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Dutta P, Mäkinen K. Absolute and Relative Quantification of Single-Stranded Positive-Sense RNA Viruses from Plant Tissue. Methods Mol Biol 2024; 2724:81-91. [PMID: 37987900 DOI: 10.1007/978-1-0716-3485-1_7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2023]
Abstract
Reverse transcription quantitative PCR (RT-qPCR) allows sensitive and specific measurement of mRNA transcripts from a given sample in a short period of time. Relative and absolute RT-qPCR are two strategies that could be used to quantify mRNA transcripts, based on the goal of the experiment. Here, we describe the protocol for the quantification of plant viral RNA transcripts from an infected sample using both strategies.
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Affiliation(s)
- Pinky Dutta
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
| | - Kristiina Mäkinen
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland.
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2
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Luo M, Gao J, Liu R, Wang S, Wang G. Morphological and anatomical changes during dormancy break of the seeds of Fritillaria taipaiensis. PLANT SIGNALING & BEHAVIOR 2023; 18:2194748. [PMID: 36999406 PMCID: PMC10072057 DOI: 10.1080/15592324.2023.2194748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Revised: 03/05/2023] [Accepted: 03/06/2023] [Indexed: 06/19/2023]
Abstract
Fritillaria taipaiensis P. Y. Li is the most suitable species planted at low altitudes among other species used as Tendrilleaf Fritillary Bulb, whose seeds embracing the morphological and physiological dormancy need to experience a long-dormant time from sowing to germination. In this study, the developmental changes of F. taipaiensis seeds during dormancy period were observed by morphological and anatomical observation, and the cause of long-term dormancy of seeds was discussed from the perspective of embryonic development. The process of embryonic organogenesis was revealed during the dormancy stage by the paraffin section. The effects of testa, endosperm and temperature on dormant seeds were discussed. Furthermore, we found that the mainly dormant reason was caused by the morphological dormancy, which accounted for 86% of seed development time. The differentiation time of the globular or pear-shaped embryo into a short-rod embryo was longer, which was one of the chief reasons for the morphological dormancy and played an important role in embryonic formation. Testa and endosperm with mechanical constraint and inhibitors involved in the dormancy of F. taipaiensis seeds. The seeds of F. taipaiensis, the average ambient temperature of 6-12°C for morphological dormancy and 11-22°C for physiological dormancy, were unsuitable for seed growth. Therefore, we suggested that the dormancy time of F. taipaiensis seeds could be shortened by shortening the development time of the proembryo stage and stratification for the different stages of dormancy.
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Affiliation(s)
- Min Luo
- School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China
| | - Jing Gao
- School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China
| | - Ran Liu
- School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China
| | - ShiQi Wang
- School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China
| | - Guangzhi Wang
- School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China
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3
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Ji W, Yu H, Shangguan Y, Cao J, Chen X, Zhao L, Guo Q, Xu P, Shen X, Xu Z. Transcriptome Profiling of Gossypium anomalum Seedlings Reveals Key Regulators and Metabolic Pathways in Response to Drought Stress. PLANTS (BASEL, SWITZERLAND) 2023; 12:312. [PMID: 36679025 PMCID: PMC9865944 DOI: 10.3390/plants12020312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Revised: 12/26/2022] [Accepted: 01/04/2023] [Indexed: 06/17/2023]
Abstract
Drought stress is a key limiting factor for cotton (Gossypium spp.) growth, production, development, and production worldwide. Some wild diploid cotton species are remarkably tolerant of water deficit and constitute an important reservoir for understanding the molecular mechanisms of Gossypium spp. drought tolerance and improving cultivated upland cotton. Here, we utilized RNA-Seq technology to characterize the leaf transcriptomes of a wild African diploid cotton species, Gossypium anomalum, under drought stress. A total of 12,322 differentially expressed genes (DEGs) were identified after mapping valid clean reads to the reference genome of G. anomalum, of which 1243 were commonly differentially expressed at all stages of drought stress. These genes were significantly enriched for molecular functions Gene Ontology terms related to cytoskeleton, hydrolase activity, cellular redox, and binding. Additionally, a substantial proportion of enriched biological process terms concerned cell or subcellular processes, while most in the cellular components category concerned membrane function and photosynthesis. An enrichment analysis against the Kyoto Encyclopedia of Genes and Genomes showed the top significantly enriched pathways to be photosynthesis-antenna proteins, amino sugar and nucleotide sugar metabolism, starch and sucrose metabolism, MAPK signaling pathway, glutathione metabolism, and plant hormone signal transduction. The DEGs also exhibited interestingly significant enrichments for drought stress-induced tandemly repeated genes involved in iron ion binding, oxidoreductase activity, heme binding, and other biological processes. A large number of genes encoding transcription factors, such as MYB, bHLH, ERF, NAC, WRKY, and bZIP, were identified as playing key roles in acclimatizing to drought stress. These results will provide deeper insights into the molecular mechanisms of drought stress adaptation in Gossypium spp.
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4
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Liu C, Zhang Y, Tan Y, Zhao T, Xu X, Yang H, Li J. CRISPR/Cas9-Mediated SlMYBS2 Mutagenesis Reduces Tomato Resistance to Phytophthora infestans. Int J Mol Sci 2021; 22:11423. [PMID: 34768853 PMCID: PMC8583707 DOI: 10.3390/ijms222111423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Revised: 10/16/2021] [Accepted: 10/20/2021] [Indexed: 11/30/2022] Open
Abstract
Phytophthora infestans (P. infestans) recently caused epidemics of tomato late blight. Our study aimed to identify the function of the SlMYBS2 gene in response to tomato late blight. To further investigate the function of SlMYBS2 in tomato resistance to P. infestans, we studied the effects of SlMYBS2 gene knock out. The SlMYBS2 gene was knocked out by CRISPR-Cas9, and the resulting plants (SlMYBS2 gene knockout, slmybs2-c) showed reduced resistance to P. infestans, accompanied by increases in the number of necrotic cells, lesion sizes, and disease index. Furthermore, after P. infestans infection, the expression levels of pathogenesis-related (PR) genes in slmybs2-c plants were significantly lower than those in wild-type (AC) plants, while the number of necrotic cells and the accumulation of reactive oxygen species (ROS) were higher than those in wild-type plants. Taken together, these results indicate that SlMYBS2 acts as a positive regulator of tomato resistance to P. infestans infection by regulating the ROS level and the expression level of PR genes.
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Affiliation(s)
| | | | | | | | | | - Huanhuan Yang
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China; (C.L.); (Y.Z.); (Y.T.); (T.Z.); (X.X.)
| | - Jingfu Li
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China; (C.L.); (Y.Z.); (Y.T.); (T.Z.); (X.X.)
