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de Almeida CP, Barbosa RR, Ferraz CG, de Castro RD, Ribeiro PR. Genome-wide identification of the GDSL-type esterase/lipase protein (GELP) gene family in Ricinus communis and its transcriptional regulation during germination and seedling establishment under different abiotic stresses. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 214:108939. [PMID: 39029309 DOI: 10.1016/j.plaphy.2024.108939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 07/10/2024] [Accepted: 07/13/2024] [Indexed: 07/21/2024]
Abstract
GDSL-type esterase/lipase protein (GELP) genes are crucial in the specialized lipid metabolism, in the responses to abiotic stresses, and in the regulation of plant homeostasis. R. communis is an important oilseed crop species that can sustain growth and productivity when exposed to harsh environmental conditions. Herein, we raised the question of whether the GELP gene family could be involved in the acquisition of R. communis tolerance to abiotic stresses during seed germination and seedling establishment. Thus, we used bioinformatics and transcriptomics to characterize the R. communis GELP gene family. R. communis genome possesses 96 GELP genes that were characterized by extensive bioinformatics, including phylogenetic analysis, subcellular localization, exon-intron distribution, the analysis of regulatory cis-elements, tandem duplication, and physicochemical properties. Transcriptomics indicated that numerous RcGELP genes are readily responsive to high-temperature and salt stresses and might be potential candidates for genome editing techniques to develop abiotic stress-tolerant crops.
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Affiliation(s)
- Catherine P de Almeida
- Metabolomics Research Group, Instituto de Química, Universidade Federal da Bahia, Rua Barão de Jeremoabo s/n, 40170-115, Salvador, Brazil; Programa de Pós-Graduação em Química, Instituto de Química, Universidade Federal da Bahia, Rua Barão de Jeremoabo s/n, 40170-115, Salvador, Brazil
| | - Rhaissa R Barbosa
- Metabolomics Research Group, Instituto de Química, Universidade Federal da Bahia, Rua Barão de Jeremoabo s/n, 40170-115, Salvador, Brazil; Programa de Pós-Graduação em Química, Instituto de Química, Universidade Federal da Bahia, Rua Barão de Jeremoabo s/n, 40170-115, Salvador, Brazil
| | - Caline G Ferraz
- Metabolomics Research Group, Instituto de Química, Universidade Federal da Bahia, Rua Barão de Jeremoabo s/n, 40170-115, Salvador, Brazil; Programa de Pós-Graduação em Química, Instituto de Química, Universidade Federal da Bahia, Rua Barão de Jeremoabo s/n, 40170-115, Salvador, Brazil
| | - Renato D de Castro
- Metabolomics Research Group, Instituto de Química, Universidade Federal da Bahia, Rua Barão de Jeremoabo s/n, 40170-115, Salvador, Brazil
| | - Paulo R Ribeiro
- Metabolomics Research Group, Instituto de Química, Universidade Federal da Bahia, Rua Barão de Jeremoabo s/n, 40170-115, Salvador, Brazil; Programa de Pós-Graduação em Química, Instituto de Química, Universidade Federal da Bahia, Rua Barão de Jeremoabo s/n, 40170-115, Salvador, Brazil.
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2
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Barstow AC, Prasifka JR, Attia Z, Kane NC, Hulke BS. Genetic mapping of a pollinator preference trait: Nectar volume in sunflower ( Helianthus annuus L.). FRONTIERS IN PLANT SCIENCE 2022; 13:1056278. [PMID: 36600919 PMCID: PMC9806390 DOI: 10.3389/fpls.2022.1056278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 11/24/2022] [Indexed: 06/17/2023]
Abstract
Although high pollinator visitation is crucial to ensure the yields of pollinator-dependent crops, the quantitative trait loci (QTL) controlling nectar volume in sunflower (Helianthus annuus L.), a pollinator preference trait, have yet to be identified. To address this, a recombinant inbred line mapping population, derived from lines with contrasting nectar volume, was used to identify loci responsible for the phenotype. As a result, linkage mapping and QTL analysis discovered major loci on chromosomes 2 and 16 that are associated with variation in nectar volume in sunflower. Increased nectar volume is also associated with increased sugars and total energy available per floret. The regions on chromosomes 2 and 16 associated with the nectar phenotype exhibit indications of chromosome structural variation, such that the phenotype is associated with rearrangements affecting regions containing hundreds of genes. Candidate genes underlying QTL on chromosomes 9 and 16 are homologous to genes with nectary function in Arabidopsis. These results have implications for sunflower breeding, to enhance pollination efficiency in sunflower, as well as current and future studies on sunflower evolution.
