulate paralytic shellfish toxins (PSTs, saxitoxin group). In PST-producing dinoflagellates such as Alexandrium spp., toxin synthesis is encoded in the nuclear genome via a gene cluster (sxt). Toxin production is supposedly associated with the presence of a 4th domain in the sxtA gene (sxtA4), one of the core genes of the PST gene cluster. It is postulated that gene expression in dinoflagellates is partially constitutive, with both transcriptional and post-transcriptional processes potentially co-occurring. Therefore, gene structure and expression mode are two important features to explore in order to fully understand toxin production processes in dinoflagellates. In this study, we determined the intracellular toxin contents of twenty European Alexandrium minutum and Alexandrium pacificum strains that we compared with their genome size and sxtA4 gene copy numbers. We observed a significant correlation between the sxtA4 gene copy number and toxin content, as well as a moderate positive correlation between the sxtA4 gene copy number and genome size. The 18 toxic strains had several sxtA4 gene copies (9-187), whereas only one copy was found in the two observed non-toxin producing strains. Exploration of allelic frequencies and expression of sxtA4 mRNA in 11 A. minutum strains showed both a differential expression and specific allelic forms in the non-toxic strains compared with the toxic ones. Also, the toxic strains exhibited a polymorphic sxtA4 mRNA sequence between strains and between gene copies within strains. Finally, our study supported the hypothesis of a genetic determinism of toxin synthesis (i.e., the existence of several genetic isoforms of the sxtA4 gene and their copy numbers), and was also consistent with the hypothesis that constitutive gene expression and moderation by transcriptional and post-transcriptional regulation mechanisms are the cause of the observed variability in the production of toxins by A. minutum.
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Affiliation(s)
| | | | | | | | - Dominique Marie
- Sorbonne Université, CNRS, UMR 7144 Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Roscoff, France
| | - Estelle Bigeard
- Sorbonne Université, CNRS, UMR 7144 Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Roscoff, France
| | | | | | - Laure Guillou
- Sorbonne Université, CNRS, UMR 7144 Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Roscoff, France
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Subong BJJ, Lluisma AO, Azanza RV, Salvador-Reyes LA. Differentiating Two Closely Related Alexandrium Species Using Comparative Quantitative Proteomics. Toxins (Basel) 2020; 13:toxins13010007. [PMID: 33374829 PMCID: PMC7823455 DOI: 10.3390/toxins13010007] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2020] [Revised: 12/16/2020] [Accepted: 12/17/2020] [Indexed: 01/21/2023] Open
Abstract
Alexandrium minutum and Alexandrium tamutum are two closely related harmful algal bloom (HAB)-causing species with different toxicity. Using isobaric tags for relative and absolute quantitation (iTRAQ)-based quantitative proteomics and two-dimensional differential gel electrophoresis (2D-DIGE), a comprehensive characterization of the proteomes of A. minutum and A. tamutum was performed to identify the cellular and molecular underpinnings for the dissimilarity between these two species. A total of 1436 proteins and 420 protein spots were identified using iTRAQ-based proteomics and 2D-DIGE, respectively. Both methods revealed little difference (10-12%) between the proteomes of A. minutum and A. tamutum, highlighting that these organisms follow similar cellular and biological processes at the exponential stage. Toxin biosynthetic enzymes were present in both organisms. However, the gonyautoxin-producing A. minutum showed higher levels of osmotic growth proteins, Zn-dependent alcohol dehydrogenase and type-I polyketide synthase compared to the non-toxic A. tamutum. Further, A. tamutum had increased S-adenosylmethionine transferase that may potentially have a negative feedback mechanism to toxin biosynthesis. The complementary proteomics approach provided insights into the biochemistry of these two closely related HAB-causing organisms. The identified proteins are potential biomarkers for organismal toxicity and could be explored for environmental monitoring.
