1
|
Gaonkar S, Tamse V, Prabhu N, Fernandes CFE, Borkar S. Plant-growth promotion by halotolerant black yeast Hortaea sp. strain PMGTC8 associated with salt crystals from solar saltern of Goa, India. Arch Microbiol 2023; 206:15. [PMID: 38078941 DOI: 10.1007/s00203-023-03740-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2023] [Revised: 11/07/2023] [Accepted: 11/09/2023] [Indexed: 12/18/2023]
Abstract
Plant-growth-promoting microbes are sustainable alternative to improve the soil fertility and plant-growth facilitating the nutrients uptake in normal and stressed environmental conditions. Among these, halotolerant and halophilic microorganisms with plant- growth-promoting ability are better candidates that could be exploited as bioinoculants in salinity affected agriculture soils. Considering this, the current study aimed to isolate, characterize and determine the plant-growth-promoting potential of the culturable halotolerant black yeast associated with salt crystals from the solar saltern of Goa, India. The results revealed 1.3 × 104 CFU/g of viable number of colonies on 25% NaCl Tryptone Yeast Extract (NTYE) agar after 30-45 days incubation. Among ten morphologically distinct isolates, a black pigmented strain PMGTC8 was characterized as yeast-like and appeared two celled with average size of 4.30 ± 0.14 µm under scanning electron micrograph. Based on phylogenetic analysis using internal transcribed spacer (ITS) marker, the isolate showed maximum similarity to genus Hortaea. Interestingly, Hortaea sp. strain PMGTC8 (OR527117) exhibited plant-growth-promoting characteristics and caused significantly (p < 0.01) higher germination rate (93.33%), vigor index (964.22), shoot (3.95 cm) and root length (6.38 cm), and fresh weight (0.039 g) of Oryza sativa var. Korgut. This halotolerant black yeast may play a role in nutrition of the plants growing in saline soils. Conclusively, the current findings report for the first time the plant-growth-promoting potential of Hortaea sp. strain PMGTC8 associated with salt crystals of solar saltern, Goa, India for its possible use as bio-fertilizers in saline agriculture soils.
Collapse
Affiliation(s)
- Sanket Gaonkar
- Department of Microbiology, P.E.S' s R. S. N. College of Arts and Science, Farmagudi, Ponda, Goa, 403401, India.
| | - Vaibhavi Tamse
- Department of Microbiology, P.E.S' s R. S. N. College of Arts and Science, Farmagudi, Ponda, Goa, 403401, India
| | - Neha Prabhu
- Department of Microbiology, P.E.S' s R. S. N. College of Arts and Science, Farmagudi, Ponda, Goa, 403401, India
| | - Carolina F E Fernandes
- Department of Microbiology, P.E.S' s R. S. N. College of Arts and Science, Farmagudi, Ponda, Goa, 403401, India
| | - Sunita Borkar
- Department of Microbiology, P.E.S' s R. S. N. College of Arts and Science, Farmagudi, Ponda, Goa, 403401, India
| |
Collapse
|
2
|
Calvert J, McTaggart A, Carvalhais LC, Rensink S, Dennis PG, Drenth A, Shivas R. Divergent rainforest tree microbiomes between phases of the monsoon cycle, host plants and tissues. PLANT BIOLOGY (STUTTGART, GERMANY) 2023; 25:860-870. [PMID: 37647418 DOI: 10.1111/plb.13569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Accepted: 07/26/2023] [Indexed: 09/01/2023]
Abstract
The Australian Monsoon Tropics (AMT) contain some of the most biodiverse forests on the continent. Little is known about the dynamics of rainforest plant microbiomes in general, and there have been no community-level studies on Australian rainforest endophytes, their seasonality, tissue and host specificity. We tested whether community composition of tropical tree endophytes (fungi and bacteria) differs: (i) at different points during a monsoon cycle, (ii) between leaf and stem tissues, (iii) between forest microclimates (gully/ridge), and between (iv) host plant species, and (v) host plant clade, using amplicon sequencing of the bacterial 16S and fungal ITS2 gene regions. Results indicated that the composition of rainforest plant microbiomes differs between wet and dry seasons, which may be explained by physiological shifts in host plants due to annual climate fluctuations from mesic to xeric. Endophyte microbiomes differed between leaves and stems. Distinct fungal communities were associated with host species and clades, with some trees enriched in a number of fungal taxa compared to host plants in other clades. Diversity of bacterial endophytes in plant stems increased in the dry season. We conclude that the microbiomes of tropical plants are responsive to monsoonal climate variation, are highly compartmentalised between plant tissues, and may be partly shaped by the relatedness of their host plants.
