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Zhu J, Ren W, Guo F, Wang H, Yu Y. Revealing spatial distribution and accessibility of cell wall polymers in bamboo through chemical imaging and mild chemical treatments. Carbohydr Polym 2024; 339:122261. [PMID: 38823925 DOI: 10.1016/j.carbpol.2024.122261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Revised: 05/08/2024] [Accepted: 05/11/2024] [Indexed: 06/03/2024]
Abstract
Understanding the distribution and accessibility of polymers within plant cell walls is crucial for addressing biomass recalcitrance in lignocellulosic materials. In this work, Imaging Fourier Transform Infrared (FTIR) and Raman spectroscopy, coupled with targeted chemical treatments, were employed to investigate cell wall polymer distribution in two bamboo species at both tissue and cell wall levels. Tissue-level Imaging FTIR revealed significant disparities in the distribution and chemical activity of cell wall polymers between the fibrous sheath and fibrous strand. At the cell wall level, Imaging Raman spectroscopy delineated a distinct difference between the secondary wall and intercellular layer, with the latter containing higher levels of lignin, hydroxycinnamic acid (HCA), and xylan, and lower cellulose. Mild acidified sodium chlorite treatment led to partial removal of lignin, HCA, and xylan from the intercellular layer, albeit to a lesser extent than alkaline treatment, indicating susceptibility of these polymers to chemical treatment. In contrast, lignin in the secondary wall exhibited limited reactivity to acidified sodium chlorite but was slightly removed by alkaline treatment, suggesting stable chemical properties with slight alkaline intolerance. These findings provide valuable insights into the inherent design mechanism of plant cells and their efficient utilization.
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Affiliation(s)
- Jiawei Zhu
- Bamboo Industry Institute, Zhejiang A&F University, Hangzhou 311300, PR China; College of Chemistry and Materials Engineering, Zhejiang A&F University, Hangzhou 311300, PR China
| | - Wenting Ren
- College of Material Engineering, Fujian Agriculture and Forestry University, Fuzhou 350002, PR China
| | - Fei Guo
- College of Material Engineering, Fujian Agriculture and Forestry University, Fuzhou 350002, PR China; National Forestry and Grassland Administration Key Laboratory of Plant Fiber Functional Materials, Fuzhou 350108, PR China
| | - Hankun Wang
- Institute of New Bamboo and Rattan Based Materials, International Center for Bamboo and Rattan, Beijing 100020, PR China
| | - Yan Yu
- College of Material Engineering, Fujian Agriculture and Forestry University, Fuzhou 350002, PR China; National Forestry and Grassland Administration Key Laboratory of Plant Fiber Functional Materials, Fuzhou 350108, PR China.
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Pinheiro SKDP, Pontes MDS, Miguel TBAR, Grillo R, Souza Filho AGD, Miguel EDC. Nanoparticles and plants: A focus on analytical characterization techniques. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2024; 348:112225. [PMID: 39142607 DOI: 10.1016/j.plantsci.2024.112225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 07/05/2024] [Accepted: 08/11/2024] [Indexed: 08/16/2024]
Abstract
Nanotechnology has brought about significant progress through the use of goods based on nanomaterials. However, concerns remain about the accumulation of these materials in the environment and their potential toxicity to living organisms. Plants have the ability to take in nanomaterials (NMs), which can cause changes in their physiology and morphology. On the other hand, nanoparticles (NPs) have been used to increase plant development and control pests in agriculture by including them into agrochemicals. The challenges of the interaction, internalization, and accumulation of NMs within plant tissues are enormous, mainly because of the various characteristics of NMs and the absence of reliable analytical tools. As our knowledge of the interactions between NMs and plant cells expands, we are able to create novel NMs that are tailored, targeted, and designed to be safe, thus minimizing the environmental consequences of nanomaterials. This review provides a thorough examination and comparison of the main microscopy techniques, spectroscopic methods, and far-field super-resolution methodologies used to examine nanomaterials within the cell walls of plants.
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Affiliation(s)
- Sergimar Kennedy de Paiva Pinheiro
- Biomaterials Laboratory, Department of Metallurgical Engineering and Materials and Analytical Center, Federal University of Ceará (UFC), Fortaleza, CE, Brazil
| | - Montcharles da Silva Pontes
- Optics and Photonics Group, SISFOTON Lab, Institute of Physics, Federal University of Mato Grosso do Sul (UFMS), Campo Grande, MS, Brazil
| | | | - Renato Grillo
- Environmental Nanochemistry Group, Department of Physics and Chemistry, São Paulo State University (UNESP), Ilha Solteira, SP, Brazil
| | | | - Emilio de Castro Miguel
- Biomaterials Laboratory, Department of Metallurgical Engineering and Materials and Analytical Center, Federal University of Ceará (UFC), Fortaleza, CE, Brazil.
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3
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Guo Y, Jiao L, Wang J, Ma L, Lu Y, Zhang Y, Guo J, Yin Y. Analyses of high spatial resolution datasets identify genes associated with multi-layered secondary cell wall thickening in Pinus bungeana. ANNALS OF BOTANY 2024; 133:953-968. [PMID: 38366549 PMCID: PMC11089263 DOI: 10.1093/aob/mcae023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Accepted: 02/14/2024] [Indexed: 02/18/2024]
Abstract
BACKGROUND AND AIMS Secondary cell wall (SCW) thickening is a major cellular developmental stage determining wood structure and properties. Although the molecular regulation of cell wall deposition during tracheary element differentiation has been well established in primary growth systems, less is known about the gene regulatory processes involved in the multi-layered SCW thickening of mature trees. METHODS Using third-generation [long-read single-molecule real-time (SMRT)] and second-generation [short-read sequencing by synthesis (SBS)] sequencing methods, we established a Pinus bungeana transcriptome resource with comprehensive functional and structural annotation for the first time. Using these approaches, we generated high spatial resolution datasets for the vascular cambium, xylem expansion regions, early SCW thickening, late SCW thickening and mature xylem tissues of 71-year-old Pinus bungeana trees. KEY RESULTS A total of 79 390 non-redundant transcripts, 31 808 long non-coding RNAs and 5147 transcription factors were annotated and quantified in different xylem tissues at all growth and differentiation stages. Furthermore, using this high spatial resolution dataset, we established a comprehensive transcriptomic profile and found that members of the NAC, WRKY, SUS, CESA and LAC gene families are major players in early SCW formation in tracheids, whereas members of the MYB and LBD transcription factor families are highly expressed during late SCW thickening. CONCLUSIONS Our results provide new molecular insights into the regulation of multi-layered SCW thickening in conifers. The high spatial resolution datasets provided can serve as important gene resources for improving softwoods.
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Affiliation(s)
- Yu Guo
- Wood Anatomy and Utilization Department, Research Institute of Wood Industry, Chinese Academy of Forestry, Beijing 100091, China
- Wood Specimen Resource Center (WOODPEDIA) of National Forestry and Grassland Administration, Beijing 100091, China
| | - Lichao Jiao
- Wood Anatomy and Utilization Department, Research Institute of Wood Industry, Chinese Academy of Forestry, Beijing 100091, China
- Wood Specimen Resource Center (WOODPEDIA) of National Forestry and Grassland Administration, Beijing 100091, China
| | - Jie Wang
- Wood Anatomy and Utilization Department, Research Institute of Wood Industry, Chinese Academy of Forestry, Beijing 100091, China
- Wood Specimen Resource Center (WOODPEDIA) of National Forestry and Grassland Administration, Beijing 100091, China
| | - Lingyu Ma
- Wood Anatomy and Utilization Department, Research Institute of Wood Industry, Chinese Academy of Forestry, Beijing 100091, China
- Wood Specimen Resource Center (WOODPEDIA) of National Forestry and Grassland Administration, Beijing 100091, China
| | - Yang Lu
- Wood Anatomy and Utilization Department, Research Institute of Wood Industry, Chinese Academy of Forestry, Beijing 100091, China
- Wood Specimen Resource Center (WOODPEDIA) of National Forestry and Grassland Administration, Beijing 100091, China
| | - Yonggang Zhang
- Wood Anatomy and Utilization Department, Research Institute of Wood Industry, Chinese Academy of Forestry, Beijing 100091, China
- Wood Specimen Resource Center (WOODPEDIA) of National Forestry and Grassland Administration, Beijing 100091, China
| | - Juan Guo
- Wood Anatomy and Utilization Department, Research Institute of Wood Industry, Chinese Academy of Forestry, Beijing 100091, China
- Wood Specimen Resource Center (WOODPEDIA) of National Forestry and Grassland Administration, Beijing 100091, China
| | - Yafang Yin
- Wood Anatomy and Utilization Department, Research Institute of Wood Industry, Chinese Academy of Forestry, Beijing 100091, China
- Wood Specimen Resource Center (WOODPEDIA) of National Forestry and Grassland Administration, Beijing 100091, China
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Clark KR, Goldberg Oppenheimer P. Vibrational spectroscopic profiling of biomolecular interactions between oak powdery mildew and oak leaves. SOFT MATTER 2024; 20:959-970. [PMID: 38189096 PMCID: PMC10828924 DOI: 10.1039/d3sm01392h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Accepted: 01/02/2024] [Indexed: 01/09/2024]
Abstract
Oak powdery mildew, caused by the biotrophic fungus Erysiphe alphitoides, is a prevalent disease affecting oak trees, such as English oak (Quercus robur). While mature oak populations are generally less susceptible to this disease, it can endanger young oak seedlings and new leaves on mature trees. Although disruptions of photosynthate and carbohydrate translocation have been observed, accurately detecting and understanding the specific biomolecular interactions between the fungus and the leaves of oak trees is currently lacking. Herein, via hybrid Raman spectroscopy combined with an advanced artificial neural network algorithm, the underpinning biomolecular interactions between biological soft matter, i.e., Quercus robur leaves and Erysiphe alphitoides, are investigated and profiled, generating a spectral library and shedding light on the changes induced by fungal infection and the tree's defence response. The adaxial surfaces of oak leaves are categorised based on either the presence or absence of Erysiphe alphitoides mildew and further distinguishing between covered or not covered infected leaf tissues, yielding three disease classes including healthy controls, non-mildew covered and mildew-covered. By analysing spectral changes between each disease category per tissue type, we identified important biomolecular interactions including disruption of chlorophyll in the non-vein and venule tissues, pathogen-induced degradation of cellulose and pectin and tree-initiated lignification of cell walls in response, amongst others, in lateral vein and mid-vein tissues. Via our developed computational algorithm, the underlying biomolecular differences between classes were identified and allowed accurate and rapid classification of disease with high accuracy of 69.6% for non-vein, 73.5% for venule, 82.1% for lateral vein and 85.6% for mid-vein tissues. Interfacial wetting differences between non-mildew covered and mildew-covered tissue were further analysed on the surfaces of non-vein and venule tissue. The overall results demonstrated the ability of Raman spectroscopy, combined with advanced AI, to act as a powerful and specific tool to probe foliar interactions between forest pathogens and host trees with the simultaneous potential to probe and catalogue molecular interactions between biological soft matter, paving the way for exploring similar relations in broader forest tree-pathogen systems.