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Affiliation(s)
- Bryan John J Subong
- Marine Science Institute, University of the Philippines- Diliman, Velasquez Street, Quezon City 1101, Philippines
- Department of Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo City, Tokyo 113-8654, Japan
| | - Arturo O Lluisma
- Marine Science Institute, University of the Philippines- Diliman, Velasquez Street, Quezon City 1101, Philippines
| | - Rhodora V Azanza
- Marine Science Institute, University of the Philippines- Diliman, Velasquez Street, Quezon City 1101, Philippines
| | - Lilibeth A Salvador-Reyes
- Marine Science Institute, University of the Philippines- Diliman, Velasquez Street, Quezon City 1101, Philippines
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11
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Zhao G, Wu D, Cao S, Du W, Yin Y, Guo H. Effects of CeO 2 Nanoparticles on Microcystis aeruginosa Growth and Microcystin Production. BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2020; 104:834-839. [PMID: 32306073 DOI: 10.1007/s00128-020-02842-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2019] [Accepted: 03/30/2020] [Indexed: 06/11/2023]
Abstract
The interaction between metal oxide nanoparticles and toxin-producing cyanobacteria is relatively unknown. The present work exposed Microcystis sp.7806 to different concentrations of cerium oxide nanoparticles (CeO2 NPs) (1 mg/L, 10 mg/L and 50 mg/L), and evaluated the growth, photosynthetic activity, reactive oxygen species level, and the extra-(intra-) cellular microcystin-LR (MC-LR) contents. The particle size, zeta potential and cerium ions released into the medium were analyzed. Results showed 10 mg/L NP treatment promoted algae growth but slightly inhibited the photosynthetic yield of algae, and the 50 mg/L treatment reduced algae biomass. The algal cells remarkably responded to oxidative stress at higher concentrations (10 mg/L and 50 mg/L). CeO2 NPs largely increased the intracellular MC-LR content at 50 mg/L, and significantly reduced the extracellular MC-LR content at any concentration. This demonstrates CeO2 NPs may pose an ecological risk potential during harmful algal blooms by stimulating toxin production.
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Affiliation(s)
- Guiqi Zhao
- State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing, 210023, China
| | - Di Wu
- State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing, 210023, China
| | - Shenglai Cao
- State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing, 210023, China
| | - Wenchao Du
- School of Environment, Nanjing Normal University, Nanjing, 210023, China
| | - Ying Yin
- State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing, 210023, China.
| | - Hongyan Guo
- State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing, 210023, China
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12
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Sprecher BN, Zhang H, Lin S. Nuclear Gene Transformation in the Dinoflagellate Oxyrrhis marina. Microorganisms 2020; 8:E126. [PMID: 31963386 PMCID: PMC7022241 DOI: 10.3390/microorganisms8010126] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2019] [Revised: 01/10/2020] [Accepted: 01/14/2020] [Indexed: 11/16/2022] Open
Abstract
The lack of a robust gene transformation tool that allows proper expression of foreign genes and functional testing for the vast number of nuclear genes in dinoflagellates has greatly hampered our understanding of the fundamental biology in this ecologically important and evolutionarily unique lineage of microeukaryotes. Here, we report the development of a dinoflagellate expression vector containing various DNA elements from phylogenetically separate dinoflagellate lineages, an electroporation protocol, and successful expression of introduced genes in an early branching dinoflagellate, Oxyrrhis marina. This protocol, involving the use of Lonza's Nucleofector and a codon-optimized antibiotic resistance gene, has been successfully used to produce consistent results in several independent experiments for O. marina. It is anticipated that this protocol will be adaptable for other dinoflagellates and will allow characterization of many novel dinoflagellate genes.
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Affiliation(s)
| | - Huan Zhang
- Department of Marine Sciences, University of Connecticut, 1080 Shennecossett Rd, Groton, CT 06340, USA;
| | - Senjie Lin
- Department of Marine Sciences, University of Connecticut, 1080 Shennecossett Rd, Groton, CT 06340, USA;
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13
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Zhang H, He YB, Wu PF, Zhang SF, Xie ZX, Li DX, Lin L, Chen F, Wang DZ. Functional Differences in the Blooming Phytoplankton Heterosigma akashiwo and Prorocentrum donghaiense Revealed by Comparative Metaproteomics. Appl Environ Microbiol 2019; 85:e01425-19. [PMID: 31375486 PMCID: PMC6752027 DOI: 10.1128/aem.01425-19] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Accepted: 07/07/2019] [Indexed: 12/21/2022] Open
Abstract
Phytoplankton blooms are natural phenomena in the ocean, which are the results of rapid cell growth of some phytoplankton species in a unique environment. However, little is known about the molecular events occurring during the bloom. Here, we compared metaproteomes of two phytoplankton Heterosigma akashiwo and Prorocentrum donghaiense in the coastal East China Sea. H. akashiwo and P. donghaiense accounted for 7.82% and 4.74% of the phytoplankton community protein abundances in the nonbloom sample, whereas they contributed to 60.13% and 78.09%, respectively, in their individual blooming samples. Compared with P. donghaiense, H. akashiwo possessed a significantly higher abundance of light-harvesting complex proteins, carbonic anhydrasem and RuBisCO. The blooming H. akashiwo cells expressed more proteins related to external nutrient acquisition, such as bicarbonate transporter SLC4, ammonium transporter, nitrite transporter, and alkaline phosphatase, while the blooming P. donghaiense cells highly expressed proteins related to extra- and intracellular organic nutrient utilization, such as amino acid transporter, 5'-nucleotidase, acid phosphatase, and tripeptidyl-peptidase. The strong capabilities of light harvesting, as well as acquisition and assimilation of inorganic carbon, nitrogen, and phosphorus, facilitated the formation of the H. akashiwo bloom under the high turbidity and inorganic nutrient-sufficient condition, whereas the competitive advantages in organic nutrient acquisition and reallocation guaranteed the occurrence of the P. donghaiense bloom under the inorganic nutrient-insufficient condition. This study highlights the power of metaproteomics for revealing the underlying molecular behaviors of different coexisting phytoplankton species and advances our knowledge on the formation of phytoplankton blooms.IMPORTANCE A deep understanding of the mechanisms driving bloom formation is a prerequisite for effective bloom management. Metaproteomics was applied in this study to reveal the adaptive and responsive strategies of two coexisting phytoplankton species, H. akashiwo and P. donghaiense, during their bloom periods. Metabolic features and niche divergence in light harvesting, as well as carbon, nitrogen, and phosphorus acquisition and assimilation likely promoted the bloom occurrence under different environments. The molecular behaviors of coexisting bloom-causing species will give clues for bloom monitoring and management in the oceans.