Collapse
Affiliation(s)
- J Calvert
- Centre for Horticultural Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Dutton Park, QLD, Australia
| | - A McTaggart
- Centre for Horticultural Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Dutton Park, QLD, Australia
| | - L C Carvalhais
- Centre for Horticultural Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Dutton Park, QLD, Australia
| | - S Rensink
- Centre for Horticultural Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Dutton Park, QLD, Australia
| | - P G Dennis
- School of Earth and Environmental Sciences, The University of Queensland, St Lucia, QLD, Australia
| | - A Drenth
- Centre for Horticultural Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Dutton Park, QLD, Australia
| | - R Shivas
- Centre for Horticultural Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Dutton Park, QLD, Australia
| |
Collapse
|
3
|
Chen S. Mechanism of Zn alleviates Cd toxicity in mangrove plants ( Kandelia obovata). FRONTIERS IN PLANT SCIENCE 2023; 13:1035836. [PMID: 36816484 PMCID: PMC9932546 DOI: 10.3389/fpls.2022.1035836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/03/2022] [Accepted: 12/09/2022] [Indexed: 06/18/2023]
Abstract
Cadmium (Cd) pollution is very common and serious in mangrove ecosystems in China. Zinc (Zn) has been used to reduce Cd accumulation in plants, and phenolic acid metabolism plays an important role in plant response to stress. In present study, in order to clarify whether Zn alleviates Cd toxicity in mangrove plants through phenolic acid metabolism, the Cd-contaminated Kandelia obovata plants were treated with different concentrations of (0, 80,300, and 400 mg·kg-1) ZnSO4 in a set of pot experiments and the biomass, the contents of Cd, Zn, soluble sugar, chlorophyll and the activities of 1,1-diphenyl-2-picrylhydrazyl (DPPH), ferric-reducing antioxidant power (FRAP), l-phenylalanine ammonia-lyase (PAL), shikimic acid dehydrogenase (SKDH), cinnamyl alcohol dehydrogenase (CAD) and polyphenol oxidase (PPO) in the leaves were analyzed. The results showed that Cd contents in the leaves of Kandelia obovata ranged from 0.077 to 0.197 mg·kg-1 under different treatments, and Zn contents ranged from 90.260 to 114.447 mg·kg-1. Low-dose ZnSO4 treatment (80 mg·kg-1) performed significant positive effects on the biomass, phenolic acid metabolism-related enzyme activities, antioxidant capacity, and chlorophyll and soluble sugar contents in the leaves of Cd-contaminated mangrove plants. At the meantime, the addition of low-dose ZnSO4 promoted the biosynthesis of hydroxycinnamic acid, hydroxybenzoic acid, and enhanced the plant antioxidant capacity, thus alleviated Cd toxicity in mangrove plants.
Collapse
|
4
|
Cadamuro RD, da Silveira Bastos IMA, Silva IT, da Cruz ACC, Robl D, Sandjo LP, Alves S, Lorenzo JM, Rodríguez-Lázaro D, Treichel H, Steindel M, Fongaro G. Bioactive Compounds from Mangrove Endophytic Fungus and Their Uses for Microorganism Control. J Fungi (Basel) 2021; 7:455. [PMID: 34200444 PMCID: PMC8228968 DOI: 10.3390/jof7060455] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Revised: 05/31/2021] [Accepted: 06/03/2021] [Indexed: 12/15/2022] Open
Abstract
Mangroves are ecosystems with unique characteristics due to the high salinity and amount of organic matter that house a rich biodiversity. Fungi have aroused much interest as they are an important natural source for the discovery of new bioactive compounds, with potential biotechnological and pharmacological interest. This review aims to highlight endophytic fungi isolated from mangrove plant species and the isolated bioactive compounds and their bioactivity against protozoa, bacteria and pathogenic viruses. Knowledge about this type of ecosystem is of great relevance for its preservation and as a source of new molecules for the control of pathogens that may be of importance for human, animal and environmental health.
Collapse
Affiliation(s)
- Rafael Dorighello Cadamuro
- Department of Microbiology, Immunology, and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil; (R.D.C.); (I.M.A.d.S.B.); (I.T.S.); (A.C.C.d.C.); (D.R.); (M.S.)
| | - Isabela Maria Agustini da Silveira Bastos
- Department of Microbiology, Immunology, and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil; (R.D.C.); (I.M.A.d.S.B.); (I.T.S.); (A.C.C.d.C.); (D.R.); (M.S.)
| | - Izabella Thais Silva
- Department of Microbiology, Immunology, and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil; (R.D.C.); (I.M.A.d.S.B.); (I.T.S.); (A.C.C.d.C.); (D.R.); (M.S.)
