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Nagasato D, Sugita Y, Tsuno Y, Tanaka R, Fukuda M, Matsuoka K. Glycosylphosphatidylinositol-anchoring is required for the proper transport and extensive glycosylation of a classical arabinogalactan protein precursor in tobacco BY-2 cells. Biosci Biotechnol Biochem 2023; 87:991-1008. [PMID: 37348475 DOI: 10.1093/bbb/zbad081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Accepted: 06/13/2023] [Indexed: 06/24/2023]
Abstract
Many precursors of plant arabinogalactan proteins (AGPs) contain a C-terminal glycosylphosphatidylinositol (GPI)-anchoring signal. Using NtAGP1, a classical tobacco AGP, as a model, and green fluorescent protein (GFP) and sweet potato sporamin (SPO) as tags, we analyzed the localization and modification of AGP and its mutant without GPI-anchoring signal (AGPΔC) in tobacco BY-2 cells. The NtAGP1 fusion proteins migrated as large smear on SDS-polyacrylamide gel, and these proteins also localized preferentially to the plasma membrane. In contrast, fusions of AGPΔC with GFP and SPO yielded several forms: The largest were secreted, whereas others were recovered in the endomembrane organelles, including vacuoles. Comparison of the glycan structures of the microsomal SPO-AGP and the secreted SPO-AGPΔC using antibodies against the glycan epitopes of AGP indicated that the glycan structures of these proteins are different. These observations indicate that GPI-anchoring is required for the proper transport and glycosylation of the AGP precursor.
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Affiliation(s)
- Daiki Nagasato
- Graduate School of Bioresource and Bioenvironmental Science, Kyushu University, Fukuoka, Japan
| | - Yuto Sugita
- Graduate School of Bioresource and Bioenvironmental Science, Kyushu University, Fukuoka, Japan
| | - Yuhei Tsuno
- Graduate School of Bioresource and Bioenvironmental Science, Kyushu University, Fukuoka, Japan
| | | | - Maki Fukuda
- School of Agriculture, Kyushu University, Fukuoka, Japan
| | - Ken Matsuoka
- Graduate School of Bioresource and Bioenvironmental Science, Kyushu University, Fukuoka, Japan
- School of Agriculture, Kyushu University, Fukuoka, Japan
- Faculty of Agriculture, Kyushu University, Fukuoka, Japan
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2
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Arabinogalactan-proteins from non-coniferous gymnosperms have unusual structural features. Carbohydr Polym 2021; 261:117831. [PMID: 33766335 DOI: 10.1016/j.carbpol.2021.117831] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Revised: 02/11/2021] [Accepted: 02/12/2021] [Indexed: 11/24/2022]
Abstract
Arabinogalactan-proteins (AGPs), important signalling molecules of the plant cell wall, are structurally extensively investigated in angiosperms, but information on AGPs in gymnosperms is still limited. We characterized AGPs from the gymnosperms Ginkgo biloba, Ephedra distachya, Encephalartos longifolius and Cycas revoluta. The protein contents are comparable to that of angiosperm AGPs. Hydroxyproline is the site of linking the carbohydrate part and was detected in all AGPs with highest concentration in Cycas AGP (1.1 % of the AGP). Interestingly, with the exception of Cycas, all AGPs contained the monosaccharide 3-O-methylrhamnose not present in angiosperm polysaccharides. The carbohydrate moieties of Cycas and Ephredra showed the main components 1,3,6-linked galactose and terminal arabinose typical of angiosperm AGPs, whereas that of Ginkgo AGP was unique with 1,4-linked galactose as dominant structural element. Bioinformatic search for glycosyltransferases in Ginkgo genome also revealed a lower number of galactosyltransferases responsible for biosynthesis of the 1,3-Gal/1,6-Gal AGP backbone.
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Makarova EN, Shakhmatov EG. Characterization of pectin-xylan-glucan-arabinogalactan proteins complex from Siberian fir Abies sibirica Ledeb. Carbohydr Polym 2021; 260:117825. [PMID: 33712166 DOI: 10.1016/j.carbpol.2021.117825] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2020] [Revised: 02/11/2021] [Accepted: 02/12/2021] [Indexed: 10/22/2022]
Abstract
Polysaccharide ASK was isolated from the Abies sibirica foliage by extraction with an aqueous KOH solution. ASK was shown to contain structurally different polymers such as arabinoglucuronoxylans, xyloglucans, glucomannans, arabinogalactan-proteins (AGPs). The pectic polysaccharides were also found in the alkaline extract of ASK and were represented by regions of homogalactorunan and rhamnogalactouronan-I whose side sugar chains were made up chiefly of highly branched 1,5-α-l-arabinan. The potential couplings between those polysaccharides were examined. Our studies showed simultaneous elution of pectin, xyloglucans, arabinoglucuronoxylans and AGPs, indicating that pectins can be covalently bound to the other cell-wall polysaccharides. NMR spectroscopy results revealed that the polysaccharides obtained by ion-exchange chromatography almost had no free reducing ends. These findings corroborate the conclusion that pectin, AGPs, glucan and xylan are bound together. The existence of the covalently bound complex of pectin-xylan-xyloglucan-AGP is suggested herein. Pectin and xylan are hypothesized to be covalently linked through RG-I regions.
