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Hojnik N, Shvalya V, Zavašnik J, Šribar J, Križaj I, Walsh JL. Combatting the antigenicity of common ragweed pollen and its primary allergen Amb a 1 with cold atmospheric pressure air plasma. JOURNAL OF HAZARDOUS MATERIALS 2024; 479:135640. [PMID: 39208626 DOI: 10.1016/j.jhazmat.2024.135640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 08/02/2024] [Accepted: 08/22/2024] [Indexed: 09/04/2024]
Abstract
Airborne allergens, especially those originating from various types of pollen, significantly compromise the health and well-being of individuals on a global scale. Here, cold atmospheric pressure plasma (CAP) created in ambient air was used to treat highly allergenic and invasive Ambrosia artemisiifolia pollen. Immunoassays were used to evaluate the impact of CAP on the principal A. artemisiifolia allergen Amb a 1, demonstrating that > 90 % reduction in antigenicity could be achieved. Chemical analyses using Fourier Transform infrared revealed that CAP induced significant alterations to proteins on the surface of pollen grains, resulting in a 43 % increase in the amide I peak area and a 57 % increase in the amide II peak area. These findings were corroborated by Raman and X-ray photoelectron spectroscopy, which indicated that the protein modifications induced by CAP were due to carbonylation and nitration/nitrosylation processes. Beyond protein transformations, CAP also induced notable oxidation and modification of lipid-like compounds, polysaccharides and sporopollenin. Evident transformations at the chemical level translated into morphological changes at the grain surface, manifesting as increased roughness via significant outer-layer etching. These findings underscore the potential of CAP technology as a viable approach for mitigating against the allergenicity of pollen, providing a deeper understanding into the underlying chemical mechanisms.
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Affiliation(s)
- Nataša Hojnik
- Department of Electrical Engineering and Electronics, University of Liverpool, Brownlow Hill, Liverpool L69 3GJ, United Kingdom; Department for Gaseous Electronics (F6), Jožef Stefan Institute, 1000 Ljubljana, Slovenia
| | - Vasyl Shvalya
- Department for Gaseous Electronics (F6), Jožef Stefan Institute, 1000 Ljubljana, Slovenia
| | - Janez Zavašnik
- Department for Gaseous Electronics (F6), Jožef Stefan Institute, 1000 Ljubljana, Slovenia
| | - Jernej Šribar
- Department of Molecular and Biomedical Sciences (B2), Jožef Stefan Institute, 1000 Ljubljana, Slovenia
| | - Igor Križaj
- Department of Molecular and Biomedical Sciences (B2), Jožef Stefan Institute, 1000 Ljubljana, Slovenia
| | - James L Walsh
- Department of Electrical Engineering and Electronics, University of Liverpool, Brownlow Hill, Liverpool L69 3GJ, United Kingdom; York Plasma Institute, School of Physics, Engineering & Technology, University of York, Heslington, York YO10 5DQ, United Kingdom.
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2
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Cubas Pereira D, Pupin B, de Simone Borma L. Influence of sample preparation methods on FTIR spectra for taxonomic identification of tropical trees in the Atlantic forest. Heliyon 2024; 10:e27232. [PMID: 38455590 PMCID: PMC10918226 DOI: 10.1016/j.heliyon.2024.e27232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 02/23/2024] [Accepted: 02/26/2024] [Indexed: 03/09/2024] Open
Abstract
The Atlantic forest is one of the world's major tropical biomes due to its rich biodiversity. Its vast diversity of plant species poses challenges in floristic surveys. Fourier transform infrared spectroscopy (FTIR) enables rapid and residue-free data collection, providing diverse applications in organic sample analysis. FTIR spectra quality depends on the sample preparation methodology. However, no research on FTIR spectroscopy methodology for taxonomy has been conducted with tropical tree species. Hence, this study addresses the sample preparation influence on FTIR spectra for the taxonomic classification of 12 tree species collected in the Serra do Mar State Park (PESM) - Cunha Nucleus - São Paulo State, Brazil. Spectra were obtained from intact fresh (FL), intact dried (DL), and heat-dried ground (GL) leaves. The spectra were evaluated through chemometrics using Principal Component Analysis (PCA), Hierarchical Cluster Analysis (HCA), and Linear Discriminant Analysis (LDA) with validation by LDA-PCA. The results demonstrate that sample preparation directly influences tropical species FTIR spectra categorization capability. The best taxonomic classification result for all techniques, validated by LDA-PCA, was obtained from GL. FTIR spectra evaluation through PCA, HCA, and LDA allow for the observation of phylogenetic relationships among the species. FTIR spectroscopy proves to be a viable technique for taxonomic evaluation of tree species in floristic exploration of tropical biomes which can complement traditional tools used for taxonomic studies.
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Affiliation(s)
- Douglas Cubas Pereira
- National Institute for Space Research (INPE), São José dos Campos, 12227-010, Brazil
| | - Breno Pupin
- National Institute for Space Research (INPE), São José dos Campos, 12227-010, Brazil
| | - Laura de Simone Borma
- National Institute for Space Research (INPE), São José dos Campos, 12227-010, Brazil
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Othman AM, Sabry YM, Khalil D, Bourouina T. Single Infrared Spectrum Enables Simultaneous Identification of (Bio)Chemical Nature and Particle Size of Microorganisms and Synthetic Microplastic Beads. Anal Chem 2023; 95:17826-17833. [PMID: 37982148 DOI: 10.1021/acs.analchem.3c03919] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2023]
Abstract
Populations of nearly identical chemical and biological microparticles include the synthetic microbeads used in cosmetic, biomedical, agri-food, and pharmaceutical industries as well as the class of living microorganisms such as yeast, pollen, and biological cells. Herein, we identify simultaneously the size and chemical nature of spherical microparticle populations with diameters larger than 1 μm. Our analysis relies on the extraction of both physical and chemical signatures from the same optical spectrum recorded using attenuated total reflection (ATR)-Fourier transform infrared (FTIR) spectroscopy. These signatures are the spectral resonances caused by the microparticles, which depend on their size and the absorption peaks revealing their chemical nature. We validate the method first on separated and mixed groups of spherical microplastic particles of two different diameters, where the method is used to calculate the diameter of the microspherical particles. Then, we apply the method to correctly identify and measure the diameter of Saccharomyces cerevisiae yeast cells. Theoretical simulations to help in understanding the effect of size distribution and dispersion support our results.
