1
|
Sgroi M, Hoey D, Medina Jimenez K, Bowden SL, Hope M, Wallington EJ, Schornack S, Bravo A, Paszkowski U. The receptor-like kinase ARK controls symbiotic balance across land plants. Proc Natl Acad Sci U S A 2024; 121:e2318982121. [PMID: 39012828 PMCID: PMC11287157 DOI: 10.1073/pnas.2318982121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Accepted: 05/14/2024] [Indexed: 07/18/2024] Open
Abstract
The mutualistic arbuscular mycorrhizal (AM) symbiosis arose in land plants more than 450 million years ago and is still widely found in all major land plant lineages. Despite its broad taxonomic distribution, little is known about the molecular components underpinning symbiosis outside of flowering plants. The ARBUSCULAR RECEPTOR-LIKE KINASE (ARK) is required for sustaining AM symbiosis in distantly related angiosperms. Here, we demonstrate that ARK has an equivalent role in symbiosis maintenance in the bryophyte Marchantia paleacea and is part of a broad AM genetic program conserved among land plants. In addition, our comparative transcriptome analysis identified evolutionarily conserved expression patterns for several genes in the core symbiotic program required for presymbiotic signaling, intracellular colonization, and nutrient exchange. This study provides insights into the molecular pathways that consistently associate with AM symbiosis across land plants and identifies an ancestral role for ARK in governing symbiotic balance.
Collapse
Affiliation(s)
- Mara Sgroi
- Crop Science Centre, Department of Plant Sciences, University of Cambridge, CambridgeCB3 0LE, United Kingdom
| | - David Hoey
- Sainsbury Laboratory, University of Cambridge, CambridgeCB2 1LR, United Kingdom
| | | | - Sarah L. Bowden
- National Institute of Agricultural Botany, CambridgeCB3 0LE, United Kingdom
| | - Matthew Hope
- National Institute of Agricultural Botany, CambridgeCB3 0LE, United Kingdom
| | - Emma J. Wallington
- National Institute of Agricultural Botany, CambridgeCB3 0LE, United Kingdom
| | - Sebastian Schornack
- Sainsbury Laboratory, University of Cambridge, CambridgeCB2 1LR, United Kingdom
| | - Armando Bravo
- Donald Danforth Plant Science Center, St. Louis, MO63132
| | - Uta Paszkowski
- Crop Science Centre, Department of Plant Sciences, University of Cambridge, CambridgeCB3 0LE, United Kingdom
| |
Collapse
|
2
|
Duckett JG, Pressel S, Kowal J. The biology of Marchantia polymorpha subsp . ruderalis Bischl. & Boissel. Dub in nature. FRONTIERS IN PLANT SCIENCE 2024; 15:1339832. [PMID: 38872896 PMCID: PMC11169808 DOI: 10.3389/fpls.2024.1339832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Accepted: 05/06/2024] [Indexed: 06/15/2024]
Abstract
Introduction Though used as the model liverwort in culture for several decades, the biology of Marchantia polymorpha subsp. ruderalis in nature has never been documented in detail in a single account. Methods Here we synthesize routine field observations documented with hundreds of images of M. ruderalis colonies (or groups) showing sex differentiation over 3 years on two populations of M. ruderalis after major heathland fires in 2020. Results Initial post-fire establishment is from airborne spores rather than a spore bank but thereafter spread is via gemmae which have less exacting germination requirements. Young sporelings are highly gemmiferous but gemmae production becomes less frequent after sex organ formation. Over the course of a year there are up to three waves of carpocephalum production with the overwhelming majority of antheridiophores appearing 2-3 months ahead of the archegoniophores though no differences in growth rates were apparent between male and female thalli. Spermatozoids are produced almost continuously throughout the year, whilst sporophyte maturation is restricted to the summer months. Discussion Because of the asynchrony between antheridiophore and archegoniophore production a 1:1 sex ratio is only apparent over this period. The spring months see an excess of males with more females in the summer. An almost 100% fertilization rate, with fertilization distances of up to 19 m far exceeding those in all other bryophytes, is attributed to vast spermatozoid production for most of the year, dispersal on surface oil films between thalli and highly effective intra-thallus spermatozoid transport via the pegged-rhizoid water-conducting system. Archegoniophores do develop on female-only populations but have shorter stalks than those where fertilization has occurred. Eventual disappearance post fires is attributed to a fall in topsoil nutrient levels preventing new sporeling establishment and competition from Ceratodon purpureus and Polytrichum spp. A major drought in the summer of 2022 almost wiped out the heathland Marchantia populations but all the other bryophytes survived.
Collapse
Affiliation(s)
| | - Silvia Pressel
- Research, The Natural History Museum, London, United Kingdom
| | - Jill Kowal
- Department of Ecosystem Stewardship, Royal Botanic Gardens Kew, London, United Kingdom
| |
Collapse
|
3
|
Simmons CR, Herman RA. Non-seed plants are emerging gene sources for agriculture and insect control proteins. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023; 116:23-37. [PMID: 37309832 DOI: 10.1111/tpj.16349] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 06/06/2023] [Accepted: 06/08/2023] [Indexed: 06/14/2023]
Abstract
The non-seed plants (e.g., charophyte algae, bryophytes, and ferns) have multiple human uses, but their contributions to agriculture and research have lagged behind seed plants. While sharing broadly conserved biology with seed plants and the major crops, non-seed plants sometimes possess alternative molecular and physiological adaptations. These adaptations may guide crop improvements. One such area is the presence of multiple classes of insecticidal proteins found in non-seed plant genomes which are either absent or widely diverged in seed plants. There are documented uses of non-seed plants, and ferns for example have been used in human diets. Among the occasional identifiable toxins or antinutritive components present in non-seed plants, none include these insecticidal proteins. Apart from these discrete risk factors which can be addressed in the safety assessment, there should be no general safety concern about sourcing genes from non-seed plant species.