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Affiliation(s)
- Elena N Makarova
- Institute of Chemistry, Federal Research Center "Komi Science Center of the Ural Branch of the Russian Academy of Sciences", Pervomaiskaya St. 48, Syktyvkar, 167982, Russia.
| | - Evgeny G Shakhmatov
- Institute of Chemistry, Federal Research Center "Komi Science Center of the Ural Branch of the Russian Academy of Sciences", Pervomaiskaya St. 48, Syktyvkar, 167982, Russia
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Saeidy S, Petera B, Pierre G, Fenoradosoa TA, Djomdi D, Michaud P, Delattre C. Plants arabinogalactans: From structures to physico-chemical and biological properties. Biotechnol Adv 2021; 53:107771. [PMID: 33992708 DOI: 10.1016/j.biotechadv.2021.107771] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Revised: 04/10/2021] [Accepted: 05/08/2021] [Indexed: 01/02/2023]
Abstract
Arabinogalactans (AGs) are plant heteropolysaccharides with complex structures occasionally attached to proteins (AGPs). AGs in cell matrix of different parts of plant are freely available or chemically bound to pectin rhamnogalactan. Type I with predominantly β-d-(1 → 4)-galactan and type II with β-d-(1 → 3) and/or (1 → 6)-galactan structural backbones construct the two main groups of AGs. In the current review, the chemical structure of AGs is firstly discussed focusing on non-traditional plant sources and not including well known industrial gums. After that, processes for their extraction and purification are considered and finally their techno-functional and biological properties are highlighted. The role of AG structure and function on health advantages such as anti-tumor, antioxidant, anti-ulcer- anti-diabetic and other activites and also the immunomodulatory effects on in-vivo model systems are overviewed.
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Affiliation(s)
- S Saeidy
- Department of Food Science and Technology, College of Agriculture, Isfahan University of Technology, Isfahan 84156-83111, Iran
| | - B Petera
- Faculté des Sciences de l'Université d'Antsiranana, BP O 201 Antsiranana, Madagascar; Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut Pascal, F-63000 Clermont-Ferrand, France
| | - G Pierre
- Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut Pascal, F-63000 Clermont-Ferrand, France
| | - T A Fenoradosoa
- Faculté des Sciences de l'Université d'Antsiranana, BP O 201 Antsiranana, Madagascar
| | - Djomdi Djomdi
- Department of Renewable Energy, National Advanced School of Engineering of Maroua, University of Maroua, Cameroon
| | - P Michaud
- Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut Pascal, F-63000 Clermont-Ferrand, France.
| | - C Delattre
- Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut Pascal, F-63000 Clermont-Ferrand, France; Institut Universitaire de France (IUF), 1 rue Descartes, 75005 Paris, France
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Přerovská T, Henke S, Bleha R, Spiwok V, Gillarová S, Yvin JC, Ferrières V, Nguema-Ona E, Lipovová P. Arabinogalactan-like Glycoproteins from Ulva lactuca (Chlorophyta) Show Unique Features Compared to Land Plants AGPs. JOURNAL OF PHYCOLOGY 2021; 57:619-635. [PMID: 33338254 DOI: 10.1111/jpy.13121] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Revised: 10/27/2020] [Accepted: 10/30/2020] [Indexed: 05/21/2023]
Abstract
Arabinogalactan proteins (AGPs) encompass a diverse group of plant cell wall proteoglycans, which play an essential role in plant development, signaling, plant-microbe interactions, and many others. Although they are widely distributed throughout the plant kingdom and extensively studied, they remain largely unexplored in the lower plants, especially in seaweeds. Ulva species have high economic potential since various applications were previously described including bioremediation, biofuel production, and as a source of bioactive compounds. This article presents the first experimental confirmation of AGP-like glycoproteins in Ulva species and provides a simple extraction protocol of Ulva lactuca AGP-like glycoproteins, their partial characterization and unique comparison to scarcely described Solanum lycopersicum AGPs. The reactivity with primary anti-AGP antibodies as well as Yariv reagent showed a great variety between Ulva lactuca and Solanum lycopersicum AGP-like glycoproteins. While the amino acid analysis of the AGP-like glycoproteins purified by the β-d-glucosyl Yariv reagent showed a similarity between algal and land plant AGP-like glycoproteins, neutral saccharide analysis revealed unique glycosylation of the Ulva lactuca AGP-like glycoproteins. Surprisingly, arabinose and galactose were not the most prevalent monosaccharides and the most outstanding was the presence of 3-O-methyl-hexose, which has never been described in the AGPs. The exceptional structure of the Ulva lactuca AGP-like glycoproteins implies a specialized adaptation to the marine environment and might bring new insight into the evolution of the plant cell wall.