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5
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Zhang R, Tan S, Zhang B, Hu P, Li L. Cerium-Promoted Ginsenosides Accumulation by Regulating Endogenous Methyl Jasmonate Biosynthesis in Hairy Roots of Panax ginseng. Molecules 2021; 26:5623. [PMID: 34577094 PMCID: PMC8467428 DOI: 10.3390/molecules26185623] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Revised: 09/10/2021] [Accepted: 09/14/2021] [Indexed: 02/07/2023] Open
Abstract
Among rare earth elements, cerium has the unique ability of regulating the growth of plant cells and the biosynthesis of metabolites at different stages of plant development. The signal pathways of Ce3+-mediated ginsenosides biosynthesis in ginseng hairy roots were investigated. At a low concentration, Ce3+ improved the elongation and biomass of hairy roots. The Ce3+-induced accumulation of ginsenosides showed a high correlation with the reactive oxygen species (ROS), as well as the biosynthesis of endogenous methyl jasmonate (MeJA) and ginsenoside key enzyme genes (PgSS, PgSE and PgDDS). At a Ce3+ concentration of 20 mg L-1, the total ginsenoside content was 1.7-fold, and the total ginsenosides yield was 2.7-fold that of the control. Malondialdehyde (MDA) content and the ROS production rate were significantly higher than those of the control. The activity of superoxide dismutase (SOD) was significantly activated within the Ce3+ concentration range of 10 to 30 mg L-1. The activity of catalase (CAT) and peroxidase (POD) strengthened with the increasing concentration of Ce3+ in the range of 20-40 mg L-1. The Ce3+ exposure induced transient production of superoxide anion (O2•-) and hydrogen peroxide (H2O2). Together with the increase in the intracellular MeJA level and enzyme activity for lipoxygenase (LOX), there was an increase in the gene expression level of MeJA biosynthesis including PgLOX, PgAOS and PgJMT. Our results also revealed that Ce3+ did not directly influence PgSS, PgSE and PgDDS activity. We speculated that Ce3+-induced ROS production could enhance the accumulation of ginsenosides in ginseng hairy roots via the direct stimulation of enzyme genes for MeJA biosynthesis. This study demonstrates a potential approach for understanding and improving ginsenoside biosynthesis that is regulated by Ce3+-mediated signal transduction.
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Affiliation(s)
- Ru Zhang
- Hunan Institute of Engineering, College of Materials and Chemical Engineering, Xiangtan 411104, China; (S.T.); (B.Z.); (P.H.); (L.L.)
- Hunan Provincial Key Laboratory of Environmental Catalysis and Waste Recycling, Hunan Institute of Engineering, Xiangtan 411104, China
- Hunan International Joint Laboratory of Animal Intestinal Ecology and Health, College of Life Sciences, Hunan Normal University, Changsha 410081, China
| | - Shiquan Tan
- Hunan Institute of Engineering, College of Materials and Chemical Engineering, Xiangtan 411104, China; (S.T.); (B.Z.); (P.H.); (L.L.)
| | - Bianling Zhang
- Hunan Institute of Engineering, College of Materials and Chemical Engineering, Xiangtan 411104, China; (S.T.); (B.Z.); (P.H.); (L.L.)
| | - Pengcheng Hu
- Hunan Institute of Engineering, College of Materials and Chemical Engineering, Xiangtan 411104, China; (S.T.); (B.Z.); (P.H.); (L.L.)
| | - Ling Li
- Hunan Institute of Engineering, College of Materials and Chemical Engineering, Xiangtan 411104, China; (S.T.); (B.Z.); (P.H.); (L.L.)
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6
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Barna D, Kisvarga S, Kovács S, Csatári G, Tóth IO, Fári MG, Alshaal T, Bákonyi N. Raw and Fermented Alfalfa Brown Juice Induces Changes in the Germination and Development of French Marigold ( Tagetes patula L.) Plants. PLANTS (BASEL, SWITZERLAND) 2021; 10:1076. [PMID: 34071906 PMCID: PMC8228020 DOI: 10.3390/plants10061076] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Accepted: 05/26/2021] [Indexed: 01/17/2023]
Abstract
Organic and ecological farming programs require new and efficient biostimulants with beneficial properties for the sustainable and safe production of seedlings and ornamental plants. We examined the effect of non-fermented and lacto-fermented alfalfa brown juice (BJ) on seed germination and the vegetative, physiological, and anatomical properties of French marigold (Tagetes patula L. 'Csemő') plants which were treated with 0.5-10% fermented and non-fermented BJ, with tap water applied as a control. Applying 0.5% fermented BJ significantly improved seed germination compared with non-fermented BJ, resulting in an increase of 9.6, 11.2, 10.9, and 41.7% in the final germination percent, germination rate index, germination index, and vigor index, respectively. In addition, it increased the root and shoot length by 7.9 and 16.1%, respectively, root and shoot dry mass by 20 and 47.6%, respectively, and the number of leaves by 28.8% compared to the control. Furthermore, an increase in contents of water-soluble phenol, chlorophyll a and b, and carotenoid was reported upon the application of 0.5% fermented BJ, while peroxidase activity decreased. Our results prove that alfalfa BJ can be enrolled as a biostimulant as part of the circular farming approach which supports the sustainable horticultural practice.
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Affiliation(s)
- Döme Barna
- Department of Applied Plant Biology, Institute of Crop Sciences, University of Debrecen, Böszörményi Street 138, 4032 Debrecen, Hungary; (S.K.); (G.C.); (I.O.T.); (M.G.F.); (T.A.); (N.B.)
| | - Szilvia Kisvarga
- Research Institute for Fruit Growing and Ornamentals, National Agricultural Research and Innovation Center (NARIC) Szent-Györgyi Street 4, 2100 Gödöllő, Hungary;
| | - Szilvia Kovács
- Department of Applied Plant Biology, Institute of Crop Sciences, University of Debrecen, Böszörményi Street 138, 4032 Debrecen, Hungary; (S.K.); (G.C.); (I.O.T.); (M.G.F.); (T.A.); (N.B.)
| | - Gábor Csatári
- Department of Applied Plant Biology, Institute of Crop Sciences, University of Debrecen, Böszörményi Street 138, 4032 Debrecen, Hungary; (S.K.); (G.C.); (I.O.T.); (M.G.F.); (T.A.); (N.B.)
| | - Ibolya O. Tóth
- Department of Applied Plant Biology, Institute of Crop Sciences, University of Debrecen, Böszörményi Street 138, 4032 Debrecen, Hungary; (S.K.); (G.C.); (I.O.T.); (M.G.F.); (T.A.); (N.B.)
| | - Miklós Gábor Fári
- Department of Applied Plant Biology, Institute of Crop Sciences, University of Debrecen, Böszörményi Street 138, 4032 Debrecen, Hungary; (S.K.); (G.C.); (I.O.T.); (M.G.F.); (T.A.); (N.B.)
| | - Tarek Alshaal
- Department of Applied Plant Biology, Institute of Crop Sciences, University of Debrecen, Böszörményi Street 138, 4032 Debrecen, Hungary; (S.K.); (G.C.); (I.O.T.); (M.G.F.); (T.A.); (N.B.)
- Soil and Water Department, Faculty of Agriculture, Kafrelsheikh University, Kafr El-Sheikh 33516, Egypt
| | - Nóra Bákonyi
- Department of Applied Plant Biology, Institute of Crop Sciences, University of Debrecen, Böszörményi Street 138, 4032 Debrecen, Hungary; (S.K.); (G.C.); (I.O.T.); (M.G.F.); (T.A.); (N.B.)
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7
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Tang Y, Li H, Guan Y, Li S, Xun C, Dong Y, Huo R, Guo Y, Bao X, Pei E, Shen Q, Zhou H, Liao J. Genome-Wide Identification of the Physic Nut WUSCHEL-Related Homeobox Gene Family and Functional Analysis of the Abiotic Stress Responsive Gene JcWOX5. Front Genet 2020; 11:670. [PMID: 32655627 PMCID: PMC7325900 DOI: 10.3389/fgene.2020.00670] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2020] [Accepted: 06/02/2020] [Indexed: 11/29/2022] Open
Abstract
Plant-specific WOX transcription factors have important regulatory functions in plant development and response to abiotic stress. However, the identification and functional analysis of members of the WOX family have rarely been reported in the physic nut plant until now. Our research identified 12 WOX genes (JcWOXs) in physic nut, and these genes were divided into three groups corresponding to the ancient clade, WUS clade, and intermediate clade. Expression analysis based on RNA-seq and qRT-PCR showed that most of the JcWOX genes were expressed in at least one of the tissues tested, whereas five genes were identified as being highly responsive to drought and salt stresses. Subcellular localization analysis in Arabidopsis protoplast cells showed that JcWOX5 encoded a nuclear-localized protein. JcWOX5-overexpression plants increased sensitivity to drought stress, and transgenic plants suggested a lower proline content and CAT activity, higher relative electrolyte leakage, higher MDA content, and higher rate of water loss under drought conditions. Expression of some stress-related genes was obviously lower in the transformed rice lines as compared to their expression in wild-type rice lines under drought stress. Further data on JcWOX5-overexpressing plants reducing drought tolerance verified the potential role of JcWOX genes in responsive to abiotic stress. Collectively, the study provides a foundation for further functional analysis of JcWOX genes and the improvement of physic nut crops.
