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Peng X, Wang Q, Lang D, Li Y, Zhang W, Zhang X. Bacillus cereus G2 Facilitates N Cycle in Soil, Further Improves N Uptake and Assimilation, and Accelerates Proline and Glycine Betaine Metabolisms of Glycyrrhiza uralensis Subjected to Salt Stress. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:15485-15496. [PMID: 37828905 DOI: 10.1021/acs.jafc.3c04936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/14/2023]
Abstract
Soil salinity is a severe abiotic stress that reduces crop productivity. Recently, there has been growing interest in the application of microbes, mainly plant-growth-promoting bacteria (PGPB), as inoculants for saline land restoration and plant salinity tolerance. Herein, the effects of the plant endophyte G2 on regulating soil N cycle, plant N uptake and assimilate pathways, proline and glycine betaine biosynthesis, and catabolic pathways were investigated in Glycyrrhiza uralensis exposed to salinity. The results indicated that G2 improved the efficiency of N absorption and assimilation of plants by facilitating soil N cycling. Then, G2 promoted the synthesis substrates of proline and glycine betaine and accelerated its synthesis rate, which increased the relative water content and reduced the electrolyte leakage, eventually protecting the membrane system caused by salt stress in G. uralensis. These findings will provide a new idea from soil to plant systems in a salinity environment.
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Affiliation(s)
- Xueying Peng
- College of Pharmacy, Ningxia Medical University, Yinchuan 750004, China
| | - Qiuli Wang
- College of Pharmacy, Ningxia Medical University, Yinchuan 750004, China
| | - Duoyong Lang
- College of Basic Medicine, Ningxia Medical University, Yinchuan 750004, China
| | - Yi Li
- College of Pharmacy, Ningxia Medical University, Yinchuan 750004, China
| | - Wenjin Zhang
- College of Pharmacy, Ningxia Medical University, Yinchuan 750004, China
- Ningxia Engineering and Technology Research Center of Regional Characterizistic Traditional Chinese Medicine, Ningxia Collaborative Innovation Center of Regional Characterizistic Traditional Chinese Medicine, Key Laboratory of Ningxia Minority Medicine Modernization, Ministry of Education, Yinchuan 750004, China
| | - Xinhui Zhang
- College of Pharmacy, Ningxia Medical University, Yinchuan 750004, China
- Ningxia Engineering and Technology Research Center of Regional Characterizistic Traditional Chinese Medicine, Ningxia Collaborative Innovation Center of Regional Characterizistic Traditional Chinese Medicine, Key Laboratory of Ningxia Minority Medicine Modernization, Ministry of Education, Yinchuan 750004, China
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Suraninpong P, Thongkhao K, Azzeme AM, Suksa-Ard P. Monitoring Drought Tolerance in Oil Palm: Choline Monooxygenase as a Novel Molecular Marker. PLANTS (BASEL, SWITZERLAND) 2023; 12:3089. [PMID: 37687336 PMCID: PMC10490023 DOI: 10.3390/plants12173089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 08/21/2023] [Accepted: 08/23/2023] [Indexed: 09/10/2023]
Abstract
Water scarcity negatively impacts oil palm production, necessitating the development of drought-tolerant varieties. This study aimed to develop molecular markers for oil palm breeding programs focused on drought tolerance. Genes associated with drought tolerance were selected, and single nucleotide polymorphism (SNP)-based markers were developed. Genomic DNA was successfully extracted from 17 oil palm varieties, and 20 primers out of 44 were effectively amplified. Screening with single-strand conformation polymorphism (SSCP) revealed an informative SNP marker from the choline monooxygenase (CMO) gene, exhibiting CC, CT, and TT genotypes. Notably, the oil palm variety La Mé showed the CT genotype, while Surat Thani 2 (Deli × La Mé) exhibited the CT and CC genotypes in a 1:1 ratio. Gene expression analysis confirmed the association of the CMO gene with drought tolerance in commercial oil palm varieties. The full-length CMO gene was 1308 bp long and shared sequence similarities with other plant species. However, amino acid sequence variations were observed compared with existing databases. These findings highlight the potential utility of the CMO marker for drought tolerance selection, specifically within the La Mé parent of oil palm Surat Thani 2 varieties, and strongly confirm the La Mé S5 population and Surat Thani 2 as drought-tolerant varieties.
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Affiliation(s)
- Potjamarn Suraninpong
- School of Agricultural Technology and Food Industry, Walailak University, Nakhon Si Thammarat 80161, Thailand;
- Biomass and Oil Palm Center of Excellence, Walailak University, Nakhon Si Thammarat 80161, Thailand
| | - Kannika Thongkhao
- School of Languages and General Education, Walailak University, Nakhon Si Thammarat 80161, Thailand;
| | - Azzreena Mohamad Azzeme
- Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia;
| | - Padungsak Suksa-Ard
- School of Agricultural Technology and Food Industry, Walailak University, Nakhon Si Thammarat 80161, Thailand;
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Usman B, Derakhshani B, Jung KH. Recent Molecular Aspects and Integrated Omics Strategies for Understanding the Abiotic Stress Tolerance of Rice. PLANTS (BASEL, SWITZERLAND) 2023; 12:2019. [PMID: 37653936 PMCID: PMC10221523 DOI: 10.3390/plants12102019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 05/11/2023] [Accepted: 05/17/2023] [Indexed: 09/02/2023]
Abstract
Rice is an important staple food crop for over half of the world's population. However, abiotic stresses seriously threaten rice yield improvement and sustainable production. Breeding and planting rice varieties with high environmental stress tolerance are the most cost-effective, safe, healthy, and environmentally friendly strategies. In-depth research on the molecular mechanism of rice plants in response to different stresses can provide an important theoretical basis for breeding rice varieties with higher stress resistance. This review presents the molecular mechanisms and the effects of various abiotic stresses on rice growth and development and explains the signal perception mode and transduction pathways. Meanwhile, the regulatory mechanisms of critical transcription factors in regulating gene expression and important downstream factors in coordinating stress tolerance are outlined. Finally, the utilization of omics approaches to retrieve hub genes and an outlook on future research are prospected, focusing on the regulatory mechanisms of multi-signaling network modules and sustainable rice production.