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Affiliation(s)
- Ashley C. Barstow
- Department of Plant Sciences, North Dakota State University, Fargo, ND, United States
| | - Jarrad R. Prasifka
- Sunflower and Plant Biology Research Unit, Edward T. Schafer Agricultural Research Center, United States Department of Agriculture (USDA)-Agricultural Research Service, Fargo, ND, United States
| | - Ziv Attia
- Ecology and Evolutionary Biology Department, University of Colorado, Boulder, CO, United States
| | - Nolan C. Kane
- Ecology and Evolutionary Biology Department, University of Colorado, Boulder, CO, United States
| | - Brent S. Hulke
- Sunflower and Plant Biology Research Unit, Edward T. Schafer Agricultural Research Center, United States Department of Agriculture (USDA)-Agricultural Research Service, Fargo, ND, United States
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3
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Cenci A, Concepción-Hernández M, Guignon V, Angenon G, Rouard M. Genome-Wide Classification and Phylogenetic Analyses of the GDSL-Type Esterase/Lipase (GELP) Family in Flowering Plants. Int J Mol Sci 2022; 23:ijms232012114. [PMID: 36292971 PMCID: PMC9602515 DOI: 10.3390/ijms232012114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 10/05/2022] [Accepted: 10/07/2022] [Indexed: 11/16/2022] Open
Abstract
GDSL-type esterase/lipase (GELP) enzymes have key functions in plants, such as developmental processes, anther and pollen development, and responses to biotic and abiotic stresses. Genes that encode GELP belong to a complex and large gene family, ranging from tens to more than hundreds of members per plant species. To facilitate functional transfer between them, we conducted a genome-wide classification of GELP in 46 plant species. First, we applied an iterative phylogenetic method using a selected set of representative angiosperm genomes (three monocots and five dicots) and identified 10 main clusters, subdivided into 44 orthogroups (OGs). An expert curation for gene structures, orthogroup composition, and functional annotation was made based on a literature review. Then, using the HMM profiles as seeds, we expanded the classification to 46 plant species. Our results revealed the variable evolutionary dynamics between OGs in which some expanded, mostly through tandem duplications, while others were maintained as single copies. Among these, dicot-specific clusters and specific amplifications in monocots and wheat were characterized. This approach, by combining manual curation and automatic identification, was effective in characterizing a large gene family, allowing the establishment of a classification framework for gene function transfer and a better understanding of the evolutionary history of GELP.
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Affiliation(s)
- Alberto Cenci
- Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier, France
- Correspondence: (A.C.); (M.R.)
| | - Mairenys Concepción-Hernández
- Instituto de Biotecnología de las Plantas, Universidad Central “Marta Abreu” de Las Villas (UCLV), Carretera a Camajuaní km 5.5, Santa Clara C.P. 54830, Villa Clara, Cuba
- Research Group Plant Genetics, Vrije Universiteit Brussel (VUB), Pleinlaan 2, 1050 Brussels, Belgium
| | - Valentin Guignon
- Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier, France
| | - Geert Angenon
- Research Group Plant Genetics, Vrije Universiteit Brussel (VUB), Pleinlaan 2, 1050 Brussels, Belgium
| | - Mathieu Rouard
- Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier, France
- Correspondence: (A.C.); (M.R.)