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Affiliation(s)
- Yuehui Tang
- Key Laboratory of Plant Genetics and Molecular Breeding, Zhoukou Normal University, Zhoukou, China
- Henan Key Laboratory of Crop Molecular Breeding and Bioreactor, Zhoukou, China
| | - Han Li
- Key Laboratory of Plant Genetics and Molecular Breeding, Zhoukou Normal University, Zhoukou, China
| | - Yaxin Guan
- Key Laboratory of Plant Genetics and Molecular Breeding, Zhoukou Normal University, Zhoukou, China
| | - Shen Li
- Key Laboratory of Plant Genetics and Molecular Breeding, Zhoukou Normal University, Zhoukou, China
| | - Chunfei Xun
- Key Laboratory of Plant Genetics and Molecular Breeding, Zhoukou Normal University, Zhoukou, China
| | - Yanyang Dong
- Key Laboratory of Plant Genetics and Molecular Breeding, Zhoukou Normal University, Zhoukou, China
| | - Rui Huo
- Key Laboratory of Plant Genetics and Molecular Breeding, Zhoukou Normal University, Zhoukou, China
| | - Yuxi Guo
- Key Laboratory of Plant Genetics and Molecular Breeding, Zhoukou Normal University, Zhoukou, China
| | - Xinxin Bao
- School of Journalism and Communication, Zhoukou Normal University, Zhoukou, China
| | - Enqing Pei
- Key Laboratory of Plant Genetics and Molecular Breeding, Zhoukou Normal University, Zhoukou, China
| | - Qianmiao Shen
- Key Laboratory of Plant Genetics and Molecular Breeding, Zhoukou Normal University, Zhoukou, China
| | - He Zhou
- Key Laboratory of Plant Genetics and Molecular Breeding, Zhoukou Normal University, Zhoukou, China
| | - Jingjing Liao
- Key Laboratory of Plant Genetics and Molecular Breeding, Zhoukou Normal University, Zhoukou, China
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Niu X, Luo T, Zhao H, Su Y, Ji W, Li H. Identification of wheat DREB genes and functional characterization of TaDREB3 in response to abiotic stresses. Gene 2020; 740:144514. [PMID: 32112985 DOI: 10.1016/j.gene.2020.144514] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2019] [Revised: 02/08/2020] [Accepted: 02/25/2020] [Indexed: 01/21/2023]
Abstract
As an important transcription factor family, DREB transcription factors play important roles in response to abiotic stresses. In this study, we identified wheat DREB genes at genome-level, and characterized the functions of TaDREB genes. Totally, there are 210 TaDREB genes, which can be divided into 6 subgroups. Some of these genes display tissue-specific expression patterns. Among them, the expression of three TaDREB3 homoeologous genes is induced by abiotic stresses. Meanwhile, as alternatively spliced genes, they generate three isoforms respectively. Transcripts I and II encode DREB proteins, while transcript III does not generate DREB proteins. Transgenic Arabidopsis over-expressing TaDREB3-AI displayed enhanced resistance to drought, salt and heat stresses. The physical indexes and the expression of stress-related genes further verified the functions in response to abiotic stresses. Our results lay a foundation for further study of wheat DREB genes. Especially, our findings indicate that TaDREB3 genes can be used for crop genetic improvement.
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Affiliation(s)
- Xin Niu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling 712100, China.
| | - Tengli Luo
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling 712100, China.
| | - Hongyan Zhao
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling 712100, China.
| | - Yali Su
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling 712100, China.
| | - Wanquan Ji
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling 712100, China.
| | - Haifeng Li
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling 712100, China; Xinjiang Agricultural Vocational Technical College, Changji, China.
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9
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Transcription Factor GarWRKY5 Is Involved in Salt Stress Response in Diploid Cotton Species ( Gossypium aridum L.). Int J Mol Sci 2019; 20:ijms20215244. [PMID: 31652670 PMCID: PMC6862181 DOI: 10.3390/ijms20215244] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2019] [Revised: 10/15/2019] [Accepted: 10/20/2019] [Indexed: 12/12/2022] Open
Abstract
Cotton is one of the most economically important crops in the world, and it is exposed to various abiotic stresses during its lifecycle, especially salt stress. However, the molecular mechanisms underlying cotton tolerance to salt stress are still not fully understood due to the complex nature of salt response. Therefore, identification of salt stress tolerance-related functional genes will help us understand key components involved in stress response and provide valuable genes for improving salt stress tolerance via genetic engineering in cotton. In the present study, virus-induced gene silencing of GhWRKY5 in cotton showed enhanced salt sensitivity compared to wild-type plants under salt stress. Overexpression of GarWRKY5 in Arabidopsis positively regulated salt tolerance at the stages of seed germination and vegetative growth. Additionally, GarWRKY5-overexpressing plants exhibited higher activities of superoxide dismutase (SOD) and peroxidase (POD) under salt stress. The transcriptome sequencing analysis of transgenic Arabidopsis plants and wild-type plants revealed that there was enriched coexpression of genes involved in reactive oxygen species (ROS) scavenging (including glutamine S-transferases (GSTs) and SODs) and altered response to jasmonic acid and salicylic acid in the GarWRKY5-OE lines. GarWRKY5 is involved in salt stress response by the jasmonic acid- or salicylic acid-mediated signaling pathway based on overexpression of GarWRKY5 in Arabidopsis and virus-induced gene silencing of GarWRKY5 in cotton.
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10
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Zhang X, Ding X, Ji Y, Wang S, Chen Y, Luo J, Shen Y, Peng L. Measurement of metabolite variations and analysis of related gene expression in Chinese liquorice (Glycyrrhiza uralensis) plants under UV-B irradiation. Sci Rep 2018; 8:6144. [PMID: 29670187 PMCID: PMC5906665 DOI: 10.1038/s41598-018-24284-4] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2017] [Accepted: 03/28/2018] [Indexed: 12/13/2022] Open
Abstract
Plants respond to UV-B irradiation (280–315 nm wavelength) via elaborate metabolic regulatory mechanisms that help them adapt to this stress. To investigate the metabolic response of the medicinal herb Chinese liquorice (Glycyrrhiza uralensis) to UV-B irradiation, we performed liquid chromatography tandem mass spectrometry (LC-MS/MS)-based metabolomic analysis, combined with analysis of differentially expressed genes in the leaves of plants exposed to UV-B irradiation at various time points. Fifty-four metabolites, primarily amino acids and flavonoids, exhibited changes in levels after the UV-B treatment. The amino acid metabolism was altered by UV-B irradiation: the Asp family pathway was activated and closely correlated to Glu. Some amino acids appeared to be converted into antioxidants such as γ-aminobutyric acid and glutathione. Hierarchical clustering analysis revealed that various flavonoids with characteristic groups were induced by UV-B. In particular, the levels of some ortho-dihydroxylated B-ring flavonoids, which might function as scavengers of reactive oxygen species, increased in response to UV-B treatment. In general, unigenes encoding key enzymes involved in amino acid metabolism and flavonoid biosynthesis were upregulated by UV-B irradiation. These findings lay the foundation for further analysis of the mechanism underlying the response of G. uralensis to UV-B irradiation.