- Department of Pharmaceutical Sciences, Federal University Santa Catarina, Florianopolis 88040-900, SC, Brazil
| | - Ariadne Cristiane Cabral da Cruz
- Department of Microbiology, Immunology, and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil; (R.D.C.); (I.M.A.d.S.B.); (I.T.S.); (A.C.C.d.C.); (D.R.); (M.S.)
- Department of Dentistry, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
| | - Diogo Robl
- Department of Microbiology, Immunology, and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil; (R.D.C.); (I.M.A.d.S.B.); (I.T.S.); (A.C.C.d.C.); (D.R.); (M.S.)
| | - Louis Pergaud Sandjo
- Department of Chemistry, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil;
| | - Sergio Alves
- Laboratory of Biochemistry and Genetics, Federal University of Fronteira Sul, Chapecó 89802-112, SC, Brazil;
| | - Jose M. Lorenzo
- Centro Tecnológico de la Carne de Galicia, Avd. Galicia n° 4, Parque Tecnológico de Galicia, San Cibrao das Viñas, 32900 Ourense, Spain
- Área de Tecnología de los Alimentos, Facultad de Ciencias de Ourense, Universidad de Vigo, 32004 Ourense, Spain
| | | | - Helen Treichel
- Laboratory of Microbiology and Bioprocess, Federal University of Fronteira Sul, Erechim 99700-000, RS, Brazil;
| | - Mário Steindel
- Department of Microbiology, Immunology, and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil; (R.D.C.); (I.M.A.d.S.B.); (I.T.S.); (A.C.C.d.C.); (D.R.); (M.S.)
| | - Gislaine Fongaro
- Department of Microbiology, Immunology, and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil; (R.D.C.); (I.M.A.d.S.B.); (I.T.S.); (A.C.C.d.C.); (D.R.); (M.S.)
| |
Collapse
|
5
|
Czachura P, Owczarek-Kościelniak M, Piątek M. Salinomyces polonicus: A moderately halophilic kin of the most extremely halotolerant fungus Hortaea werneckii. Fungal Biol 2021; 125:459-468. [PMID: 34024593 DOI: 10.1016/j.funbio.2021.01.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Accepted: 01/13/2021] [Indexed: 01/04/2023]
Abstract
A clade where the most halotolerant fungus in the world - Hortaea werneckii, belongs (hereafter referred to as Hortaea werneckii lineage) includes five species: Hortaea werneckii, H. thailandica, Stenella araguata, Eupenidiella venezuelensis, and Magnuscella marina, of which the first species attracts increasing attention of mycologists. The species diversity and phylogenetic relationships within this lineage are weakly known. In this study two moderately halophilic black yeast strains were isolated from brine of graduation tower in Poland. Molecular phylogenetic analyses based on the rDNA ITS1-5.8S-ITS2 (=ITS), rDNA 28S D1-D2 (=LSU), and RNA polymerase II (rpb2) sequences showed that the two strains belong to Hortaea werneckii lineage but cannot be assigned to any described taxa. Accordingly, a new genus and species, Salinomyces and Salinomyces polonicus, are described for this fungus. Furthermore, molecular phylogenetic analyses have revealed that Hortaea thailandica is more closely related to S. polonicus than to H. werneckii. A new combination Salinomyces thailandicus is proposed for this fungus.
Collapse
Affiliation(s)
- Paweł Czachura
- W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512, Kraków, Poland.
| | | | - Marcin Piątek
- W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512, Kraków, Poland.