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Affiliation(s)
- Ahmed M Othman
- Université Gustave Eiffel, ESYCOM CNRS UMR 9007, Noisy-le-Grand ESIEE Paris, Noisy-le-Grand 93162, France
- Si-Ware Systems, 3 Khalid Ibn Al-Waleed St., Heliopolis, Cairo 11361, Egypt
| | - Yasser M Sabry
- Si-Ware Systems, 3 Khalid Ibn Al-Waleed St., Heliopolis, Cairo 11361, Egypt
- Faculty of Engineering, Ain-Shams University, 1 Elsarayat St. Abbassia, Cairo 11535, Egypt
| | - Diaa Khalil
- Si-Ware Systems, 3 Khalid Ibn Al-Waleed St., Heliopolis, Cairo 11361, Egypt
- Faculty of Engineering, Ain-Shams University, 1 Elsarayat St. Abbassia, Cairo 11535, Egypt
| | - Tarik Bourouina
- Université Gustave Eiffel, ESYCOM CNRS UMR 9007, Noisy-le-Grand ESIEE Paris, Noisy-le-Grand 93162, France
- Si-Ware Systems, 3 Khalid Ibn Al-Waleed St., Heliopolis, Cairo 11361, Egypt
- CINTRA, IRL 3288 CNRS-NTU-THALES, Nanyang Technological University, 637553 Singapore
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4
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Wang T, Bell BA, Fletcher WJ, Ryan PA, Wogelius RA. Influence of common palynological extraction treatments on ultraviolet absorbing compounds (UACs) in sub-fossil pollen and spores observed in FTIR spectra. Front Ecol Evol 2023. [DOI: 10.3389/fevo.2023.1096099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/09/2023] Open
Abstract
IntroductionBiological life, atmospheric circulation and the Earth’s climate may be influenced by UV-B radiation. In plants, Ultraviolet Absorbing Compounds (UACs) are an indicator of UV-B exposure, and the abundance of UACs in pollen and spores of embryophytes is measurable using Fourier Transform Infrared (FTIR) micro-Spectroscopy. However, understanding the influence of common chemical pre-treatments on sub-fossil pollen and spores with a view to UV-B reconstruction still requires investigation.MethodsHere, peat samples collected from a Late Holocene raised bog were treated with different chemicals (HCl, KOH, and acetolysis) for varying treatment times (up to 210 min). Pollen or spores of three common taxa (Alnus, Calluna and Sphagnum) were isolated and FTIR spectra obtained on individual grains. The spectra were compared to modern pollen and spore samples collected nearby.ResultsSpectra of modern and sub-fossil samples show several visible differences related to lipid and protoplast contents. The results of chemical treatments on sub-fossil pollen and spores reveal that HCl produced limited changes, while KOH and acetolysis altered several peaks, including the UAC-related aromatic peak at 1516 cm−1. We observe that all treatments modify the FTIR spectra to some degree, from weakest (HCl) to strongest (acetolysis). With respect to reduction of UAC peak area and treatment time, we observe in some cases a significant log-decay relationship, notably for KOH treatment on Calluna pollen and acetolysis on Sphagnum spores. Compared to untreated control samples, UAC peak area in Alnus, Calluna and Sphagnum reduced by 68%, 69% and 60% respectively, after only 3 min of acetolysis treatment. After 60 minutes of acetolysis treatment UAC peaks were reduced by 77%, 84% and 88%.DiscussionDue to the potential for taxon-specific effects and significant reductions in UAC peak area even within short treatment times, our recommendation for future applications in palaeoecological studies on palynomorph chemistry is to avoid chemical digestions in the pollen extraction process in favour of separation methods including micro-sieving and density separation.
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Kasprzyk I. Forensic botany: who?, how?, where?, when? Sci Justice 2023; 63:258-275. [PMID: 36870705 DOI: 10.1016/j.scijus.2023.01.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/31/2022] [Revised: 01/09/2023] [Accepted: 01/15/2023] [Indexed: 01/19/2023]
Abstract
Plants are a good source of biological forensic evidence; this is due to their ubiquity, their ability to collect reference material, and their sensitivity to environmental changes. However, in many countries, botanical evidence is recognised as being scientifically. Botanical evidence is not mostly used for perpertration, instead it tends to serve as circumstantial evidence. Plant materials constitute the basis, among others, for linking a suspect or object to a crime scene or a victim, confirming or not confirming an alibi, determining the post-mortem interval, and determining the origin of food/object. Forensic botany entails field work, knowledge of plants, understanding ecosystem processes, and a basis understaning of geoscience. In this study, experiments with mammal cadavers were conducted to determine the occurence of an event. The simplest criterion characterising botanical evidence is its size. Therefore, macroremains include whole plants or their larger fragments (e.g. tree bark, leaves, seeds, prickles, and thorns), whereas microscopic evidence includes palynomorphs (spores and pollen grains), diatoms, and tissues. Botanical methods allow for an analysis to be repeated multiple times and the test material is easy to collect in the field. Forensic botany can be supplemented with molecular analyses, which, although specific and sensitive, still require validation.
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Affiliation(s)
- Idalia Kasprzyk
- Institute of Biology and Biotechnology, College of Natural Sciences, University of Rzeszów, Al. Rejtana 16c, 35-959 Rzeszów, Poland.
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Kerienė I, Šaulienė I, Šukienė L, Judžentienė A, Ligor M, Buszewski B. Patterns of Phenolic Compounds in Betula and Pinus Pollen. PLANTS (BASEL, SWITZERLAND) 2023; 12:356. [PMID: 36679068 PMCID: PMC9865354 DOI: 10.3390/plants12020356] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Revised: 01/06/2023] [Accepted: 01/10/2023] [Indexed: 06/17/2023]
Abstract
In this study, phenolic compounds and their antioxidant activity in the pollen of anemophilous Betula and Pinus were determined. Spectrophotometric, high-performance thin-layer and liquid chromatography methods were applied. Free phenolic compounds (free PC) and phenolic compounds bound to the cell wall (bound PC) were analysed in the pollen extracts. Regardless of the pollen species, their content was 20% higher than that in bound PC extracts. Pinus pollen extracts contained 2.5 times less phenolic compounds compared to Betula. Free PC extraction from the deeper layers of Pinus pollen was minimal; the same content of phenolic compounds was obtained in both types of extracts. The bioactivity of pollen (p < 0.05) is related to the content of phenolic compounds and flavonoids in Betula free PC and in bound PC, and only in free PC extracts of Pinus. Rutin, chlorogenic and trans-ferulic acids were characterised by antioxidant activity. Phenolic acids accounted for 70−94%, while rutin constituted 2−3% of the total amount in the extracts. One of the dominant phenolic acids was trans-ferulic acid in all the Betula and Pinus samples. The specific compounds were vanillic and chlorogenic acids of Betula pollen extracts, while Pinus extracts contained gallic acid. The data obtained for the phenolic profiles and antioxidant activity of Betula and Pinus pollen can be useful for modelling food chains in ecosystems.