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Affiliation(s)
- Hao Zhang
- State Key Laboratory of Marine Environmental Science/College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Yan-Bin He
- BGI-Shenzhen, Shenzhen, Guangdong, China
| | - Peng-Fei Wu
- State Key Laboratory of Marine Environmental Science/College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Shu-Feng Zhang
- State Key Laboratory of Marine Environmental Science/College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Zhang-Xian Xie
- State Key Laboratory of Marine Environmental Science/College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Dong-Xu Li
- State Key Laboratory of Marine Environmental Science/College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Lin Lin
- State Key Laboratory of Marine Environmental Science/College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Feng Chen
- Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, Baltimore, Maryland, USA
| | - Da-Zhi Wang
- State Key Laboratory of Marine Environmental Science/College of the Environment and Ecology, Xiamen University, Xiamen, China
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14
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Liu J, Yang C, Chi Y, Wu D, Dai X, Zhang X, Igarashi Y, Luo F. Algicidal characterization and mechanism of Bacillus licheniformis
Sp34 against Microcystis aeruginosa
in Dianchi Lake. J Basic Microbiol 2019; 59:1112-1124. [DOI: 10.1002/jobm.201900112] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2019] [Revised: 06/26/2019] [Accepted: 07/25/2019] [Indexed: 12/13/2022]
Affiliation(s)
- Jinyu Liu
- Chongqing Key Laboratory, Research Center of Bioenergy and Bioremediation, College of Resources and Environment; Southwest University; Chongqing China
| | - Caiyun Yang
- Chongqing Key Laboratory, Research Center of Bioenergy and Bioremediation, College of Resources and Environment; Southwest University; Chongqing China
| | - Yuxin Chi
- Chongqing Key Laboratory, Research Center of Bioenergy and Bioremediation, College of Resources and Environment; Southwest University; Chongqing China
| | - Donghao Wu
- Chongqing Key Laboratory, Research Center of Bioenergy and Bioremediation, College of Resources and Environment; Southwest University; Chongqing China
| | - Xianzhu Dai
- Chongqing Key Laboratory, Research Center of Bioenergy and Bioremediation, College of Resources and Environment; Southwest University; Chongqing China
| | - Xiaohui Zhang
- Chongqing Key Laboratory, Research Center of Bioenergy and Bioremediation, College of Resources and Environment; Southwest University; Chongqing China
| | - Yasuo Igarashi
- Chongqing Key Laboratory, Research Center of Bioenergy and Bioremediation, College of Resources and Environment; Southwest University; Chongqing China
| | - Feng Luo
- Chongqing Key Laboratory, Research Center of Bioenergy and Bioremediation, College of Resources and Environment; Southwest University; Chongqing China
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15
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Park M, Lee Y, Khan A, Aleta P, Cho Y, Park H, Park YH, Kim S. Metabolite tracking to elucidate the effects of environmental pollutants. JOURNAL OF HAZARDOUS MATERIALS 2019; 376:112-124. [PMID: 31128390 DOI: 10.1016/j.jhazmat.2019.05.024] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2018] [Revised: 04/30/2019] [Accepted: 05/11/2019] [Indexed: 06/09/2023]
Abstract
The purpose of this study was to determine whether behavioral tests and metabolic profiling of organisms can be promising alternatives for assessing the health of aquatic systems. Water samples from four potential pollution sources in South Korea were collected for toxicity evaluation. First, conventional acute toxicity test in Daphnia magna and behavioral test in zebrafish was conducted to assess water quality. Second, metabolomic analysis was performed on zebrafish exposed to water samples and on environmental fish collected from the same source. Acute toxicity test in D. magna showed that none of the water samples exerted significant adverse effects. However, activity of zebrafish larvae exposed to samples from the zinc smelter (ZS) and industrial complex (IND) sites decreased compared to those exposed to samples from the reference site (RS). Metabolomic analysis using the Manhattan plot and Partial Least Square (PLS)/Orthogonal PLS Discriminant Analysis (OPLS-DA) showed differences in metabolic profiles between RS and ZS, and between IND and abandoned mine site (M). Interestingly, applying the same metabolomic analysis to environmental fish revealed patterns similar to those for zebrafish, despite the uncontrollable variables involved in environmental sampling. This study shows that metabolomics is a promising tool in assessing the health of aquatic environments.