| |
Collapse
|
6
|
Casanova Navarro HM, Félix CR, Paulino GVB, Almeida JH, Valente P, Landell MF. Richness and biotechnological potential of the yeast community associated with the bromeliad phylloplane in the Brazilian Neotropical Forest. Mycol Prog 2020. [DOI: 10.1007/s11557-020-01631-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
|
7
|
Stander EA, Williams W, Mgwatyu Y, van Heusden P, Rautenbach F, Marnewick J, Le Roes-Hill M, Hesse U. Transcriptomics of the Rooibos (Aspalathus linearis) Species Complex. BIOTECH 2020; 9:biotech9040019. [PMID: 35822822 PMCID: PMC9258316 DOI: 10.3390/biotech9040019] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Revised: 07/28/2020] [Accepted: 08/04/2020] [Indexed: 12/18/2022] Open
Abstract
Rooibos (Aspalathus linearis), widely known as a herbal tea, is endemic to the Cape Floristic Region of South Africa (SA). It produces a wide range of phenolic compounds that have been associated with diverse health promoting properties of the plant. The species comprises several growth forms that differ in their morphology and biochemical composition, only one of which is cultivated and used commercially. Here, we established methodologies for non-invasive transcriptome research of wild-growing South African plant species, including (1) harvesting and transport of plant material suitable for RNA sequencing; (2) inexpensive, high-throughput biochemical sample screening; (3) extraction of high-quality RNA from recalcitrant, polysaccharide- and polyphenol rich plant material; and (4) biocomputational analysis of Illumina sequencing data, together with the evaluation of programs for transcriptome assembly (Trinity, IDBA-Trans, SOAPdenovo-Trans, CLC), protein prediction, as well as functional and taxonomic transcript annotation. In the process, we established a biochemically characterized sample pool from 44 distinct rooibos ecotypes (1–5 harvests) and generated four in-depth annotated transcriptomes (each comprising on average ≈86,000 transcripts) from rooibos plants that represent distinct growth forms and differ in their biochemical profiles. These resources will serve future rooibos research and plant breeding endeavours.
Collapse
Affiliation(s)
- Emily Amor Stander
- South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, Bellville 7535, South Africa; (E.A.S.); (W.W.); (Y.M.); (P.v.H.)
| | - Wesley Williams
- South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, Bellville 7535, South Africa; (E.A.S.); (W.W.); (Y.M.); (P.v.H.)
- Institute for Microbial Biotechnology and Metagenomics, University of the Western Cape, Bellville 7535, South Africa
| | - Yamkela Mgwatyu
- South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, Bellville 7535, South Africa; (E.A.S.); (W.W.); (Y.M.); (P.v.H.)
| | - Peter van Heusden
- South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, Bellville 7535, South Africa; (E.A.S.); (W.W.); (Y.M.); (P.v.H.)
| | - Fanie Rautenbach
- Applied Microbial and Health Biotechnology Institute, Cape Peninsula University of Technology, Bellville 7535, South Africa; (F.R.); (J.M.); (M.L.R.-H.)
| | - Jeanine Marnewick
- Applied Microbial and Health Biotechnology Institute, Cape Peninsula University of Technology, Bellville 7535, South Africa; (F.R.); (J.M.); (M.L.R.-H.)
| | - Marilize Le Roes-Hill
- Applied Microbial and Health Biotechnology Institute, Cape Peninsula University of Technology, Bellville 7535, South Africa; (F.R.); (J.M.); (M.L.R.-H.)
| | - Uljana Hesse
- South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, Bellville 7535, South Africa; (E.A.S.); (W.W.); (Y.M.); (P.v.H.)
- Institute for Microbial Biotechnology and Metagenomics, University of the Western Cape, Bellville 7535, South Africa
- Department of Biotechnology, University of the Western Cape, Bellville 7535, South Africa
- Correspondence:
| |
Collapse
|
8
|
Anteneh YS, Brown MH, Franco CMM. Characterization of a Halotolerant Fungus from a Marine Sponge. BIOMED RESEARCH INTERNATIONAL 2019; 2019:3456164. [PMID: 31871938 PMCID: PMC6907059 DOI: 10.1155/2019/3456164] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Revised: 10/15/2019] [Accepted: 10/29/2019] [Indexed: 11/17/2022]
Abstract
INTRODUCTION Marine sponges have established symbiotic interactions with a large number of microorganisms including fungi. Most of the studies so far have focussed on the characterization of sponge-associated bacteria and archaea with only a few reports on sponge-associated fungi. During the isolation and characterization of bacteria from marine sponges of South Australia, we observed multiple types of fungi. One isolate in particular was selected for further investigation due to its unusually large size and being chromogenic. Here, we report on the investigations on the physical, morphological, chemical, and genotypic properties of this yeast-like fungus. METHODS AND MATERIALS Sponge samples were collected from South Australian marine environments, and microbes were isolated using different isolation media under various incubation conditions. Microbial isolates were identified on the basis of morphology, staining characteristics, and their 16S rRNA or ITS/28S rRNA gene sequences. RESULTS Twelve types of yeast and fungal isolates were detected together with other bacteria and one of these fungi measured up to 35 μm in diameter with a unique chromogen compared to other fungi. Depending on the medium type, this unique fungal isolate appeared as yeast-like fungi with different morphological forms. The isolate can ferment and assimilate nearly all of the tested carbohydrates. Furthermore, it tolerated a high concentration of salt (up to 25%) and a range of pH and temperature. ITS and 28S rRNA gene sequencing revealed a sequence similarity of 93% and 98%, respectively, with the closest genera of Eupenidiella, Hortaea, and Stenella. CONCLUSIONS On the basis of its peculiar morphology, size, and genetic data, this yeast-like fungus possibly constitutes a new genus and the name Magnuscella marinae, gen nov., sp. nov., is proposed. This study is the first of its kind for the complete characterization of a yeast-like fungus from marine sponges. This novel isolate developed a symbiotic interaction with living hosts, which was not observed with other reported closest genera (they exist in a saprophytic relationship). The observed unique size and morphology may favour this new isolate to establish symbiotic interactions with living hosts.