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Affiliation(s)
- Ilona Kerienė
- Regional Development Institute, Šiauliai Academy, Vilnius University, 84 Vytauto Str., LT-76352 Šiauliai, Lithuania
| | - Ingrida Šaulienė
- Regional Development Institute, Šiauliai Academy, Vilnius University, 84 Vytauto Str., LT-76352 Šiauliai, Lithuania
| | - Laura Šukienė
- Regional Development Institute, Šiauliai Academy, Vilnius University, 84 Vytauto Str., LT-76352 Šiauliai, Lithuania
| | - Asta Judžentienė
- Center for Physical Sciences and Technology, Department of Organic Chemistry, Saulėtekio Avenue 3, LT-10257 Vilnius, Lithuania
- Life Sciences Center, Institute of Biosciences, Vilnius University, Saulėtekio Avenue 7, LT-10257 Vilnius, Lithuania
| | - Magdalena Ligor
- Department of Environmental Chemistry and Bioanalytics, Faculty of Chemistry, Nicolaus Copernicus University, 7 Gagarina Str., 87-100 Torun, Poland
| | - Bogusław Buszewski
- Department of Environmental Chemistry and Bioanalytics, Faculty of Chemistry, Nicolaus Copernicus University, 7 Gagarina Str., 87-100 Torun, Poland
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Characterization of Romanian Bee Pollen—An Important Nutritional Source. Foods 2022; 11:foods11172633. [PMID: 36076817 PMCID: PMC9455760 DOI: 10.3390/foods11172633] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2022] [Revised: 08/22/2022] [Accepted: 08/25/2022] [Indexed: 11/19/2022] Open
Abstract
Bee pollen represents an important bee product, which is produced by mixing flower pollens with nectar honey and bee’s salivary substances. It represents an important source of phenolic compounds which can have great importance for importance for prophylaxis of diseases, particularly to prevent cardiovascular and neurodegenerative disorders, those having direct correlation with oxidative damage. The aim of this study was to characterize 24 bee pollen samples in terms of physicochemical parameters, organic acids, total phenolic content, total flavonoid content, individual phenolics compounds, fatty acids, and amino acids from the Nort East region of Romania, which have not been studied until now. The bee pollen can be considered as a high protein source (the mean concentration was 22.31% d.m.) with a high energy value (390.66 kcal/100 g). The total phenolic content ranged between 4.64 and 17.93 mg GAE/g, while the total flavonoid content ranged between 4.90 and 20.45 mg QE/g. The high protein content was observed in Robinia pseudoacacia, the high content of lipids was observed in Robinia pseudoacacia pollen, the high fructose content in Prunus spp. pollen while the high F/G ratio was observed in Pinaceae spp. pollen. The high TPC was observed in Prunus spp. pollen, the high TFC was observed in Robinia pseudoacacia pollen, the high free amino acid content was observed in Pinaceae spp. pollen, and the high content of PUFA was reported in Taraxacum spp. pollen. A total of 16 amino acids (eight essential and eight non-essential amino acids) were quantified in the bee pollen samples analyzed. The total content of the amino acids determined for the bee pollen samples varied between 11.31 µg/mg and 45.99 µg/mg. Our results can indicate that the bee pollen is a rich source of protein, fatty acids, amino acids and bioactive compounds.
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8
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Stiebing C, Post N, Schindler C, Göhrig B, Lux H, Popp J, Heutelbeck A, Schie IW. Revealing the Chemical Composition of Birch Pollen Grains by Raman Spectroscopic Imaging. Int J Mol Sci 2022; 23:ijms23095112. [PMID: 35563504 PMCID: PMC9101400 DOI: 10.3390/ijms23095112] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 04/26/2022] [Accepted: 04/28/2022] [Indexed: 02/01/2023] Open
Abstract
The investigation of the biochemical composition of pollen grains is of the utmost interest for several environmental aspects, such as their allergenic potential and their changes in growth conditions due to climatic factors. In order to fully understand the composition of pollen grains, not only is an in-depth analysis of their molecular components necessary but also spatial information of, e.g., the thickness of the outer shell, should be recorded. However, there is a lack of studies using molecular imaging methods for a spatially resolved biochemical composition on a single-grain level. In this study, Raman spectroscopy was implemented as an analytical tool to investigate birch pollen by imaging single pollen grains and analyzing their spectral profiles. The imaging modality allowed us to reveal the layered structure of pollen grains based on the biochemical information of the recorded Raman spectra. Seven different birch pollen species collected at two different locations in Germany were investigated and compared. Using chemometric algorithms such as hierarchical cluster analysis and multiple-curve resolution, several components of the grain wall, such as sporopollenin, as well as the inner core presenting high starch concentrations, were identified and quantified. Differences in the concentrations of, e.g., sporopollenin, lipids and proteins in the pollen species at the two different collection sites were found, and are discussed in connection with germination and other growth processes.
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Affiliation(s)
- Clara Stiebing
- Leibniz Institute of Photonic Technology (Leibniz-IPHT), Albert-Einstein-Straße 9, 07745 Jena, Germany; (C.S.); (J.P.)
| | - Nele Post
- Department of Medical Engineering and Biotechnology, University of Applied Sciences Jena, Carl-Zeiss-Promenade 2, 07745 Jena, Germany;
| | - Claudia Schindler
- Institute of Occupational, Social and Environmental Medicine, Jena University Hospital, Erlanger Allee 103, 07747 Jena, Germany; (C.S.); (B.G.); (H.L.); (A.H.)
| | - Bianca Göhrig
- Institute of Occupational, Social and Environmental Medicine, Jena University Hospital, Erlanger Allee 103, 07747 Jena, Germany; (C.S.); (B.G.); (H.L.); (A.H.)
| | - Harald Lux
- Institute of Occupational, Social and Environmental Medicine, Jena University Hospital, Erlanger Allee 103, 07747 Jena, Germany; (C.S.); (B.G.); (H.L.); (A.H.)