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Affiliation(s)
- Minseung Park
- Bio Monitoring Laboratory, Program in Environmental Technology and Policy, Korea University Sejong Campus, 2511 Sejong-ro, Sejong City, Chungnam 30019, Republic of Korea
| | - Yeseung Lee
- Metabolomics Laboratory, College of Pharmacy, Korea University Sejong Campus, 2511 Sejong-ro, Sejong City, Chungnam 30019, Republic of Korea
| | - Adnan Khan
- Metabolomics Laboratory, College of Pharmacy, Korea University Sejong Campus, 2511 Sejong-ro, Sejong City, Chungnam 30019, Republic of Korea
| | - Prince Aleta
- Bio Monitoring Laboratory, Program in Environmental Technology and Policy, Korea University Sejong Campus, 2511 Sejong-ro, Sejong City, Chungnam 30019, Republic of Korea
| | - Yunchul Cho
- Department of Environmental Engineering, Daejeon University, 62 Daehak-ro, Dong-gu, Daejeon 300-716, Republic of Korea
| | | | - Youngja Hwang Park
- Metabolomics Laboratory, College of Pharmacy, Korea University Sejong Campus, 2511 Sejong-ro, Sejong City, Chungnam 30019, Republic of Korea.
| | - Sungpyo Kim
- Bio Monitoring Laboratory, Program in Environmental Technology and Policy, Korea University Sejong Campus, 2511 Sejong-ro, Sejong City, Chungnam 30019, Republic of Korea.
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16
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Sotton B, Paris A, Le Manach S, Blond A, Duval C, Qiao Q, Catherine A, Combes A, Pichon V, Bernard C, Marie B. Specificity of the metabolic signatures of fish from cyanobacteria rich lakes. CHEMOSPHERE 2019; 226:183-191. [PMID: 30927670 DOI: 10.1016/j.chemosphere.2019.03.115] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Revised: 03/15/2019] [Accepted: 03/16/2019] [Indexed: 06/09/2023]
Abstract
With the increasing impact of the global warming, occurrences of cyanobacterial blooms in aquatic ecosystems are becoming a main worldwide ecological concern. Due to their capacity to produce potential toxic metabolites, interactions between the cyanobacteria, their cyanotoxins and the surrounding freshwater organisms have been investigated during the last past years. Non-targeted metabolomic analyses have the powerful capacity to study simultaneously a high number of metabolites and thus to investigate in depth the molecular signatures between various organisms encountering different environmental scenario, and potentially facing cyanobacterial blooms. In this way, the liver metabolomes of two fish species (Perca fluviatilis and Lepomis gibbosus) colonizing various peri-urban lakes of the Île-de-France region displaying high biomass of cyanobacteria, or not, were investigated. The fish metabolome hydrophilic fraction was analyzed by 1H NMR analysis coupled with Batman peak treatment for the quantification and the annotation attempt of the metabolites. The results suggest that similar metabolome profiles occur in both fish species, for individuals collected from cyanobacterial blooming lakes compared to organism from non-cyanobacterial dominant environments. Overall, such environmental metabolomic pilot study provides new research perspectives in ecology and ecotoxicology fields, and may notably provide new information concerning the cyanobacteria/fish ecotoxicological interactions.