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Affiliation(s)
- Kieran R Clark
- School of Chemical Engineering, Advanced Nanomaterials Structures and Applications Laboratories, College of Engineering and Physical Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
- Birmingham Institute of Forest Research, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
| | - Pola Goldberg Oppenheimer
- School of Chemical Engineering, Advanced Nanomaterials Structures and Applications Laboratories, College of Engineering and Physical Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
- Healthcare Technologies Institute, Institute of Translational Medicine, Mindelsohn Way, Birmingham, B15 2TH, UK
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Li M, Zhang L, Jiang LL, Zhao ZB, Long YH, Chen DM, Bin J, Kang C, Liu YJ. Label-free Raman microspectroscopic imaging with chemometrics for cellular investigation of apple ring rot and nondestructive early recognition using near-infrared reflection spectroscopy with machine learning. Talanta 2024; 267:125212. [PMID: 37741265 DOI: 10.1016/j.talanta.2023.125212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Revised: 08/16/2023] [Accepted: 09/14/2023] [Indexed: 09/25/2023]
Abstract
Apple ring rot caused by Botryosphaeria dothidea can cause fruit decay during the growth and storage stages of apple fruit. Understanding the infection process and cellular defense response at the cellular micro-level holds immense importance in the field of prevention and control. Consequently, there is a pressing need to develop suitable chemical imaging analysis methods. Here we proposed a label-free, high-throughput imaging method for cellular investigation of apple fruit ring rot infected by Botryosphaeria dothidea, based on confocal Raman microspectroscopic imaging technology combined with multivariate curve resolution-alternating least squares algorithm (MCR-ALS). We conducted Raman measurements on every apple fruit and obtain an image cube. This cube was then unfolded into an augmented matrix in a column-wise manner. We proceeded with simultaneous MCR-ALS analysis, resolving the single-substance spectrum and concentration profile from the mixed signals. Lastly, the accurate and pure molecular imaging of low methoxyl pectin, high methoxyl pectin, cellulose, lignin, and phenols were realized by refolding the resolved concentration data to construct the composition image. Thereafter, we realized the study of the spatial-temporal changes distribution of the above substances in the cuticle and cell wall of green and red apples at different stages of infection. The imaging method proposed in this paper is expected to provide a chemical imaging strategy for studying pathogen infection process and fruit defense response at the cellular level. In addition, by utilizing a fiber-optic probe near-infrared reflection spectrometer in conjunction with machine learning, we developed a rapid and non-destructive classification method. This method allows for the timely identification of apples exhibiting early infection by Botryosphaeria dothidea. Notably, both principal component analysis-quadratic discriminant analysis and support vector machine achieved a classification accuracy of 100%.
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Affiliation(s)
- Mei Li
- School of Chemistry and Chemical Engineering, Guizhou University, Guiyang, 550025, China
| | - Lu Zhang
- Engineering and Technology Research Center of Kiwifruit, Guizhou University, Guiyang, 550025, China
| | - Ling-Li Jiang
- School of Chemistry and Chemical Engineering, Guizhou University, Guiyang, 550025, China
| | - Zhi-Bo Zhao
- Engineering and Technology Research Center of Kiwifruit, Guizhou University, Guiyang, 550025, China
| | - You-Hua Long
- Engineering and Technology Research Center of Kiwifruit, Guizhou University, Guiyang, 550025, China
| | - Dong-Mei Chen
- School of Chemistry and Chemical Engineering, Guizhou University, Guiyang, 550025, China
| | - Jun Bin
- School of Chemistry and Chemical Engineering, Guizhou University, Guiyang, 550025, China
| | - Chao Kang
- School of Chemistry and Chemical Engineering, Guizhou University, Guiyang, 550025, China.
| | - Ya-Juan Liu
- Key Laboratory of Molecular Target & Clinical Pharmacology, the NMPA & State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, 511436, China.
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Veber A, Zancajo VMR, Puskar L, Schade U, Kneipp J. In situ infrared imaging of the local orientation of cellulose fibrils in plant secondary cell walls. Analyst 2023; 148:4138-4147. [PMID: 37496329 DOI: 10.1039/d3an00897e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/28/2023]
Abstract
The mechanical and chemical properties of plant cell walls greatly rely on the supramolecular assembly of cellulose fibrils. To study the local orientation of cellulose in secondary plant cell walls, diffraction limited infrared (IR) micro-spectroscopic mapping experiments were conducted at different orientation of transverse leaf section of the grass Sorghum bicolor with respect to the polarization direction of the IR radiation. Two-dimensional maps, based on polarization-sensitive absorption bands of cellulose were obtained for different polarization angles. They reveal a significant degree of anisotropy of the cellulose macromolecules as well as of other biopolymers in sclerenchyma and xylem regions of the cross section. Quantification of the signals assigned to polarization sensitive vibrational modes allowed to determine the preferential orientation of the sub-micron cellulose fibrils in single cell walls. A sample of crystalline nano-cellulose comprising both a single microcrystal as well as unordered layers of nanocrystals was used for validation of the approach. The results demonstrate that diffraction limited IR micro-spectroscopy can be used to study hierarchically structured materials with complex anisotropic behavior.
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Affiliation(s)
- Alexander Veber
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany.
- Institute for Electronic Structure Dynamics, Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Albert-Einstein-Straße 15, 12489 Berlin, Germany
| | - Victor M R Zancajo
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany.
| | - Ljiljana Puskar
- Institute for Electronic Structure Dynamics, Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Albert-Einstein-Straße 15, 12489 Berlin, Germany
| | - Ulrich Schade
- Institute for Electronic Structure Dynamics, Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Albert-Einstein-Straße 15, 12489 Berlin, Germany
| | - Janina Kneipp
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany.
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Davoudpour Y, Kümmel S, Musat N, Richnow HH, Schmidt M. Tracking deuterium uptake in hydroponically grown maize roots using correlative helium ion microscopy and Raman micro-spectroscopy. PLANT METHODS 2023; 19:71. [PMID: 37452400 PMCID: PMC10347822 DOI: 10.1186/s13007-023-01040-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Accepted: 06/19/2023] [Indexed: 07/18/2023]
Abstract
BACKGROUND Investigations into the growth and self-organization of plant roots is subject to fundamental and applied research in various areas such as botany, agriculture, and soil science. The growth activity of the plant tissue can be investigated by isotope labeling experiments with heavy water and subsequent detection of the deuterium in non-exchangeable positions incorporated into the plant biomass. Commonly used analytical methods to detect deuterium in plants are based on mass-spectrometry or neutron-scattering and they either suffer from elaborated sample preparation, destruction of the sample during analysis, or low spatial resolution. Confocal Raman micro-spectroscopy (CRM) can be considered a promising method to overcome the aforementioned challenges. The substitution of hydrogen with deuterium results in the measurable shift of the CH-related Raman bands. By employing correlative approaches with a high-resolution technique, such as helium ion microscopy (HIM), additional structural information can be added to CRM isotope maps and spatial resolution can be further increased. For that, it is necessary to develop a comprehensive workflow from sample preparation to data processing. RESULTS A workflow to prepare and analyze roots of hydroponically grown and deuterium labeled Zea mays by correlative HIM-CRM micro-analysis was developed. The accuracy and linearity of deuterium detection by CRM were tested and confirmed with samples of deuterated glucose. A set of root samples taken from deuterated Zea mays in a time-series experiment was used to test the entire workflow. The deuterium content in the roots measured by CRM was close to the values obtained by isotope-ratio mass spectrometry. As expected, root tips being the most actively growing root zone had incorporated the highest amount of deuterium which increased with increasing time of labeling. Furthermore, correlative HIM-CRM analysis allowed for obtaining the spatial distribution pattern of deuterium and lignin in root cross-sections. Here, more active root zones with higher deuterium incorporation showed less lignification. CONCLUSIONS We demonstrated that CRM in combination with deuterium labeling can be an alternative and reliable tool for the analysis of plant growth. This approach together with the developed workflow has the potential to be extended to complex systems such as plant roots grown in soil.