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Affiliation(s)
- Babar Usman
- Graduate School of Green Green-Bio Science and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Republic of Korea; (B.U.)
| | - Behnam Derakhshani
- Graduate School of Green Green-Bio Science and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Republic of Korea; (B.U.)
| | - Ki-Hong Jung
- Graduate School of Green Green-Bio Science and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Republic of Korea; (B.U.)
- Research Center for Plant Plasticity, Kyung Hee University, Yongin 17104, Republic of Korea
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Zheng Y, Zong J, Liu J, Wang R, Chen J, Guo H, Kong W, Liu J, Chen Y. Mining for salt-tolerant genes from halophyte Zoysia matrella using FOX system and functional analysis of ZmGnTL. FRONTIERS IN PLANT SCIENCE 2022; 13:1063436. [PMID: 36466287 PMCID: PMC9714509 DOI: 10.3389/fpls.2022.1063436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Accepted: 11/03/2022] [Indexed: 06/17/2023]
Abstract
Zoysia matrella is a salt-tolerant turfgrass grown in areas with high soil salinity irrigated with effluent water. Previous studies focused on explaining the regulatory mechanism of Z. matrella salt-tolerance at phenotypic and physiological levels. However, the molecular mechanism associated with salt tolerance of Z. matrella remained unclear. In this study, a high-efficient method named FOX (full-length cDNA overexpression) hunting system was used to search for salt-tolerant genes in Z. matrella. Eleven candidate genes, including several known or novel salt-tolerant genes involved in different metabolism pathways, were identified. These genes exhibited inducible expression under salt stress condition. Furthermore, a novel salt-inducible candidate gene ZmGnTL was transformed into Arabidopsis for functional analysis. ZmGnTL improved salt-tolerance through regulating ion homeostasis, reactive oxygen species scavenging, and osmotic adjustment. In summary, we demonstrated that FOX is a reliable system for discovering novel genes relevant to salt tolerance and several candidate genes were identified from Z. matrella that can assist molecular breeding for plant salt-tolerance improvement.
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Affiliation(s)
- Yuying Zheng
- College of Agro-Grassland Science, Nanjing Agricultural University, Nanjing, China
| | - Junqin Zong
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China
| | - Jun Liu
- College of Agro-Grassland Science, Nanjing Agricultural University, Nanjing, China
| | - Ruying Wang
- Department of Horticulture, Oregon State University, Corvallis, OR, United States
| | - Jingbo Chen
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China
| | - Hailin Guo
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China
| | - Weiyi Kong
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China
| | - Jianxiu Liu
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China
| | - Yu Chen
- College of Agro-Grassland Science, Nanjing Agricultural University, Nanjing, China
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Yang S, Liu M, Chu N, Chen G, Wang P, Mo J, Guo H, Xu J, Zhou H. Combined transcriptome and metabolome reveal glutathione metabolism plays a critical role in resistance to salinity in rice landraces HD961. FRONTIERS IN PLANT SCIENCE 2022; 13:952595. [PMID: 36160959 PMCID: PMC9490218 DOI: 10.3389/fpls.2022.952595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 08/09/2022] [Indexed: 06/16/2023]
Abstract
Rice (Oryza sativa) is one of the most important food crops around the world, which is sensitive to salt stress, especially in the seedling and booting stage. HD961 is a salt-tolerant rice landrace that grows along coastal beaches and has disease and insect pest resistance, salt tolerance, and vigorous growth characteristics. We performed a combined transcriptome and metabolome analysis to clarify salinity resistance mechanisms in cultivar HD961, which has adapted to salinity soil at the early seedling stage. The results showed that the growth and antioxidant capacity of HD961 were stronger than 9311 under salt stress (SS). Transcriptomic analysis showed that a total of 6,145, 3,309, 1,819, and 1,296 differentially expressed genes (DEGs) were identified in the groups of TH60 (control group vs. 60 mM group of HD961 for transcriptome), TH120 (control group vs. 120 mM group of HD961 for transcriptome), T60 (control group vs. 60 mM group of 9311 for transcriptome), and T120 (control group vs. 120 mM group of 9311 for transcriptome), respectively. Starch and sucrose metabolism and phenylpropanoid biosynthesis were shared in the four treatment groups based on a KEGG enrichment analysis of DEGs. In addition, alpha-linolenic acid metabolism, plant hormone signal transduction, plant-pathogen interaction, and fatty acid elongation were specific and significantly different in HD961. A total of 92, 158, 151, and 179 significantly regulated metabolites (SRMs) responded to SS in MH60 (control group vs. 60 mM group of HD961 for metabolome), MH120 (control group vs. 120 mM group of HD961 for metabolome), M60 (control group vs. 60 mM group of 9311 for metabolome), and M120 (control group vs. 120 mM group of 9311 for metabolome), respectively. The KEGG analysis showed that eight common metabolic pathways were identified in the four treatment groups, of which biosynthesis of amino acids was the most significant. Three specific metabolic pathways were identified in the HD961, including glutathione metabolism, ascorbate and aldarate metabolism, and pantothenate and CoA biosynthesis. Integrative analysis between the transcriptome and metabolome showed that glutathione metabolism was specific and significantly affected under SS in HD961. A total of seven SRMs and 48 DEGs and four SRMs and 15 DEGs were identified in the glutathione metabolism pathway in HD961 and 9311, respectively. The Pearson correlation analysis showed a significant correlation between reduced glutathione and 16 genes (12 upregulated and four downregulated genes), suggesting these genes could be candidates as salt-tolerance regulation genes. Collectively, our data show that glutathione metabolism plays a critical role in response to SS in rice. Moreover, the stronger regulative ability of related common genes and metabolites might contribute to salt resistance in HD961.