- Department of Psychiatry, Psychotherapy and Psychosomatic Medicine, Brandenburg Medical School, 16816 Neuruppin, Germany
| | - Jürgen Popp
- Leibniz Institute of Photonic Technology (Leibniz-IPHT), Albert-Einstein-Straße 9, 07745 Jena, Germany; (C.S.); (J.P.)
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, 07743 Jena, Germany
| | - Astrid Heutelbeck
- Institute of Occupational, Social and Environmental Medicine, Jena University Hospital, Erlanger Allee 103, 07747 Jena, Germany; (C.S.); (B.G.); (H.L.); (A.H.)
| | - Iwan W. Schie
- Leibniz Institute of Photonic Technology (Leibniz-IPHT), Albert-Einstein-Straße 9, 07745 Jena, Germany; (C.S.); (J.P.)
- Department of Medical Engineering and Biotechnology, University of Applied Sciences Jena, Carl-Zeiss-Promenade 2, 07745 Jena, Germany;
- Correspondence:
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Werner M, Bilińska-Prałat D, Kryza M, Guzikowski J, Malkiewicz M, Rapiejko P, Chłopek K, Dąbrowska-Zapart K, Lipiec A, Jurkiewicz D, Kalinowska E, Majkowska-Wojciechowska B, Myszkowska D, Piotrowska-Weryszko K, Puc M, Rapiejko A, Siergiejko G, Weryszko-Chmielewska E, Wieczorkiewicz A, Ziemianin M. The impact of data assimilation into the meteorological WRF model on birch pollen modelling. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 807:151028. [PMID: 34666079 DOI: 10.1016/j.scitotenv.2021.151028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 10/12/2021] [Accepted: 10/13/2021] [Indexed: 06/13/2023]
Abstract
We analyse the impact of ground-based data assimilation to the Weather Research and Forecasting (WRF) meteorological model on parameters relevant for birch pollen emission calculations. Then, we use two different emission databases (BASE - no data assimilation, OBSNUD - data assimilation for the meteorological model) in the chemical transport model and evaluate birch pollen concentrations. Finally, we apply a scaling factor for the emissions (BASE and OBSNUD), based on the ratio between simulated and observed seasonal pollen integral (SPIn) to analyse its impact on birch concentrations over Central Europe. Assimilation of observational data significantly reduces model overestimation of air temperature, which is the main parameter responsible for the start of pollen emission and amount of released pollen. The results also show that a relatively small bias in air temperature from the model can lead to significant differences in heating degree days (HDD) value. This may cause the HDD threshold to be attained several days earlier/later than indicated from observational data which has further impact on the start of pollen emission. Even though the bias for air temperature was reduced for OBSNUD, the model indicates a start for the birch pollen season that is too early compared to observations. The start date of the season was improved at two of the 11 stations in Poland. Data assimilation does not have a significant impact on the season's end or SPIn value. The application of the SPIn factor for the emissions results in a much closer birch pollen concentration level to observations even though the factor does not improve the start or end of the pollen season. The post-processing of modelled meteorological fields, such as the application of bias correction, can be considered as a way to further improve the pollen emission modelling.
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Affiliation(s)
- Małgorzata Werner
- Department of Climatology and Atmosphere Protection, University of Wroclaw, ul. Kosiby 8, 51-621 Wroclaw, Poland.
| | - Daria Bilińska-Prałat
- Department of Climatology and Atmosphere Protection, University of Wroclaw, ul. Kosiby 8, 51-621 Wroclaw, Poland
| | - Maciej Kryza
- Department of Climatology and Atmosphere Protection, University of Wroclaw, ul. Kosiby 8, 51-621 Wroclaw, Poland
| | - Jakub Guzikowski
- Department of Climatology and Atmosphere Protection, University of Wroclaw, ul. Kosiby 8, 51-621 Wroclaw, Poland
| | - Małgorzata Malkiewicz
- Laboratory of Paleobotany, Department of Stratigraphical Geology, Institute of Geological Sciences, University of Wroclaw, Poland
| | - Piotr Rapiejko
- Department of Otolaryngology with Division of Cranio-Maxillo-Facial Surgery, Military Institute of Medicine, Warsaw, Poland; Allergen Research Center Ltd., Warsaw, Poland
| | - Kazimiera Chłopek
- Institute of Earth Sciences, Faculty of Natural Sciences, University of Silesia in Katowice, Poland
| | | | - Agnieszka Lipiec
- Department of Prevention of Environmental Hazards, Allergology and Immunology, Medical University of Warsaw, Poland
| | - Dariusz Jurkiewicz
- Department of Otolaryngology with Division of Cranio-Maxillo-Facial Surgery, Military Institute of Medicine, Warsaw, Poland
| | | | | | - Dorota Myszkowska
- Department of Clinical and Environmental Allergology, Jagiellonian University Medical College, Poland
| | | | - Małgorzata Puc
- Institute of Marine & Environmental Sciences, University of Szczecin, Szczecin, Poland
| | | | - Grzegorz Siergiejko
- Paediatrics, Gastroenterology and Allergology Department, University Children Hospital, Bialystok, Poland
| | | | | | - Monika Ziemianin
- Department of Clinical and Environmental Allergology, Jagiellonian University Medical College, Poland
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10
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Gierlicka I, Kasprzyk I, Wnuk M. Imaging Flow Cytometry as a Quick and Effective Identification Technique of Pollen Grains from Betulaceae, Oleaceae, Urticaceae and Asteraceae. Cells 2022; 11:cells11040598. [PMID: 35203248 PMCID: PMC8870286 DOI: 10.3390/cells11040598] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2022] [Revised: 02/05/2022] [Accepted: 02/06/2022] [Indexed: 02/01/2023] Open
Abstract
Despite the continuous and intensive development of laboratory techniques, a light microscope is still the most common tool used in pollen grains differentiation. However, microscopy is time-consuming and needs well-educated and experienced researchers. Other currently used techniques can be categorised as images and non-images analysis, but each has certain limitations. We propose a new approach to differentiate pollen grains using the Imaging Flow Cytometry (IFC) technique. It allows for high-throughput fluorescence data recording, which, in contrast to the standard FC, also enables real-time control of the results thanks to the possibility of digital image recording of cells flowing through the measuring capillary. The developed method allows us to determine the characteristics of the pollen grains population based on the obtained fluorescence data, using various combinations of parameters available in the IDEAS software, which can be analysed on different fluorescence channels. On this basis, we distinguished pollen grains both between and within different genera belonging to the Betulaceae, Oleaceae, Urticaceae and Asteraceae families. Thereby, we prove that the proposed methodology is sufficient for accurate, fast, and cost-effective identification and potentially can be used in the routine analysis of allergenic pollen grains.