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4
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Nicolson SW. Sweet solutions: nectar chemistry and quality. Philos Trans R Soc Lond B Biol Sci 2022; 377:20210163. [PMID: 35491604 PMCID: PMC9058545 DOI: 10.1098/rstb.2021.0163] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Accepted: 11/07/2021] [Indexed: 12/22/2022] Open
Abstract
Nectar, the main floral reward for pollinators, varies greatly in composition and concentration. The assumption that nectar quality is equivalent to its sugar (energy) concentration is too simple. Diverse non-sugar components, especially amino acids and secondary metabolites, play various roles in nutrition and health of pollinators. Many nectar compounds have indirect effects by altering the foraging behaviour of pollinators or protecting them from disease. This review also emphasizes the water component of nectar, often ignored because of evaporative losses and difficulties in sampling small nectar volumes. Nectar properties vary with environmental factors, pollinator visits and microbial contamination. Pollination mutualisms depend on the ability of insect and vertebrate pollinators to cope with and benefit from the variation and diversity in nectar chemistry. This article is part of the theme issue 'Natural processes influencing pollinator health: from chemistry to landscapes'.
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Affiliation(s)
- Susan W. Nicolson
- Department of Zoology and Entomology, University of Pretoria, Pretoria 0002, South Africa
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5
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Shen G, Sun W, Chen Z, Shi L, Hong J, Shi J. Plant GDSL Esterases/Lipases: Evolutionary, Physiological and Molecular Functions in Plant Development. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11040468. [PMID: 35214802 PMCID: PMC8880598 DOI: 10.3390/plants11040468] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Revised: 01/02/2022] [Accepted: 02/04/2022] [Indexed: 05/14/2023]
Abstract
GDSL esterases/lipases (GELPs), present throughout all living organisms, have been a very attractive research subject in plant science due mainly to constantly emerging properties and functions in plant growth and development under both normal and stressful conditions. This review summarizes the advances in research on plant GELPs in several model plants and crops, including Arabidopsis, rice, maize and tomato, while focusing on the roles of GELPs in regulating plant development and plant-environment interactions. In addition, the possible regulatory network and mechanisms of GELPs have been discussed.
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Luo F, Fang X, Liu H, Zhu T, Han S, Peng Q, Li S. Differential transcriptome analysis and identification of genes related to resistance to blight in three varieties of Bambusa pervariabilis × Dendrocalamopsis grandis. PeerJ 2021; 9:e12301. [PMID: 34721984 PMCID: PMC8530093 DOI: 10.7717/peerj.12301] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Accepted: 09/22/2021] [Indexed: 11/20/2022] Open
Abstract
Background Bambusa pervariabilis × Dendrocalamopsis grandis is a fast-growing bamboo that is widely introduced in southern China and has great economic and ecological benefits. In recent years, a blight of B. pervariabilis × D. grandis caused by Arthrinium phaeospermum has led to much branch damage and even death of entire bamboo forests. Methods To screen for resistance genes in B. pervariabilis × D. grandis, transcriptome sequencing technology was used to compare the gene expression profiles of different varieties of B. pervariabilis × D. grandis with variable resistance and the same varieties under different treatments. The Clusters of Orthologous Groups of Proteins (COG) database; the Gene Ontology (GO) database; and the Kyoto Encyclopedia of Genes and Genomes (KEGG) database were used to annotate and analyse the differentially expressed genes. Results A total of 26,157 and 11,648 differentially expressed genes were obtained in the different varieties after inoculation with A. phaeospermum and the same varieties after inoculation A. phaeospermum or sterile water, respectively. There were 23 co-upregulated DGEs and 143 co-downregulated DEGs in #3 and #8, #6 and #8, #6 and #3. There were 50 co-upregulated DGEs and 24 co-downregulated DEGs in the same varieties after inoculation A. phaeospermum or sterile water. The results showed that many genes involved in cell wall composition synthesis, redox reactions and signal transduction were significantly different after pathogen infection. Twenty-one candidate genes for blight resistance, such as pme53, cad5, pod, gdsl-ll and Myb4l, were found. The qRT-PCR results were consistent with the sequencing results, verifying their authenticity. These results provide a foundation for the further exploration of resistance genes and their functions.