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Affiliation(s)
- Shan Yang
- College of Coastal Agricultural Sciences, South China Branch of National Saline-Alkali Tolerant Rice Technology Innovation Center, Guangdong Ocean University, Zhanjiang, China
| | - Mengshuang Liu
- College of Coastal Agricultural Sciences, South China Branch of National Saline-Alkali Tolerant Rice Technology Innovation Center, Guangdong Ocean University, Zhanjiang, China
| | - Na Chu
- National Engineering Research Center for Sugarcane, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Guanxiu Chen
- College of Coastal Agricultural Sciences, South China Branch of National Saline-Alkali Tolerant Rice Technology Innovation Center, Guangdong Ocean University, Zhanjiang, China
| | - Panpan Wang
- College of Coastal Agricultural Sciences, South China Branch of National Saline-Alkali Tolerant Rice Technology Innovation Center, Guangdong Ocean University, Zhanjiang, China
| | - Junjie Mo
- College of Coastal Agricultural Sciences, South China Branch of National Saline-Alkali Tolerant Rice Technology Innovation Center, Guangdong Ocean University, Zhanjiang, China
| | - Haifeng Guo
- College of Coastal Agricultural Sciences, South China Branch of National Saline-Alkali Tolerant Rice Technology Innovation Center, Guangdong Ocean University, Zhanjiang, China
| | - Jianghuan Xu
- College of Coastal Agricultural Sciences, South China Branch of National Saline-Alkali Tolerant Rice Technology Innovation Center, Guangdong Ocean University, Zhanjiang, China
| | - Hongkai Zhou
- College of Coastal Agricultural Sciences, South China Branch of National Saline-Alkali Tolerant Rice Technology Innovation Center, Guangdong Ocean University, Zhanjiang, China
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Ishikawa T, Shabala L, Zhou M, Venkataraman G, Yu M, Sellamuthu G, Chen ZH, Shabala S. Comparative Analysis of Root Na+ Relation under Salinity between Oryza sativa and Oryza coarctata. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11050656. [PMID: 35270125 PMCID: PMC8912616 DOI: 10.3390/plants11050656] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2022] [Revised: 02/23/2022] [Accepted: 02/23/2022] [Indexed: 06/01/2023]
Abstract
Na+ toxicity is one of the major physiological constraints imposed by salinity on plant performance. At the same time, Na+ uptake may be beneficial under some circumstances as an easily accessible inorganic ion that can be used for increasing solute concentrations and maintaining cell turgor. Two rice species, Oryza sativa (cultivated rice, salt-sensitive) and Oryza coarctata (wild rice, salt-tolerant), demonstrated different strategies in controlling Na+ uptake. Glasshouse experiments and gene expression analysis suggested that salt-treated wild rice quickly increased xylem Na+ loading for osmotic adjustment but maintained a non-toxic level of stable shoot Na+ concentration by increased activity of a high affinity K+ transporter HKT1;5 (essential for xylem Na+ unloading) and a Na+/H+ exchanger NHX (for sequestering Na+ and K+ into root vacuoles). Cultivated rice prevented Na+ uptake and transport to the shoot at the beginning of salt treatment but failed to maintain it in the long term. While electrophysiological assays revealed greater net Na+ uptake upon salt application in cultivated rice, O. sativa plants showed much stronger activation of the root plasma membrane Na+/H+ Salt Overly Sensitive 1 (SOS1) exchanger. Thus, it appears that wild rice limits passive Na+ entry into root cells while cultivated rice relies heavily on SOS1-mediating Na+ exclusion, with major penalties imposed by the existence of the "futile cycle" at the plasma membrane.
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Affiliation(s)
- Tetsuya Ishikawa
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, TAS 7005, Australia; (T.I.); (L.S.); (M.Z.)
| | - Lana Shabala
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, TAS 7005, Australia; (T.I.); (L.S.); (M.Z.)
| | - Meixue Zhou
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, TAS 7005, Australia; (T.I.); (L.S.); (M.Z.)
| | - Gayatri Venkataraman
- Plant Molecular Biology Laboratory, M. S. Swaminathan Research Foundation, III Cross Street, Taramani Institutional Area, Chennai 600113, India; (G.V.); (G.S.)
| | - Min Yu
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China;
| | - Gothandapani Sellamuthu
- Plant Molecular Biology Laboratory, M. S. Swaminathan Research Foundation, III Cross Street, Taramani Institutional Area, Chennai 600113, India; (G.V.); (G.S.)
- Forest Molecular Entomology Lab, Excellent Team for Mitigation (ETM), Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, 16500 Prague, Czech Republic
| | - Zhong-Hua Chen
- School of Science, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia;
| | - Sergey Shabala
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, TAS 7005, Australia; (T.I.); (L.S.); (M.Z.)