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Affiliation(s)
- Iwona Gierlicka
- Department of Biology, Institute of Biology and Biotechnology, College of Natural Sciences, University of Rzeszow, Pigonia 1, 35-310 Rzeszow, Poland; (I.G.); (I.K.)
| | - Idalia Kasprzyk
- Department of Biology, Institute of Biology and Biotechnology, College of Natural Sciences, University of Rzeszow, Pigonia 1, 35-310 Rzeszow, Poland; (I.G.); (I.K.)
| | - Maciej Wnuk
- Department of Biotechnology, Institute of Biology and Biotechnology, College of Natural Sciences, University of Rzeszow, Pigonia 1, 35-310 Rzeszow, Poland
- Correspondence: ; Tel.: +48-17-851-86-09
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11
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Fan B, Wang Q, Wu W, Zhou Q, Li D, Xu Z, Fu L, Zhu J, Karimi-Maleh H, Lin CT. Electrochemical Fingerprint Biosensor for Natural Indigo Dye Yielding Plants Analysis. BIOSENSORS-BASEL 2021; 11:bios11050155. [PMID: 34068869 PMCID: PMC8153556 DOI: 10.3390/bios11050155] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Revised: 04/28/2021] [Accepted: 05/12/2021] [Indexed: 02/07/2023]
Abstract
Indigo is a plant dye that has been used as an important dye by various ancient civilizations throughout history. Today, due to environmental and health concerns, plant indigo is re-entering the market. Strobilanthes cusia (Nees) Kuntze is the most widely used species in China for indigo preparation. However, other species under Strobilanthes have a similar feature. In this work, 12 Strobilanthes spp. were analyzed using electrochemical fingerprinting technology. Depending on their electrochemically active molecules, they can be quickly identified by fingerprinting. In addition, the fingerprint obtained under different conditions can be used to produce scattered patter and heatmap. These patterns make plant identification more convenient. Since the electrochemically active components in plants reflect the differences at the gene level to some extent, the obtained electrochemical fingerprints are further used for the discussion of phylogenetics.
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Affiliation(s)
- Boyuan Fan
- Key Laboratory of Novel Materials for Sensor of Zhejiang Province, College of Materials and Environmental Engineering, Hangzhou Dianzi University, Hangzhou 310018, China; (B.F.); (W.W.); (Q.Z.)
| | - Qiong Wang
- Institute of Botany, Jiangsu Province & Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing 210014, China; (Q.W.); (D.L.); (Z.X.)
- The Jiangsu Provincial Platform for Conservation and Utilization of Agricultural Germplasm, Nanjing 210014, China
| | - Weihong Wu
- Key Laboratory of Novel Materials for Sensor of Zhejiang Province, College of Materials and Environmental Engineering, Hangzhou Dianzi University, Hangzhou 310018, China; (B.F.); (W.W.); (Q.Z.)
| | - Qinwei Zhou
- Key Laboratory of Novel Materials for Sensor of Zhejiang Province, College of Materials and Environmental Engineering, Hangzhou Dianzi University, Hangzhou 310018, China; (B.F.); (W.W.); (Q.Z.)
| | - Dongling Li
- Institute of Botany, Jiangsu Province & Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing 210014, China; (Q.W.); (D.L.); (Z.X.)
- The Jiangsu Provincial Platform for Conservation and Utilization of Agricultural Germplasm, Nanjing 210014, China
| | - Zenglai Xu
- Institute of Botany, Jiangsu Province & Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing 210014, China; (Q.W.); (D.L.); (Z.X.)
- The Jiangsu Provincial Platform for Conservation and Utilization of Agricultural Germplasm, Nanjing 210014, China
| | - Li Fu
- Key Laboratory of Novel Materials for Sensor of Zhejiang Province, College of Materials and Environmental Engineering, Hangzhou Dianzi University, Hangzhou 310018, China; (B.F.); (W.W.); (Q.Z.)
- Correspondence:
| | - Jiangwei Zhu
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China;
| | - Hassan Karimi-Maleh
- School of Resources and Environment, University of Electronic Science and Technology of China, Xiyuan Ave, Chengdu 611731, China;
- Department of Chemical Engineering, Quchan University of Technology, Quchan 9477177870, Iran
- Department of Chemical Sciences, Doornfontein Campus, University of Johannesburg, P.O. Box 17011, Johannesburg 2028, South Africa
| | - Cheng-Te Lin
- Key Laboratory of Marine Materials and Related Technologies, Zhejiang Key Laboratory of Marine Materials and Protective Technologies, Ningbo Institute of Materials Technology and Engineering (NIMTE), Chinese Academy of Sciences, Ningbo 315201, China;
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12
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Lobaton J, Andrew R, Duitama J, Kirkland L, Macfadyen S, Rader R. Using RNA-seq to characterize pollen-stigma interactions for pollination studies. Sci Rep 2021; 11:6635. [PMID: 33758263 PMCID: PMC7988043 DOI: 10.1038/s41598-021-85887-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Accepted: 03/08/2021] [Indexed: 11/18/2022] Open
Abstract
Insects are essential for the reproduction of pollinator-dependent crops and contribute to the pollination of 87% of wild plants and 75% of the world’s food crops. Understanding pollen flow dynamics between plants and pollinators is thus essential to manage and conserve wild plants and ensure yields are maximized in food crops. However, the determination of pollen transfer in the field is complex and laborious. We developed a field experiment in a pollinator-dependent crop and used high throughput RNA sequencing (RNA-seq) to quantify pollen flow by measuring changes in gene expression between pollination treatments across different apple (Malus domestica Borkh.) cultivars. We tested three potential molecular indicators of successful pollination and validated these results with field data by observing single and multiple visits by honey bees (Apis mellifera) to apple flowers and measured fruit set in a commercial apple orchard. The first indicator of successful outcrossing was revealed via differential gene expression in the cross-pollination treatments after 6 h. The second indicator of successful outcrossing was revealed by the expression of specific genes related to pollen tube formation and defense response at three different time intervals in the stigma and the style following cross-pollination (i.e. after 6, 24, and 48 h). Finally, genotyping variants specific to donor pollen could be detected in cross-pollination treatments, providing a third indicator of successful outcrossing. Field data indicated that one or five flower visits by honey bees were insufficient and at least 10 honey bee flower visits were required to achieve a 25% probability of fruit set under orchard conditions. By combining the genotyping data, the differential expression analysis, and the traditional fruit set field experiments, it was possible to evaluate the pollination effectiveness of honey bee visits under orchards conditions. This is the first time that pollen-stigma-style mRNA expression analysis has been conducted after a pollinator visit (honey bee) to a plant (in vivo apple flowers). This study provides evidence that mRNA sequencing can be used to address complex questions related to stigma–pollen interactions over time in pollination ecology.