Collapse
Affiliation(s)
- Carl R Simmons
- Corteva Agriscience, Trait Discovery, Johnston, Iowa, 50131, USA
| | - Rod A Herman
- Corteva Agriscience, Regulatory and Stewardship, Johnston, Iowa, 50131, USA
| |
Collapse
|
4
|
Ortiz-Rivero J, Garrido-Benavent I, Heiðmarsson S, de los Ríos A. Moss and Liverwort Covers Structure Soil Bacterial and Fungal Communities Differently in the Icelandic Highlands. MICROBIAL ECOLOGY 2023; 86:1893-1908. [PMID: 36802019 PMCID: PMC10497656 DOI: 10.1007/s00248-023-02194-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 02/09/2023] [Indexed: 06/18/2023]
Abstract
Cryptogamic covers extend over vast polar tundra regions and their main components, e.g., bryophytes and lichens, are frequently the first visible colonizers of deglaciated areas. To understand their role in polar soil development, we analyzed how cryptogamic covers dominated by different bryophyte lineages (mosses and liverworts) influence the diversity and composition of edaphic bacterial and fungal communities as well as the abiotic attributes of underlying soils in the southern part of the Highlands of Iceland. For comparison, the same traits were examined in soils devoid of bryophyte covers. We measured an increase in soil C, N, and organic matter contents coupled with a lower pH in association with bryophyte cover establishment. However, liverwort covers showed noticeably higher C and N contents than moss covers. Significant changes in diversity and composition of bacterial and fungal communities were revealed between (a) bare and bryophyte-covered soils, (b) bryophyte covers and the underlying soils, and (c) moss and liverworts covers. These differences were more obvious for fungi than bacteria, and involved different lineages of saprotrophic and symbiotic fungi, which suggests a certain specificity of microbial taxa to particular bryophyte groups. In addition, differences observed in the spatial structure of the two bryophyte covers may be also responsible for the detected differences in microbial community diversity and composition. Altogether, our findings indicate that soil microbial communities and abiotic attributes are ultimately affected by the composition of the most conspicuous elements of cryptogamic covers in polar regions, which is of great value to predict the biotic responses of these ecosystems to future climate change.
Collapse
Affiliation(s)
- Javier Ortiz-Rivero
- Department of Biogeochemistry and Microbial Ecology, National Museum of Natural Sciences (MNCN-CSIC), C/ Serrano 115 dpdo, E-28045 Madrid, Spain
| | - Isaac Garrido-Benavent
- Departament de Botànica i Geologia, Fac. CC. Biològiques, Universitat de València, C/ Doctor Moliner 50, E-46100 Burjassot, Valencia Spain
| | - Starri Heiðmarsson
- Icelandic Institute of Natural History, Akureyri Division, Borgir Nordurslod, 600 Akureyri, Iceland
- Present address: Northwest Iceland Nature Research Centre, Aðalgötu 2, 550 Sauðárkrókur, Iceland
| | - Asunción de los Ríos
- Department of Biogeochemistry and Microbial Ecology, National Museum of Natural Sciences (MNCN-CSIC), C/ Serrano 115 dpdo, E-28045 Madrid, Spain
| |
Collapse
|
5
|
Gómez-Espinoza J, Riquelme C, Romero-Villegas E, Ahumada-Rudolph R, Novoa V, Méndez P, Millar C, Fernández-Alarcón N, Garnica S, Rajchenberg M, Cabrera-Pardo JR. Diversity of Agaricomycetes in southern South America and their bioactive natural products. Nat Prod Res 2023:1-15. [PMID: 37661754 DOI: 10.1080/14786419.2023.2244126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Revised: 07/03/2023] [Accepted: 07/24/2023] [Indexed: 09/05/2023]
Abstract
Fungi have a unique metabolic plasticity allowing them to produce a wide range of natural products. Since the discovery of penicillin, an antibiotic of fungal origin, substantial efforts have been devoted globally to search for fungal-derived natural bioactive products. Andean region forests represent one of the few undisturbed ecosystems in the world with little human intervention. While these forests display a rich biological diversity, mycological and chemical studies in these environments have been scarce. This review aims to summarise all the efforts regarding the chemical or bioactivity analyses of Agaricomycetes (Basidiomycota) from southern South America environments. Overall, herein we report a total of 147 fungal species, 21 of them showing chemical characterisation and/or biological activity. In terms of chemical cores, furans, chlorinated phenol derivatives, polyenes, lactones, terpenes and himanimides have been reported. These natural products displayed a range of biological activities including antioxidant, antimicrobial, antifungal, neuroprotective and osteoclast-forming suppressing effects.