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Affiliation(s)
- Tereza Přerovská
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technická 3, Prague, 16625, Czech Republic
- Ecole Nationale Supérieure de Chimie de Rennes, CNRS, ISCR-UMR 6226, Univ Rennes, 35000, Rennes, France
| | - Svatopluk Henke
- Department of Carbohydrates and Cerials, University of Chemistry and Technology Prague, Technická 3, Prague, 16625, Czech Republic
| | - Roman Bleha
- Department of Carbohydrates and Cerials, University of Chemistry and Technology Prague, Technická 3, Prague, 16625, Czech Republic
| | - Vojtěch Spiwok
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technická 3, Prague, 16625, Czech Republic
| | - Simona Gillarová
- Department of Carbohydrates and Cerials, University of Chemistry and Technology Prague, Technická 3, Prague, 16625, Czech Republic
| | - Jean-Claude Yvin
- Centre Mondial de l'Innovation Roullier, Laboratoire de Nutrition Végétal, 18 Avenue Franklin Roosevelt, Saint-Malo, 35400, France
| | - Vincent Ferrières
- Ecole Nationale Supérieure de Chimie de Rennes, CNRS, ISCR-UMR 6226, Univ Rennes, 35000, Rennes, France
| | - Eric Nguema-Ona
- Centre Mondial de l'Innovation Roullier, Laboratoire de Nutrition Végétal, 18 Avenue Franklin Roosevelt, Saint-Malo, 35400, France
| | - Petra Lipovová
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technická 3, Prague, 16625, Czech Republic
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Makarova EN, Shakhmatov EG. Structural characteristics of oxalate-soluble polysaccharides from Norway spruce (Picea abies) foliage. Carbohydr Polym 2020; 246:116544. [PMID: 32747233 DOI: 10.1016/j.carbpol.2020.116544] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Revised: 05/14/2020] [Accepted: 05/29/2020] [Indexed: 10/24/2022]
Abstract
Structurally different polymers were derived from Picea abies foliage by successive extraction with water (PAW), HCl solution (PAA) and (NH4)2C2O4 solution (PAO). The P. abies foliage was found to contain basically low-methoxyl pectin extractable with an (NH4)2C2O4 solution. PAW was shown to comprise primarily arabinogalactan-proteins (AGPs); PAA was composed of mixed AGPs and pectic polysaccharides, with the latter prevailing; and polysaccharide PAO isolated in the highest yield included chiefly pectic polysaccharides. The major constituents of PAO were low-methoxyl and low-acetylated 1,4-α-d-galacturonan and partially acetylated RG-I. The sugar side chains of RG-I contained chiefly highly branched 1,5-α-l-arabinan and arabinogalactan type I as a minor constituent. RG-I whose side chains had 1,5-α-l-arabinan represented short regions alternating with non-acetylated and unmethylesterified galacturonan regions. In addition to pectins, polysaccharide PAO contained AGPs, xylanes and glucomannans, indicating that these polysaccharides are in an intimate interaction.
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Affiliation(s)
- Elena N Makarova
- Institute of Chemistry, Federal Research Center "Komi Science Centre of the Ural Branch of the Russian Academy of Sciences", Pervomaiskaya St. 48, Syktyvkar, 167982, Russia.
| | - Evgeny G Shakhmatov
- Institute of Chemistry, Federal Research Center "Komi Science Centre of the Ural Branch of the Russian Academy of Sciences", Pervomaiskaya St. 48, Syktyvkar, 167982, Russia
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Tobias LM, Spokevicius AV, McFarlane HE, Bossinger G. The Cytoskeleton and Its Role in Determining Cellulose Microfibril Angle in Secondary Cell Walls of Woody Tree Species. PLANTS (BASEL, SWITZERLAND) 2020; 9:E90. [PMID: 31936868 PMCID: PMC7020502 DOI: 10.3390/plants9010090] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Revised: 01/06/2020] [Accepted: 01/10/2020] [Indexed: 12/28/2022]
Abstract
Recent advances in our understanding of the molecular control of secondary cell wall (SCW) formation have shed light on molecular mechanisms that underpin domestication traits related to wood formation. One such trait is the cellulose microfibril angle (MFA), an important wood quality determinant that varies along tree developmental phases and in response to gravitational stimulus. The cytoskeleton, mainly composed of microtubules and actin filaments, collectively contribute to plant growth and development by participating in several cellular processes, including cellulose deposition. Studies in Arabidopsis have significantly aided our understanding of the roles of microtubules in xylem cell development during which correct SCW deposition and patterning are essential to provide structural support and allow for water transport. In contrast, studies relating to SCW formation in xylary elements performed in woody trees remain elusive. In combination, the data reviewed here suggest that the cytoskeleton plays important roles in determining the exact sites of cellulose deposition, overall SCW patterning and more specifically, the alignment and orientation of cellulose microfibrils. By relating the reviewed evidence to the process of wood formation, we present a model of microtubule participation in determining MFA in woody trees forming reaction wood (RW).
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Affiliation(s)
- Larissa Machado Tobias
- School of Ecosystem and Forest Sciences, The University of Melbourne, Creswick, Victoria 3363, Australia; (A.V.S.); (G.B.)
| | - Antanas V. Spokevicius
- School of Ecosystem and Forest Sciences, The University of Melbourne, Creswick, Victoria 3363, Australia; (A.V.S.); (G.B.)
| | - Heather E. McFarlane
- Department of Cell and Systems Biology, University of Toronto, Toronto, ON M5S 3B2, Canada
| | - Gerd Bossinger
- School of Ecosystem and Forest Sciences, The University of Melbourne, Creswick, Victoria 3363, Australia; (A.V.S.); (G.B.)