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Affiliation(s)
- Juan Lobaton
- School of Environmental and Rural Science, University of New England, Armidale, Australia. .,CSIRO, Clunies Ross St., Acton, ACT, Australia.
| | - Rose Andrew
- School of Environmental and Rural Science, University of New England, Armidale, Australia
| | - Jorge Duitama
- Systems and Computing, Engineering Department, Universidad de Los Andes, Bogota, Colombia
| | - Lindsey Kirkland
- School of Environmental and Rural Science, University of New England, Armidale, Australia
| | | | - Romina Rader
- School of Environmental and Rural Science, University of New England, Armidale, Australia
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13
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Piechowicz B, Sadło S, Woś I, Białek J, Depciuch J, Podbielska M, Szpyrka E, Kozioł K, Piechowicz I, Koziorowska A. Treating honey bees with an extremely low frequency electromagnetic field and pesticides: Impact on the rate of disappearance of azoxystrobin and λ-cyhalothrin and the structure of some functional groups of the probabilistic molecules. ENVIRONMENTAL RESEARCH 2020; 190:109989. [PMID: 32758720 DOI: 10.1016/j.envres.2020.109989] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 07/20/2020] [Accepted: 07/20/2020] [Indexed: 06/11/2023]
Abstract
The purpose of these laboratory tests was to assess the impact of 50 Hz EMF (electromagnetic field) on the disappearance of azoxystrobin (active ingredient (AI) of Amistar 250 SC) and λ-cyhalothrin (AI of Karate Zeon 050 CS) in the body of honey bees (Apis mellifera) and the structure of some functional groups of the probabilistic molecules in their organisms. Amistar 250 SC (an azoxystrobin-based fungicide; ABF) and Karate Zeon 050 CS (a λ-cyhalothrin-based insecticide; CBI) are plant protection products (PPPs) applied to bee-pollinated-crops. Chromatographic methods were used to assess the rate of AI disappearance. EMF affected the rate of disappearance of azoxystrobin and λ-cyhalothrin in bees within 6 h of intoxication. When these substances were used separately their disappearance in the presence of EMF slowed from 12.6% to 10.5% h-1 and from 9.2% to 4.8% h-1, respectively, and accelerated when used in a mixture, from 14.1% to 14.7% h-1 and from 9.3% to 11.5% h-1 respectively. Fourier Transform Infrared (FTIR) spectroscopy was used to analyze changes in the functional groups of the probabilistic molecules of the tested bees. To obtain the information about the spectra variations we used the Principal Component Analysis. It has been shown, that EMF statistically significantly interferes with amide I and II, symmetric PO32- group from DNA, RNA and phospholipids vibrations. It also increased the number of changes of functional groups of the probabilistic molecules caused by ABF, but at the same time limited the changes in the functional groups studied in bees treated with CBI and a mixture containing both of them. In addition, exposure to EMF in bees treated with fungicide or insecticide, separately, and with both preparations caused differences (p < 0.05) in the secondary structure of proteins compared to controls. The obtained results indicate that EMF may affect the rate of metabolism and the detoxification process of pesticides in bees, depending on the AI of PPPs, applied individually or together. However, further detailed research is required to explain the mechanism of EMF as a detoxification modulator.
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Affiliation(s)
- Bartosz Piechowicz
- College of Natural Sciences, Institute of Biology and Biotechnology, University of Rzeszow, Rzeszow, Poland
| | - Stanisław Sadło
- Retired Professor at the University of Rzeszow, Ul Rejtana 16c, 35-959, Rzeszow, Poland
| | - Izabela Woś
- Laboratory for Translational Research in Medicine, Centre for Innovative Research in Medical and Natural Sciences, College for Medical Sciences of University of Rzeszow, Rzeszow, Poland
| | - Justyna Białek
- College of Natural Sciences, Institute of Biology and Biotechnology, University of Rzeszow, Rzeszow, Poland
| | - Joanna Depciuch
- Institute of Nuclear Physics Polish Academy of Sciences, Krakow, Poland
| | - Magdalena Podbielska
- College of Natural Sciences, Institute of Biology and Biotechnology, University of Rzeszow, Rzeszow, Poland
| | - Ewa Szpyrka
- College of Natural Sciences, Institute of Biology and Biotechnology, University of Rzeszow, Rzeszow, Poland
| | - Katarzyna Kozioł
- College of Natural Sciences, Institute of Biology and Biotechnology, University of Rzeszow, Rzeszow, Poland
| | | | - Anna Koziorowska
- College of Natural Sciences, University of Rzeszow, Rzeszow, Poland.