Collapse
Affiliation(s)
- Yitayal S. Anteneh
- College of Medicine and Public Health, Medical Biotechnology, Flinders University, Bedford Park, Adelaide, SA 5042, Australia
- Department of Medical Microbiology, College of Medicine, Addis Ababa University, Addis Ababa, Ethiopia
| | - Melissa H. Brown
- College of Science and Engineering, Flinders University, Bedford Park, Adelaide, SA 5042, Australia
| | - Christopher M. M. Franco
- College of Medicine and Public Health, Medical Biotechnology, Flinders University, Bedford Park, Adelaide, SA 5042, Australia
| |
Collapse
|
9
|
Fungi in salterns. J Microbiol 2019; 57:717-724. [DOI: 10.1007/s12275-019-9195-3] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Revised: 06/20/2019] [Accepted: 06/20/2019] [Indexed: 10/26/2022]
|
10
|
Chi WC, Chen W, He CC, Guo SY, Cha HJ, Tsang LM, Ho TW, Pang KL. A highly diverse fungal community associated with leaves of the mangrove plant Acanthus ilicifolius var. xiamenensis revealed by isolation and metabarcoding analyses. PeerJ 2019; 7:e7293. [PMID: 31328048 PMCID: PMC6625500 DOI: 10.7717/peerj.7293] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Accepted: 06/12/2019] [Indexed: 12/27/2022] Open
Abstract
A high diversity of culturable foliar endophytic fungi is known from various mangrove plants, and the core taxa include species from Colletotrichum, Pestalotiopsis, Phoma, Phomopsis, Sporomiella, among others. Since a small fraction of fungi is able to grow in culture, this study investigated the diversity of fungi associated with leaves of Acanthus ilicifolius var. xiamenensis using both isolation and metabarcoding approaches. A total of 203 isolates were cultured from surface-sterilized leaves, representing 47 different fungal species: 30 species from the winter samples (104 isolates), and 26 species from the summer samples (99 isolates). Ascomycota was dominant in both types of leaf samples, while Basidiomycota was isolated only from the summer samples. Drechslera dematioidea (10.58%, percentage of occurrence), Colletotrichum sp. 3 (7.69%) and Alternaria sp. (7.69%) were dominant in the winter samples; Fusarium oxysporum (13.13%), Diaporthe endophytica (10.10%) and Colletotrichum sp. 1 (9.09%) in the summer samples. Overall, Corynespora cassiicola (6.90%), F. oxysporum (6.40%) and Guignardia sp. (6.40%) had the highest overall percentage of occurrence. In the metabarcoding analysis, a total of 111 operational taxonomic units (OTUs) were identified from 17 leaf samples: 96 OTUs from the winter and 70 OTUs from the summer samples. Sequences belonging to Ascomycota and Basidiomycota were detected in both samples but the former phylum was dominant over the latter. Based on read abundance, taxa having the highest percentage of occurrence included Alternaria sp. (3.46%), Cladosporium delicatulum (2.56%) and Pyrenochaetopsis leptospora (1.41%) in the winter leaves, and Aureobasidium sp. (10.72%), Cladosporium sp. (7.90%), C. delicatulum (3.45%) and Hortaea werneckii (3.21%) in the summer leaves. These latter four species also had the highest overall percentage of occurrence. Combining the results from both methods, a high diversity of fungi (at least 110 species) was found associated with leaves of A. ilicifolius var. xiamenensis. Many of the fungi identified were plant pathogens and may eventually cause diseases in the host.