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Lin D, Lopez-Sanchez P, Gidley MJ. Interactions of arabinogalactans with bacterial cellulose during its synthesis: Structure and physical properties. Food Hydrocoll 2019. [DOI: 10.1016/j.foodhyd.2019.06.010] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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9
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Purification, structural characterization of an arabinogalactan from green gram (Vigna radiata) and its role in macrophage activation. J Funct Foods 2018. [DOI: 10.1016/j.jff.2018.09.029] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023] Open
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10
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Structure of acid-extractable polysaccharides of tree greenery of Picea abies. Carbohydr Polym 2018; 199:320-330. [DOI: 10.1016/j.carbpol.2018.07.027] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Revised: 07/09/2018] [Accepted: 07/09/2018] [Indexed: 11/17/2022]
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11
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Structural characteristics of water-soluble polysaccharides from Norway spruce (Picea abies). Carbohydr Polym 2017; 175:699-711. [DOI: 10.1016/j.carbpol.2017.08.022] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2017] [Revised: 08/04/2017] [Accepted: 08/04/2017] [Indexed: 01/17/2023]
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12
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Milewska-Hendel A, Baczewska AH, Sala K, Dmuchowski W, Brągoszewska P, Gozdowski D, Jozwiak A, Chojnacki T, Swiezewska E, Kurczynska E. Quantitative and qualitative characteristics of cell wall components and prenyl lipids in the leaves of Tilia x euchlora trees growing under salt stress. PLoS One 2017; 12:e0172682. [PMID: 28234963 PMCID: PMC5325302 DOI: 10.1371/journal.pone.0172682] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2016] [Accepted: 02/08/2017] [Indexed: 01/11/2023] Open
Abstract
The study was focused on assessing the presence of arabinogalactan proteins (AGPs) and pectins within the cell walls as well as prenyl lipids, sodium and chlorine content in leaves of Tilia x euchlora trees. The leaves that were analyzed were collected from trees with and without signs of damage that were all growing in the same salt stress conditions. The reason for undertaking these investigations was the observations over many years that indicated that there are trees that present a healthy appearance and trees that have visible symptoms of decay in the same habitat. Leaf samples were collected from trees growing in the median strip between roadways that have been intensively salted during the winter season for many years. The sodium content was determined using atomic spectrophotometry, chloride using potentiometric titration and poly-isoprenoids using HPLC/UV. AGPs and pectins were determined using immunohistochemistry methods. The immunohistochemical analysis showed that rhamnogalacturonans I (RG-I) and homogalacturonans were differentially distributed in leaves from healthy trees in contrast to leaves from injured trees. In the case of AGPs, the most visible difference was the presence of the JIM16 epitope. Chemical analyses of sodium and chloride showed that in the leaves from injured trees, the level of these ions was higher than in the leaves from healthy trees. Based on chromatographic analysis, four poly-isoprenoid alcohols were identified in the leaves of T. x euchlora. The levels of these lipids were higher in the leaves from healthy trees. The results suggest that the differences that were detected in the apoplast and symplasm may be part of the defensive strategy of T. x euchlora trees to salt stress, which rely on changes in the chemical composition of the cell wall with respect to the pectic and AGP epitopes and an increased synthesis of prenyl lipids.
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Affiliation(s)
- Anna Milewska-Hendel
- Department of Cell Biology, Faculty of Biology and Environmental Protection, University of Silesia, Katowice, Poland
| | - Aneta H. Baczewska
- Polish Academy of Sciences Botanical Garden–Center for the Conservation of Biological Diversity, Warsaw, Poland
| | - Katarzyna Sala
- Department of Cell Biology, Faculty of Biology and Environmental Protection, University of Silesia, Katowice, Poland
| | - Wojciech Dmuchowski
- Polish Academy of Sciences Botanical Garden–Center for the Conservation of Biological Diversity, Warsaw, Poland
- Warsaw University of Life Sciences–SGGW, Warsaw, Poland
| | - Paulina Brągoszewska
- Institute of Environmental Protection–National Research Institute, Warsaw, Poland
| | | | - Adam Jozwiak
- Institute of Biochemistry and Biophysics–Polish Academy of Sciences, Warsaw, Poland
| | - Tadeusz Chojnacki
- Institute of Biochemistry and Biophysics–Polish Academy of Sciences, Warsaw, Poland
| | - Ewa Swiezewska
- Institute of Biochemistry and Biophysics–Polish Academy of Sciences, Warsaw, Poland
| | - Ewa Kurczynska
- Department of Cell Biology, Faculty of Biology and Environmental Protection, University of Silesia, Katowice, Poland
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Seasonal dynamics of polysaccharides in Norway spruce (Picea abies). Carbohydr Polym 2017; 157:686-694. [DOI: 10.1016/j.carbpol.2016.10.035] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2016] [Revised: 10/12/2016] [Accepted: 10/12/2016] [Indexed: 11/21/2022]