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14
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Weber J, Schwark L. Epicuticular wax lipid composition of endemic European Betula species in a simulated ontogenetic/diagenetic continuum and its application to chemotaxonomy and paleobotany. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 730:138324. [PMID: 32388385 DOI: 10.1016/j.scitotenv.2020.138324] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Revised: 03/23/2020] [Accepted: 03/28/2020] [Indexed: 06/11/2023]
Abstract
Plants are excellent climate indicators and their macro-remains or pollen accumulating in geological archives serve as recorders of environmental change. In Europe birch trees contribute importantly to Holocene plant successions. They constitute the dwarf species Betula nana and B. humilis, representing colder and two tree birches, B. pubescens and B. pendula indicative of more temperate climate. Birch pollen is highly similar preventing species differentiation. We obtained unambiguous chemotaxonomic differentiation of four European birch species via cuticular wax lipids. Dominating lipid classes in recent epicuticular birch waxes were n-alkanes (nC23 to nC33), n-alcohols and n-alkanoic acids (nC20 to nC32), and long-chain wax ester (nC36 to nC48) differing in amount and distribution. After plant senescence and in geological archives lipids undergo diagenetic alteration modifying the distributions found in recent plants. Long-chain wax esters via hydrolysis release bound n-alcohols and n-fatty acids, adding to their free analogues. Simulated release of bound lipids increased the pool of n-alcohol and n-fatty acids up to 400%. Such modification of primary lipid patterns is unaccounted for in most paleovegetation studies. Proceeding diagenesis, e.g. by decarboxylation will convert these functionalized primary and secondary lipids into their corresponding n-alkanes, the compound class mostly applied in paleoenvironment reconstruction. The simulated n-alkane pattern changed significantly, evidenced by an increase of mid-chain (nC23,nC25) homologues. Release of bound lipids may not only alter molecular but also isotopic composition, which may cause errors in paleoclimate reconstruction. We assessed the potential contribution of secondary (free lipid decarboxylation) and tertiary (bound lipid decarboxylation) wax metabolites and compared the cumulative n-alkane patterns with birch n-alkane distributions reported in the literature. Two statistically different patterns were separated, one dominated by primary, the other by secondary and tertiary formed n-alkanes. This may explain the inconsistency in previous birch wax analysis reported and needs consideration in paleoenvironment reconstruction.
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Affiliation(s)
- Jan Weber
- Department of Organic Geochemistry, Christian-Albrechts-University, Kiel, Germany
| | - Lorenz Schwark
- Department of Organic Geochemistry, Christian-Albrechts-University, Kiel, Germany; Department of Earth Sciences, WA-OIGC, Curtin University, Perth, Australia.
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15
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Tungmunnithum D, Renouard S, Drouet S, Blondeau JP, Hano C. A Critical Cross-Species Comparison of Pollen from Nelumbo nucifera Gaertn. vs. Nymphaea lotus L. for Authentication of Thai Medicinal Herbal Tea. PLANTS (BASEL, SWITZERLAND) 2020; 9:plants9070921. [PMID: 32708113 PMCID: PMC7412456 DOI: 10.3390/plants9070921] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Revised: 07/10/2020] [Accepted: 07/16/2020] [Indexed: 12/28/2022]
Abstract
"Bau Luang" or Nelumbo nucifera Gaertn. is an aquatic medicinal herb that has been used as a component of traditional medicines, medicinal products, and herbal tea for good health, particularly in Asia. The stamen of N. nucifera is an important part of this medicinal plant that is used in the form of dried and/or powdered stamens for herbal tea as well as the main ingredient of some traditional remedies. However, there is another aquatic herb called "Bau Sai" or Nymphaea lotus L. that is distributed in similar locations. Living plants of these two aquatic species may be classified according to their morphology, but the dried and powdered stamens of these two medicinal species are difficult to distinguish. The major reason of adulteration is the higher price of Bau Luang stamen. As a result, various methods of authentication, such as pollen micromorphology evaluation using scanning electron microscopy (SEM) analysis, bioinformatics analysis of two nuclear and plastic DNA markers, phytochemical stamen profiling, and Fourier transform infrared (FTIR) analysis of stamen plant material authentication from Bau Luang and Bau Sai, have been used in this present research in order to avoid some adulteration and/or misuse between the dried stamens of Bau Luang and Bau Sai. These results showed that the micro-morphology of pollen (size of pollen grain, number of apertures, and surface ornamentation) from the SEM analysis, some phytochemical compounds and the FTIR sporopollenin-to-protein ratio signal analysis are potential tools for authentication and identification of these two medicinal plants from their dried-stamen materials. This model of investigation may also be used to distinguish dried plant material from other problematic plant groups.
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Affiliation(s)
- Duangjai Tungmunnithum
- Department of Pharmaceutical Botany, Faculty of Pharmacy, Mahidol University, Bangkok 10400, Thailand
- Laboratoire de Biologie des Ligneux et des Grandes Cultures, INRAE USC1328, University of Orleans, 45067 Orléans CEDEX 2, France;
- Bioactifs et Cosmetiques, CNRS GDR 3711, 45067 Orléans CEDEX 2, France
- Correspondence: (D.T.); (C.H.); Tel.: +66-264-486-96 (D.T.); +33-237-309-753 (C.H.)
| | - Sullivan Renouard
- Institut de Chimie et de Biologie des Membranes et des Nano-objets, CNRS UMR 5248, Bordeaux University, 33600 Pessac, France;
| | - Samantha Drouet
- Laboratoire de Biologie des Ligneux et des Grandes Cultures, INRAE USC1328, University of Orleans, 45067 Orléans CEDEX 2, France;
- Bioactifs et Cosmetiques, CNRS GDR 3711, 45067 Orléans CEDEX 2, France
| | - Jean-Philippe Blondeau
- Conditions Extrêmes et Matériaux: Haute Température et Irradiation (CEMHTI) CNRS UPR3079, 1D Avenue de la Recherche Scientifique, 45071 Orléans, France;
| | - Christophe Hano
- Laboratoire de Biologie des Ligneux et des Grandes Cultures, INRAE USC1328, University of Orleans, 45067 Orléans CEDEX 2, France;
- Bioactifs et Cosmetiques, CNRS GDR 3711, 45067 Orléans CEDEX 2, France
- Correspondence: (D.T.); (C.H.); Tel.: +66-264-486-96 (D.T.); +33-237-309-753 (C.H.)