Collapse
Affiliation(s)
- Jonhatan Gómez-Espinoza
- Laboratorio de Química Aplicada y Sustentable (LabQAS), Departamento de Química, Universidad del Bío-Bío, Concepción, Chile
| | - Cristian Riquelme
- Programa de Doctorado en Ciencias mención Ecología y Evolución, Escuela de Graduados, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
- Laboratorio de Micología, Instituto de Bioquímica y Microbiología, Universidad Austral de Chile, Valdivia, Chile
| | - Enzo Romero-Villegas
- Laboratorio de Química Aplicada y Sustentable (LabQAS), Departamento de Química, Universidad del Bío-Bío, Concepción, Chile
| | - Ramón Ahumada-Rudolph
- Laboratorio de Química Aplicada y Sustentable (LabQAS), Departamento de Química, Universidad del Bío-Bío, Concepción, Chile
| | - Vanessa Novoa
- Instituto de Alta Investigación, Universidad de Tarapacá, Arica, Chile
| | - Paola Méndez
- Laboratorio de Química Aplicada y Sustentable (LabQAS), Departamento de Química, Universidad del Bío-Bío, Concepción, Chile
| | - Camila Millar
- Laboratorio de Química Aplicada y Sustentable (LabQAS), Departamento de Química, Universidad del Bío-Bío, Concepción, Chile
| | - Naomi Fernández-Alarcón
- Laboratorio de Química Aplicada y Sustentable (LabQAS), Departamento de Química, Universidad del Bío-Bío, Concepción, Chile
| | - Sigisfredo Garnica
- Laboratorio de Micología, Instituto de Bioquímica y Microbiología, Universidad Austral de Chile, Valdivia, Chile
| | - Mario Rajchenberg
- Centro de Investigación y Extensión Forestal Andino Patagónico (CIEFAP), Chubut, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas, (CONICET), Buenos Aires, Argentina
| | - Jaime R Cabrera-Pardo
- Laboratorio de Química Aplicada y Sustentable (LabQAS), Departamento de Química, Universidad del Bío-Bío, Concepción, Chile
| |
Collapse
|
6
|
Frangedakis E, Marron AO, Waller M, Neubauer A, Tse SW, Yue Y, Ruaud S, Waser L, Sakakibara K, Szövényi P. What can hornworts teach us? FRONTIERS IN PLANT SCIENCE 2023; 14:1108027. [PMID: 36968370 PMCID: PMC10030945 DOI: 10.3389/fpls.2023.1108027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Accepted: 02/13/2023] [Indexed: 06/18/2023]
Abstract
The hornworts are a small group of land plants, consisting of only 11 families and approximately 220 species. Despite their small size as a group, their phylogenetic position and unique biology are of great importance. Hornworts, together with mosses and liverworts, form the monophyletic group of bryophytes that is sister to all other land plants (Tracheophytes). It is only recently that hornworts became amenable to experimental investigation with the establishment of Anthoceros agrestis as a model system. In this perspective, we summarize the recent advances in the development of A. agrestis as an experimental system and compare it with other plant model systems. We also discuss how A. agrestis can help to further research in comparative developmental studies across land plants and to solve key questions of plant biology associated with the colonization of the terrestrial environment. Finally, we explore the significance of A. agrestis in crop improvement and synthetic biology applications in general.
Collapse
Affiliation(s)
| | - Alan O. Marron
- Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom
| | - Manuel Waller
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
- Zurich-Basel Plant Science Center, Zurich, Switzerland
| | - Anna Neubauer
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
- Zurich-Basel Plant Science Center, Zurich, Switzerland
| | - Sze Wai Tse
- Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom
| | - Yuling Yue
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
- Zurich-Basel Plant Science Center, Zurich, Switzerland
| | - Stephanie Ruaud
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
- Zurich-Basel Plant Science Center, Zurich, Switzerland
| | - Lucas Waser
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
- Zurich-Basel Plant Science Center, Zurich, Switzerland
- Department of Plant and Microbial Biology, University of Zürich, Zurich, Switzerland
| | | | - Péter Szövényi
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
- Zurich-Basel Plant Science Center, Zurich, Switzerland
| |
Collapse
|
7
|
Schreiber M, Rensing SA, Gould SB. The greening ashore. TRENDS IN PLANT SCIENCE 2022; 27:847-857. [PMID: 35739050 DOI: 10.1016/j.tplants.2022.05.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Revised: 03/30/2022] [Accepted: 05/05/2022] [Indexed: 06/15/2023]
Abstract
More than half a billion years ago a streptophyte algal lineage began terraforming the terrestrial habitat and the Earth's atmosphere. This pioneering step enabled the subsequent evolution of all complex life on land, and the past decade has uncovered that many traits, both morphological and genetic, once thought to be unique to land plants, are conserved across some streptophyte algae. They provided the common ancestor of land plants with a repertoire of genes, of which many were adapted to overcome the new biotic and abiotic challenges. Exploring these molecular adaptations in non-tracheophyte species may help us to better prepare all green life, including our crops, for the challenges precipitated by the climate change of the Anthropocene because the challenges mostly differ by the speed with which they are now being met.