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China;
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Mansour MMF, Hassan FAS. How salt stress-responsive proteins regulate plant adaptation to saline conditions. PLANT MOLECULAR BIOLOGY 2022; 108:175-224. [PMID: 34964081 DOI: 10.1007/s11103-021-01232-x] [Citation(s) in RCA: 28] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Accepted: 12/06/2021] [Indexed: 05/20/2023]
Abstract
An overview is presented of recent advances in our knowledge of candidate proteins that regulate various physiological and biochemical processes underpinning plant adaptation to saline conditions. Salt stress is one of the environmental constraints that restrict plant distribution, growth and yield in many parts of the world. Increased world population surely elevates food demands all over the globe, which anticipates to add a great challenge to humanity. These concerns have necessitated the scientists to understand and unmask the puzzle of plant salt tolerance mechanisms in order to utilize various strategies to develop salt tolerant crop plants. Salt tolerance is a complex trait involving alterations in physiological, biochemical, and molecular processes. These alterations are a result of genomic and proteomic complement readjustments that lead to tolerance mechanisms. Proteomics is a crucial molecular tool that indicates proteins expressed by the genome, and also identifies the functions of proteins accumulated in response to salt stress. Recently, proteomic studies have shed more light on a range of promising candidate proteins that regulate various processes rendering salt tolerance to plants. These proteins have been shown to be involved in photosynthesis and energy metabolism, ion homeostasis, gene transcription and protein biosynthesis, compatible solute production, hormone modulation, cell wall structure modification, cellular detoxification, membrane stabilization, and signal transduction. These candidate salt responsive proteins can be therefore used in biotechnological approaches to improve tolerance of crop plants to salt conditions. In this review, we provided comprehensive updated information on the proteomic data of plants/genotypes contrasting in salt tolerance in response to salt stress. The roles of salt responsive proteins that are potential determinants for plant salt adaptation are discussed. The relationship between changes in proteome composition and abundance, and alterations observed in physiological and biochemical features associated with salt tolerance are also addressed.
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Affiliation(s)
| | - Fahmy A S Hassan
- Department of Horticulture, Faculty of Agriculture, Tanta University, Tanta, Egypt
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Malik MA, Wani AH, Mir SH, Rehman IU, Tahir I, Ahmad P, Rashid I. Elucidating the role of silicon in drought stress tolerance in plants. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 165:187-195. [PMID: 34049031 DOI: 10.1016/j.plaphy.2021.04.021] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2020] [Accepted: 04/13/2021] [Indexed: 05/12/2023]
Abstract
Predicted changes in climate, with more severe droughts and more extreme weather variability, are gaining considerable attention from stakeholders because of the already stressed and seriously challenging agricultural ecosystems of the contemporary world. One of the greatest challenges faced by these unique ecosystems due to climate change is drought stress, which affects plant growth, development and metabolic processes, thus reducing production, yield, and quality of crop plants. Plants counter this stress by employing complex mechanisms through a series of physiological, cellular, and molecular processes. Among the myriad of stress tolerance mechanisms, the positive effects of Si on water status of plants have been widely appreciated. Here, we review the potential of Si supplementation in alleviating drought stress and highlight the imported mechanisms involved in Si mediated reduction of drought stress in plants. Si fertilization not only enhances the photosynthetic pigments, growth, biomass, antioxidant enzymes, gene expression, osmolyte concentrations and nutrient uptake but also improves crop production, yield and grain quality during drought stress. In addition, it provides insights on important mechanisms involved in the modification of gas exchange attributes, gene modification, nutritional homeostasis, control synthesis of compatible solutes, osmotic adjustment and stimulation of phytohormone biosynthesis and antioxidant enzymes under drought stress. We also highlight knowledge gaps and future research prospects to understand Si mediated role in alleviating drought stress.
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Affiliation(s)
- Mushtaq Ahmad Malik
- Department of Botany, University of Kashmir Srinagar, 190006, Jammu and Kashmir, India
| | - Abid Hussain Wani
- Department of Botany, University of Kashmir Srinagar, 190006, Jammu and Kashmir, India
| | - Showkat Hamid Mir
- Department of Botany, University of Kashmir Srinagar, 190006, Jammu and Kashmir, India
| | - Ishfaq Ul Rehman
- Department of Botany, University of Kashmir Srinagar, 190006, Jammu and Kashmir, India
| | - Inayatullah Tahir
- Department of Botany, University of Kashmir Srinagar, 190006, Jammu and Kashmir, India
| | - Parvaiz Ahmad
- Botany and Microbiology Department, King Saud University, Riyadh, Saudi Arabia; Department of Botany, S.P. College, Srinagar, Jammu and Kashmir, India.
| | - Irfan Rashid
- Department of Botany, University of Kashmir Srinagar, 190006, Jammu and Kashmir, India.
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Li QM, Zhou YL, Wei ZF, Wang Y. Phylogenomic Insights into Distribution and Adaptation of Bdellovibrionota in Marine Waters. Microorganisms 2021; 9:757. [PMID: 33916768 PMCID: PMC8067016 DOI: 10.3390/microorganisms9040757] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 03/26/2021] [Accepted: 04/01/2021] [Indexed: 11/23/2022] Open
Abstract
Bdellovibrionota is composed of obligate predators that can consume some Gram-negative bacteria inhabiting various environments. However, whether genomic traits influence their distribution and marine adaptation remains to be answered. In this study, we performed phylogenomics and comparative genomics studies using 132 Bdellovibrionota genomes along with five metagenome-assembled genomes (MAGs) from deep sea zones. Four phylogenetic groups, Oligoflexia, Bdello-group1, Bdello-group2 and Bacteriovoracia, were revealed by constructing a phylogenetic tree, of which 53.84% of Bdello-group2 and 48.94% of Bacteriovoracia were derived from the ocean. Bacteriovoracia was more prevalent in deep sea zones, whereas Bdello-group2 was largely distributed in the epipelagic zone. Metabolic reconstruction indicated that genes involved in chemotaxis, flagellar (mobility), type II secretion system, ATP-binding cassette (ABC) transporters and penicillin-binding protein were necessary for the predatory lifestyle of Bdellovibrionota. Genes involved in glycerol metabolism, hydrogen peroxide (H2O2) degradation, cell wall recycling and peptide utilization were ubiquitously present in Bdellovibrionota genomes. Comparative genomics between marine and non-marine Bdellovibrionota demonstrated that betaine as an osmoprotectant is probably widely used by marine Bdellovibrionota, and all the marine genomes have a number of genes for adaptation to marine environments. The genes encoding chitinase and chitin-binding protein were identified for the first time in Oligoflexia, which implied that Oligoflexia may prey on a wider spectrum of microbes. This study expands our knowledge on adaption strategies of Bdellovibrionota inhabiting deep seas and the potential usage of Oligoflexia for biological control.