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Affiliation(s)
- Yalda Davoudpour
- Department of Isotope Biogeochemistry, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany.
| | - Steffen Kümmel
- Department of Isotope Biogeochemistry, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Niculina Musat
- Department of Isotope Biogeochemistry, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Hans Hermann Richnow
- Department of Isotope Biogeochemistry, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Matthias Schmidt
- Department of Isotope Biogeochemistry, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany
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González Moreno A, Domínguez E, Mayer K, Xiao N, Bock P, Heredia A, Gierlinger N. 3D (x-y-t) Raman imaging of tomato fruit cuticle: Microchemistry during development. PLANT PHYSIOLOGY 2023; 191:219-232. [PMID: 35972400 PMCID: PMC9806558 DOI: 10.1093/plphys/kiac369] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Accepted: 07/15/2022] [Indexed: 05/20/2023]
Abstract
The cuticle is a protective extracellular matrix that covers the above-ground epidermis of land plants. Here, we studied the cuticle of tomato (Solanum lycopersicum L.) fruits in situ using confocal Raman microscopy. Microsections from cuticles isolated at different developmental stages were scanned to visualize cuticle components with a spatial resolution of 342 nm by univariate and multivariate data analysis. Three main components, cutin, polysaccharides, and aromatics, were identified, with the latter exhibiting the strongest Raman scattering intensity. Phenolic acids and flavonoids were differentiated within the cuticle, and three schematic cuticle models were identified during development. Phenolic acids were found across the entire cuticle at the earliest stage of development, i.e. during the formation of the procuticle layer. Based on a mixture analysis with reference component spectra, the phenolic acids were identified as mainly esterified p-coumaric acid together with free p-hydroxybenzoic acid. During the cell expansion period of growth, phenolic acids accumulated in an outermost layer of the cuticle and in the middle region of the pegs. In these stages of development, cellulose and pectin were detected next to the inner cuticle region, close to the epidermal cell where flavonoid impregnation started during ripening. In the first ripening stage, chalconaringenin was observed, while methoxylated chalcones were chosen by the algorithm to fit the mature cuticle spectra. The colocation of carbohydrates, esterified p-coumaric acid, and methoxylated chalconaringenin suggests that the latter two link polysaccharide and cutin domains. Elucidating the different distribution of aromatics within the cuticle, suggests important functions: (1) overall impregnation conferring mechanical and thermal functions (2) the outermost phenolic acid layer displaying UV-B protection of the plant tissue.
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Affiliation(s)
| | - Eva Domínguez
- IHSM-UMA-CSIC La Mayora, Plant breeding and Biotechnology, CSIC, 29750 Algarrobo-Costa, Málaga, Spain
| | - Konrad Mayer
- Department of Nanobiotechnology, BOKU-University of Natural Resources and Life Science, Vienna, Muthgasse 11, 1190 Vienna, Austria
| | - Nannan Xiao
- Department of Nanobiotechnology, BOKU-University of Natural Resources and Life Science, Vienna, Muthgasse 11, 1190 Vienna, Austria
| | - Peter Bock
- Department of Nanobiotechnology, BOKU-University of Natural Resources and Life Science, Vienna, Muthgasse 11, 1190 Vienna, Austria
| | - Antonio Heredia
- IHSM-UMA-CSIC La Mayora, Departamento de Biología Molecular y Bioquímica, Universidad de Málaga, 29071, Málaga, Spain
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Sanaeifar A, Ye D, Li X, Luo L, Tang Y, He Y. A Spatial-Temporal Analysis of Cellular Biopolymers on Leaf Blight-Infected Tea Plants Using Confocal Raman Microspectroscopy. FRONTIERS IN PLANT SCIENCE 2022; 13:846484. [PMID: 35519809 PMCID: PMC9062664 DOI: 10.3389/fpls.2022.846484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Accepted: 03/25/2022] [Indexed: 06/14/2023]
Abstract
The objective of the present study was to characterize the temporal and spatial variation of biopolymers in cells infected by the tea leaf blight using confocal Raman microspectroscopy. We investigated the biopolymers on serial sections of the infection part, and four sections corresponding to different stages of infection were obtained for analysis. Raman spectra extracted from four selected regions (circumscribing the vascular bundle) were analyzed in detail to enable a semi-quantitative comparison of biopolymers on a micron-scale. As the infection progressed, lignin and other phenolic compounds decreased in the vascular bundle, while they increased in both the walls of the bundle sheath cells as well as their intracellular components. The amount of cellulose and other polysaccharides increased in all parts as the infection developed. The variations in the content of lignin and cellulose in different tissues of an individual plant may be part of the reason for the plant's disease resistance. Through wavelet-based data mining, two-dimensional chemical images of lignin, cellulose and all biopolymers were quantified by integrating the characteristic spectral bands ranging from 1,589 to 1,607 cm-1, 1,087 to 1,100 cm-1, and 2,980 to 2,995 cm-1, respectively. The chemical images were consistent with the results of the semi-quantitative analysis, which indicated that the distribution of lignin in vascular bundle became irregular in sections with severe infection, and a substantial quantity of lignin was detected in the cell wall and inside the bundle sheath cell. In serious infected sections, cellulose was accumulated in vascular bundles and distributed within bundle sheath cells. In addition, the distribution of all biopolymers showed that there was a tylose substance produced within the vascular bundles to prevent the further development of pathogens. Therefore, confocal Raman microspectroscopy can be used as a powerful approach for investigating the temporal and spatial variation of biopolymers within cells. Through this method, we can gain knowledge about a plant's defense mechanisms against fungal pathogens.
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Affiliation(s)
- Alireza Sanaeifar
- Fujian Colleges and Universities Engineering Research Center of Modern Agricultural Equipment, Fujian Agriculture and Forestry University, Fuzhou, China
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
| | - Dapeng Ye
- Fujian Colleges and Universities Engineering Research Center of Modern Agricultural Equipment, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Xiaoli Li
- Fujian Colleges and Universities Engineering Research Center of Modern Agricultural Equipment, Fujian Agriculture and Forestry University, Fuzhou, China
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
| | - Liubin Luo
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
| | - Yu Tang
- Academy of Interdisciplinary Studies, Guangdong Polytechnic Normal University, Guangzhou, China
| | - Yong He
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
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Bock P, Felhofer M, Mayer K, Gierlinger N. A Guide to Elucidate the Hidden Multicomponent Layered Structure of Plant Cuticles by Raman Imaging. FRONTIERS IN PLANT SCIENCE 2021; 12:793330. [PMID: 34975980 PMCID: PMC8718554 DOI: 10.3389/fpls.2021.793330] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Accepted: 11/09/2021] [Indexed: 05/29/2023]
Abstract
The cuticle covers almost all plant organs as the outermost layer and serves as a transpiration barrier, sunscreen, and first line of defense against pathogens. Waxes, fatty acids, and aromatic components build chemically and structurally diverse layers with different functionality. So far, electron microscopy has elucidated structure, while isolation, extraction, and analysis procedures have revealed chemistry. With this method paper, we close the missing link by demonstrating how Raman microscopy gives detailed information about chemistry and structure of the native cuticle on the microscale. We introduce an optimized experimental workflow, covering the whole process of sample preparation, Raman imaging experiment, data analysis, and interpretation and show the versatility of the approach on cuticles of a spruce needle, a tomato peel, and an Arabidopsis stem. We include laser polarization experiments to deduce the orientation of molecules and multivariate data analysis to separate cuticle layers and verify their molecular composition. Based on the three investigated cuticles, we discuss the chemical and structural diversity and validate our findings by comparing models based on our spectroscopic data with the current view of the cuticle. We amend the model by adding the distribution of cinnamic acids and flavonoids within the cuticle layers and their transition to the epidermal layer. Raman imaging proves as a non-destructive and fast approach to assess the chemical and structural variability in space and time. It might become a valuable tool to tackle knowledge gaps in plant cuticle research.
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Affiliation(s)
| | | | | | - Notburga Gierlinger
- Department of Nanobiotechnology, Institute of Biophysics, University of Natural Resources and Life Sciences, Vienna, Austria
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Zhao X, Xu M, Zhang W, Liu G, Tong L. Identification of zinc pollution in rice plants based on two characteristic variables. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 261:120043. [PMID: 34119774 DOI: 10.1016/j.saa.2021.120043] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Revised: 05/07/2021] [Accepted: 05/31/2021] [Indexed: 06/12/2023]
Abstract
Traditional chemical methods used to measure the zinc content in rice plants are time-consuming, laborious, requires reagents, and have a limited monitoring range, while the Raman spectroscopy method has the advantage of being fast, non-destructive, and requires no reagents. Unfortunately, the identification accuracy of the Raman partial least squares (PLS) model based on principal components is only 53.33%. To boost this, a One-Way ANOVA method was used to extract the characteristic variables in the Raman spectra. Based on these Raman variables, a model for identifying zinc stressed samples was established. The identification accuracy was improved to 70% but still fell short of the measurement requirements. To further enhance these results, the Raman spectrum was decomposed into components based on the Hilbert Vibration Decomposition (HVD) method. Using characteristic variables of the Raman spectrum and its HVD components to establish a PLS model, the identification accuracy of the test set is raised to 90.25%. These results are a significant improvement from those obtained using a model solely based on the Raman spectral characteristic variables, revealing that HVD components provide highly effective identification information. A Raman modeling method based on the characteristic variables of the HVD component is an innovative way for improving the accuracy of Raman detection, especially for the measurement of trace substances.