Collapse
Affiliation(s)
- Mona Schreiber
- Plant Cell Biology, University of Marburg, 35043 Marburg, Germany.
| | - Stefan A Rensing
- Plant Cell Biology, University of Marburg, 35043 Marburg, Germany; Centre for Biological Signalling Studies (BIOSS), University of Freiburg, Freiburg, Germany.
| | - Sven B Gould
- Institute for Molecular Evolution, Heinrich Heine University (HHU) Düsseldorf, 40225 Düsseldorf, Germany.
| |
Collapse
|
8
|
Puginier C, Keller J, Delaux PM. Plant-microbe interactions that have impacted plant terrestrializations. PLANT PHYSIOLOGY 2022; 190:72-84. [PMID: 35642902 PMCID: PMC9434271 DOI: 10.1093/plphys/kiac258] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Accepted: 05/09/2022] [Indexed: 05/30/2023]
Abstract
Plants display a tremendous diversity of developmental and physiological features, resulting from gains and losses of functional innovations across the plant phylogeny. Among those, the most impactful have been undoubtedly the ones that allowed plant terrestrializations, the transitions from an aquatic to a terrestrial environment. Although the embryophyte terrestrialization has been particularly scrutinized, others occurred across the plant phylogeny with the involvement of mutualistic symbioses as a common theme. Here, we review the current pieces of evidence supporting that the repeated colonization of land by plants has been facilitated by interactions with mutualistic symbionts. In that context, we detail two of these mutualistic symbioses: the arbuscular mycorrhizal symbiosis in embryophytes and the lichen symbiosis in chlorophyte algae. We suggest that associations with bacteria should be revisited in that context, and we propose that overlooked symbioses might have facilitated the emergence of other land plant clades.
Collapse
Affiliation(s)
- Camille Puginier
- Laboratoire de Recherche en Sciences Végétales (LRSV), Université de Toulouse, CNRS, UPS, INP Toulouse, Castanet-Tolosan, 31326, France
| | - Jean Keller
- Laboratoire de Recherche en Sciences Végétales (LRSV), Université de Toulouse, CNRS, UPS, INP Toulouse, Castanet-Tolosan, 31326, France
| | | |
Collapse
|
9
|
Chen KH, Nelson J. A scoping review of bryophyte microbiota: diverse microbial communities in small plant packages. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:4496-4513. [PMID: 35536989 DOI: 10.1093/jxb/erac191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Accepted: 05/05/2022] [Indexed: 06/14/2023]
Abstract
Plant health depends not only on the condition of the plant itself but also on its diverse community of microbes, or microbiota. Just like the better-studied angiosperms, bryophytes (mosses, liverworts, and hornworts) harbor diverse communities of bacteria, archaea, fungi, and other microbial eukaryotes. Bryophytes are increasingly recognized as important model systems for understanding plant evolution, development, physiology, and symbiotic interactions. Much of the work on bryophyte microbiota in the past focused on specific symbiont types for each bryophyte group, but more recent studies are taking a broader view acknowledging the coexistence of diverse microbial communities in bryophytes. Therefore, this review integrates studies of bryophyte microbes from both perspectives to provide a holistic view of the existing research for each bryophyte group and on key themes. The systematic search also reveals the taxonomic and geographic biases in this field, including a severe under-representation of the tropics, very few studies on viruses or eukaryotic microbes beyond fungi, and a focus on mycorrhizal fungi studies in liverworts. Such gaps may have led to errors in conclusions about evolutionary patterns in symbiosis. This analysis points to a wealth of future research directions that promise to reveal how the distinct life cycles and physiology of bryophytes interact with their microbiota.
Collapse
Affiliation(s)
- Ko-Hsuan Chen
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Jessica Nelson
- Maastricht Science Programme, Maastricht University, Maastricht, The Netherlands
| |
Collapse
|
10
|
Allen JL, Lendemer JC. A call to reconceptualize lichen symbioses. Trends Ecol Evol 2022; 37:582-589. [PMID: 35397954 DOI: 10.1016/j.tree.2022.03.004] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 03/10/2022] [Accepted: 03/14/2022] [Indexed: 12/23/2022]
Abstract
Several decades of research across disciplines have overturned historical perspectives of symbioses dominated by binary characterizations of highly specific species-species interactions. This paradigm shift has unlocked the previously underappreciated and overlooked dynamism of fungal mutualisms such as mycorrhizae. Lichens are another example of important fungal mutualisms where reconceptualization is urgently needed to realize their potential as model systems. This reconceptualization requires both an objective synthesis of new data and envisioning a revised integrative approach that unifies the spectrum of ecology and evolution. We propose a ten-theme framework that if pursued would propel lichens to the vanguard of symbiotic theory.
Collapse
Affiliation(s)
- Jessica L Allen
- Eastern Washington University, Biology Department, Cheney, WA 99004, USA.
| | - James C Lendemer
- Institute of Systematic Botany, The New York Botanical Garden, Bronx, NY 10458-5126, USA.
| |
Collapse
|
11
|
Kowal J, Arrigoni E, Jarvis S, Zappala S, Forbes E, Bidartondo MI, Suz LM. Atmospheric pollution, soil nutrients and climate effects on Mucoromycota arbuscular mycorrhizal fungi. Environ Microbiol 2022; 24:3390-3404. [PMID: 35641308 PMCID: PMC9544493 DOI: 10.1111/1462-2920.16040] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 05/05/2022] [Accepted: 05/05/2022] [Indexed: 11/29/2022]
Abstract
Fine root endophyte mycorrhizal fungi in the Endogonales (Mucoromycota arbuscular mycorrhizal fungi, M‐AMF) are now recognized as at least as important globally as Glomeromycota AMF (G‐AMF), yet little is known about the environmental factors which influence M‐AMF diversity and colonization, partly because they typically only co‐colonize plants with G‐AMF. Wild populations of Lycopodiella inundata predominantly form mycorrhizas with M‐AMF and therefore allow focussed study of M‐AMF environmental drivers. Using microscopic examination and DNA sequencing we measured M‐AMF colonization and diversity over three consecutive seasons and modelled interactions between these response variables and environmental data. Significant relationships were found between M‐AMF colonization and soil S, P, C:N ratio, electrical conductivity, and the previously overlooked micronutrient Mn. Estimated N deposition was negatively related to M‐AMF colonization. Thirty‐nine Endogonales Operational Taxonomic Units (OTUs) were identified in L. inundata roots, a greater diversity than previously recognized in this plant. Endogonales OTU richness correlated negatively with soil C:N while community composition was mostly influenced by soil P. This study provides first evidence that M‐AMF have distinct ecological preferences in response to edaphic variables also related to air pollution. Future studies require site‐level atmospheric pollution monitoring to guide critical load policy for mycorrhizal fungi in heathlands and grasslands.