Collapse
Affiliation(s)
- Wei-Chiung Chi
- Institute of Marine Biology and Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan.,Institute of Food Science, National Quemoy University, Kinmen, Taiwan
| | - Weiling Chen
- Institute of Marine Biology and Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan
| | - Chih-Chiao He
- Institute of Marine Biology and Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan
| | - Sheng-Yu Guo
- Institute of Marine Biology and Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan
| | - Hyo-Jung Cha
- Institute of Marine Biology and Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan
| | - Ling Ming Tsang
- School of Biological Science, Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR
| | - Tsz Wai Ho
- School of Biological Sciences, University of Western Australia, Perth, Australia
| | - Ka-Lai Pang
- Institute of Marine Biology and Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan
| |
Collapse
|
11
|
Zalar P, Zupančič J, Gostinčar C, Zajc J, de Hoog GS, De Leo F, Azua-Bustos A, Gunde-Cimerman N. The extremely halotolerant black yeast Hortaea werneckii - a model for intraspecific hybridization in clonal fungi. IMA Fungus 2019; 10:10. [PMID: 32647617 PMCID: PMC7325687 DOI: 10.1186/s43008-019-0007-5] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2019] [Accepted: 04/03/2019] [Indexed: 12/22/2022] Open
Abstract
The polymorphic black yeast Hortaea werneckii (Capnodiales, Ascomycota) is extremely halotolerant (growth from 0 to 30% [w/v] NaCl) and has been extensively studied as a model for halotolerance in Eukaryotes for over two decades. Its most frequent sources are hypersaline environments and adjacent sea-water habitats in temperate, subtropical and tropical climates. Although typically saprobic, H. werneckii can also act as a commensal coloniser on human skin, causing tinea nigra on hands and soles. Here, we report that addition of NaCl to culture media expands the growth range of H. werneckii to 37 °C, which explains its colonisation of human skin, with its increased salinity. The morphological and physiological plasticity/ versatility of H. werneckii indicate that a species complex might be involved. This was investigated in this polyphasic taxonomic analysis based on the global diversity of H. werneckii strains collected from hypersaline environments, and from humans and animals. Analysis of D1/D2domains of 28S and internal transcribed spacer rDNA revealed 10 and 17 genotypes, respectively, that were not always compliant. The genotypes have global distributions. Human and environmental strains with the same genotypes are intermingled. Due to the limited number of phylogenetically informative characters in the ribosomal DNA dataset, the partial genes encoding for β-tubulin (BTB) and mini-chromosome maintenance protein (MCM7) were also sequenced. The use of these genes was hampered by ambiguous sequences obtained by Sanger sequencing, as a consequence of the diploid and highly heterozygous genome of many H. werneckii strains. Analysis of the BTB and MCM7 genes showed that in some cases two copies of the gene from the same genome are positioned in distant phylogenetic clusters of the intraspecific gene tree. Analysis of whole-genome sequences of selected H. werneckii strains generally confirmed the phylogenetic distances estimated on the basis of ribosomal genes, but also showed substantial reticulation within the phylogenetic history of the strains. This is in line with the hypothesis that the diploid genomes of H. werneckii were formed by hybridizations, which have sometimes occurred between relatively divergent strains.
Collapse
Affiliation(s)
- Polona Zalar
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, SI-1000 Ljubljana, Slovenia
| | - Jerneja Zupančič
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, SI-1000 Ljubljana, Slovenia
| | - Cene Gostinčar
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, SI-1000 Ljubljana, Slovenia
- Lars Bolund Institute of Regenerative Medicine, BGI-Qingdao, Qingdao, 266555 China
| | - Janja Zajc
- Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia
| | - G. Sybren de Hoog
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, Utrecht, 3508 AD The Netherlands
- Centre of Expertise in Mycology of RadboudUMC, Canisius Wilhelmina Hospital, Nijmegen, The Netherlands
| | - Filomena De Leo
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences (ChiBioFarAm), University of Messina, Viale F. Stagno d’Alcontres, 31 98166 Messina, Italy
| | - Armando Azua-Bustos
- Centro de Astrobiología (CSIC-INTA), Madrid, Spain
- Instituto de Ciencias Biomédicas, Facultad de Ciencias de la Salud, Universidad Autónoma de Chile, 8910060 Santiago, Chile
| | - Nina Gunde-Cimerman
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, SI-1000 Ljubljana, Slovenia
| |
Collapse
|
12
|
Badali H, Al-Hatmi AMS, Fakhim H, Moghaddasi A, Khodavaisy S, Vaezi A, Ahangarkani F, de Hoog GS, Meis JF. In vitro activity of nine antifungal agents against a global collection of Hortaea werneckii isolates, the agent of tinea nigra. Int J Antimicrob Agents 2019; 54:95-98. [PMID: 31071468 DOI: 10.1016/j.ijantimicag.2019.05.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2019] [Revised: 04/06/2019] [Accepted: 05/01/2019] [Indexed: 11/25/2022]
Abstract
The in vitro susceptibility of molecularly identified Hortaea werneckii isolates (n = 37), the causative agent of tinea nigra, originating from clinical and environmental sources was determined for nine antifungal agents. Posaconazole had the lowest geometric mean minimum inhibitory concentration (GM MIC) (0.07 µg/mL), followed by voriconazole (0.13 µg/mL), isavuconazole (0.14 µg/mL), itraconazole (0.16 µg/mL), terbinafine (0.19 µg/mL) and amphotericin B (0.92 µg/mL). In contrast, fluconazole (14.56 µg/mL), caspofungin (2.41 µg/mL) and anidulafungin (1.42 µg/mL) demonstrated the highest GM MICs/MECs against H. werneckii.