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Affiliation(s)
- Qing-Mei Li
- Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya 572000, China; (Q.-M.L.); (Y.-L.Z.); (Z.-F.W.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ying-Li Zhou
- Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya 572000, China; (Q.-M.L.); (Y.-L.Z.); (Z.-F.W.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhan-Fei Wei
- Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya 572000, China; (Q.-M.L.); (Y.-L.Z.); (Z.-F.W.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yong Wang
- Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya 572000, China; (Q.-M.L.); (Y.-L.Z.); (Z.-F.W.)
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Yadav AK, Kumar A, Grover N, Ellur RK, Bollinedi H, Krishnan SG, Bhowmick PK, Vinod KK, Nagarajan M, Singh AK. Genome-Wide Association Study Reveals Marker-Trait Associations for Early Vegetative Stage Salinity Tolerance in Rice. PLANTS (BASEL, SWITZERLAND) 2021; 10:559. [PMID: 33809618 PMCID: PMC8000697 DOI: 10.3390/plants10030559] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Revised: 03/04/2021] [Accepted: 03/10/2021] [Indexed: 11/16/2022]
Abstract
Rice germplasm is a rich resource for discovering genes associated with salt tolerance. In the current study, a set of 96 accessions were evaluated for seedling stage salinity tolerance and its component traits. Significant phenotypic variation was observed among the genotypes for all the measured traits and eleven accessions with high level of salt tolerance at seedling stage were identified. The germplasm set comprised of three sub-populations and genome-wide association study (GWAS) identified a total of 23 marker-trait associations (MTAs) for traits studied. These MTAs were located on rice chromosomes 1, 2, 5, 6, 7, 9, and 12 and explained the trait phenotypic variances ranging from 13.98 to 29.88 %. Twenty-one MTAs identified in this study were located either in or near the previously reported quantitative trait loci (QTLs), while two MTAs namely, qSDW2.1 and qSNC5 were novel. A total of 18 and 13 putative annotated candidate genes were identified in a genomic region spanning ~200 kb around the MTAs qSDW2.1 and qSNC5, respectively. Some of the important genes underlying the novel MTAs were OsFBA1,OsFBL7, and mTERF which are known to be associated with salinity tolerance in crops. These MTAs pave way for combining salinity tolerance with high yield in rice genotypes through molecular breeding.
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Affiliation(s)
- Ashutosh Kumar Yadav
- Division of Genetics, ICAR—Indian Agricultural Research Institute, New Delhi 110012, India; (A.K.Y.); (N.G.); (R.K.E.); (H.B.); (S.G.K.); (P.K.B.); (K.K.V.)
- Amity Institute of Biotechnology, Amity University, Noida 201303, India;
| | - Aruna Kumar
- Amity Institute of Biotechnology, Amity University, Noida 201303, India;
| | - Nitasha Grover
- Division of Genetics, ICAR—Indian Agricultural Research Institute, New Delhi 110012, India; (A.K.Y.); (N.G.); (R.K.E.); (H.B.); (S.G.K.); (P.K.B.); (K.K.V.)
| | - Ranjith Kumar Ellur
- Division of Genetics, ICAR—Indian Agricultural Research Institute, New Delhi 110012, India; (A.K.Y.); (N.G.); (R.K.E.); (H.B.); (S.G.K.); (P.K.B.); (K.K.V.)
| | - Haritha Bollinedi
- Division of Genetics, ICAR—Indian Agricultural Research Institute, New Delhi 110012, India; (A.K.Y.); (N.G.); (R.K.E.); (H.B.); (S.G.K.); (P.K.B.); (K.K.V.)
| | - Subbaiyan Gopala Krishnan
- Division of Genetics, ICAR—Indian Agricultural Research Institute, New Delhi 110012, India; (A.K.Y.); (N.G.); (R.K.E.); (H.B.); (S.G.K.); (P.K.B.); (K.K.V.)
| | - Prolay Kumar Bhowmick
- Division of Genetics, ICAR—Indian Agricultural Research Institute, New Delhi 110012, India; (A.K.Y.); (N.G.); (R.K.E.); (H.B.); (S.G.K.); (P.K.B.); (K.K.V.)
| | - Kunnummal Kurungara Vinod
- Division of Genetics, ICAR—Indian Agricultural Research Institute, New Delhi 110012, India; (A.K.Y.); (N.G.); (R.K.E.); (H.B.); (S.G.K.); (P.K.B.); (K.K.V.)
| | - Mariappan Nagarajan
- Rice Breeding and Genetics Research Centre, ICAR—Indian Agricultural Research Institute, Aduthurai 612101, Tamil Nadu, India;
| | - Ashok Kumar Singh
- Division of Genetics, ICAR—Indian Agricultural Research Institute, New Delhi 110012, India; (A.K.Y.); (N.G.); (R.K.E.); (H.B.); (S.G.K.); (P.K.B.); (K.K.V.)