Collapse
Affiliation(s)
- J Kowal
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - E Arrigoni
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - S Jarvis
- UK Centre for Ecology & Hydrology, Lancaster, UK
| | - S Zappala
- Joint Nature Conservation Committee, Peterborough, UK
| | - E Forbes
- Joint Nature Conservation Committee, Peterborough, UK
| | - M I Bidartondo
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK.,Imperial College London, London, UK
| | - L M Suz
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| |
Collapse
|
12
|
Beyond Photoprotection: The Multifarious Roles of Flavonoids in Plant Terrestrialization. Int J Mol Sci 2022; 23:ijms23095284. [PMID: 35563675 PMCID: PMC9101737 DOI: 10.3390/ijms23095284] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 04/29/2022] [Accepted: 05/06/2022] [Indexed: 02/01/2023] Open
Abstract
Plants evolved an impressive arsenal of multifunctional specialized metabolites to cope with the novel environmental pressures imposed by the terrestrial habitat when moving from water. Here we examine the multifarious roles of flavonoids in plant terrestrialization. We reason on the environmental drivers, other than the increase in UV-B radiation, that were mostly responsible for the rise of flavonoid metabolism and how flavonoids helped plants in land conquest. We are reasonably based on a nutrient-deficiency hypothesis for the replacement of mycosporine-like amino acids, typical of streptophytic algae, with the flavonoid metabolism during the water-to-land transition. We suggest that flavonoids modulated auxin transport and signaling and promoted the symbiosis between plants and fungi (e.g., arbuscular mycorrhizal, AM), a central event for the conquest of land by plants. AM improved the ability of early plants to take up nutrients and water from highly impoverished soils. We offer evidence that flavonoids equipped early land plants with highly versatile “defense compounds”, essential for the new set of abiotic and biotic stressors imposed by the terrestrial environment. We conclude that flavonoids have been multifunctional since the appearance of plants on land, not only acting as UV filters but especially improving both nutrient acquisition and biotic stress defense.
Collapse
|
13
|
Howard N, Pressel S, Kaye RS, Daniell TJ, Field KJ. The potential role of Mucoromycotina 'fine root endophytes' in plant nitrogen nutrition. PHYSIOLOGIA PLANTARUM 2022; 174:e13715. [PMID: 35560043 PMCID: PMC9328347 DOI: 10.1111/ppl.13715] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Revised: 04/19/2022] [Accepted: 05/10/2022] [Indexed: 05/29/2023]
Abstract
Mycorrhizal associations between fungi and plant roots have globally significant impacts on nutrient cycling. Mucoromycotina 'fine root endophytes' (MFRE) are a distinct and recently characterised group of mycorrhiza-forming fungi that associate with the roots of a range of host plant species. Given their previous misidentification and assignment as arbuscular mycorrhizal fungi (AMF) of the Glomeromycotina, it is now important to untangle the specific form and function of MFRE symbioses. In particular, relatively little is known about the nature of MFRE colonisation and its role in N uptake and transfer to host plants. Even less is known about the mechanisms by which MFRE access and assimilate N, and how this N is processed and subsequently exchanged with host plants for photosynthates. Here, we summarise and contrast the structures formed by MFRE and arbuscular mycorrhizal fungi in host plants as well as compare the N source preference of each mycorrhizal fungal group with what is currently known for MFRE N uptake. We compare the mechanisms of N assimilation and transfer to host plants utilised by the main groups of mycorrhizal fungi and hypothesise potential mechanisms for MFRE N assimilation and transfer, outlining directions for future research.
Collapse
Affiliation(s)
- Nathan Howard
- Plants, Photosynthesis and Soil, School of BiosciencesUniversity of SheffieldSheffieldUK
| | - Silvia Pressel
- Department of Life SciencesNatural History MuseumLondonUK
| | - Ryan S. Kaye
- Plants, Photosynthesis and Soil, School of BiosciencesUniversity of SheffieldSheffieldUK
| | - Tim J. Daniell
- Plants, Photosynthesis and Soil, School of BiosciencesUniversity of SheffieldSheffieldUK
| | - Katie J. Field
- Plants, Photosynthesis and Soil, School of BiosciencesUniversity of SheffieldSheffieldUK
| |
Collapse
|
14
|
Abstract
The liverwort Marchantia polymorpha has been known to man for millennia due to its inclusion Greek herbals. Perhaps due to its familiarity and association with growth in, often, man-made disturbed habitats, it was readily used to address fundamental biological questions of the day, including elucidation of land plant life cycles in the late 18th century, the formulation of cell theory early in the 19th century and the discovery of the alternation of generations in land plants in the mid-19th century. Subsequently, Marchantia was used as model in botany classes. With the arrival of the molecular era, its organellar genomes, the chloroplast and mitochondrial, were some of the first to be sequenced from any plant. In the past two decades, molecular genetic tools have been applied such that genes may be manipulated seemingly at will. Here, are past, present, and some views to the future of Marchantia as a model.