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Affiliation(s)
- Benoît Sotton
- UMR 7245 MNHN/CNRS Molécules de Communication et Adaptation des Microorganismes, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231, Paris Cedex 05, France
| | - Alain Paris
- UMR 7245 MNHN/CNRS Molécules de Communication et Adaptation des Microorganismes, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231, Paris Cedex 05, France
| | - Séverine Le Manach
- UMR 7245 MNHN/CNRS Molécules de Communication et Adaptation des Microorganismes, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231, Paris Cedex 05, France
| | - Alain Blond
- UMR 7245 MNHN/CNRS Molécules de Communication et Adaptation des Microorganismes, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231, Paris Cedex 05, France
| | - Charlotte Duval
- UMR 7245 MNHN/CNRS Molécules de Communication et Adaptation des Microorganismes, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231, Paris Cedex 05, France
| | - Qin Qiao
- UMR 7245 MNHN/CNRS Molécules de Communication et Adaptation des Microorganismes, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231, Paris Cedex 05, France
| | - Arnaud Catherine
- UMR 7245 MNHN/CNRS Molécules de Communication et Adaptation des Microorganismes, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231, Paris Cedex 05, France
| | - Audrey Combes
- Department of Analytical, Bioanalytical Sciences and Miniaturization (LSABM), UMR CNRS-ESPCI Paris, CBI 8231, PSL Research University, ESPCI Paris, 10 rue Vauquelin, Paris, France
| | - Valérie Pichon
- Department of Analytical, Bioanalytical Sciences and Miniaturization (LSABM), UMR CNRS-ESPCI Paris, CBI 8231, PSL Research University, ESPCI Paris, 10 rue Vauquelin, Paris, France
| | - Cécile Bernard
- UMR 7245 MNHN/CNRS Molécules de Communication et Adaptation des Microorganismes, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231, Paris Cedex 05, France
| | - Benjamin Marie
- UMR 7245 MNHN/CNRS Molécules de Communication et Adaptation des Microorganismes, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231, Paris Cedex 05, France.
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17
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Abstract
Metabolomics is valuable for studying microbial metabolism, which is often used to elucidate biological functions. Effective application of metabolomics is enhanced by fundamental understanding of microbial physiology and metabolism. This review briefly highlights important aspects of metabolism that are essential for designing and executing effective metabolic and metabolomics studies. The influence of microbial physiology and metabolism on growth, energy metabolism and regulation is briefly reviewed. The chapter also evaluates factors affecting metabolic prediction.
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Affiliation(s)
- Chijioke J Joshua
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
- Joint BioEnergy Institute, Emeryville, CA, USA.
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18
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Understanding the nitrogen uptake and assimilation of the Chinese strain of Aureococcus anophagefferens (Pelagophyceae). ALGAL RES 2018. [DOI: 10.1016/j.algal.2018.07.019] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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19
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Sotton B, Paris A, Le Manach S, Blond A, Lacroix G, Millot A, Duval C, Qiao Q, Catherine A, Marie B. Global metabolome changes induced by cyanobacterial blooms in three representative fish species. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 590-591:333-342. [PMID: 28283295 DOI: 10.1016/j.scitotenv.2017.03.016] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2016] [Revised: 02/27/2017] [Accepted: 03/02/2017] [Indexed: 06/06/2023]
Abstract
Cyanobacterial blooms induce important ecological constraints for aquatic organisms and strongly impact the functioning of aquatic ecosystems. In the past decades, the effects of the cyanobacterial secondary metabolites, so called cyanotoxins, have been extensively studied in fish. However, many of these studies have used targeted approaches on specific molecules, which are thought to react to the presence of these specific cyanobacterial compounds. Since a few years, untargeted metabolomic approaches provide a unique opportunity to evaluate the global response of hundreds of metabolites at a glance. In this way, our study provides the first utilization of metabolomic analyses in order to identify the response of fish exposed to bloom-forming cyanobacteria. Three relevant fish species of peri-urban lakes of the European temperate regions were exposed for 96h either to a microcystin (MC)-producing or to a non-MC-producing strain of Microcystis aeruginosa and metabolome changes were characterized in the liver of fish. The results suggest that a short-term exposure to those cyanobacterial biomasses induces metabolome changes without any response specificity linked to the fish species considered. Candidate metabolites are involved in energy metabolism and antioxidative response, which could potentially traduce a stress response of fish submitted to cyanobacteria. These results are in agreement with the already known information and could additionally bring new insights about the molecular interactions between cyanobacteria and fish.