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Affiliation(s)
- Xiaoyu Zhao
- Information and Electrical Engineering College, Heilongjiang Bayi Agricultural University, Daqing 163319, People's Republic of China.
| | - Ming Xu
- Information and Electrical Engineering College, Heilongjiang Bayi Agricultural University, Daqing 163319, People's Republic of China
| | - Wei Zhang
- Information and Electrical Engineering College, Heilongjiang Bayi Agricultural University, Daqing 163319, People's Republic of China
| | - Guoyi Liu
- Information and Electrical Engineering College, Heilongjiang Bayi Agricultural University, Daqing 163319, People's Republic of China
| | - Liang Tong
- Communication and Electronic Engineering Institute, Qiqihar University, Qiqihar 161006, People's Republic of China
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12
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Liedtke I, Diehn S, Heiner Z, Seifert S, Obenaus S, Büttner C, Kneipp J. Multivariate Raman mapping for phenotypic characterization in plant tissue sections. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 251:119418. [PMID: 33461131 DOI: 10.1016/j.saa.2020.119418] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Revised: 12/23/2020] [Accepted: 12/30/2020] [Indexed: 06/12/2023]
Abstract
Identifying and characterizing the biochemical variation in plant tissues is an important task in many research fields. Small spectral differences of the plant cell wall that are caused by genetic or environmental influences may be superimposed by individual variation as well as by a microscopic heterogeneity in molecular composition and structure of different histological substructures. A set of 56 samples from Cucumis sativus (cucumber) plants, comprising a total of ~168,000 spectra from tissue sections of leaf, stem, and roots was investigated by Raman microspectroscopic mapping excited at 532 nm. A multivariate analysis was carried out in order to assess the variation of the spectra with respect to origin of the tissue, the histological (cell wall) substructures, and the possibility to discriminate the spectra obtained from different individuals that had been subjected to two different conditions during growth. Combining the results of principal component analysis (PCA) based classification with the original spatial information in the maps of 23 sections of leaf xylem, variation in cell wall composition is found for four different individuals that also includes a discrimination of tissue grown in the presence and absence of additional silicic acid in the irrigation water of the plants. The spectral data point to differences in a contribution by carotenoids, as well as by hydroxycinnamic acids to the spectra. The results give new insight into the chemical heterogeneity of plant tissues and may be useful for elucidating biochemical processes associated with biomineralization by vibrational spectroscopy.
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Affiliation(s)
- Ingrid Liedtke
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany
| | - Sabrina Diehn
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany
| | - Zsuzsanna Heiner
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany; School of Analytical Sciences Adlershof SALSA, Humboldt-Universität zu Berlin, Albert-Einstein-Straße 5-11, 12489 Berlin, Germany
| | - Stephan Seifert
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany
| | - Sabine Obenaus
- Humboldt Universität zu Berlin, Institut für Gartenbauwissenschaften, Fachgebiet Phytomedizin, Lentzeallee 55/57, 14195 Berlin, Germany
| | - Carmen Büttner
- Humboldt Universität zu Berlin, Institut für Gartenbauwissenschaften, Fachgebiet Phytomedizin, Lentzeallee 55/57, 14195 Berlin, Germany
| | - Janina Kneipp
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany.
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Saletnik A, Saletnik B, Puchalski C. Overview of Popular Techniques of Raman Spectroscopy and Their Potential in the Study of Plant Tissues. Molecules 2021; 26:1537. [PMID: 33799702 PMCID: PMC7999012 DOI: 10.3390/molecules26061537] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 03/05/2021] [Accepted: 03/09/2021] [Indexed: 01/15/2023] Open
Abstract
Raman spectroscopy is one of the main analytical techniques used in optical metrology. It is a vibration, marker-free technique that provides insight into the structure and composition of tissues and cells at the molecular level. Raman spectroscopy is an outstanding material identification technique. It provides spatial information of vibrations from complex biological samples which renders it a very accurate tool for the analysis of highly complex plant tissues. Raman spectra can be used as a fingerprint tool for a very wide range of compounds. Raman spectroscopy enables all the polymers that build the cell walls of plants to be tracked simultaneously; it facilitates the analysis of both the molecular composition and the molecular structure of cell walls. Due to its high sensitivity to even minute structural changes, this method is used for comparative tests. The introduction of new and improved Raman techniques by scientists as well as the constant technological development of the apparatus has resulted in an increased importance of Raman spectroscopy in the discovery and defining of tissues and the processes taking place in them.
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Affiliation(s)
| | - Bogdan Saletnik
- Department of Bioenergetics, Food Analysis and Microbiology, Institute of Food Technology and Nutrition, College of Natural Sciences, University of Rzeszów, Ćwiklińskiej 2D, 35-601 Rzeszów, Poland; (A.S.); (C.P.)
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Barthel D, Schuler H, Galli J, Borruso L, Geier J, Heer K, Burckhardt D, Janik K. Identification of Plant DNA in Adults of the Phytoplasma Vector Cacopsylla picta Helps Understanding Its Feeding Behavior. INSECTS 2020; 11:insects11120835. [PMID: 33255992 PMCID: PMC7761314 DOI: 10.3390/insects11120835] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Revised: 11/22/2020] [Accepted: 11/24/2020] [Indexed: 01/04/2023]
Abstract
Simple Summary Cacopsylla picta is an insect vector of apple proliferation phytoplasma, the causative bacterial agent of apple proliferation disease. In this study, we provide an answer to the open question of whether adult Cacopsylla picta feed from other plants than their known host, the apple plant. We collected Cacopsylla picta specimens from apple trees and analyzed the composition of plant DNA ingested by these insects. By applying a state-of-the art sequencing approach, we show, for the first time, that Cacopsylla picta feeds from a wide range of woody and herbaceous plant species. Our results are important for a better understanding of the biology and feeding behavior of Cacopsylla picta. Since this insect is an efficient vector of apple proliferation phytoplasma, our results are also important to define potential reservoir plants that might be involved in the transmissive cycle of this pathogen. This study thus provides important data of practical relevance. Abstract Apple proliferation is an economically important disease and a threat for commercial apple cultivation. The causative pathogen, the bacterium ‘Candidatus Phytoplasma mali’, is mainly transmitted by Cacopsylla picta, a phloem-feeding insect that develops on the apple tree (Malus spp.). To investigate the feeding behavior of adults of the phytoplasma vector Cacopsylla picta in more detail, we used deep sequencing technology to identify plant-specific DNA ingested by the insect. Adult psyllids were collected in different apple orchards in the Trentino-South Tyrol region of northern Italy. DNA from the whole body of the insect was extracted and analyzed for the presence of plant DNA by performing PCR with two plant-specific primers that target the chloroplast regions trnH-psbA and rbcLa. DNA from 23 plant genera (trnH) and four plant families (rbcLa) of woody and herbaceous plant taxa was detected. Up to six and three plant genera and families, respectively, could be determined in single specimens. The results of this study contribute to a better understanding of the feeding behavior of adult Cacopsylla picta.
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Affiliation(s)
- Dana Barthel
- Laimburg Research Centre, Laimburg 6, Pfatten (Vadena), IT-39040 Auer (Ora), Italy
- Correspondence: (D.B.); (K.J.)
| | - Hannes Schuler
- Faculty of Science and Technology, Free University of Bozen-Bolzano, IT-39100 Bozen (Bolzano), Italy; (H.S.); (L.B.)
- Competence Centre Plant Health, Free University of Bozen-Bolzano, IT-39100 Bozen (Bolzano), Italy
| | - Jonas Galli
- Department of Forest and Soil Sciences, BOKU, University of Natural Resources and Life Sciences Vienna, A-1190 Vienna, Austria;
| | - Luigimaria Borruso
- Faculty of Science and Technology, Free University of Bozen-Bolzano, IT-39100 Bozen (Bolzano), Italy; (H.S.); (L.B.)
| | - Jacob Geier
- Department of Botany, Leopold-Franzens-Universität Innsbruck, Sternwartestraße 15, A-6020 Innsbruck, Austria;
| | - Katrin Heer
- Faculty of Biology—Conservation Biology, Philipps Universität Marburg, Karl-von-Frisch-Straße 8, D-35043 Marburg, Germany;
| | - Daniel Burckhardt
- Naturhistorisches Museum, Augustinergasse 2, CH-4001 Basel, Switzerland;
| | - Katrin Janik
- Laimburg Research Centre, Laimburg 6, Pfatten (Vadena), IT-39040 Auer (Ora), Italy
- Correspondence: (D.B.); (K.J.)
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Li X, Sha J, Xia Y, Sheng K, Liu Y, He Y. Quantitative visualization of subcellular lignocellulose revealing the mechanism of alkali pretreatment to promote methane production of rice straw. BIOTECHNOLOGY FOR BIOFUELS 2020; 13:8. [PMID: 31988660 PMCID: PMC6966900 DOI: 10.1186/s13068-020-1648-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2019] [Accepted: 01/02/2020] [Indexed: 05/07/2023]
Abstract
BACKGROUND As a renewable carbon source, biomass energy not only helps in resolving the management problems of lignocellulosic wastes, but also helps to alleviate the global climate change by controlling environmental pollution raised by their generation on a large scale. However, the bottleneck problem of extensive production of biofuels lies in the filamentous crystal structure of cellulose and the embedded connection with lignin in biomass that leads to poor accessibility, weak degradation and digestion by microorganisms. Some pretreatment methods have shown significant improvement of methane yield and production rate, but the promotion mechanism has not been thoroughly studied. Revealing the temporal and spatial effects of pretreatment on lignocellulose will greatly help deepen our understanding of the optimization mechanism of pretreatment, and promote efficient utilization of lignocellulosic biomass. Here, we propose an approach for qualitative, quantitative, and location analysis of subcellular lignocellulosic changes induced by alkali treatment based on label-free Raman microspectroscopy combined with chemometrics. RESULTS Firstly, the variations of rice straw induced by alkali treatment were characterized by the Raman spectra, and the Raman fingerprint characteristics for classification of rice straw were captured. Then, a label-free Raman chemical imaging strategy was executed to obtain subcellular distribution of the lignocellulose, in the strategy a serious interference of plant tissues' fluorescence background was effectively removed. Finally, the effects of alkali pretreatment on the subcellular spatial distribution of lignocellulose in different types of cells were discovered. CONCLUSIONS The results demonstrated the mechanism of alkali treatment that promotes methane production in rice straw through anaerobic digestion by means of a systemic study of the evidence from the macroscopic measurement and Raman microscopic quantitative and localization two-angle views. Raman chemical imaging combined with chemometrics could nondestructively realize qualitative, quantitative, and location analysis of the lignocellulose of rice straw at a subcellular level in a label-free way, which was beneficial to optimize pretreatment for the improvement of biomass conversion efficiency and promote extensive utilization of biofuel.