Collapse
Affiliation(s)
- John L Bowman
- School of Biological Sciences, Monash University, Melbourne, VIC, Australia.
| |
Collapse
|
15
|
Sinanaj B, Hoysted GA, Pressel S, Bidartondo MI, Field KJ. Critical research challenges facing Mucoromycotina 'fine root endophytes'. THE NEW PHYTOLOGIST 2021; 232:1528-1534. [PMID: 34411307 DOI: 10.1111/nph.17684] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Accepted: 08/11/2021] [Indexed: 06/13/2023]
Affiliation(s)
- Besiana Sinanaj
- School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Grace A Hoysted
- Botany and Plant Science, School of Natural Sciences, National University of Ireland, Galway, H91 TK33, Ireland
| | - Silvia Pressel
- Department of Life Sciences, Natural History Museum, London, SW7 5BD, UK
| | - Martin I Bidartondo
- Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, Richmond, TW9 3DS, UK
- Department of Life Sciences, Imperial College London, London, SW7 2AZ, UK
| | - Katie J Field
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK
| |
Collapse
|
16
|
Hoysted GA, Kowal J, Pressel S, Duckett JG, Bidartondo MI, Field KJ. Carbon for nutrient exchange between Lycopodiella inundata and Mucoromycotina fine root endophytes is unresponsive to high atmospheric CO 2. MYCORRHIZA 2021; 31:431-440. [PMID: 33884466 PMCID: PMC8266774 DOI: 10.1007/s00572-021-01033-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Accepted: 04/14/2021] [Indexed: 05/26/2023]
Abstract
Non-vascular plants associating with arbuscular mycorrhizal (AMF) and Mucoromycotina 'fine root endophyte' (MFRE) fungi derive greater benefits from their fungal associates under higher atmospheric [CO2] (a[CO2]) than ambient; however, nothing is known about how changes in a[CO2] affect MFRE function in vascular plants. We measured movement of phosphorus (P), nitrogen (N) and carbon (C) between the lycophyte Lycopodiella inundata and Mucoromycotina fine root endophyte fungi using 33P-orthophosphate, 15 N-ammonium chloride and 14CO2 isotope tracers under ambient and elevated a[CO2] concentrations of 440 and 800 ppm, respectively. Transfers of 33P and 15 N from MFRE to plants were unaffected by changes in a[CO2]. There was a slight increase in C transfer from plants to MFRE under elevated a[CO2]. Our results demonstrate that the exchange of C-for-nutrients between a vascular plant and Mucoromycotina FRE is largely unaffected by changes in a[CO2]. Unravelling the role of MFRE in host plant nutrition and potential C-for-N trade changes between symbionts under different abiotic conditions is imperative to further our understanding of the past, present and future roles of plant-fungal symbioses in ecosystems.
Collapse
Affiliation(s)
- Grace A Hoysted
- Deparment of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK.
| | - Jill Kowal
- Comparative Plant & Fungal Biology, Royal Botanic Gardens, Kew, Richmond, TW9 3DS, UK
| | - Silvia Pressel
- Department of Life Sciences, Natural History Museum, London, SW7 5BD, UK
| | - Jeffrey G Duckett
- Department of Life Sciences, Natural History Museum, London, SW7 5BD, UK
| | - Martin I Bidartondo
- Comparative Plant & Fungal Biology, Royal Botanic Gardens, Kew, Richmond, TW9 3DS, UK
- Department of Life Sciences, Imperial College London, London, SW7 2AZ, UK
| | - Katie J Field
- Deparment of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK
| |
Collapse
|
17
|
Mitchell RL, Strullu-Derrien C, Sykes D, Pressel S, Duckett JG, Kenrick P. Cryptogamic ground covers as analogues for early terrestrial biospheres: Initiation and evolution of biologically mediated proto-soils. GEOBIOLOGY 2021; 19:292-306. [PMID: 33569915 DOI: 10.1111/gbi.12431] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2020] [Revised: 01/17/2021] [Accepted: 01/19/2021] [Indexed: 05/29/2023]
Abstract
Modern cryptogamic ground covers (CGCs), comprising assemblages of bryophytes (hornworts, liverworts, mosses), fungi, bacteria, lichens and algae, are thought to resemble early divergent terrestrial communities. However, limited in situ plant and other fossils in the rock record, and a lack of CGC-like soils reported in the pre-Silurian sedimentological record, have hindered understanding of the structure, composition and interactions within the earliest CGCs. A key question is how the earliest CGC-like organisms drove weathering on primordial terrestrial surfaces (regolith), leading to the early stages of soil development as proto-soils, and subsequently contributing to large-scale biogeochemical shifts in the Earth System. Here, we employed a novel qualitative, quantitative and multi-dimensional imaging approach through X-ray micro-computed tomography, scanning electron, and optical microscopy to investigate whether different combinations of modern CGC organisms from primordial-like settings in Iceland develop organism-specific soil forming features at the macro- and micro-scales. Additionally, we analysed CGCs growing on hard rocky substrates to investigate the initiation of weathering processes non-destructively in 3D. We show that thalloid CGC organisms (liverworts, hornworts) develop thin organic layers at the surface (<1 cm) with limited subsurface structural development, whereas leafy mosses and communities of mixed organisms form profiles that are thicker (up to ~ 7 cm), structurally more complex, and more organic-rich. We term these thin layers and profiles proto-soils. Component analyses from X-ray micro-computed tomography data show that thickness and structure of these proto-soils are determined by the type of colonising organism(s), suggesting that the evolution of more complex soils through the Palaeozoic may have been driven by a shift in body plan of CGC-like organisms from flattened and appressed to upright and leafy. Our results provide a framework for identifying CGC-like proto-soils in the rock record and a new proxy for understanding organism-soil interactions in ancient terrestrial biospheres and their contribution to the early stages of soil formation.