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Affiliation(s)
- Benoît Sotton
- UMR 7245 MNHN/CNRS Molécules de communication et adaptation des microorganismes, équipe Cyanobactéries, Cyanotoxines et Environnement, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231 Paris Cedex 05, France..
| | - Alain Paris
- UMR 7245 MNHN/CNRS Molécules de communication et adaptation des microorganismes, équipe Cyanobactéries, Cyanotoxines et Environnement, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231 Paris Cedex 05, France
| | - Séverine Le Manach
- UMR 7245 MNHN/CNRS Molécules de communication et adaptation des microorganismes, équipe Cyanobactéries, Cyanotoxines et Environnement, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231 Paris Cedex 05, France
| | - Alain Blond
- UMR 7245 MNHN/CNRS Molécules de communication et adaptation des microorganismes, équipe Cyanobactéries, Cyanotoxines et Environnement, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231 Paris Cedex 05, France
| | - Gérard Lacroix
- UMR iEES Paris (CNRS, UPMC, INRA, IRD, AgroParisTech, UPEC), Institute of Ecology and Environmental Sciences - Paris, Université Pierre et Marie Curie, Paris, France; UMS 3194 - CEREEP Ecotron IDF (CNRS, ENS), Ecole Normale Supérieure, Saint-Pierre-Lès-Nemours, France
| | - Alexis Millot
- UMS 3194 - CEREEP Ecotron IDF (CNRS, ENS), Ecole Normale Supérieure, Saint-Pierre-Lès-Nemours, France
| | - Charlotte Duval
- UMR 7245 MNHN/CNRS Molécules de communication et adaptation des microorganismes, équipe Cyanobactéries, Cyanotoxines et Environnement, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231 Paris Cedex 05, France
| | - Qin Qiao
- UMR 7245 MNHN/CNRS Molécules de communication et adaptation des microorganismes, équipe Cyanobactéries, Cyanotoxines et Environnement, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231 Paris Cedex 05, France
| | - Arnaud Catherine
- UMR 7245 MNHN/CNRS Molécules de communication et adaptation des microorganismes, équipe Cyanobactéries, Cyanotoxines et Environnement, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231 Paris Cedex 05, France
| | - Benjamin Marie
- UMR 7245 MNHN/CNRS Molécules de communication et adaptation des microorganismes, équipe Cyanobactéries, Cyanotoxines et Environnement, Muséum National d'Histoire Naturelle, 12 rue Buffon, F-75231 Paris Cedex 05, France..
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Metabolic changes in Medaka fish induced by cyanobacterial exposures in mesocosms: an integrative approach combining proteomic and metabolomic analyses. Sci Rep 2017. [PMID: 28642462 PMCID: PMC5481417 DOI: 10.1038/s41598-017-04423-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
Cyanobacterial blooms pose serious threats to aquatic organisms and strongly impact the functioning of aquatic ecosystems. Due to their ability to produce a wide range of potentially bioactive secondary metabolites, so called cyanotoxins, cyanobacteria have been extensively studied in the past decades. Proteomic and metabolomic analyses provide a unique opportunity to evaluate the global response of hundreds of proteins and metabolites at a glance. In this study, we provide the first combined utilization of these methods targeted to identify the response of fish to bloom-forming cyanobacteria. Medaka fish (Oryzias latipes) were exposed for 96 hours either to a MC-producing or to a non-MC-producing strain of Microcystis aeruginosa and cellular, proteome and metabolome changes following exposure to cyanobacteria were characterized in the fish livers. The results suggest that a short-term exposure to cyanobacteria, producing or not MCs, induces sex-dependent molecular changes in medaka fish, without causing any cellular alterations. Globally, molecular entities involved in stress response, lipid metabolism and developmental processes exhibit the most contrasted changes following a cyanobacterial exposure. Moreover, it appears that proteomic and metabolomic analyses are useful tools to verify previous information and to additionally bring new horizons concerning molecular effects of cyanobacteria on fish.
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21
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Karouia F, Peyvan K, Pohorille A. Toward biotechnology in space: High-throughput instruments for in situ biological research beyond Earth. Biotechnol Adv 2017; 35:905-932. [PMID: 28433608 DOI: 10.1016/j.biotechadv.2017.04.003] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2016] [Revised: 03/27/2017] [Accepted: 04/12/2017] [Indexed: 12/18/2022]
Abstract
Space biotechnology is a nascent field aimed at applying tools of modern biology to advance our goals in space exploration. These advances rely on our ability to exploit in situ high throughput techniques for amplification and sequencing DNA, and measuring levels of RNA transcripts, proteins and metabolites in a cell. These techniques, collectively known as "omics" techniques have already revolutionized terrestrial biology. A number of on-going efforts are aimed at developing instruments to carry out "omics" research in space, in particular on board the International Space Station and small satellites. For space applications these instruments require substantial and creative reengineering that includes automation, miniaturization and ensuring that the device is resistant to conditions in space and works independently of the direction of the gravity vector. Different paths taken to meet these requirements for different "omics" instruments are the subjects of this review. The advantages and disadvantages of these instruments and technological solutions and their level of readiness for deployment in space are discussed. Considering that effects of space environments on terrestrial organisms appear to be global, it is argued that high throughput instruments are essential to advance (1) biomedical and physiological studies to control and reduce space-related stressors on living systems, (2) application of biology to life support and in situ resource utilization, (3) planetary protection, and (4) basic research about the limits on life in space. It is also argued that carrying out measurements in situ provides considerable advantages over the traditional space biology paradigm that relies on post-flight data analysis.