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16
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Węglińska M, Szostak R, Kita A, Nemś A, Mazurek S. Determination of nutritional parameters of bee pollen by Raman and infrared spectroscopy. Talanta 2020; 212:120790. [DOI: 10.1016/j.talanta.2020.120790] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2019] [Revised: 01/23/2020] [Accepted: 01/27/2020] [Indexed: 01/21/2023]
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17
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Diehn S, Zimmermann B, Tafintseva V, Bağcıoğlu M, Kohler A, Ohlson M, Fjellheim S, Kneipp J. Discrimination of grass pollen of different species by FTIR spectroscopy of individual pollen grains. Anal Bioanal Chem 2020; 412:6459-6474. [PMID: 32350580 PMCID: PMC7442581 DOI: 10.1007/s00216-020-02628-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Revised: 03/11/2020] [Accepted: 03/28/2020] [Indexed: 02/06/2023]
Abstract
Fourier-transform infrared (FTIR) spectroscopy enables the chemical characterization and identification of pollen samples, leading to a wide range of applications, such as paleoecology and allergology. This is of particular interest in the identification of grass (Poaceae) species since they have pollen grains of very similar morphology. Unfortunately, the correct identification of FTIR microspectroscopy spectra of single pollen grains is hindered by strong spectral contributions from Mie scattering. Embedding of pollen samples in paraffin helps to retrieve infrared spectra without scattering artifacts. In this study, pollen samples from 10 different populations of five grass species (Anthoxanthum odoratum, Bromus inermis, Hordeum bulbosum, Lolium perenne, and Poa alpina) were embedded in paraffin, and their single grain spectra were obtained by FTIR microspectroscopy. Spectra were subjected to different preprocessing in order to suppress paraffin influence on spectral classification. It is shown that decomposition by non-negative matrix factorization (NMF) and extended multiplicative signal correction (EMSC) that utilizes a paraffin constituent spectrum, respectively, leads to good success rates for the classification of spectra with respect to species by a partial least square discriminant analysis (PLS-DA) model in full cross-validation for several species. PLS-DA, artificial neural network, and random forest classifiers were applied on the EMSC-corrected spectra using an independent validation to assign spectra from unknown populations to the species. Variation within and between species, together with the differences in classification results, is in agreement with the systematics within the Poaceae family. The results illustrate the great potential of FTIR microspectroscopy for automated classification and identification of grass pollen, possibly together with other, complementary methods for single pollen chemical characterization.
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Affiliation(s)
- Sabrina Diehn
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489, Berlin, Germany
| | - Boris Zimmermann
- Faculty of Science and Technology, Norwegian University of Life Sciences, 1432, Ås, Norway
| | - Valeria Tafintseva
- Faculty of Science and Technology, Norwegian University of Life Sciences, 1432, Ås, Norway
| | - Murat Bağcıoğlu
- Faculty of Science and Technology, Norwegian University of Life Sciences, 1432, Ås, Norway
| | - Achim Kohler
- Faculty of Science and Technology, Norwegian University of Life Sciences, 1432, Ås, Norway
| | - Mikael Ohlson
- Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences, 1432, Ås, Norway
| | - Siri Fjellheim
- Faculty of Biosciences, Norwegian University of Life Sciences, 1432, Ås, Norway
| | - Janina Kneipp
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489, Berlin, Germany.
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18
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Diehn S, Zimmermann B, Tafintseva V, Seifert S, Bağcıoğlu M, Ohlson M, Weidner S, Fjellheim S, Kohler A, Kneipp J. Combining Chemical Information From Grass Pollen in Multimodal Characterization. FRONTIERS IN PLANT SCIENCE 2019; 10:1788. [PMID: 32082348 PMCID: PMC7005252 DOI: 10.3389/fpls.2019.01788] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2019] [Accepted: 12/20/2019] [Indexed: 05/06/2023]
Abstract
The analysis of pollen chemical composition is important to many fields, including agriculture, plant physiology, ecology, allergology, and climate studies. Here, the potential of a combination of different spectroscopic and spectrometric methods regarding the characterization of small biochemical differences between pollen samples was evaluated using multivariate statistical approaches. Pollen samples, collected from three populations of the grass Poa alpina, were analyzed using Fourier-transform infrared (FTIR) spectroscopy, Raman spectroscopy, surface enhanced Raman scattering (SERS), and matrix assisted laser desorption/ionization mass spectrometry (MALDI-TOF MS). The variation in the sample set can be described in a hierarchical framework comprising three populations of the same grass species and four different growth conditions of the parent plants for each of the populations. Therefore, the data set can work here as a model system to evaluate the classification and characterization ability of the different spectroscopic and spectrometric methods. ANOVA Simultaneous Component Analysis (ASCA) was applied to achieve a separation of different sources of variance in the complex sample set. Since the chosen methods and sample preparations probe different parts and/or molecular constituents of the pollen grains, complementary information about the chemical composition of the pollen can be obtained. By using consensus principal component analysis (CPCA), data from the different methods are linked together. This enables an investigation of the underlying global information, since complementary chemical data are combined. The molecular information from four spectroscopies was combined with phenotypical information gathered from the parent plants, thereby helping to potentially link pollen chemistry to other biotic and abiotic parameters.
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Affiliation(s)
- Sabrina Diehn
- Department of Chemistry, Humboldt-Universität zu Berlin, Berlin, Germany
- BAM Federal Institute for Materials Research and Testing, Berlin, Germany
| | - Boris Zimmermann
- Faculty of Science and Technology, Norwegian University of Life Sciences, Ås, Norway
| | - Valeria Tafintseva
- Faculty of Science and Technology, Norwegian University of Life Sciences, Ås, Norway
| | - Stephan Seifert
- Department of Chemistry, Humboldt-Universität zu Berlin, Berlin, Germany
- BAM Federal Institute for Materials Research and Testing, Berlin, Germany
| | - Murat Bağcıoğlu
- Faculty of Science and Technology, Norwegian University of Life Sciences, Ås, Norway
| | - Mikael Ohlson
- Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences, Ås, Norway
| | - Steffen Weidner
- BAM Federal Institute for Materials Research and Testing, Berlin, Germany
| | - Siri Fjellheim
- Faculty of Biosciences, Norwegian University of Life Sciences, Ås, Norway
| | - Achim Kohler
- Faculty of Science and Technology, Norwegian University of Life Sciences, Ås, Norway
- Nofima AS, Ås, Norway
| | - Janina Kneipp
- Department of Chemistry, Humboldt-Universität zu Berlin, Berlin, Germany
- BAM Federal Institute for Materials Research and Testing, Berlin, Germany
- *Correspondence: Janina Kneipp,
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