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Affiliation(s)
- Xiao Zhang
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.,National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, 100083, China
| | - Xiaoli Ding
- Key Lab of Ministry of Education for Protection and Utilization of Special Biological Resources in Western China, Ningxia University, Yinchuan, Ningxia, 750021, China.,School of Life Science, Ningxia University, Yinchuan, Ningxia, 750021, China
| | - Yaxi Ji
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.,National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, 100083, China
| | - Shouchuang Wang
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, Hubei, 430070, China
| | - Yingying Chen
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.,National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, 100083, China
| | - Jie Luo
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, Hubei, 430070, China
| | - Yingbai Shen
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China. .,National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, 100083, China.
| | - Li Peng
- Key Lab of Ministry of Education for Protection and Utilization of Special Biological Resources in Western China, Ningxia University, Yinchuan, Ningxia, 750021, China. .,School of Life Science, Ningxia University, Yinchuan, Ningxia, 750021, China.
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11
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Kiranmai K, Lokanadha Rao G, Pandurangaiah M, Nareshkumar A, Amaranatha Reddy V, Lokesh U, Venkatesh B, Anthony Johnson AM, Sudhakar C. A Novel WRKY Transcription Factor, MuWRKY3 ( Macrotyloma uniflorum Lam. Verdc.) Enhances Drought Stress Tolerance in Transgenic Groundnut ( Arachis hypogaea L.) Plants. FRONTIERS IN PLANT SCIENCE 2018; 9:346. [PMID: 29616059 PMCID: PMC5864901 DOI: 10.3389/fpls.2018.00346] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2017] [Accepted: 03/01/2018] [Indexed: 05/19/2023]
Abstract
Drought stress has adverse effects on growth, water relations, photosynthesis and yield of groundnut. WRKY transcription factors (TFs) are the plant-specific TFs which regulate several down-stream stress-responsive genes and play an essential role in plant biotic and abiotic stress responses. We found that WRKY3 gene is highly up-regulated under drought stress conditions and therefore isolated a new WRKY3TF gene from a drought-adapted horsegram (Macrotyloma uniflorum Lam. Verdc.). Conserved domain studies revealed that protein encoded by this gene contains highly conserved regions of two WRKY domains and two C2H2 zinc-finger motifs. The fusion protein localization studies of transient MuWRKY3-YFP revealed its nuclear localization. Overexpression of MuWRKY3 TF gene in groundnut (Arachis hypogaea L.) showed increased tolerance to drought stress compared to wild-type (WT) plants. MuWRKY3 groundnut transgenics displayed lesser and delayed wilting symptoms than WT plants after 10-days of drought stress imposition. The transgenic groundnut plants expressing MuWRKY3 showed less accumulation of malondialdehyde, hydrogen peroxide (H2O2), and superoxide anion (O2∙-), accompanied by more free proline, total soluble sugar content, and activities of antioxidant enzymes than WT plants under drought stress. Moreover, a series of stress-related LEA, HSP, MIPS, APX, SOD, and CAT genes found up-regulated in the transgenic groundnut plants. The study demonstrates that nuclear-localized MuWRKY3 TF regulates the expression of stress-responsive genes and the activity of ROS scavenging enzymes which results in improved drought tolerance in groundnut. We conclude that MuWRKY3 may serve as a new putative candidate gene for the improvement of stress resistance in plants.
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Affiliation(s)
- Kurnool Kiranmai
- Plant Molecular Biology Unit, Department of Botany, Sri Krishnadevaraya University, Anantapur, India
| | - Gunupuru Lokanadha Rao
- Department of Plant, Food, and Environmental Sciences, Dalhousie University, Truro, NS, Canada
| | - Merum Pandurangaiah
- Plant Molecular Biology Unit, Department of Botany, Sri Krishnadevaraya University, Anantapur, India
| | - Ambekar Nareshkumar
- Plant Molecular Biology Unit, Department of Botany, Sri Krishnadevaraya University, Anantapur, India
| | | | - Uppala Lokesh
- Plant Molecular Biology Unit, Department of Botany, Sri Krishnadevaraya University, Anantapur, India
| | - Boya Venkatesh
- Plant Molecular Biology Unit, Department of Botany, Sri Krishnadevaraya University, Anantapur, India
| | - A. M. Anthony Johnson
- Plant Molecular Biology Unit, Department of Botany, Sri Krishnadevaraya University, Anantapur, India
| | - Chinta Sudhakar
- Plant Molecular Biology Unit, Department of Botany, Sri Krishnadevaraya University, Anantapur, India
- *Correspondence: Chinta Sudhakar,
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Liu S, Wang S, Liu M, Yang F, Zhang H, Liu S, Wang Q, Zhao Y. De novo sequencing and analysis of the transcriptome of Panax ginseng in the leaf-expansion period. Mol Med Rep 2016; 14:1404-12. [PMID: 27278773 DOI: 10.3892/mmr.2016.5376] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2015] [Accepted: 05/09/2016] [Indexed: 11/06/2022] Open
Abstract
Panax ginseng, a traditional Chinese medicine, is used worldwide for its variety of health benefits and its treatment efficacy. However, it is difficult to cultivate due to its vulnerability to environmental stresses. The present study provided the first report, to the best of our knowledge, of transcriptome analysis of ginseng at the leaf‑expansion stage. Using the Illumina sequencing platform, >40,000,000 high‑quality paired‑end reads were obtained and assembled into 100,533 unique sequences. When the sequences were searched against the publicly available National Center for Biotechnology Information protein database using The Basic Local Alignment Search Tool, 61,599 sequences exhibited similarity to known proteins. Functional annotation and classification, including use of the Gene Ontology, Clusters of Orthologous Groups, and Kyoto Encyclopedia of Genes and Genomes databases, revealed that the activated genes in ginseng were predominantly ribonuclease‑like storage genes, environmental stress genes, pathogenesis-related genes and other antioxidant genes. A number of candidate genes in environmental stress‑associated pathways were also identified. These novel data provide useful information on the growth and development stages of ginseng, and serve as an important public information platform for further understanding of the molecular mechanisms and functional genomics of ginseng.