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Affiliation(s)
- Fathi Karouia
- University of California San Francisco, Department of Pharmaceutical Chemistry, San Francisco, CA 94158, USA; NASA Ames Research Center, Exobiology Branch, MS239-4, Moffett Field, CA 94035, USA; NASA Ames Research Center, Flight Systems Implementation Branch, Moffett Field, CA 94035, USA.
| | | | - Andrew Pohorille
- University of California San Francisco, Department of Pharmaceutical Chemistry, San Francisco, CA 94158, USA; NASA Ames Research Center, Exobiology Branch, MS239-4, Moffett Field, CA 94035, USA.
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22
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Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB, Kaye JZ, Metzner J, Smith SR, Worden AZ. Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nat Rev Microbiol 2016; 15:6-20. [DOI: 10.1038/nrmicro.2016.160] [Citation(s) in RCA: 128] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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23
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The Mechanism of Diarrhetic Shellfish Poisoning Toxin Production in Prorocentrum spp.: Physiological and Molecular Perspectives. Toxins (Basel) 2016; 8:toxins8100272. [PMID: 27669302 PMCID: PMC5086633 DOI: 10.3390/toxins8100272] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2016] [Revised: 08/10/2016] [Accepted: 09/07/2016] [Indexed: 11/16/2022] Open
Abstract
Diarrhetic shellfish poisoning (DSP) is a gastrointestinal disorder caused by the consumption of seafood contaminated with okadaic acid (OA) and dinophysistoxins (DTXs). OA and DTXs are potent inhibitors of protein phosphatases 2A, 1B, and 2B, which may promote cancer in the human digestive system. Their expression in dinoflagellates is strongly affected by nutritional and environmental factors. Studies have indicated that the level of these biotoxins is inversely associated with the growth of dinoflagellates at low concentrations of nitrogen or phosphorus, or at extreme temperature. However, the presence of leucine or glycerophosphate enhances both growth and cellular toxin level. Moreover, the presence of ammonia and incubation in continuous darkness do not favor the toxin production. Currently, studies on the mechanism of this biotoxin production are scant. Full genome sequencing of dinoflagellates is challenging because of the massive genomic size; however, current advanced molecular and omics technologies may provide valuable insight into the biotoxin production mechanism and novel research perspectives on microalgae. This review presents a comprehensive analysis on the effects of various nutritional and physical factors on the OA and DTX production in the DSP toxin-producing Prorocentrum spp. Moreover, the applications of the current molecular technologies in the study on the mechanism of DSP toxin production are discussed.
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Zhou S, Yin H, Tang S, Peng H, Yin D, Yang Y, Liu Z, Dang Z. Physiological responses of Microcystis aeruginosa against the algicidal bacterium Pseudomonas aeruginosa. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2016; 127:214-221. [PMID: 26866757 DOI: 10.1016/j.ecoenv.2016.02.001] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2015] [Revised: 02/02/2016] [Accepted: 02/02/2016] [Indexed: 06/05/2023]
Abstract
Proliferation of cyanobacteria in aquatic ecosystems has caused water security problems throughout the world. Our preliminary study has showed that Pseudomonas aeruginosa can inhibit the growth of cyanobacterium, Microcystis aeruginosa. In order to explore the inhibitory mechanism of P. aeruginosa on the cell growth and synthesis of intracellular substances of M. aeruginosa, concentrations of Chlorophyll-a, intracellular protein, carbohydrate, enzyme activities and ion metabolism of M. aeruginosa, were investigated. The results indicated that 83.84% algicidal efficiency of P. aeruginosa was achieved after treatment for 7 days. The strain inhibited the reproduction of M. aeruginosa by impeding the synthesis of intracellular protein and carbohydrate of cyanobacterium, and only a very small part of intracellular protein and carbohydrate was detected after exposure to P. aeruginosa for 5 days. P. aeruginosa caused the alteration of intracellular antioxidant enzyme activity of M. aeruginosa, such as catalase, peroxidase. The accumulation of malondialdehyde aggravated membrane injury after treatment for 3 days. P. aeruginosa also affected the ion metabolism of cyanobacteria. The release of Na(+) and Cl(-) was significantly enhanced while the uptake of K(+), Ca(2+), Mg(2+), NO3(-) and SO4(2)(-) decreased. Surface morphology and intracellular structure of cyanobacteria and bacterial cells changed dramatically over time as evidenced by electron microscope (SEM) and transmission electron microscope (TEM) analysis. These results revealed that the algicidal activity of P. aeruginosa was primarily due to the fermentation liquid of P. aeruginosa that impeded the synthesis of intracellular protein and carbohydrate, and damaged the cell membrane through membrane lipid peroxidation.