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Ming R, Zhang Y, Wang Y, Khan M, Dahro B, Liu JH. The JA-responsive MYC2-BADH-like transcriptional regulatory module in Poncirus trifoliata contributes to cold tolerance by modulation of glycine betaine biosynthesis. THE NEW PHYTOLOGIST 2021; 229:2730-2750. [PMID: 33131086 DOI: 10.1111/nph.17063] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 10/26/2020] [Indexed: 05/15/2023]
Abstract
Glycine betaine (GB) is known to accumulate in plants exposed to cold, but the underlying molecular mechanisms and associated regulatory network remain unclear. Here, we demonstrated that PtrMYC2 of Poncirus trifoliata integrates the jasmonic acid (JA) signal to modulate cold-induced GB accumulation by directly regulating PtrBADH-l, a betaine aldehyde dehydrogenase (BADH)-like gene. PtrBADH-l was identified based on transcriptome and expression analysis in P. trifoliata. Overexpression and VIGS (virus-induced gene silencing)-mediated knockdown showed that PtrBADH-l plays a positive role in cold tolerance and GB synthesis. Yeast one-hybrid library screening using PtrBADH-l promoter as baits unraveled PtrMYC2 as an interacting candidate. PtrMYC2 was confirmed to directly bind to two G-box cis-acting elements within PtrBADH-l promoter and acts as a transcriptional activator. In addition, PtrMYC2 functions positively in cold tolerance through modulation of GB synthesis by regulating PtrBADH-l expression. Interestingly, we found that GB accumulation under cold stress was JA-dependent and that PtrMYC2 orchestrates JA-mediated PtrBADH-l upregulation and GB accumulation. This study sheds new light on the roles of MYC2 homolog in modulating GB synthesis. In particular, we propose a transcriptional regulatory module PtrMYC2-PtrBADH-l to advance the understanding of molecular mechanisms underlying the GB accumulation under cold stress.
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Affiliation(s)
- Ruhong Ming
- Key Laboratory of Horticultural Plant Biology (MOE), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, China
| | - Yang Zhang
- Key Laboratory of Horticultural Plant Biology (MOE), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, China
| | - Yue Wang
- Key Laboratory of Horticultural Plant Biology (MOE), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, China
| | - Madiha Khan
- Key Laboratory of Horticultural Plant Biology (MOE), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, China
| | - Bachar Dahro
- Key Laboratory of Horticultural Plant Biology (MOE), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, China
| | - Ji-Hong Liu
- Key Laboratory of Horticultural Plant Biology (MOE), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, China
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González-Morales S, Solís-Gaona S, Valdés-Caballero MV, Juárez-Maldonado A, Loredo-Treviño A, Benavides-Mendoza A. Transcriptomics of Biostimulation of Plants Under Abiotic Stress. Front Genet 2021; 12:583888. [PMID: 33613631 PMCID: PMC7888440 DOI: 10.3389/fgene.2021.583888] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Accepted: 01/06/2021] [Indexed: 12/20/2022] Open
Abstract
Plant biostimulants are compounds, living microorganisms, or their constituent parts that alter plant development programs. The impact of biostimulants is manifested in several ways: via morphological, physiological, biochemical, epigenomic, proteomic, and transcriptomic changes. For each of these, a response and alteration occur, and these alterations in turn improve metabolic and adaptive performance in the environment. Many studies have been conducted on the effects of different biotic and abiotic stimulants on plants, including many crop species. However, as far as we know, there are no reviews available that describe the impact of biostimulants for a specific field such as transcriptomics, which is the objective of this review. For the commercial registration process of products for agricultural use, it is necessary to distinguish the specific impact of biostimulants from that of other legal categories of products used in agriculture, such as fertilizers and plant hormones. For the chemical or biological classification of biostimulants, the classification is seen as a complex issue, given the great diversity of compounds and organisms that cause biostimulation. However, with an approach focused on the impact on a particular field such as transcriptomics, it is perhaps possible to obtain a criterion that allows biostimulants to be grouped considering their effects on living systems, as well as the overlap of the impact on metabolism, physiology, and morphology occurring between fertilizers, hormones, and biostimulants.
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Omari Alzahrani F. Metabolic engineering of osmoprotectants to elucidate the mechanism(s) of salt stress tolerance in crop plants. PLANTA 2021; 253:24. [PMID: 33403449 DOI: 10.1007/s00425-020-03550-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Accepted: 12/22/2020] [Indexed: 05/08/2023]
Abstract
Previous studies on engineering osmoprotectant metabolic pathway genes focused on the performance of transgenic plants under salt stress conditions rather than elucidating the underlying mechanism(s), and hence, the mechanism(s) remain(s) unclear. Salt stress negatively impacts agricultural crop yields. Hence, to meet future food demands, it is essential to generate salt stress-resistant varieties. Although traditional breeding has improved salt tolerance in several crops, this approach remains inadequate due to the low genetic diversity of certain important crop cultivars. Genetic engineering is used to introduce preferred gene(s) from any genetic reserve or to modify the expression of the existing gene(s) responsible for salt stress response or tolerance, thereby leading to improved salt tolerance in plants. Although plants naturally produce osmoprotectants as an adaptive mechanism for salt stress tolerance, they offer only partial protection. Recently, progress has been made in the identification and characterization of genes involved in the biosynthetic pathways of osmoprotectants. Exogenous application of these osmoprotectants, and genetic engineering of enzymes in their biosynthetic pathways, have been reported to enhance salt tolerance in different plants. However, no clear mechanistic model exists to explain how osmoprotectant accumulation in transgenic plants confers salt tolerance. This review critically examines the results obtained thus far for elucidating the underlying mechanisms of osmoprotectants for improved salt tolerance, and thus, crop yield stability under salt stress conditions, through the genetic engineering of trehalose, glycinebetaine, and proline metabolic pathway genes.
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Affiliation(s)
- Fatima Omari Alzahrani
- Department of Biology, Faculty of Science, Albaha Province, Albaha University, Albaha, 65527, Saudi Arabia.
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Sun H, Sun X, Wang H, Ma X. Advances in salt tolerance molecular mechanism in tobacco plants. Hereditas 2020; 157:5. [PMID: 32093781 PMCID: PMC7041081 DOI: 10.1186/s41065-020-00118-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Accepted: 02/18/2020] [Indexed: 02/01/2023] Open
Abstract
Tobacco, an economic crop and important model plant, has received more progress in salt tolerance with the aid of transgenic technique. Salt stress has become a key research field in abiotic stress. The study of tobacco promotes the understanding about the important adjustment for survival in high salinity environments, including cellular ion transport, osmotic regulation, antioxidation, signal transduction and expression regulation, and protection of cells from stress damage. Genes, which response to salt, have been studied using targeted transgenic technologies in tobacco plants to investigate the molecular mechanisms. The transgenic tobacco plants exhibited higher seed germination and survival rates, better root and shoot growth under salt stress treatments. Transgenic approach could be the promising option for enhancing tobacco production under saline condition. This review highlighted the salt tolerance molecular mechanisms of tobacco.