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Affiliation(s)
- Shichao Liu
- Center of Chinese Medicine and Bio‑Engineering Research, Changchun University of Chinese Medicine, Changchun, Jilin 130000, P.R. China
| | - Siming Wang
- Center of Chinese Medicine and Bio‑Engineering Research, Changchun University of Chinese Medicine, Changchun, Jilin 130000, P.R. China
| | - Meichen Liu
- Center of Chinese Medicine and Bio‑Engineering Research, Changchun University of Chinese Medicine, Changchun, Jilin 130000, P.R. China
| | - Fei Yang
- Department of Bio‑Pharmaceutical Development, GeneScience Pharmaceuticals Co., Ltd., Changchun, Jilin 130000, P.R. China
| | - Hui Zhang
- Center of Chinese Medicine and Bio‑Engineering Research, Changchun University of Chinese Medicine, Changchun, Jilin 130000, P.R. China
| | - Shiyang Liu
- College of Life Sciences, Jilin University, Changchun, Jilin 130000, P.R. China
| | - Qun Wang
- Center of Chinese Medicine and Bio‑Engineering Research, Changchun University of Chinese Medicine, Changchun, Jilin 130000, P.R. China
| | - Yu Zhao
- Center of Chinese Medicine and Bio‑Engineering Research, Changchun University of Chinese Medicine, Changchun, Jilin 130000, P.R. China
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Chen L, Teng H, Fang T, Xiao J. Agrimonolide from Agrimonia pilosa suppresses inflammatory responses through down-regulation of COX-2/iNOS and inactivation of NF-κB in lipopolysaccharide-stimulated macrophages. PHYTOMEDICINE 2016; 23:846-55. [PMID: 27288920 DOI: 10.1016/j.phymed.2016.03.016] [Citation(s) in RCA: 79] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 12/30/2015] [Revised: 03/22/2016] [Accepted: 03/30/2016] [Indexed: 02/05/2023]
Abstract
BACKGROUND Agrimonolide from Agrimonia pilosa showed a strong anti-inflammatory activity, and the present study aims to reveal potential mechanisms on molecular level explaining its anti-inflammatory effect. HYPOTHESIS/PURPOSE To investigate the mechanism of anti-inflammatory activity of agrimonolide. STUDY DESIGN Anti-inflammatory activity of agrimonolide in cells was applied. METHODS Anti-inflammatory activity of agrimonolide isolated from Agrimonia pilosa was evaluated using lipopolysaccharide (LPS) stimulated RAW 264.7 cell models. The productions of IL-1β, IL-6, TNF-α and NO were determined by ELISA and nitrite analysis, respectively. The expressions of iNOS and COX-2 were measured by western blotting and RT-PCR analysis. RESULTS The pre-treatment with agrimonolide significantly reduced the levels of pro-inflammatory cytokines (IL-1β, IL-6, and TNF-α), as well as attenuated the expression of iNOS and COX-2 in LPS-stimulated macrophages. Furthermore, agrimonolide inhibited the activation of JNK and p38 MAPKs and decreased the activation of JAK-STAT and NF-κB in LPS-stimulated macrophages. CONCLUSION The present study suggested that agrimonolide exerted anti- inflammatory activity, at least in part, via suppressing LPS-induced activation of JAK-STATs and p38 MAPKs signaling pathway.
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Affiliation(s)
- Lei Chen
- College of Food Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China
| | - Hui Teng
- College of Food Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China
| | - Ting Fang
- College of Food Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China.
| | - Jianbo Xiao
- Institute of Chinese Medical Sciences, State Key Laboratory of Quality Research in Chinese Medicine, University of Macau, Avenida da Universidade, Taipa, Macau.
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Liu XQ, Liu CY, Guo Q, Zhang M, Cao BN, Xiang ZH, Zhao AC. Mulberry Transcription Factor MnDREB4A Confers Tolerance to Multiple Abiotic Stresses in Transgenic Tobacco. PLoS One 2015; 10:e0145619. [PMID: 26695076 PMCID: PMC4687919 DOI: 10.1371/journal.pone.0145619] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2015] [Accepted: 12/07/2015] [Indexed: 12/13/2022] Open
Abstract
The dehydration responsive element binding (DREB) transcription factors have been reported to be involved in stress responses. Most studies have focused on DREB genes in subgroups A-1 and A-2 in herbaceous plants, but there have been few reports on the functions of DREBs from the A-3-A-6 subgroups and in woody plants. Moreover, mulberry trees are ecologically and economically important perennial woody plants, but there has been little research on its stress physiology, biochemistry and molecular biology. In this study, a DREB gene from the mulberry tree, designated as MnDREB4A, classified into the A-4 subgroup by our previous study, was selected for further characterization. Our results showed that the MnDREB4A protein was localized to the nucleus where it activated transcription. The promoter of MnDREB4A can direct prominent expression downstream of the β-glucuronidase (GUS) gene under heat, cold, drought and salt stress, and GUS staining was deepest after 12 h of stress treatment. The MnDREB4A-overexpression transgenic tobacco showed the improved growth phenotype under untreated conditions, such as greener leaves, longer roots, and lower water loss and senescence rates. Overexpression of MnDREB4A in tobacco can significantly enhance tolerance to heat, cold, drought, and salt stresses in transgenic plants. The leaf discs and seedlings of transgenic plants reduced leaf wilting and senescence rates compared to the wild type plants under the different stress conditions. Further investigation showed that transgenic plants also had higher water contents and proline contents, and lower malondialdehyde contents under untreated condition and stress conditions. Our results indicate that the MnDREB4A protein plays an important role in plant stress tolerance.
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Affiliation(s)
- Xue-Qin Liu
- State Key Laboratory of Silkworm Genome Biology, Key Laboratory for Sericulture Functional Genomics and Biotechnology of Agricultural Ministry, Southwest University, Chongqing, 400716, China
| | - Chang-Ying Liu
- State Key Laboratory of Silkworm Genome Biology, Key Laboratory for Sericulture Functional Genomics and Biotechnology of Agricultural Ministry, Southwest University, Chongqing, 400716, China
| | - Qing Guo
- State Key Laboratory of Silkworm Genome Biology, Key Laboratory for Sericulture Functional Genomics and Biotechnology of Agricultural Ministry, Southwest University, Chongqing, 400716, China
| | - Meng Zhang
- State Key Laboratory of Silkworm Genome Biology, Key Laboratory for Sericulture Functional Genomics and Biotechnology of Agricultural Ministry, Southwest University, Chongqing, 400716, China
| | - Bo-Ning Cao
- State Key Laboratory of Silkworm Genome Biology, Key Laboratory for Sericulture Functional Genomics and Biotechnology of Agricultural Ministry, Southwest University, Chongqing, 400716, China
| | - Zhong-Huai Xiang
- State Key Laboratory of Silkworm Genome Biology, Key Laboratory for Sericulture Functional Genomics and Biotechnology of Agricultural Ministry, Southwest University, Chongqing, 400716, China
| | - Ai-Chun Zhao
- State Key Laboratory of Silkworm Genome Biology, Key Laboratory for Sericulture Functional Genomics and Biotechnology of Agricultural Ministry, Southwest University, Chongqing, 400716, China
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Li JB, Luan YS, Liu Z. Overexpression of SpWRKY1 promotes resistance to Phytophthora nicotianae and tolerance to salt and drought stress in transgenic tobacco. PHYSIOLOGIA PLANTARUM 2015; 155:248-66. [PMID: 25496091 DOI: 10.1111/ppl.12315] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2014] [Revised: 12/01/2014] [Accepted: 12/06/2014] [Indexed: 05/03/2023]
Abstract
WRKY transcription factors are key regulatory components of plant responses to biotic and abiotic stresses. SpWRKY1, a pathogen-induced WRKY gene, was isolated from tomato (Solanum pimpinellifolium L3708) using in silico cloning and reverse transcriptase-polymerase chain reaction (RT-PCR) methods. SpWRKY1 expression was significantly induced following oomycete pathogen infection and treatment with salt, drought, salicylic acid (SA), methyl jasmonate (MeJA) and abscisic acid (ABA). Overexpression of SpWRKY1 in tobacco conferred greater resistance to Phytophthora nicotianae infection, as evidenced by lower malondialdehyde (MDA) content; relative electrolyte leakage (REL); higher chlorophyll content; and higher peroxidase (POD, EC 1.11.1.7), superoxide dismutase (SOD, EC 1.15.1.1) and phenylalanine ammonia-lyase (PAL, EC 4.3.1.24) activities. This resistance was also coupled with enhanced expression of SA- and JA-associated genes (NtPR1, NtPR2, NtPR4, NtPR5 and NtPDF1.2), as well as of various defense-related genes (NtPOD, NtSOD and NtPAL). In addition, transgenic tobacco plants also displayed an enhanced tolerance to salt and drought stresses, mainly demonstrated by the transgenic lines exhibiting lower accumulation of MDA content and higher POD (EC 1.11.1.7), SOD (EC 1.15.1.1) activities, chlorophyll content, photosynthetic rate and stomatal conductance, accompanied by enhanced expression of defense-related genes (NtPOD, NtSOD, NtLEA5, NtP5CS and NtNCED1) under salt and drought stresses. Overall, these findings suggest that SpWRKY1 acts as a positive regulator involved in tobacco defense responses to biotic and abiotic stresses.