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Affiliation(s)
- Su Zhou
- Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, School of Environment and Energy, South China University of Technology, Guangzhou 510006,Guangdong, China
| | - Hua Yin
- Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, School of Environment and Energy, South China University of Technology, Guangzhou 510006,Guangdong, China.
| | - Shaoyu Tang
- Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, School of Environment and Energy, South China University of Technology, Guangzhou 510006,Guangdong, China
| | - Hui Peng
- Department of Chemistry, Jinan University, Guangzhou 510632, Guangdong, China
| | - Donggao Yin
- Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, School of Environment and Energy, South China University of Technology, Guangzhou 510006,Guangdong, China
| | - Yixuan Yang
- Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, School of Environment and Energy, South China University of Technology, Guangzhou 510006,Guangdong, China
| | - Zehua Liu
- Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, School of Environment and Energy, South China University of Technology, Guangzhou 510006,Guangdong, China
| | - Zhi Dang
- Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, School of Environment and Energy, South China University of Technology, Guangzhou 510006,Guangdong, China
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Nicolas J, Bovee TF, Kamelia L, Rietjens IM, Hendriksen PJ. Exploration of new functional endpoints in neuro-2a cells for the detection of the marine biotoxins saxitoxin, palytoxin and tetrodotoxin. Toxicol In Vitro 2015; 30:341-7. [DOI: 10.1016/j.tiv.2015.10.001] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2015] [Revised: 09/28/2015] [Accepted: 10/01/2015] [Indexed: 11/28/2022]
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Nicolas J, Hendriksen PJM, van Kleef RGDM, de Groot A, Bovee TFH, Rietjens IMCM, Westerink RHS. Detection of marine neurotoxins in food safety testing using a multielectrode array. Mol Nutr Food Res 2014; 58:2369-78. [DOI: 10.1002/mnfr.201400479] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2014] [Revised: 09/18/2014] [Accepted: 09/24/2014] [Indexed: 12/20/2022]
Affiliation(s)
- Jonathan Nicolas
- Division of Toxicology; Wageningen University; Wageningen The Netherlands
- RIKILT; Institute of Food Safety; Wageningen The Netherlands
| | | | - Regina G. D. M. van Kleef
- Neurotoxicology Research Group; Division of Toxicology; Institute for Risk Assessment Sciences (IRAS); Faculty of Veterinary Medicine; Utrecht University; Utrecht The Netherlands
| | - Aart de Groot
- Neurotoxicology Research Group; Division of Toxicology; Institute for Risk Assessment Sciences (IRAS); Faculty of Veterinary Medicine; Utrecht University; Utrecht The Netherlands
| | | | | | - Remco H. S. Westerink
- Neurotoxicology Research Group; Division of Toxicology; Institute for Risk Assessment Sciences (IRAS); Faculty of Veterinary Medicine; Utrecht University; Utrecht The Netherlands
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Kalogerakis N, Arff J, Banat IM, Broch OJ, Daffonchio D, Edvardsen T, Eguiraun H, Giuliano L, Handå A, López-de-Ipiña K, Marigomez I, Martinez I, Øie G, Rojo F, Skjermo J, Zanaroli G, Fava F. The role of environmental biotechnology in exploring, exploiting, monitoring, preserving, protecting and decontaminating the marine environment. N Biotechnol 2014; 32:157-67. [PMID: 24747820 DOI: 10.1016/j.nbt.2014.03.007] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2013] [Revised: 03/03/2014] [Accepted: 03/17/2014] [Indexed: 10/25/2022]
Abstract
In light of the Marine Strategy Framework Directive (MSFD) and the EU Thematic Strategy on the Sustainable Use of Natural Resources, environmental biotechnology could make significant contributions in the exploitation of marine resources and addressing key marine environmental problems. In this paper 14 propositions are presented focusing on (i) the contamination of the marine environment, and more particularly how to optimize the use of biotechnology-related tools and strategies for predicting and monitoring contamination and developing mitigation measures; (ii) the exploitation of the marine biological and genetic resources to progress with the sustainable, eco-compatible use of the maritime space (issues are very diversified and include, for example, waste treatment and recycling, anti-biofouling agents; bio-plastics); (iii) environmental/marine biotechnology as a driver for a sustainable economic growth.
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