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Makarova EN, Shakhmatov EG, Belyy VA. Structural characteristics of oxalate-soluble polysaccharides of Sosnowsky's hogweed ( Heracleum sosnowskyi Manden). Carbohydr Polym 2016; 153:66-77. [DOI: 10.1016/j.carbpol.2016.07.089] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2016] [Revised: 07/14/2016] [Accepted: 07/20/2016] [Indexed: 10/21/2022]
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Makarova EN, Shakhmatov EG, Udoratina EV, Kutchin AV. Structural and chemical charactertistics of pectins, arabinogalactans, and arabinogalactan proteins from conifers. Russ Chem Bull 2016. [DOI: 10.1007/s11172-015-1011-6] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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16
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Jeyakumar P, Loganathan P, Anderson CWN, Sivakumaran S, McLaren RG. Comparative tolerance of Pinus radiata and microbial activity to copper and zinc in a soil treated with metal-amended biosolids. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2014; 21:3254-3263. [PMID: 24217968 DOI: 10.1007/s11356-013-2271-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2013] [Accepted: 10/22/2013] [Indexed: 06/02/2023]
Abstract
A study was conducted to evaluate the effects of elevated concentrations of copper (Cu) and zinc (Zn) in a soil treated with biosolids previously spiked with these metals on Pinus radiata during a 312-day glasshouse pot trial. The total soil metal concentrations in the treatments were 16, 48, 146 and 232 mg Cu/kg or 36, 141, 430 and 668 mg Zn/kg. Increased total soil Cu concentration increased the soil solution Cu concentration (0.03-0.54 mg/L) but had no effect on leaf and root dry matter production. Increased total soil Zn concentration also increased the soil solution Zn concentration (0.9-362 mg/L). Decreased leaf and root dry matter were recorded above the total soil Zn concentration of 141 mg/kg (soil solution Zn concentration, >4.4 mg/L). A lower percentage of Cu in the soil soluble + exchangeable fraction (5-12 %) and lower Cu(2+) concentration in soil solution (0.001-0.06 μM) relative to Zn (soil soluble + exchangeable fraction, 12-66 %; soil solution Zn(2+) concentration, 4.5-4,419 μM) indicated lower bioavailability of Cu. Soil dehydrogenase activity decreased with every successive level of Cu and Zn applied, but the reduction was higher for Zn than for Cu addition. Dehydrogenase activity was reduced by 40 % (EC40) at the total solution-phase and solid-phase soluble + exchangeable Cu concentrations of 0.5 mg/L and 14.5 mg/kg, respectively. For Zn the corresponding EC50 were 9 mg/L and 55 mg/kg, respectively. Based on our findings, we propose that current New Zealand soil guidelines values for Cu and Zn (100 mg/kg for Cu; 300 mg/kg for Zn) should be revised downwards based on apparent toxicity to soil biological activity (Cu and Zn) and radiata pine (Zn only) at the threshold concentration.
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Affiliation(s)
- Paramsothy Jeyakumar
- Soil and Earth Sciences, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand,
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Ling NXY, Lee J, Ellis M, Liao ML, Mau SL, Guest D, Janssen PH, Kováč P, Bacic A, Pettolino FA. An exo-β-(1→3)-D-galactanase from Streptomyces sp. provides insights into type II arabinogalactan structure. Carbohydr Res 2012; 352:70-81. [PMID: 22464224 PMCID: PMC3419940 DOI: 10.1016/j.carres.2012.02.033] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2011] [Revised: 02/21/2012] [Accepted: 02/28/2012] [Indexed: 11/29/2022]
Abstract
An exo-β-(1→3)-D-galactanase (SGalase1) that specifically cleaves the β-(1→3)-D-galactan backbone of arabinogalactan-proteins (AGPs) was isolated from culture filtrates of a soil Streptomyces sp. Internal peptide sequence information was used to clone and recombinantly express the gene in E. coli. The molecular mass of the isolated enzyme was ~45 kDa, similar to the 48.2 kDa mass predicted from the amino acid sequence. The pI, pH and temperature optima for the enzyme were ~7.45, 3.8 and 48 °C, respectively. The native and recombinant enzymes specifically hydrolysed β-(1→3)-D-galacto-oligo- or poly-saccharides from the upstream (non-reducing) end, typical of an exo-acting enzyme. A second homologous Streptomyces gene (SGalase2) was also cloned and expressed. SGalase2 was similar in size (47.9 kDa) and enzyme activity to SGalase1 but differed in its pH optimum (pH 5). Both SGalase1 and SGalase2 are predicted to belong to the CAZy glycosyl hydrolase family GH 43 based on activity, sequence homology and phylogenetic analysis. The K(m) and V(max) of the native exo-β-(1→3)-D-galactanase for de-arabinosylated gum arabic (dGA) were 19 mg/ml and 9.7 μmol D-Gal/min/mg protein, respectively. The activity of these enzymes is well suited for the study of type II galactan structures and provides an important tool for the investigation of the biological role of AGPs in plants. De-arabinosylated gum arabic (dGA) was used as a model to investigate the use of these enzymes in defining type II galactan structure. Exhaustive hydrolysis of dGA resulted in a limited number of oligosaccharide products with a trisaccharide of Gal(2)GlcA(1) predominating.