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Affiliation(s)
- Haiji Sun
- School of Life Science, Shandong Normal University, Jinan, 250014 China
| | - Xiaowen Sun
- School of Life Science, Shandong Normal University, Jinan, 250014 China
| | - Hui Wang
- School of Life Science, Shandong Normal University, Jinan, 250014 China
| | - Xiaoli Ma
- Central laboratory, Jinan Central Hospital Affiliated to Shandong University, Jinan, 250013 China
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Gao Y, Li M, Zhang X, Yang Q, Huang B. Up-regulation of lipid metabolism and glycine betaine synthesis are associated with choline-induced salt tolerance in halophytic seashore paspalum. PLANT, CELL & ENVIRONMENT 2020; 43:159-173. [PMID: 31600831 DOI: 10.1111/pce.13657] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Revised: 09/16/2019] [Accepted: 09/18/2019] [Indexed: 06/10/2023]
Abstract
Choline may affect salt tolerance by regulating lipid and glycine betaine (GB) metabolism. This study was conducted to determine whether alteration of lipid profiles and GB metabolism may contribute to choline regulation and genotypic variations in salt tolerance in a halophytic grass, seashore paspalum (Paspalum vaginatum). Plants of Adalayd and Sea Isle 2000 were subjected to salt stress (200-mM NaCl) with or without foliar application of choline chloride (1 mM). Genotypic variations in salt tolerance and promotive effects of choline application on salt tolerance were associated with both the up-regulation of lipid metabolism and GB synthesis. The genotypic variations in salt tolerance associated with lipid metabolism were reflected by the differential accumulation of phosphatidylcholine and phosphatidylethanolamine between Adalayd and Sea Isle 2000. Choline-induced salt tolerance was associated with of the increase in digalactosyl diacylglycerol (DGDG) content including DGDG (36:4 and 36:6) in both cultivars of seashore paspalum and enhanced synthesis of phosphatidylinositol (34:2, 36:5, and 36:2) and phosphatidic acid (34:2, 34:1, and 36:5), as well as increases in the ratio of digalactosyl diacylglycerol: monogalactosyl diacylglycerol (DGDG:MGDG) in salt-tolerant Sea Isle 2000. Choline regulation of salt tolerance may be due to the alteration in lipid metabolism in this halophytic grass species.
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Affiliation(s)
- Yanli Gao
- Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, PR China
- Department of Plant Biology and Pathology, Rutgers, The State University of New Jersey, New Brunswick, NJ, 08901, USA
| | - Mingna Li
- Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, PR China
- Department of Plant Biology and Pathology, Rutgers, The State University of New Jersey, New Brunswick, NJ, 08901, USA
| | - Xiaxiang Zhang
- College of Agro-grassland Science, Nanjing Agricultural University, Nanjing, 10095, PR China
| | - Qingchuan Yang
- Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, PR China
| | - Bingru Huang
- Department of Plant Biology and Pathology, Rutgers, The State University of New Jersey, New Brunswick, NJ, 08901, USA
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Ganie SA, Molla KA, Henry RJ, Bhat KV, Mondal TK. Advances in understanding salt tolerance in rice. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2019; 132:851-870. [PMID: 30759266 DOI: 10.1007/s00122-019-03301-8] [Citation(s) in RCA: 85] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Accepted: 02/02/2019] [Indexed: 05/03/2023]
Abstract
This review presents a comprehensive overview of the recent research on rice salt tolerance in the areas of genomics, proteomics, metabolomics and chemical genomics. Salinity is one of the major constraints in rice cultivation globally. Traditionally, rice is a glycophyte except for a few genotypes that have been widely used in salinity tolerance breeding of rice. Both seedling and reproductive stages of rice are considered to be the salt-susceptible stages; however, research efforts have been biased towards improving the understanding of seedling-stage salt tolerance. An extensive literature survey indicated that there have been very few attempts to develop reproductive stage-specific salt tolerance in rice probably due to the lack of salt-tolerant phenotypes at the reproductive stage. Recently, the role of DNA methylation, genome duplication and codon usage bias in salinity tolerance of rice have been studied. Furthermore, the study of exogenous salt stress alleviants in rice has opened up another potential avenue for understanding and improving its salt tolerance. There is a need to not only generate additional genomic resources in the form of salt-responsive QTLs and molecular markers and to characterize the genes and their upstream regulatory regions, but also to use them to gain deep insights into the mechanisms useful for developing tolerant varieties. We analysed the genomic locations of diverse salt-responsive genomic resources and found that rice chromosomes 1-6 possess the majority of these salinity-responsive genomic resources. The review presents a comprehensive overview of the recent research on rice salt tolerance in the areas of genomics, proteomics, metabolomics and chemical genomics, which should help in understanding the molecular basis of salinity tolerance and its more effective improvement in rice.
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Affiliation(s)
- Showkat Ahmad Ganie
- ICAR-National Bureau of Plant Genetic Resources, IARI Campus, Pusa, New Delhi, 110012, India
| | - Kutubuddin Ali Molla
- ICAR-National Bureau of Plant Genetic Resources, IARI Campus, Pusa, New Delhi, 110012, India
| | - Robert J Henry
- Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St Lucia, QLD, 4072, Australia
| | - K V Bhat
- ICAR-National Bureau of Plant Genetic Resources, IARI Campus, Pusa, New Delhi, 110012, India
| | - Tapan Kumar Mondal
- ICAR-National Bureau of Plant Genetic Resources, IARI Campus, Pusa, New Delhi, 110012, India.
- ICAR-National Research Centre on Plant Biotechnology, IARI, Pusa, New Delhi, 110012, India.