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Affiliation(s)
- Fengying Luo
- College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan Province, China
| | - Xinmei Fang
- College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan Province, China
| | - Han Liu
- Ganzi Institute of Forestry Research, Kangding, Sichuan Province, China
| | - Tianhui Zhu
- College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan Province, China
| | - Shan Han
- College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan Province, China
| | - Qi Peng
- College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan Province, China
| | - Shujiang Li
- College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan Province, China.,National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River, Chengdu, Sichuan Province, China
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7
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Wang M, Zhang L, Wang Z. Chromosomal-Level Reference Genome of the Neotropical Tree Jacaranda mimosifolia D. Don. Genome Biol Evol 2021; 13:evab094. [PMID: 33944940 PMCID: PMC8214407 DOI: 10.1093/gbe/evab094] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/26/2021] [Indexed: 11/14/2022] Open
Abstract
Jacaranda mimosifolia D. Don is a deciduous tree widely cultivated in the tropics and subtropics of the world. It is famous for its beautiful blue flowers and pinnate compound leaves. In addition, this tree has great potential in environmental monitoring, soil quality improvement, and medicinal applications. However, a genome resource for J. mimosifolia has not been reported to date. In this study, we constructed a chromosome-level genome assembly of J. mimosifolia using PacBio sequencing, Illumina sequencing, and Hi-C technology. The final genome assembly was ∼707.32 Mb in size, 688.76 Mb (97.36%) of which could be grouped into 18 pseudochromosomes, with contig and scaffold N50 values of 16.77 and 39.98 Mb, respectively. A total of 30,507 protein-coding genes were predicted, 95.17% of which could be functionally annotated. Phylogenetic analysis among 12 plant species confirmed the close genetic relationship between J. mimosifolia and Handroanthus impetiginosus. Gene family clustering revealed 481 unique, 103 significantly expanded, and 16 significantly contracted gene families in the J. mimosifolia genome. This chromosome-level genome assembly of J. mimosifolia will provide a valuable genomic resource for elucidating the genetic bases of the morphological characteristics, adaption evolution, and active compounds biosynthesis of J. mimosifolia.
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Affiliation(s)
| | - Lei Zhang
- Key Laboratory of Ecological Protection of Agro-pastoral Ecotones in the Yellow River Basin, National Ethnic Affairs Commission of the People’s Republic of China, College of Biological Science & Engineering, North Minzu University, Yinchuan, China
| | - Zhiqiang Wang
- Institute for Advanced Study, Chengdu University, China
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8
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Chatt EC, Mahalim SN, Mohd-Fadzil NA, Roy R, Klinkenberg PM, Horner HT, Hampton M, Carter CJ, Nikolau BJ. Nectar biosynthesis is conserved among floral and extrafloral nectaries. PLANT PHYSIOLOGY 2021; 185:1595-1616. [PMID: 33585860 PMCID: PMC8133665 DOI: 10.1093/plphys/kiab018] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Accepted: 12/28/2020] [Indexed: 06/12/2023]
Abstract
Nectar is a primary reward mediating plant-animal mutualisms to improve plant fitness and reproductive success. Four distinct trichomatic nectaries develop in cotton (Gossypium hirsutum), one floral and three extrafloral, and the nectars they secrete serve different purposes. Floral nectar attracts bees for promoting pollination, while extrafloral nectar attracts predatory insects as a means of indirect protection from herbivores. Cotton therefore provides an ideal system for contrasting mechanisms of nectar production and nectar composition between different nectary types. Here, we report the transcriptome and ultrastructure of the four cotton nectary types throughout development and compare these with the metabolomes of secreted nectars. Integration of these datasets supports specialization among nectary types to fulfill their ecological niche, while conserving parallel coordination of the merocrine-based and eccrine-based models of nectar biosynthesis. Nectary ultrastructures indicate an abundance of rough endoplasmic reticulum positioned parallel to the cell walls and a profusion of vesicles fusing to the plasma membranes, supporting the merocrine model of nectar biosynthesis. The eccrine-based model of nectar biosynthesis is supported by global transcriptomics data, which indicate a progression from starch biosynthesis to starch degradation and sucrose biosynthesis and secretion. Moreover, our nectary global transcriptomics data provide evidence for novel metabolic processes supporting de novo biosynthesis of amino acids secreted in trace quantities in nectars. Collectively, these data demonstrate the conservation of nectar-producing models among trichomatic and extrafloral nectaries.