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Affiliation(s)
- Naomi X.-Y. Ling
- Plant Cell Biology Research Centre, School of Botany, University of Melbourne, Victoria 3010, Australia
| | - Joanne Lee
- Plant Cell Biology Research Centre, School of Botany, University of Melbourne, Victoria 3010, Australia
| | - Miriam Ellis
- Plant Cell Biology Research Centre, School of Botany, University of Melbourne, Victoria 3010, Australia
| | - Ming-Long Liao
- Plant Cell Biology Research Centre, School of Botany, University of Melbourne, Victoria 3010, Australia
| | - Shaio-Lim Mau
- Plant Cell Biology Research Centre, School of Botany, University of Melbourne, Victoria 3010, Australia
| | - David Guest
- Faculty of Agriculture, Food and Natural Resources, Biomedical Building C81, The University of Sydney, Eveleigh, NSW 2015, Australia
| | - Peter H. Janssen
- Grasslands Research Centre, AgResearch Ltd, Tennent Drive, Private Bag 11008, Palmerston North 4442, New Zealand
| | - Pavol Kováč
- Laboratory of Bioorganic Chemistry, Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), National Institutes of Health, Bethesda, MD 20892-0815, USA
| | - Antony Bacic
- Plant Cell Biology Research Centre, School of Botany, University of Melbourne, Victoria 3010, Australia
- ARC Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Victoria 3010, Australia
| | - Filomena A. Pettolino
- Plant Cell Biology Research Centre, School of Botany, University of Melbourne, Victoria 3010, Australia
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Donaldson LA, Knox JP. Localization of cell wall polysaccharides in normal and compression wood of radiata pine: relationships with lignification and microfibril orientation. PLANT PHYSIOLOGY 2012; 158:642-53. [PMID: 22147521 PMCID: PMC3271756 DOI: 10.1104/pp.111.184036] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
The distribution of noncellulosic polysaccharides in cell walls of tracheids and xylem parenchyma cells in normal and compression wood of Pinus radiata, was examined to determine the relationships with lignification and cellulose microfibril orientation. Using fluorescence microscopy combined with immunocytochemistry, monoclonal antibodies were used to detect xyloglucan (LM15), β(1,4)-galactan (LM5), heteroxylan (LM10 and LM11), and galactoglucomannan (LM21 and LM22). Lignin and crystalline cellulose were localized on the same sections used for immunocytochemistry by autofluorescence and polarized light microscopy, respectively. Changes in the distribution of noncellulosic polysaccharides between normal and compression wood were associated with changes in lignin distribution. Increased lignification of compression wood secondary walls was associated with novel deposition of β(1,4)-galactan and with reduced amounts of xylan and mannan in the outer S2 (S2L) region of tracheids. Xylan and mannan were detected in all lignified xylem cell types (tracheids, ray tracheids, and thick-walled ray parenchyma) but were not detected in unlignified cell types (thin-walled ray parenchyma and resin canal parenchyma). Mannan was absent from the highly lignified compound middle lamella, but xylan occurred throughout the cell walls of tracheids. Using colocalization measurements, we confirmed that polysaccharides containing galactose, mannose, and xylose have consistent correlations with lignification. Low or unsubstituted xylans were localized in cell wall layers characterized by transverse cellulose microfibril orientation in both normal and compression wood tracheids. Our results support the theory that the assembly of wood cell walls, including lignification and microfibril orientation, may be mediated by changes in the amount and distribution of noncellulosic polysaccharides.
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19
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Structure of arabinogalactan from Larix laricina and its reactivity with antibodies directed against type-II-arabinogalactans. Carbohydr Polym 2011. [DOI: 10.1016/j.carbpol.2011.07.006] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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20
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Göllner EM, Ichinose H, Kaneko S, Blaschek W, Classen B. An arabinogalactan-protein from whole grain of Avena sativa L. belongs to the wattle-blossom type of arabinogalactan-proteins. J Cereal Sci 2011. [DOI: 10.1016/j.jcs.2011.01.004] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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21
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Maurer JBB, Bacic A, Pereira-Netto AB, Donatti L, Zawadzki-Baggio SF, Pettolino FA. Arabinogalactan-proteins from cell suspension cultures of Araucaria angustifolia. PHYTOCHEMISTRY 2010; 71:1400-1409. [PMID: 20488499 DOI: 10.1016/j.phytochem.2010.04.021] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2009] [Revised: 01/14/2010] [Accepted: 04/26/2010] [Indexed: 05/29/2023]
Abstract
Arabinogalactan-proteins (AGPs), found in the culture medium of suspension cells of Araucaria angustifolia grown in plant growth regulator-free and plant growth regulator-containing BM media, BM0 and BM2, respectively, were evaluated quantitatively and qualitatively. The concentrated extracellular fractions (CEFs), obtained from suspension cell cultures grown for 20 days in BM0 and BM2 media yielded two fractions, CEF-0 and CEF-2, respectively. CEF-0 and CEF-2 was submitted to selective precipitation using the beta-glucosyl Yariv reagent (beta-GlcY) to isolate AGPs for structural characterization; this yielded fractions designated CEF-0YPF and CEF-2YPF, respectively. The monosaccharide composition analysis established that samples were composed of Rha, Ara, Gal and uronic acid in a molar ratio 3:37:55:5 (CEF-0YPF) and 1:37:58:4 (CEF-2YPF), although trace amounts (<0.5 mol%) of Xyl were also found. Methylation analysis of CEF-YPF fractions showed similar results for both CEF-0YPF and CEF-2YPF, with non-reducing terminal units of Araf, Arap, Galp, Rhap and Xylp, as well as 3-O-substituted and 5-O-substituted Araf units and 3-O-substituted, 6-O-substituted and 3,6-di-O-substituted Galp units. The amino acid composition analysis established Ser, Ala, and Hyp as major amino acids in both samples. In conclusion, this investigation has shown that CEF-0YPF and CEF-2YPF contain macromolecules having typical AGP characteristics, including a Hyp/Ala/Ser-rich protein moiety, a (1-->3) and/or (1-->6) linked beta-d-galactopyranosyl main chain substituted by Gal, Ara, Rha and Xyl residues, and binding affinity for beta-GlcY and monoclonal anti-AGP antibodies.