Collapse
Affiliation(s)
- Hamid Badali
- Department of Medical Mycology, School of Medicine, Mazandaran University of Medical Sciences, Sari, Iran; Invasive Fungi Research Center, School of Medicine, Mazandaran University of Medical Sciences, Sari, Iran.
| | - Abdullah M S Al-Hatmi
- Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; Ministry of Health, Directorate General of Health Services, Ibri, Oman; Centre of Expertise in Mycology, Radboud University Medical Centre/Canisius Wilhelmina Hospital, Nijmegen, the Netherlands
| | - Hamed Fakhim
- Department of Medical Parasitology and Mycology, Faculty of Medicine, Urmia University of Medical Sciences, Urmia, Iran; Cellular and Molecular Research Center, Urmia University of Medical Sciences, Urmia, Iran
| | - Aidan Moghaddasi
- Department of Medical Mycology, School of Medicine, Mazandaran University of Medical Sciences, Sari, Iran; Student Research Committee, Mazandaran University of Medical Sciences, Sari, Iran
| | - Sadegh Khodavaisy
- Zoonoses Research Center, Kurdistan University of Medical Sciences, Sanandaj, Iran; Department of Medical Parasitology and Mycology, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran
| | - Afsane Vaezi
- Department of Medical Mycology, School of Medicine, Mazandaran University of Medical Sciences, Sari, Iran; Student Research Committee, Mazandaran University of Medical Sciences, Sari, Iran
| | - Fatemeh Ahangarkani
- Invasive Fungi Research Center, School of Medicine, Mazandaran University of Medical Sciences, Sari, Iran; Student Research Committee, Mazandaran University of Medical Sciences, Sari, Iran
| | - G Sybren de Hoog
- Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; Centre of Expertise in Mycology, Radboud University Medical Centre/Canisius Wilhelmina Hospital, Nijmegen, the Netherlands
| | - Jacques F Meis
- Centre of Expertise in Mycology, Radboud University Medical Centre/Canisius Wilhelmina Hospital, Nijmegen, the Netherlands; Department of Medical Microbiology and Infectious Diseases, Canisius Wilhelmina Hospital, Nijmegen, the Netherlands
| |
Collapse
|
13
|
Marchetta A, Gerrits van den Ende B, Al-Hatmi AMS, Hagen F, Zalar P, Sudhadham M, Gunde-Cimerman N, Urzì C, de Hoog S, De Leo F. Global Molecular Diversity of the Halotolerant Fungus Hortaea werneckii. Life (Basel) 2018; 8:E31. [PMID: 30041476 PMCID: PMC6161025 DOI: 10.3390/life8030031] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2018] [Revised: 07/11/2018] [Accepted: 07/18/2018] [Indexed: 12/21/2022] Open
Abstract
A global set of clinical and environmental strains of the halotolerant black yeast-like fungus Hortaea werneckii are analyzed by multilocus sequencing and AFLP, and physiological parameters are determined. Partial translation elongation factor 1-α proves to be suitable for typing because of the presence/absence of introns and also the presence of several SNPs. Local clonal expansion could be established by a combination of molecular methods, while the population from the Mediterranean Sea water also responds differently to combined temperature and salt stress. The species comprises molecular populations, which in part also differ physiologically allowing further diversification, but clinical strains did not deviate significantly from their environmental counterparts.
Collapse
Affiliation(s)
- Alessia Marchetta
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, 98122 Messina, Italy.
- Westerdijk Fungal Biodiversity Institute, 3584 CT Utrecht, The Netherlands.
| | | | - Abdullah M S Al-Hatmi
- Westerdijk Fungal Biodiversity Institute, 3584 CT Utrecht, The Netherlands.
- Centre of Expertise in Mycology of RadboudUMC/Canisius Wilhelmina Hospital, 6525 GA Nijmegen, The Netherlands.