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Missihoun TD, Willée E, Guegan JP, Berardocco S, Shafiq MR, Bouchereau A, Bartels D. Overexpression of ALDH10A8 and ALDH10A9 Genes Provides Insight into Their Role in Glycine Betaine Synthesis and Affects Primary Metabolism in Arabidopsis thaliana. PLANT & CELL PHYSIOLOGY 2015; 56:1798-807. [PMID: 26169197 DOI: 10.1093/pcp/pcv105] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2015] [Accepted: 07/09/2015] [Indexed: 05/11/2023]
Abstract
Betaine aldehyde dehydrogenases oxidize betaine aldehyde to glycine betaine in species that accumulate glycine betaine as a compatible solute under stress conditions. In contrast, the physiological function of betaine aldehyde dehydrogenase genes is at present unclear in species that do not accumulate glycine betaine, such as Arabidopsis thaliana. To address this question, we overexpressed the Arabidopsis ALDH10A8 and ALDH10A9 genes, which were identified to code for betaine aldehyde dehydrogenases, in wild-type A. thaliana. We analysed changes in metabolite contents of transgenic plants in comparison with the wild type. Using exogenous or endogenous choline, our results indicated that ALDH10A8 and ALDH10A9 are involved in the synthesis of glycine betaine in Arabidopsis. Choline availability seems to be a factor limiting glycine betaine synthesis. Moreover, the contents of diverse metabolites including sugars (glucose and fructose) and amino acids were altered in fully developed transgenic plants compared with the wild type. The plant metabolic response to salt and the salt stress tolerance were impaired only in young transgenic plants, which exhibited a delayed growth of the seedlings early after germination. Our results suggest that a balanced expression of the betaine aldehyde dehydrogenase genes is important for early growth of A. thaliana seedlings and for salt stress mitigation in young seedlings.
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Affiliation(s)
- Tagnon D Missihoun
- Institute of Molecular Physiology and Biotechnology of Plants (IMBIO), University of Bonn, Kirschallee 1, D-53115 Bonn, Germany Department of Biology, 112 Science Place, University of Saskatchewan, Saskatoon, Saskatchewan, Canada, S7N 5E2
| | - Eva Willée
- Institute of Molecular Physiology and Biotechnology of Plants (IMBIO), University of Bonn, Kirschallee 1, D-53115 Bonn, Germany Present address: Botanisches Institut der Universität zu Köln Zülpicher Str.47b, D-50674 Köln, Germany
| | - Jean-Paul Guegan
- ENSCR-UMR CNRS 6226, Institute des Sciences Chimiques de Rennes, Campus de Beaulieu, 35708 Rennes, France
| | - Solenne Berardocco
- UMR 1349, Institut de Génétique, Environnement et Protection des Plantes, INRA, Agrocampus Ouest, Université de Rennes 1, 35653 Le Rheu, France
| | - Muhammad R Shafiq
- Institute of Molecular Physiology and Biotechnology of Plants (IMBIO), University of Bonn, Kirschallee 1, D-53115 Bonn, Germany
| | - Alain Bouchereau
- UMR 1349, Institut de Génétique, Environnement et Protection des Plantes, INRA, Agrocampus Ouest, Université de Rennes 1, 35653 Le Rheu, France
| | - Dorothea Bartels
- Institute of Molecular Physiology and Biotechnology of Plants (IMBIO), University of Bonn, Kirschallee 1, D-53115 Bonn, Germany
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Tang W, Sun J, Liu J, Liu F, Yan J, Gou X, Lu BR, Liu Y. RNAi-directed downregulation of betaine aldehyde dehydrogenase 1 (OsBADH1) results in decreased stress tolerance and increased oxidative markers without affecting glycine betaine biosynthesis in rice (Oryza sativa). PLANT MOLECULAR BIOLOGY 2014; 86:443-454. [PMID: 25150410 DOI: 10.1007/s11103-014-0239-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2014] [Accepted: 08/14/2014] [Indexed: 06/03/2023]
Abstract
As an important osmoprotectant, glycine betaine (GB) plays an essential role in resistance to abiotic stress in a variety of organisms, including rice (Oryza sativa L.). However, GB content is too low to be detectable in rice, although rice genome possesses several orthologs coding for betaine aldehyde dehydrogenase (BADH) involved in plant GB biosynthesis. Rice BADH1 (OsBADH1) has been shown to be targeted to peroxisome and its overexpression resulted in increased GB biosynthesis and tolerance to abiotic stress. In this study, we demonstrated a pivotal role of OsBADH1 in stress tolerance without altering GB biosynthesis capacity, using the RNA interference (RNAi) technique. OsBADH1 was ubiquitously expressed in different organs, including roots, stems, leaves and flowers. Transgenic rice lines downregulating OsBADH1 exhibited remarkably reduced tolerance to NaCl, drought and cold stresses. The decrease of stress tolerance occurring in the OsBADH1-RNAi repression lines was associated with an elevated level of malondialdehyde content and hydrogen peroxidation. No GB accumulation was detected in transgene-positive and transgene-negative lines derived from heterozygous transgenic T0 plants. Moreover, transgenic OsBADH1-RNAi repression lines showed significantly reduced seed set and yield. In conclusion, the downregulation of OsBADH1, even though not causing any change of GB content, was accounted for the reduction of ability to dehydrogenate the accumulating metabolism-derived aldehydes and subsequently resulted in decreased stress tolerance and crop productivity. These results suggest that OsBADH1 possesses an enzyme activity to catalyze other aldehydes in addition to betaine aldehyde (the precursor of GB) and thus alleviate their toxic effects under abiotic stresses.
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Affiliation(s)
- Wei Tang
- Ministry of Education Key Laboratory for Bio-resource and Eco-environment, State Key Laboratory of Hydraulics and Mountain River Engineering, College of Life Science, Sichuan University, Chengdu, China
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