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Affiliation(s)
- Juliana Bello Baron Maurer
- Department of Biochemistry and Molecular Biology-SCB, Parana Federal University, P.O. Box 19046, 81531-990 Curitiba, PR, Brazil.
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22
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Li X, Wu HX, Southerton SG. Comparative genomics reveals conservative evolution of the xylem transcriptome in vascular plants. BMC Evol Biol 2010; 10:190. [PMID: 20565927 PMCID: PMC2907377 DOI: 10.1186/1471-2148-10-190] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2009] [Accepted: 06/21/2010] [Indexed: 11/30/2022] Open
Abstract
BACKGROUND Wood is a valuable natural resource and a major carbon sink. Wood formation is an important developmental process in vascular plants which played a crucial role in plant evolution. Although genes involved in xylem formation have been investigated, the molecular mechanisms of xylem evolution are not well understood. We use comparative genomics to examine evolution of the xylem transcriptome to gain insights into xylem evolution. RESULTS The xylem transcriptome is highly conserved in conifers, but considerably divergent in angiosperms. The functional domains of genes in the xylem transcriptome are moderately to highly conserved in vascular plants, suggesting the existence of a common ancestral xylem transcriptome. Compared to the total transcriptome derived from a range of tissues, the xylem transcriptome is relatively conserved in vascular plants. Of the xylem transcriptome, cell wall genes, ancestral xylem genes, known proteins and transcription factors are relatively more conserved in vascular plants. A total of 527 putative xylem orthologs were identified, which are unevenly distributed across the Arabidopsis chromosomes with eight hot spots observed. Phylogenetic analysis revealed that evolution of the xylem transcriptome has paralleled plant evolution. We also identified 274 conifer-specific xylem unigenes, all of which are of unknown function. These xylem orthologs and conifer-specific unigenes are likely to have played a crucial role in xylem evolution. CONCLUSIONS Conifers have highly conserved xylem transcriptomes, while angiosperm xylem transcriptomes are relatively diversified. Vascular plants share a common ancestral xylem transcriptome. The xylem transcriptomes of vascular plants are more conserved than the total transcriptomes. Evolution of the xylem transcriptome has largely followed the trend of plant evolution.
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Affiliation(s)
- Xinguo Li
- CSIRO Plant Industry, GPO Box 1600, Canberra ACT 2601, Australia
| | - Harry X Wu
- CSIRO Plant Industry, GPO Box 1600, Canberra ACT 2601, Australia
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Altaner CM, Tokareva EN, Jarvis MC, Harris PJ. Distribution of (1->4)-beta-galactans, arabinogalactan proteins, xylans and (1->3)-beta-glucans in tracheid cell walls of softwoods. TREE PHYSIOLOGY 2010; 30:782-93. [PMID: 20382964 DOI: 10.1093/treephys/tpq021] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Polysaccharides were located in the walls of normal and compression wood tracheids of Pinus radiata (radiata pine), Picea sitchensis (Sitka spruce) and Picea abies (Norway spruce) by transmission electron microscopy using immunogold labelling with monoclonal antibodies to (1-->4)-beta-galactan (LM5), (1-->3)-beta-glucan, arabinogalactan proteins (AGPs) (MAC207) and heteroxylans (LM10 and LM11). In fully differentiated compression wood tracheids, (1-->4)-beta-galactan was found in the S2((L)) layer and, to a smaller extent, at the interface between the compound middle lamella and the S1 layer. (1-->4)-beta-Galactan appeared to be displaced from, or modified in, the S1 layer during cell wall formation. (1-->3)-beta-Glucan (callose) was confined to the helical cavities in the inner S2 layer of severe compression wood. MAC207 AGP glycan epitope was found exclusively in the S1 and S3 layers of normal wood tracheids and in the S1 and inner S2 layers of compression wood tracheids. Binding of LM10, which specifically recognizes unsubstituted or low-substituted xylans, occurred at similar locations to the MAC207 epitope, whereas binding of LM11, which recognizes more highly substituted as well as unsubstituted xylans, occurred throughout the tracheid walls with the exception of the primary wall. Immunogold labelling showed that the different wall layers of softwood tracheids have different polysaccharide compositions which change abruptly during cell wall formation.