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Affiliation(s)
- Elizabeth C Chatt
- Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, 50010, Iowa
| | - Siti-Nabilla Mahalim
- Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, 50010, Iowa
| | - Nur-Aziatull Mohd-Fadzil
- Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, 50010, Iowa
| | - Rahul Roy
- Department of Plant and Microbial Biology, University of Minnesota Twin Cities, St. Paul, 55108, Minnesota
- Department of Biology, St. Catherine University, St. Paul, 55105, Minnesota
| | - Peter M Klinkenberg
- Department of Plant and Microbial Biology, University of Minnesota Twin Cities, St. Paul, 55108, Minnesota
| | - Harry T Horner
- Department of Genetics, Development and Cell Biology, Iowa State University, Ames, 50010, Iowa
- Roy J. Carver High Resolution Microscopy Facility, Iowa State University, Ames, 50010, Iowa
| | - Marshall Hampton
- Department of Mathematics and Statistics, University of Minnesota Duluth, Duluth, 55812, Minnesota
| | - Clay J Carter
- Department of Plant and Microbial Biology, University of Minnesota Twin Cities, St. Paul, 55108, Minnesota
| | - Basil J Nikolau
- Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, 50010, Iowa
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9
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Schmitt A, Roy R, Carter CJ. Nectar antimicrobial compounds and their potential effects on pollinators. CURRENT OPINION IN INSECT SCIENCE 2021; 44:55-63. [PMID: 33771735 DOI: 10.1016/j.cois.2021.03.004] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 02/24/2021] [Accepted: 03/15/2021] [Indexed: 06/12/2023]
Abstract
Nectar is a sugary, aqueous solution that plants offer as a reward to animal mutualists for visitation. Since nectars are so nutrient-rich, they often harbor significant microbial communities, which can be pathogenic, benign, or even sometimes beneficial to plant fitness. Through recent advances, it is now clear that these microbes alter nectar chemistry, which in turn influences mutualist behavior (e.g. pollinator visitation). To counteract unwanted microbial growth, nectars often contain antimicrobial compounds, especially in the form of proteins, specialized (secondary) metabolites, and metals. This review covers our current understanding of nectar antimicrobials, as well as their interplay with both microbes and insect visitors.
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Affiliation(s)
- Anthony Schmitt
- Department of Plant & Microbial Biology, University of Minnesota, 1479 Gortner Ave, St. Paul, MN 55108, USA
| | - Rahul Roy
- Biology Department, St. Catherine University, 2004 Randolph Ave, St. Paul, MN 55105, USA
| | - Clay J Carter
- Department of Plant & Microbial Biology, University of Minnesota, 1479 Gortner Ave, St. Paul, MN 55108, USA.
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Miguel S, Legrand G, Duriot L, Delporte M, Menin B, Michel C, Olry A, Chataigné G, Salwinski A, Bygdell J, Vercaigne D, Wingsle G, Hilbert JL, Bourgaud F, Hehn A, Gagneul D. A GDSL lipase-like from Ipomoea batatas catalyzes efficient production of 3,5-diCQA when expressed in Pichia pastoris. Commun Biol 2020; 3:673. [PMID: 33188250 PMCID: PMC7666189 DOI: 10.1038/s42003-020-01387-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2020] [Accepted: 10/09/2020] [Indexed: 12/18/2022] Open
Abstract
The synthesis of 3,5-dicaffeoylquinic acid (3,5-DiCQA) has attracted the interest of many researchers for more than 30 years. Recently, enzymes belonging to the BAHD acyltransferase family were shown to mediate its synthesis, albeit with notably low efficiency. In this study, a new enzyme belonging to the GDSL lipase-like family was identified and proven to be able to transform chlorogenic acid (5-O-caffeoylquinic acid, 5-CQA, CGA) in 3,5-DiCQA with a conversion rate of more than 60%. The enzyme has been produced in different expression systems but has only been shown to be active when transiently synthesized in Nicotiana benthamiana or stably expressed in Pichia pastoris. The synthesis of the molecule could be performed in vitro but also by a bioconversion approach beginning from pure 5-CQA or from green coffee bean extract, thereby paving the road for producing it on an industrial scale. Miguel et al. identify a new enzyme belonging to the GDSL lipase-like family that is involved in the final stage of transformation of 5-CQA into 3,5-diCQA. This enzyme is able to realize an efficient transformation by over 60%, making the transformation process a valuable technological tool that can be easily transferred on an industrial scale.