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Affiliation(s)
- Xiaoli Li
- College of Biosystems Engineering and Food Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058 China
- Key Laboratory of Spectroscopy Sensing, Ministry of Agriculture and Rural Areas, 866 Yuhangtang Road, Hangzhou, 310058 China
- State Key Laboratory of Modern Optical Instrumentation, College of Optical Science and Engineering, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058 China
| | - Junjing Sha
- College of Biosystems Engineering and Food Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058 China
- Key Laboratory of Spectroscopy Sensing, Ministry of Agriculture and Rural Areas, 866 Yuhangtang Road, Hangzhou, 310058 China
- State Key Laboratory of Modern Optical Instrumentation, College of Optical Science and Engineering, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058 China
| | - Yihua Xia
- College of Biosystems Engineering and Food Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058 China
- Key Laboratory of Spectroscopy Sensing, Ministry of Agriculture and Rural Areas, 866 Yuhangtang Road, Hangzhou, 310058 China
- State Key Laboratory of Modern Optical Instrumentation, College of Optical Science and Engineering, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058 China
| | - Kuichuan Sheng
- College of Biosystems Engineering and Food Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058 China
- Key Laboratory of Spectroscopy Sensing, Ministry of Agriculture and Rural Areas, 866 Yuhangtang Road, Hangzhou, 310058 China
- State Key Laboratory of Modern Optical Instrumentation, College of Optical Science and Engineering, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058 China
| | - Yufei Liu
- College of Biosystems Engineering and Food Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058 China
- Key Laboratory of Spectroscopy Sensing, Ministry of Agriculture and Rural Areas, 866 Yuhangtang Road, Hangzhou, 310058 China
- State Key Laboratory of Modern Optical Instrumentation, College of Optical Science and Engineering, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058 China
| | - Yong He
- College of Biosystems Engineering and Food Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058 China
- Key Laboratory of Spectroscopy Sensing, Ministry of Agriculture and Rural Areas, 866 Yuhangtang Road, Hangzhou, 310058 China
- State Key Laboratory of Modern Optical Instrumentation, College of Optical Science and Engineering, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058 China
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Abstract
Raman imaging is a microspectroscopic approach revealing the chemistry and structure of plant cell walls in situ on the micro- and nanoscale. The method is based on the Raman effect (inelastic scattering) that takes place when monochromatic laser light interacts with matter. The scattered light conveys a change in energy that is inherent of the involved molecule vibrations. The Raman spectra are thus characteristic for the chemical structure of the molecules and can be recorded spatially ordered with a lateral resolution of about 300 nm. Based on thousands of acquired Raman spectra, images can be assessed using univariate as well as multivariate data analysis approaches. One advantage compared to staining or labeling techniques is that not only one image is obtained as a result but different components and characteristics can be displayed in several images. Furthermore, as every pixel corresponds to a Raman spectrum, which is a kind of "molecular fingerprint," the imaging results should always be evaluated and further details revealed by analysis (e.g., band assignment) of extracted spectra. In this chapter, the basic theoretical background of the technique and instrumentation are described together with sample preparation requirements and tips for high-quality plant tissue sections and successful Raman measurements. Typical Raman spectra of the different plant cell wall components are shown as well as an exemplified analysis of Raman data acquired on the model plant Arabidopsis. Important preprocessing methods of the spectra are included as well as single component image generation (univariate) and spectral unmixing by means of multivariate approaches (e.g., vertex component analysis).
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Affiliation(s)
- Batirtze Prats Mateu
- Department of Nanobiotechnology, Institute of Biophysics, BOKU-University of Natural Resources and Life Sciences, Vienna, Austria
| | - Peter Bock
- Department of Nanobiotechnology, Institute of Biophysics, BOKU-University of Natural Resources and Life Sciences, Vienna, Austria
| | - Notburga Gierlinger
- Department of Nanobiotechnology, Institute of Biophysics, BOKU-University of Natural Resources and Life Sciences, Vienna, Austria.
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Guo F, Altaner CM. Measuring Molecular Strain in Rewetted and Never-Dried Eucalypt Wood with Raman Spectroscopy. Biomacromolecules 2019; 20:3191-3199. [PMID: 31313909 DOI: 10.1021/acs.biomac.9b00808] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
To measure growth strain in wood using Raman spectroscopy, we investigated the Raman spectra of rewetted (water-saturated) Eucalyptus regnans and green Eucalyptus quadrangulata wood during tensile tests. Partial least squares models to predict the tensile strain were built from the Raman spectra. The best model could predict the tensile strain with a root mean square error of 427.5 με. Apart from the widely reported band shift at 1095 cm-1 upon mechanical strain, spectral changes at 1420, 1120, 895, and 456 cm-1 were identified. The assignments of these bands were discussed in relation to the molecular deformation of cellulose. The band shift rates during tensile tests were -3.06 and -2.15 cm-1/% for rewetted E. regnans and green E. quadrangulata wood, respectively. We successfully detected the release of the molecular growth strain in green eucalyptus wood with Raman spectroscopy by observing band shifts of the 1095 cm-1 signal. Further, there was a moderate correlation (r = 0.48) between the growth strain measured with strain gauges and the 1095 cm-1 band position. The precision of the prediction of growth strain using Raman spectroscopy was negatively affected by variation attributed to the inhomogeneity of wood on the millimeter scale and instrumental instability.
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Affiliation(s)
- Fei Guo
- College of Material Engineering , Fujian Agriculture and Forestry University , 350108 Fuzhou , China.,New Zealand School of Forestry , University of Canterbury , Private Bag 4800 , 8140 Christchurch , New Zealand
| | - Clemens M Altaner
- New Zealand School of Forestry , University of Canterbury , Private Bag 4800 , 8140 Christchurch , New Zealand
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Jin K, Liu X, Wang K, Jiang Z, Tian G, Yang S, Shang L, Ma J. Imaging the dynamic deposition of cell wall polymer in xylem and phloem in Populus × euramericana. PLANTA 2018; 248:849-858. [PMID: 29938358 DOI: 10.1007/s00425-018-2931-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2018] [Accepted: 05/29/2018] [Indexed: 05/13/2023]
Abstract
Both G units and S units deposited in the whole lignification process of xylem fiber. The topochemical variations in newly formed xylem and phloem of Populus × euramericana were investigated by combined microscopic techniques. During xylem formation, earlier cell wall deposition in vessel and afterwards in the neighboring fiber was observed in situ. Raman images in xylem fiber emphasized that cell wall deposition was an ordered process which lignification started in cell corner following carbohydrates deposition. Higher deposition speed of carbohydrates was revealed at the beginning of the cell wall differentiation, and the syringyl (S) units deposition was more pronounced compared with guaiacyl (G) units at the earlier stage of lignification. The comparative analysis of cell wall composition in phloem fiber indicated that phloem formed earlier than xylem and the distribution of lignin monomers varied significantly with phloem fiber location. Furthermore, an interesting phenomenon was found that the outermost phloem fiber near the periderm displayed a multilayered structure with alternating broad and narrow layer, and the broad lamellae showed higher concentration of carbohydrates and S lignin. The cytological information including cell wall composition and lignin structure of xylem and phloem might be helpful to understand the wood growth progresses and facilitate utilization of woody plants.
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Affiliation(s)
- Kexia Jin
- Key Lab of Bamboo and Rattan Science & Technology, International Center for Bamboo and Rattan, Beijing, 100102, China
| | - Xinge Liu
- Key Lab of Bamboo and Rattan Science & Technology, International Center for Bamboo and Rattan, Beijing, 100102, China
| | - Kun Wang
- Key Lab of Bamboo and Rattan Science & Technology, International Center for Bamboo and Rattan, Beijing, 100102, China
| | - Zehui Jiang
- Key Lab of Bamboo and Rattan Science & Technology, International Center for Bamboo and Rattan, Beijing, 100102, China
| | - Genlin Tian
- Key Lab of Bamboo and Rattan Science & Technology, International Center for Bamboo and Rattan, Beijing, 100102, China
| | - Shumin Yang
- Key Lab of Bamboo and Rattan Science & Technology, International Center for Bamboo and Rattan, Beijing, 100102, China
| | - Lili Shang
- Key Lab of Bamboo and Rattan Science & Technology, International Center for Bamboo and Rattan, Beijing, 100102, China
| | - Jianfeng Ma
- Key Lab of Bamboo and Rattan Science & Technology, International Center for Bamboo and Rattan, Beijing, 100102, China.