Collapse
Affiliation(s)
- Ria L Mitchell
- Earth Sciences Department, The Natural History Museum, London, UK
- Sheffield Tomography Centre (STC), Kroto Research Institute, The University of Sheffield, Sheffield, UK
| | - Christine Strullu-Derrien
- Earth Sciences Department, The Natural History Museum, London, UK
- Institut de Systématique, Evolution, Biodiversité (ISYEB), UMR7205, Muséum National d'Histoire naturelle, Sorbonne Université, CNRS, Paris, France
| | - Dan Sykes
- Imaging and Analysis Centre (IAC), The Natural History Museum, London, UK
- Henry Moseley X-ray Imaging Facility, School of Materials, The Royce Institute, The University of Manchester, Manchester, UK
| | - Silvia Pressel
- Life Sciences Department, The Natural History Museum, London, UK
| | | | - Paul Kenrick
- Earth Sciences Department, The Natural History Museum, London, UK
| |
Collapse
|
18
|
Hoysted GA, Bidartondo MI, Duckett JG, Pressel S, Field KJ. Phenology and function in lycopod-Mucoromycotina symbiosis. THE NEW PHYTOLOGIST 2021; 229:2389-2394. [PMID: 33064903 DOI: 10.1111/nph.17009] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Accepted: 10/09/2020] [Indexed: 05/27/2023]
Affiliation(s)
- Grace A Hoysted
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK
| | - Martin I Bidartondo
- Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, Richmond, TW9 3DS, UK
- Department of Life Sciences, Imperial College London, London, SW7 2AZ, UK
| | - Jeffrey G Duckett
- Department of Life Sciences, Natural History Museum, London, SW7 5BD, UK
| | - Silvia Pressel
- Department of Life Sciences, Natural History Museum, London, SW7 5BD, UK
| | - Katie J Field
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK
| |
Collapse
|
19
|
Commisso M, Guarino F, Marchi L, Muto A, Piro A, Degola F. Bryo-Activities: A Review on How Bryophytes Are Contributing to the Arsenal of Natural Bioactive Compounds against Fungi. PLANTS (BASEL, SWITZERLAND) 2021; 10:203. [PMID: 33494524 PMCID: PMC7911284 DOI: 10.3390/plants10020203] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Revised: 01/12/2021] [Accepted: 01/15/2021] [Indexed: 01/05/2023]
Abstract
Usually regarded as less evolved than their more recently diverged vascular sisters, which currently dominate vegetation landscape, bryophytes seem having nothing to envy to the defensive arsenal of other plants, since they had acquired a suite of chemical traits that allowed them to adapt and persist on land. In fact, these closest modern relatives of the ancestors to the earliest terrestrial plants proved to be marvelous chemists, as they traditionally were a popular remedy among tribal people all over the world, that exploit their pharmacological properties to cure the most different diseases. The phytochemistry of bryophytes exhibits a stunning assortment of biologically active compounds such as lipids, proteins, steroids, organic acids, alcohols, aliphatic and aromatic compounds, polyphenols, terpenoids, acetogenins and phenylquinones, thus it is not surprising that substances obtained from various species belonging to such ancestral plants are widely employed as antitumor, antipyretic, insecticidal and antimicrobial. This review explores in particular the antifungal potential of the three Bryophyta divisions-mosses (Musci), hornworts (Anthocerotae) and liverworts (Hepaticae)-to be used as a sources of interesting bioactive constituents for both pharmaceutical and agricultural areas, providing an updated overview of the latest relevant insights.