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Affiliation(s)
- Sissi Miguel
- Plant Advanced Technologies, Vandœuvre-lès-Nancy, France
| | - Guillaume Legrand
- UMR Transfrontalière BioEcoAgro N° 1158, Univ. Lille, INRAE, Univ. Liège, UPJV, ISA, Univ. Artois, Univ. Littoral Côte d'Opale, ICV - Institut Charles Viollette, 59000, Lille, France
| | - Léonor Duriot
- Plant Advanced Technologies, Vandœuvre-lès-Nancy, France
| | - Marianne Delporte
- UMR Transfrontalière BioEcoAgro N° 1158, Univ. Lille, INRAE, Univ. Liège, UPJV, ISA, Univ. Artois, Univ. Littoral Côte d'Opale, ICV - Institut Charles Viollette, 59000, Lille, France
| | - Barbara Menin
- Université de Lorraine-INRAE, LAE, 54000, Nancy, France
| | - Cindy Michel
- Plant Advanced Technologies, Vandœuvre-lès-Nancy, France
| | | | - Gabrielle Chataigné
- UMR Transfrontalière BioEcoAgro N° 1158, Univ. Lille, INRAE, Univ. Liège, UPJV, ISA, Univ. Artois, Univ. Littoral Côte d'Opale, ICV - Institut Charles Viollette, 59000, Lille, France
| | | | - Joakim Bygdell
- Chemistry Department, Umeå University, 90183, Umeå, Sweden
| | - Dominique Vercaigne
- UMR Transfrontalière BioEcoAgro N° 1158, Univ. Lille, INRAE, Univ. Liège, UPJV, ISA, Univ. Artois, Univ. Littoral Côte d'Opale, ICV - Institut Charles Viollette, 59000, Lille, France
| | - Gunnar Wingsle
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden
| | - Jean Louis Hilbert
- UMR Transfrontalière BioEcoAgro N° 1158, Univ. Lille, INRAE, Univ. Liège, UPJV, ISA, Univ. Artois, Univ. Littoral Côte d'Opale, ICV - Institut Charles Viollette, 59000, Lille, France
| | | | - Alain Hehn
- Université de Lorraine-INRAE, LAE, 54000, Nancy, France.
| | - David Gagneul
- UMR Transfrontalière BioEcoAgro N° 1158, Univ. Lille, INRAE, Univ. Liège, UPJV, ISA, Univ. Artois, Univ. Littoral Côte d'Opale, ICV - Institut Charles Viollette, 59000, Lille, France.
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11
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Bong J, Middleditch M, Loomes KM, Stephens JM. Proteomic analysis of honey. Identification of unique peptide markers for authentication of NZ mānuka (Leptospermum scoparium) honey. Food Chem 2020; 350:128442. [PMID: 33388180 DOI: 10.1016/j.foodchem.2020.128442] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2019] [Revised: 10/16/2020] [Accepted: 10/16/2020] [Indexed: 12/20/2022]
Abstract
Proteomics is an emerging tool in food authentication that has not been optimised for honey analysis. In this study, we present a qualitative proteomic analysis of New Zealand mānuka (Leptospermum scoparium) honey. A total of fifty bee-derived proteins were identified in the honey, the most predominant being major royal jelly proteins (MRJPs). We also demonstrate for the first time the presence of unique nectar-derived proteins in mānuka honey. A total of 17 mānuka plant proteins were identified, a-third of which were putative pathogenesis-related proteins. Two proteins involved in drought tolerance were also identified. Twelve candidate peptides were selected as potential authentication markers based on their uniqueness to mānuka honey. Nectar analyses confirmed the origin and specificity of these peptides to L. scoparium nectar, thus presenting peptide profiling as a viable and novel approach for mānuka honey authentication. Raw data are available via ProteomeXchange with identifier PXD021730.
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Affiliation(s)
- Jessie Bong
- School of Biological Sciences and Institute for Innovation in Biotechnology, University of Auckland, PB92019 Auckland, New Zealand
| | - Martin Middleditch
- Mass Spectrometry Centre, Auckland Science Analytical Service, School of Biological Sciences, University of Auckland, PB92019 Auckland, New Zealand
| | - Kerry M Loomes
- School of Biological Sciences and Institute for Innovation in Biotechnology, University of Auckland, PB92019 Auckland, New Zealand; Maurice Wilkins Centre for Molecular Biodiscovery, PB92019 Auckland, New Zealand.
| | - Jonathan M Stephens
- School of Biological Sciences and Institute for Innovation in Biotechnology, University of Auckland, PB92019 Auckland, New Zealand.