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Zhu N, Wu D, Chen K. Label-free visualization of fruit lignification: Raman molecular imaging of loquat lignified cells. PLANT METHODS 2018; 14:58. [PMID: 30008794 PMCID: PMC6043974 DOI: 10.1186/s13007-018-0328-1] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Accepted: 07/06/2018] [Indexed: 05/10/2023]
Abstract
BACKGROUND Flesh lignification, leading to increased fruit firmness, has been reported in several kinds of fruit. Understanding the mechanisms underlying fruit lignification is important to optimize the postharvest storage strategies and reduce the quality deterioration of postharvest fruit. Especially cellular level investigation of lignin deposition in fruits provides novel insight for deciphering the mechanisms underlying fruit lignification. The primary objective of this study was to establish a procedure of using Raman microspectroscopy technique to depict fruit lignification at the cell level. RESULTS Lignified cells, a special kind of cells contained high lignin content, were found abundantly scattered in red-fleshed 'Luoyangqing' loquat. Whereas these special lignified cells were barely detected in 'Baisha' loquat flesh. Dominant Raman bands of lignified cells were found primarily attributed to lignin (1664, 1628, 1603, 1467, and 1272 cm-1), cellulose (1383, 1124 and 1098 cm-1) and pectin (852 and 1740 cm-1). The band intensity correlation analysis indicated the peak at 1335 cm-1 assigned to either lignin or cellulose in previous works was related to lignin for the lignified cells. Multi-peaks Gaussian fitting successfully resolved the overlapped fingerprint peaks of lignin in 1550-1700 cm-1 into three independent peaks, which were assigned to different functional groups of lignin. Furthermore, the spatially resolved Raman images of lignified cells were generated, indicating that lignin and cellulose saturated the whole lignified cells, pectin mainly located in the cell corner, and the parenchyma cells contained little lignin. In addition, both phloroglucinol-HCl staining and autofluorescence analysis confirmed the results of lignin distribution of Raman microscopic analysis. CONCLUSIONS A procedure for the simultaneous visualization of the main components of the flesh cells without labeling by high-resolution Raman microspectroscopy has been established. With Raman microscopic imaging technique, we can add a microscopic level to cell compositions, essential for a detailed molecular understanding of loquat lignification. Such method can be further used to chemically monitor the textural changes during the ripening process or postharvest storage of other fruits and vegetables.
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Affiliation(s)
- Nan Zhu
- College of Agriculture and Biotechnology, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology/The State Agriculture Ministry Laboratory of Horticultural Plant Growth/Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou, 310058 People’s Republic of China
| | - Di Wu
- College of Agriculture and Biotechnology, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology/The State Agriculture Ministry Laboratory of Horticultural Plant Growth/Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou, 310058 People’s Republic of China
| | - Kunsong Chen
- College of Agriculture and Biotechnology, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology/The State Agriculture Ministry Laboratory of Horticultural Plant Growth/Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou, 310058 People’s Republic of China
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Barathi M, Kumar ASK, Kodali J, Mittal S, Samhith GD, Rajesh N. Probing the Interaction between Fluoride and the Polysaccharides in Al(III)- and Zr (IV)-Modified Tea Waste by Using Diverse Analytical Characterization Techniques. ChemistrySelect 2017. [DOI: 10.1002/slct.201701774] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Maniraj Barathi
- Department of Chemistry; Birla Institute of Technology and Science; Pilani- Hyderabad Campus, Jawahar Nagar, Shameerpet Mandal, R.R. Dist- 500 078, Telangana India
| | - Alagarsamy Santhana Krishna Kumar
- Department of Chemistry; Birla Institute of Technology and Science; Pilani- Hyderabad Campus, Jawahar Nagar, Shameerpet Mandal, R.R. Dist- 500 078, Telangana India
- Department of Chemistry; National Sun Yat-sen University; Kaohsiung city 80424 Taiwan
| | - Jagadeesh Kodali
- Department of Chemistry; Birla Institute of Technology and Science; Pilani- Hyderabad Campus, Jawahar Nagar, Shameerpet Mandal, R.R. Dist- 500 078, Telangana India
| | - Shivam Mittal
- Department of Chemistry; Birla Institute of Technology and Science; Pilani- Hyderabad Campus, Jawahar Nagar, Shameerpet Mandal, R.R. Dist- 500 078, Telangana India
| | - Guddati Dhruva Samhith
- Department of Chemistry; Birla Institute of Technology and Science; Pilani- Hyderabad Campus, Jawahar Nagar, Shameerpet Mandal, R.R. Dist- 500 078, Telangana India
| | - Nagarathnam Rajesh
- Department of Chemistry; Birla Institute of Technology and Science; Pilani- Hyderabad Campus, Jawahar Nagar, Shameerpet Mandal, R.R. Dist- 500 078, Telangana India
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21
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Chylińska M, Szymańska-Chargot M, Deryło K, Tchórzewska D, Zdunek A. Changing of biochemical parameters and cell wall polysaccharides distribution during physiological development of tomato fruit. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2017; 119:328-337. [PMID: 28942290 DOI: 10.1016/j.plaphy.2017.09.010] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2017] [Revised: 09/11/2017] [Accepted: 09/12/2017] [Indexed: 05/14/2023]
Abstract
This study was aimed at discovering an impact of biochemical parameters (like content of cell wall polysaccharides, phenolic compounds, ascorbic acid or activity of pectinolytic enzymes) on cell wall microstructure during physiological fruit development. Cell wall microstructure as well as changes in the polysaccharides distribution were examined by confocal Raman microscopy. Also there was a need to simultaneous usage of reference method which is immunolabeling. A tomato fruit (Solanum lycopersicum cv Cerise) has been selected to observe the changes taking place in the fruit cell wall as it recently has been recognized as a model species for exploring fruit development processes such as fruit formation and ripening. Our studies showed that chemical images allows to depict changes in spatial distribution of polysaccharides in plant cell wall (including the middle lamella area), thus this technique allows to observation of cell wall degradation during tomato ripening (mainly pectic polysaccharides degradation). It seems that high level of pectinolytic enzymes activity and increasing content of ascorbate and hence decrease of pectins content have a significant impact on spatial distribution of biopolymers in fruit cell wall.
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Affiliation(s)
- Monika Chylińska
- Institute of Agrophysics, Polish Academy of Sciences, Doswiadczalna 4, 20-290 Lublin, Poland.
| | | | - Kamil Deryło
- Department of Molecular Biology, Maria Curie-Sklodowska University, Akademicka 19, 20-033 Lublin, Poland
| | - Dorota Tchórzewska
- Department of Plant Anatomy and Cytology, Maria Curie-Skłodowska University, Akademicka 19, 20-033 Lublin, Poland
| | - Artur Zdunek
- Institute of Agrophysics, Polish Academy of Sciences, Doswiadczalna 4, 20-290 Lublin, Poland
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Gierlinger N. New insights into plant cell walls by vibrational microspectroscopy. APPLIED SPECTROSCOPY REVIEWS 2017; 53:517-551. [PMID: 30057488 PMCID: PMC6050719 DOI: 10.1080/05704928.2017.1363052] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Vibrational spectroscopy provides non-destructively the molecular fingerprint of plant cells in the native state. In combination with microscopy, the chemical composition can be followed in context with the microstructure, and due to the non-destructive application, in-situ studies of changes during, e.g., degradation or mechanical load are possible. The two complementary vibrational microspectroscopic approaches, Fourier-Transform Infrared (FT-IR) Microspectroscopy and Confocal Raman spectroscopy, are based on different physical principles and the resulting different drawbacks and advantages in plant applications are reviewed. Examples for FT-IR and Raman microscopy applications on plant cell walls, including imaging as well as in-situ studies, are shown to have high potential to get a deeper understanding of structure-function relationships as well as biological processes and technical treatments. Both probe numerous different molecular vibrations of all components at once and thus result in spectra with many overlapping bands, a challenge for assignment and interpretation. With the help of multivariate unmixing methods (e.g., vertex components analysis), the most pure components can be revealed and their distribution mapped, even tiny layers and structures (250 nm). Instrumental as well as data analysis progresses make both microspectroscopic methods more and more promising tools in plant cell wall research.
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Affiliation(s)
- Notburga Gierlinger
- Department of Nanobiotechnology, University of Natural Resources and Life Sciences, Vienna, Austria
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George J, Ammar ED, Hall DG, Lapointe SL. Sclerenchymatous ring as a barrier to phloem feeding by Asian citrus psyllid: Evidence from electrical penetration graph and visualization of stylet pathways. PLoS One 2017; 12:e0173520. [PMID: 28278248 PMCID: PMC5344446 DOI: 10.1371/journal.pone.0173520] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2016] [Accepted: 02/21/2017] [Indexed: 12/30/2022] Open
Abstract
Asian citrus psyllid (Diaphorina citri) feeding behaviors play a significant role in the transmission of the phloem-limited Candidatus Liberibacter asiaticus (CLas) bacterium that causes the economically devastating citrus greening disease. Sustained phloem ingestion by D. citri on CLas infected plants is required for pathogen acquisition and transmission. Recent studies have shown a fibrous ring of thick-walled sclerenchyma around the phloem in mature, fully expanded citrus leaves that is more prominent on the abaxial compared with the adaxial side. The composition and thickness of this fibrous ring may have an important role in selection of feeding sites by D. citri based on leaf age and leaf surface, which in turn can affect pathogen acquisition and transmission. We measured feeding behavior using electrical penetration graph (EPG) recordings of individual D. citri adults placed on abaxial or adaxial surfaces of young or mature Valencia orange leaves to study the role of the sclerenchymatous ring in modifying D. citri feeding behavior. Feeding sites on the same leaf tissues were then sectioned and examined by epifluorescence microscopy. The duration of phloem ingestion (E2 waveform) by psyllids was significantly reduced on mature compared with young leaves, and on abaxial compared with adaxial leaf surfaces. The longest duration of phloem ingestion was observed from psyllids placed on the adaxial side of young leaves that had the least developed sclerenchyma. Bouts of phloem salivation (E1 waveform), however, were significantly longer on mature leaves compared with young leaves. D. citri adults made consecutive phloem feeding attempts (bouts) on the abaxial side of mature leaves and those bouts resulted in unsuccessful or shorter periods of phloem ingestion. Adults also made more frequent and longer bouts of xylem ingestion on mature leaves compared with adult psyllids placed on young leaves. Epifluorescence microscopy showed that the fibrous ring in young leaves was thinner and autofluoresced in red whereas the ring in mature leaves was thicker and autofluoresced in blue, indicating changes in structure and composition (e.g., lignification) of sclerenchyma correlated with leaf age. Our results support the hypothesis that the presence of a thick, well-developed fibrous ring around phloem tissues of mature leaves acts as a barrier to frequent or prolonged phloem ingestion by D. citri from citrus leaves. This may have an important role in limiting or preventing CLas acquisition and/or transmission by D. citri, and could be used for identification and development of resistant citrus cultivars.