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Affiliation(s)
- Jing-bin Li
- School of Life Science and Biotechnology, Dalian University of Technology, Dalian, 116024, China
| | - Yu-shi Luan
- School of Life Science and Biotechnology, Dalian University of Technology, Dalian, 116024, China
| | - Zhen Liu
- School of Life Science and Biotechnology, Dalian University of Technology, Dalian, 116024, China
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Rahimi S, Kim YJ, Devi BSR, Oh JY, Kim SY, Kwon WS, Yang DC. Sodium nitroprusside enhances the elicitation power of methyl jasmonate for ginsenoside production in Panax ginseng roots. RESEARCH ON CHEMICAL INTERMEDIATES 2015. [DOI: 10.1007/s11164-015-2188-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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17
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Zhao TT, Zhang J, Liang LS, Ma QH, Chen X, Zong JW, Wang GX. Expression and Functional Analysis of WRKY Transcription Factors in Chinese Wild Hazel, Corylus heterophylla Fisch. PLoS One 2015; 10:e0135315. [PMID: 26270529 PMCID: PMC4536078 DOI: 10.1371/journal.pone.0135315] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2015] [Accepted: 07/20/2015] [Indexed: 12/03/2022] Open
Abstract
Plant WRKY transcription factors are known to regulate various biotic and abiotic stress responses. In this study we identified a total of 30 putative WRKY unigenes in a transcriptome dataset of the Chinese wild Hazel, Corylus heterophylla, a species that is noted for its cold tolerance. Thirteen full-length of these ChWRKY genes were cloned and found to encode complete protein sequences, and they were divided into three groups, based on the number of WRKY domains and the pattern of zinc finger structures. Representatives of each of the groups, Unigene25835 (group I), Unigene37641 (group II) and Unigene20441 (group III), were transiently expressed as fusion proteins with yellow fluorescent fusion protein in Nicotiana benthamiana, where they were observed to accumulate in the nucleus, in accordance with their predicted roles as transcriptional activators. An analysis of the expression patterns of all 30 WRKY genes revealed differences in transcript abundance profiles following exposure to cold, drought and high salinity conditions. Among the stress-inducible genes, 23 were up-regulated by all three abiotic stresses and the WRKY genes collectively exhibited four different patterns of expression in flower buds during the overwintering period from November to April. The organ/tissue related expression analysis showed that 18 WRKY genes were highly expressed in stem but only 2 (Unigene9262 and Unigene43101) were greatest in male anthotaxies. The expression of Unigene37641, a member of the group II WRKY genes, was substantially up-regulated by cold, drought and salinity treatments, and its overexpression in Arabidopsis thaliana resulted in better seedling growth, compared with wild type plants, under cold treatment conditions. The transgenic lines also had exhibited higher soluble protein content, superoxide dismutase and peroxidase activiety and lower levels of malondialdehyde, which collectively suggets that Unigene37641 expression promotes cold tolerance.
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Affiliation(s)
- Tian-Tian Zhao
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Jin Zhang
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Li-Song Liang
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Qing-Hua Ma
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Xin Chen
- Shandong Institute of Pomology, Shandong Provincial Key Laboratory of Fruit Tree Biotechnology Breeding, Tai’an, Shandong, China
| | - Jian-Wei Zong
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Gui-Xi Wang
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
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Rahimi S, Kim YJ, Yang DC. Production of ginseng saponins: elicitation strategy and signal transductions. Appl Microbiol Biotechnol 2015; 99:6987-96. [DOI: 10.1007/s00253-015-6806-8] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2015] [Revised: 06/25/2015] [Accepted: 06/29/2015] [Indexed: 01/11/2023]
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Lee BD, Dutta S, Ryu H, Yoo SJ, Suh DS, Park K. Induction of systemic resistance in Panax ginseng against Phytophthora cactorum by native Bacillus amyloliquefaciens HK34. J Ginseng Res 2015; 39:213-20. [PMID: 26199552 PMCID: PMC4506372 DOI: 10.1016/j.jgr.2014.12.002] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2014] [Accepted: 12/18/2014] [Indexed: 12/05/2022] Open
Abstract
BACKGROUND Korean ginseng (Panax ginseng Meyer) is a perennial herb prone to various root diseases, with Phytophthora cactorum being considered one of the most dreaded pathogens. P. cactorum causes foliar blight and root rot. Although chemical pesticides are available for disease control, attention has been shifted to viable, eco-friendly, and cost-effective biological means such as plant growth-promoting rhizobacteria (PGPR) for control of diseases. METHODS Native Bacillus amyloliquefaciens strain HK34 was isolated from wild ginseng and assessed as a biological control agent for ginseng. Leaves from plants treated with HK34 were analyzed for induced systemic resistance (ISR) against P. cactorum in square plate assay. Treated plants were verified for differential expression of defense-related marker genes using quantitative reverse transcription polymerase chain reaction. RESULTS A total of 78 native rhizosphere bacilli from wild P. ginseng were isolated. One of the root-associated bacteria identified as B. amyloliquefaciens strain HK34 effectively induced resistance against P. cactorum when applied as soil drench once (99.1% disease control) and as a priming treatment two times in the early stages (83.9% disease control). A similar result was observed in the leaf samples of plants under field conditions, where the percentage of disease control was 85.6%. Significant upregulation of the genes PgPR10, PgPR5, and PgCAT in the leaves of plants treated with HK34 was observed against P. cactorum compared with untreated controls and only pathogen-treated plants. CONCLUSION The results of this study indicate HK34 as a potential biocontrol agent eliciting ISR in ginseng against P. cactorum.
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Affiliation(s)
- Byung Dae Lee
- Department of Genetic Engineering, Sungkyunkwan University, Suwon, Korea
| | - Swarnalee Dutta
- Division of Agricultural Microbiology, National Academy of Agricultural Sciences, Rural Development Administration, Wanju, Korea
| | - Hojin Ryu
- Department of Biology, Chungbuk National University, Cheongju, Chungbuk, Korea
| | - Sung-Je Yoo
- Division of Agricultural Microbiology, National Academy of Agricultural Sciences, Rural Development Administration, Wanju, Korea
| | - Dong-Sang Suh
- Department of Genetic Engineering, Sungkyunkwan University, Suwon, Korea
| | - Kyungseok Park
- Division of Agricultural Microbiology, National Academy of Agricultural Sciences, Rural Development Administration, Wanju, Korea
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Analysis of the Thinopyrum elongatum Transcriptome under Water Deficit Stress. Int J Genomics 2015; 2015:265791. [PMID: 25722968 PMCID: PMC4334436 DOI: 10.1155/2015/265791] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2014] [Revised: 01/13/2015] [Accepted: 01/20/2015] [Indexed: 12/01/2022] Open
Abstract
The transcriptome of Thinopyrum elongatum under water deficit stress was analyzed using RNA-Seq technology. The results showed that genes involved in processes of amplification of stress signaling, reductions in oxidative damage, creation of protectants, and roots development were expressed differently, which played an important role in the response to water deficit. The Th. elongatum transcriptome research highlights the activation of a large set of water deficit-related genes in this species and provides a valuable resource for future functional analysis of candidate genes in the water deficit stress response.