- Ministry of Health, Directorate General of Health Services, 133 Ibri, Oman.
| | - Ferry Hagen
- Westerdijk Fungal Biodiversity Institute, 3584 CT Utrecht, The Netherlands.
| | - Polona Zalar
- Department of Biology, Biotechnical Faculty, University of Ljubljana, SI-1000 Ljubljana, Slovenia.
| | - Montarop Sudhadham
- Department of Biology, Faculty of Science and Technology, Suan Sunandha Rajabhat University, 10300 Bangkok, Thailand.
| | - Nina Gunde-Cimerman
- Department of Biology, Biotechnical Faculty, University of Ljubljana, SI-1000 Ljubljana, Slovenia.
| | - Clara Urzì
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, 98122 Messina, Italy.
| | - Sybren de Hoog
- Westerdijk Fungal Biodiversity Institute, 3584 CT Utrecht, The Netherlands.
- Centre of Expertise in Mycology of RadboudUMC/Canisius Wilhelmina Hospital, 6525 GA Nijmegen, The Netherlands.
| | - Filomena De Leo
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, 98122 Messina, Italy.
| |
Collapse
|
14
|
|
15
|
Li JL, Sun X, Chen L, Guo LD. Community structure of endophytic fungi of four mangrove species in Southern China. Mycology 2016; 7:180-190. [PMID: 30123630 PMCID: PMC6059130 DOI: 10.1080/21501203.2016.1258439] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2016] [Accepted: 11/04/2016] [Indexed: 11/25/2022] Open
Abstract
Mangrove forests play an important role in subtropical and tropical coastal ecosystems. Endophytic fungi are widely distributed in various ecosystems and have great contribution to global biodiversity. In order to better understand the effects of mangrove species and tissue types on endophytic fungal community, we investigated cultivable endophytic fungi in leaves and twigs of four mangroves Aegiceras corniculatum, Avicennia marina, Bruguiera gymnorrhiza, and Kandelia candel in Guangxi, China. The four tree species had similar overall colonisation rates of endophytic fungi (24-33%). The colonisation rates of endophytic fungi were higher in twigs (30-58%) than in leaves (6-25%) in the four plant species. A total of 36 endophytic fungal taxa were identified based on morphological characteristics and molecular data, including 35 Ascomycota and 1 Basidiomycota, dominated by Phomopsis, Phyllosticta, Xylaria, Leptosphaerulina, and Pestalotiopsis. The diversity of endophytic fungi was higher in twigs than in leaves in the four plant species. Some endophytic fungi showed host and tissue preference. The endophytic fungal community composition was different among four mangrove species and between leaf and twig tissues.
Collapse
Affiliation(s)
- Jia-Long Li
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Xiang Sun
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Liang Chen
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Liang-Dong Guo
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| |
Collapse
|
16
|
Kondratyuk TO, Kondratyuk SY, Morgaienko OO, Khimich MV, Beregova TV, Ostapchenko LI. Pseudonadsoniella brunnea (Meripilaceae, Agaricomycotina), a new brown yeast-like fungus producing melanin from the Antarctic; with notes on nomenclature and type confusion of Nadsoniella nigra. ACTA ACUST UNITED AC 2015. [DOI: 10.1556/034.57.2015.3-4.5] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Affiliation(s)
- T. O. Kondratyuk
- Institute of Biology, Scientific Educational Centre Taras Shevchenko National University of Kiev, Volodymyrska str. 64/13, 01601 Kyiv, Ukraine
| | - S. Y. Kondratyuk
- M. H. Kholodny Institute of Botany, Tereshchenkivska str. 2, 01004 Kyiv, Ukraine
| | - O. O. Morgaienko
- Institute of Biology, Scientific Educational Centre Taras Shevchenko National University of Kiev, Volodymyrska str. 64/13, 01601 Kyiv, Ukraine
| | - M. V. Khimich
- Institute of Biology, Scientific Educational Centre Taras Shevchenko National University of Kiev, Volodymyrska str. 64/13, 01601 Kyiv, Ukraine
| | - T. V. Beregova
- Institute of Biology, Scientific Educational Centre Taras Shevchenko National University of Kiev, Volodymyrska str. 64/13, 01601 Kyiv, Ukraine
| | - L. I. Ostapchenko
- Institute of Biology, Scientific Educational Centre Taras Shevchenko National University of Kiev, Volodymyrska str. 64/13, 01601 Kyiv, Ukraine
| |
Collapse
|
17
|
Enzymatic Activity and Susceptibility to Antifungal Agents of Brazilian Environmental Isolates of Hortaea werneckii. Mycopathologia 2015; 180:345-52. [DOI: 10.1007/s11046-015-9920-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2015] [Accepted: 06/30/2015] [Indexed: 10/23/2022]
|