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12
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Ma XL, Milne RI, Zhou HX, Song YQ, Fang JY, Zha HG. Proteomics and post-secretory content adjustment of Nicotiana tabacum nectar. PLANTA 2019; 250:1703-1715. [PMID: 31414205 DOI: 10.1007/s00425-019-03258-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2019] [Accepted: 08/08/2019] [Indexed: 06/10/2023]
Abstract
MAIN CONCLUSION The tobacco nectar proteome mainly consists of pathogenesis-related proteins with two glycoproteins. Expression of nectarins was non-synchronous, and not nectary specific. After secretion, tobacco nectar changed from sucrose rich to hexose rich. Floral nectar proteins (nectarins) play important roles in inhibiting microbial growth in nectar, and probably also tailoring nectar chemistry before or after secretion; however, very few plant species have had their nectar proteomes thoroughly investigated. Nectarins from Nicotiana tabacum (NT) were separated using two-dimensional gel electrophoresis and then analysed using mass spectrometry. Seven nectarins were identified: acidic endochitinase, β-xylosidase, α-galactosidase, α-amylase, G-type lectin S-receptor-like serine/threonine-protein kinase, pathogenesis-related protein 5, and early nodulin-like protein 2. An eighth nectarin, a glycoprotein with unknown function, was identified following isolation from NT nectar using a Qproteome total glycoprotein kit, separation by SDS-PAGE, and identification by mass spectrometry. Expression of all identified nectarins, plus four invertase genes, was analysed by qRT PCR; none of these genes had nectary-specific expression, and none had synchronous expression. The total content of sucrose, hexoses, proteins, phenolics, and hydrogen peroxide were determined at different time intervals in secreted nectar, both within the nectar tube (in vivo) and following extraction from it during incubation at 30 °C for up to 40 h in plastic tubes (in vitro). After secretion, the ratio of hexose to sucrose substantially increased for in vivo nectar, but no sugar composition changes were detected in vitro. This implies that sucrose hydrolysis in vivo might be done by fixed apoplastic invertase. Both protein and hydrogen peroxide levels declined in vitro but not in vivo, implying that some factors other than nectarins act to maintain their levels in the flower, after secretion.
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Affiliation(s)
- Xue-Long Ma
- College of Life and Environment Sciences, Huangshan University, Huangshan, China
| | - Richard I Milne
- Institute of Molecular Plant Sciences, University of Edinburgh, Edinburgh, UK
| | - Hong-Xia Zhou
- College of Life and Environment Sciences, Huangshan University, Huangshan, China
| | - Yue-Qin Song
- College of Life and Environment Sciences, Huangshan University, Huangshan, China
| | - Jiang-Yu Fang
- College of Life and Environment Sciences, Huangshan University, Huangshan, China
| | - Hong-Guang Zha
- College of Life and Environment Sciences, Huangshan University, Huangshan, China.
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13
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Lee HJ, Park OK. Lipases associated with plant defense against pathogens. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 279:51-58. [PMID: 30709493 DOI: 10.1016/j.plantsci.2018.07.003] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Revised: 06/07/2018] [Accepted: 07/06/2018] [Indexed: 06/09/2023]
Abstract
When facing microbe invaders, plants activate genetic and metabolic defense mechanisms and undergo extracellular and intracellular changes to obtain a certain level of host resistance. Dynamic adjustment and adaptation occur in structures containing lipophilic compounds and cellular metabolites. Lipids encompassing fatty acids, fatty acid-based polymers, and fatty acid derivatives are part of the fundamental architecture of cells and tissues and are essential compounds in numerous biological processes. Lipid-associated plant defense responses are mostly facilitated by the activation of lipases (lipid hydrolyzing proteins), which cleave or transform lipid substrates in various subcellular compartments. In this review, several types of plant defense-associated lipases are described, including their molecular aspects, enzymatic actions, cellular functions, and possible functional relevance in plant defense. Defensive roles are discussed considering enzyme properties, lipid metabolism, downstream regulation, and phenotypic traits in loss-of-function mutants.