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Affiliation(s)
- Justin George
- USDA-ARS, Subtropical Insects and Horticultural Research Unit, United States Horticultural Research Laboratory, Fort Pierce, Florida, United States of America
| | - El-Desouky Ammar
- USDA-ARS, Subtropical Insects and Horticultural Research Unit, United States Horticultural Research Laboratory, Fort Pierce, Florida, United States of America
- University of Florida, IFAS, Lake Alfred, Florida, United States of America
| | - David G. Hall
- USDA-ARS, Subtropical Insects and Horticultural Research Unit, United States Horticultural Research Laboratory, Fort Pierce, Florida, United States of America
| | - Stephen L. Lapointe
- USDA-ARS, Subtropical Insects and Horticultural Research Unit, United States Horticultural Research Laboratory, Fort Pierce, Florida, United States of America
- * E-mail:
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Szymańska-Chargot M, Chylińska M, Pieczywek PM, Rösch P, Schmitt M, Popp J, Zdunek A. Raman imaging of changes in the polysaccharides distribution in the cell wall during apple fruit development and senescence. PLANTA 2016; 243:935-45. [PMID: 26733465 PMCID: PMC4819746 DOI: 10.1007/s00425-015-2456-4] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2015] [Accepted: 12/18/2015] [Indexed: 05/18/2023]
Abstract
Du ring on-tree ripening, the pectin distribution changed from polydispersed in cell wall to cumulated in cell wall corners. During apple storage, the pectin distribution returned to evenly dispersed along the cell wall. The plant cell wall influences the texture properties of fruit tissue for example apples become softer during ripening and postharvest storage. This softening process is believed to be mainly connected with changes in the cell wall composition due to polysaccharides undergoing an enzymatic degradation. These changes in polysaccharides are currently mainly investigated via chemical analysis or monoclonal labeling. Here, we propose the application of Raman microscopy for evaluating the changes in the polysaccharide distribution in the cell wall of apples during both ripening and postharvest storage. The apples were harvested 1 month and 2 weeks before optimal harvest date as well as at the optimal harvest date. The apples harvested at optimal harvest date were stored for 3 months. The Raman maps, as well as the chemical analysis were obtained for each harvest date and after 1, 2 and 3 months of storage, respectively. The analysis of the Raman maps showed that the pectins in the middle lamella and primary cell wall undergo a degradation. The changes in cellulose and hemicellulose were less pronounced. These findings were confirmed by the chemical analysis results. During development changes of pectins from a polydispersed form in the cell walls to a cumulated form in cell wall corners could be observed. In contrast after 3 months of apple storage we could observe an substantial pectin decrease. The obtained results demonstrate that Raman chemical imaging might be a very useful tool for a first identification of compositional changes in plant tissue during their development. The great advantage Raman microspectroscopy offers is the simultaneous localization and identification of polysaccharides within the cell wall and plant tissue.
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Affiliation(s)
- Monika Szymańska-Chargot
- Institute of Agrophysics, Polish Academy of Sciences, ul. Doswiadczalna 4, 20-290, Lublin 27, Poland.
| | - Monika Chylińska
- Institute of Agrophysics, Polish Academy of Sciences, ul. Doswiadczalna 4, 20-290, Lublin 27, Poland
| | - Piotr M Pieczywek
- Institute of Agrophysics, Polish Academy of Sciences, ul. Doswiadczalna 4, 20-290, Lublin 27, Poland
| | - Petra Rösch
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, 07743, Jena, Germany
| | - Michael Schmitt
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, 07743, Jena, Germany
| | - Jürgen Popp
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, 07743, Jena, Germany
- Leibniz Institute of Photonic Technology (IPHT), 07745, Jena, Germany
| | - Artur Zdunek
- Institute of Agrophysics, Polish Academy of Sciences, ul. Doswiadczalna 4, 20-290, Lublin 27, Poland
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25
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SERS hyperspectral imaging assisted by MCR-ALS for studying polymeric microfilms loaded with paracetamol. Microchem J 2015. [DOI: 10.1016/j.microc.2015.07.003] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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Ma J, Lv X, Yang S, Tian G, Liu X. Structural Insight into Cell Wall Architecture of Micanthus sinensis cv. using Correlative Microscopy Approaches. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2015; 21:1304-1313. [PMID: 26358178 DOI: 10.1017/s1431927615014932] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Structural organization of the plant cell wall is a key parameter for understanding anisotropic plant growth and mechanical behavior. Four imaging platforms were used to investigate the cell wall architecture of Miscanthus sinensis cv. internode tissue. Using transmission electron microscopy with potassium permanganate, we found a great degree of inhomogeneity in the layering structure (4-9 layers) of the sclerenchymatic fiber (Sf). However, the xylem vessel showed a single layer. Atomic force microscopy images revealed that the cellulose microfibrils (Mfs) deposited in the primary wall of the protoxylem vessel (Pxv) were disordered, while the secondary wall was composed of Mfs oriented in parallel in the cross and longitudinal section. Furthermore, Raman spectroscopy images indicated no variation in the Mf orientation of Pxv and the Mfs in Pxv were oriented more perpendicular to the cell axis than that of Sfs. Based on the integrated results, we have proposed an architectural model of Pxv composed of two layers: an outermost primary wall composed of a meshwork of Mfs and inner secondary wall containing parallel Mfs. This proposed model will support future ultrastructural analysis of plant cell walls in heterogeneous tissues, an area of increasing scientific interest particularly for liquid biofuel processing.
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Affiliation(s)
- Jianfeng Ma
- 1International Center for Bamboo and Rattan,Beijing 100102,China
| | - Xunli Lv
- 2Shiyan Middle School,Shaanxi province,Xianyang 712000,China
| | - Shumin Yang
- 1International Center for Bamboo and Rattan,Beijing 100102,China
| | - Genlin Tian
- 1International Center for Bamboo and Rattan,Beijing 100102,China
| | - Xing'e Liu
- 1International Center for Bamboo and Rattan,Beijing 100102,China
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Vibrational spectroscopic image analysis of biological material using multivariate curve resolution–alternating least squares (MCR-ALS). Nat Protoc 2015; 10:217-40. [DOI: 10.1038/nprot.2015.008] [Citation(s) in RCA: 206] [Impact Index Per Article: 22.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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Fariñas M, Álvarez-Arenas T. Ultrasonic assessment of the elastic functional design of component tissues of Phormium tenax leaves. J Mech Behav Biomed Mater 2014; 39:304-15. [DOI: 10.1016/j.jmbbm.2014.07.018] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2014] [Revised: 07/06/2014] [Accepted: 07/17/2014] [Indexed: 11/30/2022]
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Ammar ED, Richardson ML, Abdo Z, Hall DG, Shatters RG. Differences in stylet sheath occurrence and the fibrous ring (sclerenchyma) between xCitroncirus plants relatively resistant or susceptible to adults of the Asian citrus psyllid Diaphorina citri (Hemiptera: Liviidae). PLoS One 2014; 9:e110919. [PMID: 25343712 PMCID: PMC4208817 DOI: 10.1371/journal.pone.0110919] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2014] [Accepted: 09/26/2014] [Indexed: 11/19/2022] Open
Abstract
The Asian citrus psyllid (ACP, Diaphorina citri, Hemiptera: Liviidae), is the principal vector of the phloem-limited bacteria strongly associated with huanglongbing (HLB), the world's most serious disease of citrus. Host plant resistance may provide an environmentally safe and sustainable method of controlling ACP and/or HLB. Two xCitroncirus accessions (hybrids of Poncirus trifoliata and Citrus spp.), that are relatively resistant (UN-3881) or relatively susceptible (Troyer-1459) to ACP adults with regard to adult longevity, were compared in relation to ACP feeding behavior and some structural features of the leaf midrib. The settling (putative feeding/probing) sites of ACP adults on various parts of the leaf were not influenced primarily by plant accession. However, fewer ACP stylet sheaths were found in the midrib and fewer stylet sheath termini reached the vascular bundle (phloem and/or xylem) in UN-3881 compared to Troyer-1459 plants. Furthermore, in midribs of UN-3881 leaves the fibrous ring (sclerenchyma) around the phloem was significantly wider (thicker) compared to that in midribs of Troyer-1459 leaves. Our data indicate that feeding and/or probing by ACP adults into the vascular bundle is less frequent in the more resistant (UN-3881) than in the more susceptible (Troyer-1459) accessions. Our results also suggest that the thickness of the fibrous ring may be a barrier to stylet penetration into the vascular bundle, which is important for successful ACP feeding on the phloem and for transmitting HLB-associated bacteria. These results may help in the development of citrus plants resistant to ACP, which in turn could halt or slow the spread of the HLB-associated bacteria by this vector.