Collapse
Affiliation(s)
- Mauro Commisso
- Department of Biotechnology, University of Verona, Cà Vignal 1, Strada Le Grazie 15, 37134 Verona (VR), Italy;
| | - Francesco Guarino
- Department of Chemistry and Biology, University of Salerno, Via Giovanni Paolo II 132, 84084 Fisciano (SA), Italy;
| | - Laura Marchi
- Department of Medicine and Surgery, Respiratory Disease and Lung Function Unit, University of Parma, Via Gramsci 14, 43125 Parma (PR), Italy;
| | - Antonella Muto
- Department of Biology, Ecology and Earth Sciences, University of Calabria, Via Ponte P. Bucci 6b, Arcavacata di Rende, 87036 Cosenza (CS), Italy;
| | - Amalia Piro
- Laboratory of Plant Biology and Plant Proteomics (Lab.Bio.Pro.Ve), Department of Chemistry and Chemical Technologies, University of Calabria, Ponte P. Bucci 12 C, Arcavacata di Rende, 87036 Cosenza (CS), Italy;
| | - Francesca Degola
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco delle Scienze 11/A, 43124 Parma (PR), Italy
| |
Collapse
|
20
|
Harper CJ, Walker C, Schwendemann AB, Kerp H, Krings M. Archaeosporites rhyniensis gen. et sp. nov. (Glomeromycota, Archaeosporaceae) from the Lower Devonian Rhynie chert: a fungal lineage morphologically unchanged for more than 400 million years. ANNALS OF BOTANY 2020; 126:915-928. [PMID: 32577725 PMCID: PMC7539360 DOI: 10.1093/aob/mcaa113] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2020] [Accepted: 06/18/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND AND AIMS Structurally preserved arbuscular mycorrhizas from the Lower Devonian Rhynie chert represent core fossil evidence of the evolutionary history of mycorrhizal systems. Moreover, Rhynie chert fossils of glomeromycotan propagules suggest that this lineage of arbuscular fungi was morphologically diverse by the Early Devonian; however, only a small fraction of this diversity has been formally described and critically evaluated. METHODS Thin sections, previously prepared by grinding wafers of chert from the Rhynie beds, were studied by transmitted light microscopy. Fossils corresponding to the description of Archaeospora spp. occurred in 29 slides, and were measured, photographed and compared with modern-day species in that genus. KEY RESULTS Sessile propagules <85 µm in diameter, some still attached to a sporiferous saccule, were found in early land plant axes and the chert matrix; they developed, in a similar manner to extant Archaeospora, laterally or centrally within the saccule neck. Microscopic examination and comparison with extant fungi showed that, morphologically, the fossils share the characters used to circumscribe the genus Archaeospora (Glomeromycota; Archaeosporales; Archaeosporaceae). CONCLUSIONS The fossils can be assigned with confidence to the extant family Archaeosporaceae, but because molecular analysis is necessary to place organisms in these taxa to present-day genera and species, they are placed in a newly proposed fossil taxon, Archaeosporites rhyniensis.
Collapse
Affiliation(s)
- Carla J Harper
- Botany Department, School of Natural Sciences, Trinity College Dublin, Dublin 2, Ireland
- SNSB-Bayerische Staatssammlung für Paläontologie und Geologie, Munich, Germany
- Department of Ecology and Evolutionary Biology, and Natural History Museum and Biodiversity Institute, University of Kansas, Lawrence, KS, USA
| | - Christopher Walker
- Royal Botanic Garden Edinburgh, Edinburgh, UK
- School of Agriculture and Environment, University of Western Australia, Crawley, WA, Australia
| | | | - Hans Kerp
- Forschungsstelle für Paläobotanik am Geologisch-Paläontologischen Institut, Westfälische Wilhelms-Universität Münster, Münster, Germany
| | - Michael Krings
- SNSB-Bayerische Staatssammlung für Paläontologie und Geologie, Munich, Germany
- Department of Ecology and Evolutionary Biology, and Natural History Museum and Biodiversity Institute, University of Kansas, Lawrence, KS, USA
- Department für Geo- und Umweltwissenschaften, Paläontologie und Geobiologie, Ludwig-Maximilians-Universität, Munich, Germany
| |
Collapse
|
21
|
Kowal J, Arrigoni E, Serra J, Bidartondo M. Prevalence and phenology of fine root endophyte colonization across populations of Lycopodiella inundata. MYCORRHIZA 2020; 30:577-587. [PMID: 32734329 PMCID: PMC7392370 DOI: 10.1007/s00572-020-00979-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 07/23/2020] [Indexed: 05/12/2023]
Abstract
Mycorrhizal fungi are critical components of terrestrial habitats and agroecosystems. Recently, Mucoromycotina fine root endophyte fungi (MucFRE) were found to engage in nutritional mutualism with Lycopodiella inundata, which belongs to one of the earliest vascular plant lineages known to associate with MucFRE. The extent to which this mutualism plays a role in resilient plant populations can only be understood by examining its occurrence rate and phenological patterns. To test for prevalence and seasonality in colonization, we examined 1305 individual L. inundata roots from 275 plants collected during spring and autumn 2019 across 11 semi-natural heathlands in Britain and the Netherlands. We quantified presence/absence of fine root endophyte (FRE) hyphae and vesicles and explored possible relationships between temperature and precipitation in the months immediately before sampling. Fine root endophyte hyphae were dominant in all of the examined heathlands, and every colonized root had FRE in both cortical cells and root hairs. However, we found significant differences in colonization between the two seasons at every site. Overall, 14% of L. inundata roots were colonized in spring (2.4% with vesicles) compared with 86% in autumn (7.6% with vesicles). Colonization levels between populations were also significantly different, correlating with temperature and precipitation, suggesting some local environments may be more conducive to root and related hyphal growth. These marked seasonal differences in host-plant colonization suggest that results about FRE from single time point collections should be carefully interpreted. Our findings are relevant to habitat restoration, species conservation plans, agricultural bio-inoculation treatments, and microbial diversity studies.
Collapse
Affiliation(s)
- Jill Kowal
- Department of Comparative Plant & Fungal Biology, Royal Botanic Gardens, Kew, London, TW9 3AB, UK.
| | - Elena Arrigoni
- Department of Comparative Plant & Fungal Biology, Royal Botanic Gardens, Kew, London, TW9 3AB, UK
| | - Jordi Serra
- Department of Neuroscience, King's College London, London, UK
| | - Martin Bidartondo
- Department of Comparative Plant & Fungal Biology, Royal Botanic Gardens, Kew, London, TW9 3AB, UK
- Department of Life Sciences, Imperial College London, London, SW7 2AZ, UK
| |
Collapse
|