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Transcriptome profiling and comparative analysis of Panax ginseng adventitious roots. J Ginseng Res 2014; 38:278-88. [PMID: 25379008 PMCID: PMC4213845 DOI: 10.1016/j.jgr.2014.05.008] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2014] [Revised: 05/21/2014] [Accepted: 05/22/2014] [Indexed: 11/24/2022] Open
Abstract
Background Panax ginseng Meyer is a traditional medicinal plant famous for its strong therapeutic effects and serves as an important herbal medicine. To understand and manipulate genes involved in secondary metabolic pathways including ginsenosides, transcriptome profiling of P. ginseng is essential. Methods RNA-seq analysis of adventitious roots of two P. ginseng cultivars, Chunpoong (CP) and Cheongsun (CS), was performed using the Illumina HiSeq platform. After transcripts were assembled, expression profiling was performed. Results Assemblies were generated from ∼85 million and ∼77 million high-quality reads from CP and CS cultivars, respectively. A total of 35,527 and 27,716 transcripts were obtained from the CP and CS assemblies, respectively. Annotation of the transcriptomes showed that approximately 90% of the transcripts had significant matches in public databases. We identified several candidate genes involved in ginsenoside biosynthesis. In addition, a large number of transcripts (17%) with different gene ontology designations were uniquely detected in adventitious roots compared to normal ginseng roots. Conclusion This study will provide a comprehensive insight into the transcriptome of ginseng adventitious roots, and a way for successful transcriptome analysis and profiling of resource plants with less genomic information. The transcriptome profiling data generated in this study are available in our newly created adventitious root transcriptome database (http://im-crop.snu.ac.kr/transdb/index.php) for public use.
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Subramaniyam S, Mathiyalagan R, Natarajan S, Kim YJ, Jang MG, Park JH, Yang DC. Transcript expression profiling for adventitious roots of Panax ginseng Meyer. Gene 2014; 546:89-96. [PMID: 24831831 DOI: 10.1016/j.gene.2014.05.024] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2014] [Revised: 04/26/2014] [Accepted: 05/07/2014] [Indexed: 02/06/2023]
Abstract
Panax ginseng Meyer is one of the major medicinal plants in oriental countries belonging to the Araliaceae family which are the primary source for ginsenosides. However, very few genes were characterized for ginsenoside pathway, due to the limited genome information. Through this study, we obtained a comprehensive transcriptome from adventitious roots, which were treated with methyl jasmonic acids for different time points (control, 2h, 6h, 12h, and 24h) and sequenced by RNA 454 pyrosequencing technology. Reference transcriptome 39,304,529 (0.04GB) was obtained from 5,724,987,880 bases (5.7GB) of 22 libraries by de novo assembly and 35,266 (58.5%) transcripts were annotated with biological schemas (GO and KEGG). The digital gene expression patterns were obtained from in vitro grown adventitious root sequences which mapped to reference, from that, 3813 (6.3%) unique transcripts were involved in ≥2 fold up and downregulations. Finally, candidates for ginsenoside pathway genes were predicted from observed expression patterns. Among them, 30 transcription factors, 20 cytochromes, and 11 glycosyl transferases were predicted as ginsenoside candidates. These data can remarkably expand the existing transcriptome resources of Panax, especially to predict existence of gene networks in P. ginseng. The entity of the data provides a valuable platform to reveal more on secondary metabolism and abiotic stresses from P. ginseng in vitro grown adventitious roots.
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Affiliation(s)
- Sathiyamoorthy Subramaniyam
- Graduate School of Biotechnology & Ginseng Bank, College of Life Science, Kyung Hee University, Yongin 449-701, South Korea; Insilicogen Inc., #909, Venture Valley, 958, Gosaek-dong, Gwonseon-gu, Suwon, Gyeonggi-do 441-813, South Korea
| | - Ramya Mathiyalagan
- Graduate School of Biotechnology & Ginseng Bank, College of Life Science, Kyung Hee University, Yongin 449-701, South Korea
| | - Sathishkumar Natarajan
- Graduate School of Biotechnology & Ginseng Bank, College of Life Science, Kyung Hee University, Yongin 449-701, South Korea
| | - Yu-Jin Kim
- Graduate School of Biotechnology & Ginseng Bank, College of Life Science, Kyung Hee University, Yongin 449-701, South Korea
| | - Moon-Gi Jang
- Graduate School of Biotechnology & Ginseng Bank, College of Life Science, Kyung Hee University, Yongin 449-701, South Korea
| | - Jun-Hyung Park
- Insilicogen Inc., #909, Venture Valley, 958, Gosaek-dong, Gwonseon-gu, Suwon, Gyeonggi-do 441-813, South Korea
| | - Deok Chun Yang
- Graduate School of Biotechnology & Ginseng Bank, College of Life Science, Kyung Hee University, Yongin 449-701, South Korea.
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Changes in Antioxidant Enzyme Activity and Transcript Levels of Related Genes in Limonium sinenseKuntze Seedlings under NaCl Stress. J CHEM-NY 2014. [DOI: 10.1155/2014/749047] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
The halophyteLimonium sinenseKuntze is used in traditional Chinese medicine for clearing heat and for detoxification. To examine the detoxification and salt-tolerance mechanisms of this plant, we analyzed antioxidant enzyme activities and transcript levels of genes encoding antioxidant enzymes inL. sinenseseedlings under salt stress (500 mmol/L NaCl). Catalase showed the largest increase in activity, peaking on day 4 of the 7-day NaCl treatment. Peroxidase and superoxide dismutase activities also increased, peaking on days 2 and 3 of the NaCl treatment, respectively. The activities of antioxidant enzymes decreased as the duration of the NaCl treatment extended. The transcript levels of genes encoding antioxidant enzymes were upregulated under NaCl stress. The peak in theLsCATtranscript level was earlier than the peaks inLsAPXandLsGPXtranscript levels. The malondialdehyde content only slightly increased inL. sinenseseedlings under NaCl stress. This was indicative of a low level of lipid peroxidation, consistent with the increased antioxidant enzyme activities and gene transcript levels. These results show that, under NaCl stress, the antioxidant system ofL. sinenseis activated and effectively scavenges reactive oxygen species. This reduces oxidative damage and allows the plant to maintain growth under NaCl stress.
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Overexpression of ferredoxin, PETF, enhances tolerance to heat stress in Chlamydomonas reinhardtii. Int J Mol Sci 2013; 14:20913-29. [PMID: 24141188 PMCID: PMC3821650 DOI: 10.3390/ijms141020913] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2013] [Revised: 10/10/2013] [Accepted: 10/11/2013] [Indexed: 11/16/2022] Open
Abstract
Reactive oxygen species (ROS) produced by plants in adverse environments can cause damage to organelles and trigger cell death. Removal of excess ROS can be achieved through the ascorbate scavenger pathway to prevent plant cell death. The amount of this scavenger can be regulated by ferredoxin (FDX). Chloroplastic FDXs are electron transfer proteins that perform in distributing photosynthetic reducing power. In this study, we demonstrate that overexpression of the endogenous photosynthetic FDX gene, PETF, in Chlamydomonas reinhardtii could raise the level of reduced ascorbate and diminish H2O2 levels under normal growth conditions. Furthermore, the overexpressing PETF transgenic Chlamydomonas lines produced low levels of H2O2 and exhibited protective effects that were observed through decreased chlorophyll degradation and increased cell survival under heat-stress conditions. The findings of this study suggest that overexpression of PETF can increase the efficiency of ROS scavenging in chloroplasts to confer heat tolerance. The roles of PETF in the downregulation of the ROS level offer a method for potentially improving the tolerance of crops against heat stress.