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Affiliation(s)
- El-Desouky Ammar
- United States Department of Agriculture-Agricultural Research Service, Horticultural Research Laboratory, Fort Pierce, Florida, United States of America
- * E-mail:
| | - Matthew L. Richardson
- United States Department of Agriculture-Agricultural Research Service, Horticultural Research Laboratory, Fort Pierce, Florida, United States of America
| | - Zaid Abdo
- United States Department of Agriculture-Agricultural Research Service, South Atlantic Area, Athens, Georgia, United States of America
| | - David G. Hall
- United States Department of Agriculture-Agricultural Research Service, Horticultural Research Laboratory, Fort Pierce, Florida, United States of America
| | - Robert G. Shatters
- United States Department of Agriculture-Agricultural Research Service, Horticultural Research Laboratory, Fort Pierce, Florida, United States of America
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30
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Xia Y, Petti C, Williams MA, DeBolt S. Experimental approaches to study plant cell walls during plant-microbe interactions. FRONTIERS IN PLANT SCIENCE 2014; 5:540. [PMID: 25352855 PMCID: PMC4196508 DOI: 10.3389/fpls.2014.00540] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2014] [Accepted: 09/23/2014] [Indexed: 05/27/2023]
Abstract
Plant cell walls provide physical strength, regulate the passage of bio-molecules, and act as the first barrier of defense against biotic and abiotic stress. In addition to providing structural integrity, plant cell walls serve an important function in connecting cells to their extracellular environment by sensing and transducing signals to activate cellular responses, such as those that occur during pathogen infection. This mini review will summarize current experimental approaches used to study cell wall functions during plant-pathogen interactions. Focus will be paid to cell imaging, spectroscopic analyses, and metabolic profiling techniques.
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Affiliation(s)
| | | | | | - Seth DeBolt
- Department of Horticulture, University of KentuckyLexington, KY, USA
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31
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Chylińska M, Szymańska-Chargot M, Zdunek A. Imaging of polysaccharides in the tomato cell wall with Raman microspectroscopy. PLANT METHODS 2014; 10:14. [PMID: 24917885 PMCID: PMC4051370 DOI: 10.1186/1746-4811-10-14] [Citation(s) in RCA: 65] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2014] [Accepted: 05/22/2014] [Indexed: 05/18/2023]
Abstract
BACKGROUND The primary cell wall of fruits and vegetables is a structure mainly composed of polysaccharides (pectins, hemicelluloses, cellulose). Polysaccharides are assembled into a network and linked together. It is thought that the percentage of components and of plant cell wall has an important influence on mechanical properties of fruits and vegetables. RESULTS In this study the Raman microspectroscopy technique was introduced to the visualization of the distribution of polysaccharides in cell wall of fruit. The methodology of the sample preparation, the measurement using Raman microscope and multivariate image analysis are discussed. Single band imaging (for preliminary analysis) and multivariate image analysis methods (principal component analysis and multivariate curve resolution) were used for the identification and localization of the components in the primary cell wall. CONCLUSIONS Raman microspectroscopy supported by multivariate image analysis methods is useful in distinguishing cellulose and pectins in the cell wall in tomatoes. It presents how the localization of biopolymers was possible with minimally prepared samples.
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Affiliation(s)
- Monika Chylińska
- Institute of Agrophysics, Polish Academy of Sciences, Doswiadczalna 4, 20-290 Lublin, Poland
| | | | - Artur Zdunek
- Institute of Agrophysics, Polish Academy of Sciences, Doswiadczalna 4, 20-290 Lublin, Poland
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32
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Gierlinger N. Revealing changes in molecular composition of plant cell walls on the micron-level by Raman mapping and vertex component analysis (VCA). FRONTIERS IN PLANT SCIENCE 2014; 5:306. [PMID: 25071792 PMCID: PMC4074855 DOI: 10.3389/fpls.2014.00306] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2014] [Accepted: 06/09/2014] [Indexed: 05/18/2023]
Abstract
At the molecular level the plant cell walls consist of a few nanometer thick semi-crystalline cellulose fibrils embedded in amorphous matrix polymers such as pectins, hemicelluloses, and lignins. The arrangement of these molecules within the cell wall in different plant tissues, cells and cell wall layers is of crucial importance for a better understanding and thus optimized utilization of plant biomass. During the last years Confocal Raman microscopy evolved as a powerful method in plant science by revealing the different molecules in context with the microstructure. In this study two-dimensional spectral maps have been acquired of micro-cross-sections of spruce (softwood) and beech (hardwood). Raman images have been derived by using univariate (band integration, height ratios) and multivariate methods [vertex component analysis (VCA)]. While univariate analysis only visualizes changes in selected band heights or areas, VCA separates anatomical regions and cell wall layers with the most different molecular structures. Beside visualization of the distinguished regions and features the underlying molecular structure can be derived based on the endmember spectra. VCA revealed that the lumen sided S3 layer has a similar molecular composition as the pit membrane, both revealing a clear change in lignin composition compared to all other cell wall regions. Within the S2 layer a lamellar structure was visualized, which was elucidated to derive from slight changes in lignin composition and content and might be due to successive but not uniform lignification during growth.
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Affiliation(s)
- Notburga Gierlinger
- Department of Materials Science and Process Engineering, BOKU-University of Natural Resources and Life ScienceVienna, Austria
- Institute for Building Materials, Eidgenössische Technische Hochschule ZurichZurich, Switzerland
- Applied Wood Research Laboratory, Empa – Swiss Federal Laboratories for Material Testing and ResearchDuebendorf, Switzerland
- *Correspondence: Notburga Gierlinger, Department of Materials Science and Process Engineering, BOKU-University of Natural Resources and Life Science, Peter-Jordan Street 82, A-1190 Vienna, Austria e-mail:
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33
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Thygesen LG, Gierlinger N. The molecular structure within dislocations in Cannabis sativa fibres studied by polarised Raman microspectroscopy. J Struct Biol 2013; 182:219-25. [PMID: 23542583 DOI: 10.1016/j.jsb.2013.03.010] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2012] [Revised: 03/15/2013] [Accepted: 03/19/2013] [Indexed: 10/27/2022]
Abstract
Polarised Raman micrsospectroscopy was employed to study the molecular structure within dislocations (slip planes) in the cell walls of Hemp fibre cells (Cannabis sativa (L.)). It was found that the cellulose microfibrils within dislocations have a different orientation than in the surrounding cell wall, and that the cellulose in the transition zones between a large dislocation and the surrounding wall may have yet another orientation. Furthermore, cellulose orientation seemed to be less uniform within dislocations than in the surrounding cell wall.
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Affiliation(s)
- Lisbeth G Thygesen
- Faculty of Science, University of Copenhagen, Rolighedsvej 23, DK-1958 Frederiksberg C, Denmark.
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Stylet morphometrics and citrus leaf vein structure in relation to feeding behavior of the Asian citrus psyllid Diaphorina citri, vector of citrus huanglongbing bacterium. PLoS One 2013; 8:e59914. [PMID: 23555830 PMCID: PMC3608565 DOI: 10.1371/journal.pone.0059914] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2013] [Accepted: 02/23/2013] [Indexed: 12/30/2022] Open
Abstract
The Asian citrus psyllid (ACP), Diaphorina citri (Hemiptera: Psyllidae), is the primary vector of the phloem-limited bacterium Candidatus Liberibacter asiaticus (LAS) associated with huanglongbing (HLB, citrus greening), considered the world's most serious disease of citrus. Stylet morphometrics of ACP nymphs and adults were studied in relation to citrus vein structure and to their putative (histologically verified) feeding sites on Valencia orange leaves. ACP nymphs preferred to settle and feed on the lower (abaxial) side of young leaves either on secondary veins or on the sides of the midrib, whereas adults preferred to settle and feed on the upper (adaxial) or lower secondary veins of young or old leaves. Early instar nymphs can reach and probe the phloem probably because the distance to the phloem is considerably shorter in younger than in mature leaves, and is shorter from the sides of the midrib compared to that from the center. Additionally, the thick-walled 'fibrous ring' (sclerenchyma) around the phloem, which may act as a barrier to ACP stylet penetration into the phloem, is more prominent in older than in younger leaves and in the center than on the sides of the midrib. The majority (80-90%) of the salivary sheath termini produced by ACP nymphs and adults that reached a vascular bundle were associated with the phloem, whereas only 10-20% were associated with xylem vessels. Ultrastructural studies on ACP stylets and LAS-infected leaves suggested that the width of the maxillary food canal in first instar nymphs is wide enough for LAS bacteria to traverse during food ingestion (and LAS acquisition). However, the width of the maxillary salivary canal in these nymphs may not be wide enough to accommodate LAS bacteria during salivation (and LAS inoculation) into host plants. This may explain the inability of early instar nymphs to transmit LAS/HLB in earlier reports.
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Gierlinger N, Keplinger T, Harrington M. Imaging of plant cell walls by confocal Raman microscopy. Nat Protoc 2012; 7:1694-708. [PMID: 22918387 DOI: 10.1038/nprot.2012.092] [Citation(s) in RCA: 163] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Raman imaging of plant cell walls represents a nondestructive technique that can provide insights into chemical composition in context with structure at the micrometer level (<0.5 μm). The major steps of the experimental procedure are described: sample preparation (embedding and microcutting), setting the mapping parameters, and finally the calculation of chemical images on the basis of the acquired Raman spectra. Every Raman image is based on thousands of spectra, each being a spatially resolved molecular 'fingerprint' of the cell wall. Multiple components are analyzed within the native cell walls, and insights into polymer composition as well as the orientation of the cellulose microfibrils can be gained. The most labor-intensive step of this process is often the sample preparation, as the imaging approach requires a flat surface of the plant tissue with intact cell walls. After finishing the map (acquisition time is ∼10 min to 10 h, depending on the size of the region of interest and scanning parameters), many possibilities exist for the analysis of spectral data and image generation.
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Affiliation(s)
- Notburga Gierlinger
- Department of Material Sciences and Process Engineering, Institute of Wood Science and Technology, University of Natural Resources and Life Sciences (BOKU), Vienna, Austria.
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36
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Drescher D, Kneipp J. Nanomaterials in complex biological systems: insights from Raman spectroscopy. Chem Soc Rev 2012; 41:5780-99. [DOI: 10.1039/c2cs35127g] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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