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Affiliation(s)
- Clemens M Altaner
- School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland Mail Centre, Auckland 1142, New Zealand.
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Couturier J, de Faÿ E, Fitz M, Wipf D, Blaudez D, Chalot M. PtAAP11, a high affinity amino acid transporter specifically expressed in differentiating xylem cells of poplar. JOURNAL OF EXPERIMENTAL BOTANY 2010; 61:1671-82. [PMID: 20190041 DOI: 10.1093/jxb/erq036] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Amino acids are the currency of nitrogen exchange between source and sink tissues in plants and constitute a major source of the components used for cellular growth and differentiation. The characterization of a new amino acid transporter belonging to the amino acid permease (AAP) family, AAP11, expressed in the perennial species Populus trichocarpa is reported here. PtAAP11 expression analysis was performed by semi-quantitative RT-PCR and GUS activity after poplar transformation. PtAAP11 function was studied in detail by heterologous expression in yeast. The poplar genome contains 14 putative AAPs which is quite similar to other species analysed except Arabidopsis. PtAAP11 was mostly expressed in differentiating xylem cells in different organs. Functional characterization demonstrated that PtAAP11 was a high affinity amino acid transporter, more particularly for proline. Compared with other plant amino acid transporters, PtAAP11 represents a novel high-affinity system for proline. Thus, the functional characterization and expression studies suggest that PtAAP11 may play a major role in xylogenesis by providing proline required for xylem cell wall proteins. The present study provides important information highlighting the role of a specific amino acid transporter in xylogenesis in poplar.
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Affiliation(s)
- Jérémy Couturier
- UMR INRA/UHP 1136 Interactions Arbres-Microorganismes, IFR 110 Ecosystèmes Forestiers, Agroressources, Bioprocédés et Alimentation, Nancy University, Faculté des Sciences et Techniques, BP 70239, F-54506 Vandoeuvre-les-Nancy Cedex, France.
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Göllner EM, Blaschek W, Classen B. Structural investigations on arabinogalactan-protein from wheat, isolated with Yariv reagent. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2010; 58:3621-3626. [PMID: 20163180 DOI: 10.1021/jf903843f] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
For the first time a pure arabinogalactan-protein (AGP) could be isolated from whole grain of wheat ( Triticum aestivum L.) by performing a double precipitation with beta-glucosyl Yariv reagent. The putative bioactive AGP has been characterized with regard to its polysaccharide and protein parts. Analytical investigations by GLC-MS and (13)C NMR revealed a carbohydrate moiety consisting of a 1,3-Galp backbone, linked in position 6 to short 1,6-Galp-chains, terminating in Araf. In the protein part, a high content of hydroxyproline has been found, probably responsible for linkage between protein and polysaccharide moieties. The molecular mass of AGP has been determined by size exclusion chromatography with laser light scattering detection and found to be 125 kDa. Alkaline hydrolysis of the protein resulted in single carbohydrate moieties with a molecular mass of about 20 kDa, indicating that AGP from whole grain of wheat belongs to the wattle blossom type of AGPs.
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Affiliation(s)
- Esther M Göllner
- Pharmaceutical Institute, Department of Pharmaceutical Biology, Christian-Albrechts-University of Kiel, Gutenbergstrasse 76, Kiel, Germany.
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Ling NXY, Pettolino F, Liao ML, Bacic A. Preparation of a new chromogenic substrate to assay for beta-galactanases that hydrolyse type II arabino-3,6-galactans. Carbohydr Res 2009; 344:1941-6. [PMID: 19717142 DOI: 10.1016/j.carres.2009.07.014] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2009] [Revised: 07/24/2009] [Accepted: 07/27/2009] [Indexed: 11/24/2022]
Abstract
A chromogenic assay using RB5-dGA, Reactive Black 5 (RB5) dye covalently coupled to de-arabinosylated gum arabic (dGA), was developed for rapid screening of beta-galactanases. dGA was prepared by partial acid hydrolysis (0.25M trifluoroacetic acid for 2h at 90-95 degrees C) of gum Arabic (GA) from Acacia senegal. The dGA exhibited a median molecular mass of approximately 10kDa, corresponding to a degree of polymerisation (DP) approximately 60. It was devoid of Ara residues, and contained mostly Galp (68mol%) together with GlcpA (30mol%). The Galp residues were (1,6)- (34mol%), (1,3)- (3mol%) and (1,3,6)- (26mol%) linked, and the GlcAp residues were primarily terminal (28mol%) together with a small amount of (1,4)-linked (2mol%), as expected for a type II (3,6)-galactan. The new chromogenic assay is simple, cost effective, relatively sensitive, and is specific for either beta-(1-->3)- and/or beta-(1-->6)-d-galactanases. It will enable routine large-scale screening of beta-galactanases from crude enzyme preparations and microorganism cultures, and is suitable for profiling activity during purification processes.
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