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Wang C, Deng P, Chen L, Wang X, Ma H, Hu W, Yao N, Feng Y, Chai R, Yang G, He G. A wheat WRKY transcription factor TaWRKY10 confers tolerance to multiple abiotic stresses in transgenic tobacco. PLoS One 2013; 8:e65120. [PMID: 23762295 PMCID: PMC3677898 DOI: 10.1371/journal.pone.0065120] [Citation(s) in RCA: 154] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2013] [Accepted: 04/23/2013] [Indexed: 12/11/2022] Open
Abstract
WRKY transcription factors are reported to be involved in defense regulation, stress response and plant growth and development. However, the precise role of WRKY transcription factors in abiotic stress tolerance is not completely understood, especially in crops. In this study, we identified and cloned 10 WRKY genes from genome of wheat (Triticum aestivum L.). TaWRKY10, a gene induced by multiple stresses, was selected for further investigation. TaWRKY10 was upregulated by treatment with polyethylene glycol, NaCl, cold and H2O2. Result of Southern blot indicates that the wheat genome contains three copies of TaWRKY10. The TaWRKY10 protein is localized in the nucleus and functions as a transcriptional activator. Overexpression of TaWRKY10 in tobacco (Nicotiana tabacum L.) resulted in enhanced drought and salt stress tolerance, mainly demonstrated by the transgenic plants exhibiting of increased germination rate, root length, survival rate, and relative water content under these stress conditions. Further investigation showed that transgenic plants also retained higher proline and soluble sugar contents, and lower reactive oxygen species and malonaldehyde contents. Moreover, overexpression of the TaWRKY10 regulated the expression of a series of stress related genes. Taken together, our results indicate that TaWRKY10 functions as a positive factor under drought and salt stresses by regulating the osmotic balance, ROS scavenging and transcription of stress related genes.
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Affiliation(s)
- Chen Wang
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Chinese National Center of Plant Gene Research (Wuhan) HUST Part, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology (HUST), Wuhan, China
| | - Pengyi Deng
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Chinese National Center of Plant Gene Research (Wuhan) HUST Part, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology (HUST), Wuhan, China
| | - Liulin Chen
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Chinese National Center of Plant Gene Research (Wuhan) HUST Part, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology (HUST), Wuhan, China
| | - Xiatian Wang
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Chinese National Center of Plant Gene Research (Wuhan) HUST Part, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology (HUST), Wuhan, China
| | - Hui Ma
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Chinese National Center of Plant Gene Research (Wuhan) HUST Part, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology (HUST), Wuhan, China
| | - Wei Hu
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Chinese National Center of Plant Gene Research (Wuhan) HUST Part, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology (HUST), Wuhan, China
| | - Ningcong Yao
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Chinese National Center of Plant Gene Research (Wuhan) HUST Part, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology (HUST), Wuhan, China
| | - Ying Feng
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Chinese National Center of Plant Gene Research (Wuhan) HUST Part, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology (HUST), Wuhan, China
| | - Ruihong Chai
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Chinese National Center of Plant Gene Research (Wuhan) HUST Part, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology (HUST), Wuhan, China
| | - Guangxiao Yang
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Chinese National Center of Plant Gene Research (Wuhan) HUST Part, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology (HUST), Wuhan, China
| | - Guangyuan He
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Chinese National Center of Plant Gene Research (Wuhan) HUST Part, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology (HUST), Wuhan, China
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Balusamy SRD, Kim YJ, Rahimi S, Senthil KS, Lee OR, Lee S, Yang DC. Transcript pattern of cytochrome P450, antioxidant and ginsenoside biosynthetic pathway genes under heavy metal stress in Panax ginseng Meyer. BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2013; 90:194-202. [PMID: 23232757 DOI: 10.1007/s00128-012-0891-5] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2012] [Accepted: 11/09/2012] [Indexed: 05/04/2023]
Abstract
The differential transcript patterns of five antioxidant genes, four genes related to the ginsenoside pathway and five P450 genes related to defense mechanism were investigated in in vitro adventitious roots of Panax ginseng after exposure to two different concentrations of heavy metals for 7 days. PgSOD-1 and PgCAT transcription increased in a dose-dependent manner during the exposure to CuCl(2), NiCl(2), and CdCl(2), while all other tested scavenging enzymes didn't show significant increase during heavy metal exposure. Conversely, the mRNA transcripts of PgSQE, PgDDS were highly responsive to CuCl(2) compared to NiCl(2) exposure. However, the transcript profile of Pgβ-AS was highly induced upon NiCl(2) treatment compared to CuCl(2) and CdCl(2) exposure. The expressions of PgCYP716A42, PgCYP71A50U, and PgCYP82C22 were regulated in similar manners, and all showed the highest transcript profile at 100 μM of CuCl(2), CdCl(2), and NiCl(2) except PgCYP71D184, which showed the highest transcript level when subjected to 10 μM CuCl(2) and NiCl(2). Thus it may suggest that in P. ginseng heavy metal interaction on cell membrane induced expression of various defense related genes via jasmonic acid pathway and also possesses cross talk networks with other defense related pathways.
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Affiliation(s)
- Sri Renuka Devi Balusamy
- Korean Ginseng Center and Ginseng Genetic Resource Bank, Kyung Hee University, 1 Seocheon, Giheung-gu Yongin-si, Gyeonggi-do, 449-701, South Korea
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Tang T, Huang DW, Zhou CQ, Li X, Xie QJ, Liu FS. Molecular cloning and expression patterns of copper/zinc superoxide dismutase and manganese superoxide dismutase in Musca domestica. Gene 2012; 505:211-20. [DOI: 10.1016/j.gene.2012.06.025] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2012] [Revised: 06/04/2012] [Accepted: 06/15/2012] [Indexed: 10/28/2022]
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Kostyn K, Czemplik M, Kulma A, Bortniczuk M, Skała J, Szopa J. Genes of phenylpropanoid pathway are activated in early response to Fusarium attack in flax plants. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2012; 190:103-15. [PMID: 22608524 DOI: 10.1016/j.plantsci.2012.03.011] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2012] [Revised: 03/16/2012] [Accepted: 03/30/2012] [Indexed: 05/19/2023]
Abstract
Fusarium is the most common flax pathogen causing serious plant diseases and in most cases leading to plant death. To protect itself, the plant activates a number of genes and metabolic pathways, both to counteract the effects of the pathogen, and to eliminate the threat. The identification of the plant genes which respond to infection is the approach, that has been used in this study. Forty-seven flax genes have been identified by means of cDNA subtraction method as those, which respond to pathogen infection. Subtracted genes were classified into several classes and the prevalence of the genes involved in the broad spectrum of antioxidants biosynthesis has been noticed. By means of semi-quantitative RT-PCR and metabolite profiling, the involvement of subtracted genes controlling phenylpropanoid pathway in flax upon infection was positively verified. We identified the key genes of the synthesis of these compounds. At the same time we determined the level of the metabolites produced in the phenylpropanoid pathway (flavonoids, phenolic acids) in early response to Fusarium attack by means of GC-MS technique. To the best of our knowledge this is the first report to describe genes and metabolites of early flax response to pathogens studied in a comprehensive way.
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Affiliation(s)
- Kamil Kostyn
- Faculty of Biotechnology, University of Wrocław, Przybyszewskiego 63, 51-148 Wrocław, Poland.
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Halıcı M, İmik H, Koç M, Gümüş R. Effects of α-lipoic acid, vitamins E and C upon the heat stress in Japanese quails. J Anim Physiol Anim Nutr (Berl) 2011; 96:408-15. [DOI: 10.1111/j.1439-0396.2011.01156.x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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