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Affiliation(s)
- Hye-Jung Lee
- Department of Life Sciences, Korea University, Seoul 02841, Republic of Korea.
| | - Ohkmae K Park
- Department of Life Sciences, Korea University, Seoul 02841, Republic of Korea.
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14
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Schmitt AJ, Sathoff AE, Holl C, Bauer B, Samac DA, Carter CJ. The major nectar protein of Brassica rapa is a non-specific lipid transfer protein, BrLTP2.1, with strong antifungal activity. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:5587-5597. [PMID: 30169819 PMCID: PMC6255697 DOI: 10.1093/jxb/ery319] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2017] [Accepted: 08/20/2018] [Indexed: 05/22/2023]
Abstract
Nectar is one of the key rewards mediating plant-mutualist interactions. In addition to sugars, nectars often contain many other compounds with important biological functions, including proteins. This study was undertaken to assess the proteinaceous content of Brassica rapa nectar. SDS-PAGE analysis of raw B. rapa nectar revealed the presence of ~10 proteins, with a major band at ~10 kDa. This major band was found to contain a non-specific lipid transfer protein encoded by B. rapa locus Bra028980 and subsequently termed BrLTP2.1. Sequence analysis of BrLTP2.1 predicted the presence of a signal peptide required for secretion from the cell, eight cysteines, and a mature molecular mass of 7.3 kDa. Constitutively expressed BrLTP2.1-GFP in Arabidopsis displayed accumulation patterns consistent with secretion from nectary cells. BrLTP2.1 was also found to have relatively high sequence similarity to non-specific lipid-transfer proteins with known functions in plant defense, including Arabidopsis DIR1. Heterologously expressed and purified BrLTP2.1 was extremely heat stable and bound strongly to saturated free fatty acids, but not methyl jasmonate. Recombinant BrLTP2.1 also had direct antimicrobial activity against an extensive range of plant pathogens, being particularly effective against necrotrophic fungi. Taken together, these results suggest that BrLTP2.1 may function to prevent microbial growth in nectars.
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Affiliation(s)
- Anthony J Schmitt
- Department of Plant & Microbial Biology, University of Minnesota, St Paul, MN, USA
| | - Andrew E Sathoff
- Department of Plant Pathology, University of Minnesota, St Paul, MN, USA
| | - Catherine Holl
- Department of Plant & Microbial Biology, University of Minnesota, St Paul, MN, USA
| | - Brittany Bauer
- Department of Plant & Microbial Biology, University of Minnesota, St Paul, MN, USA
| | - Deborah A Samac
- Department of Plant Pathology, University of Minnesota, St Paul, MN, USA
- USDA-ARS, Plant Science Research Unit, St Paul, MN, USA
| | - Clay J Carter
- Department of Plant & Microbial Biology, University of Minnesota, St Paul, MN, USA
- Correspondence:
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15
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Guimarães E, Tunes P, de Almeida Junior LD, Di Stasi LC, Dötterl S, Machado SR. Nectar Replaced by Volatile Secretion: A Potential New Role for Nectarless Flowers in a Bee-Pollinated Plant Species. FRONTIERS IN PLANT SCIENCE 2018; 9:1243. [PMID: 30233609 PMCID: PMC6134477 DOI: 10.3389/fpls.2018.01243] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2018] [Accepted: 08/06/2018] [Indexed: 05/31/2023]
Abstract
The presence of nectarless flowers in nectariferous plants is a widespread phenomenon in angiosperms. However, the frequency and distribution of nectarless flowers in natural populations, and the transition from nectariferous to nectarless flowers are poorly known. Variation in nectar production may affect mutualism stability, since energetic resource availability influences pollinators' foraging behavior. Here, we described the spatial and temporal nectar production patterns of Jacaranda oxyphylla, a bee-pollinated species that naturally presents nectarless flowers. Additionally, we compared nectariferous and nectarless floral disks in order to identify histological, subcellular and chemical changes that accompanied the loss of nectar production ability. For that we used standard methods for light and transmission electron microscopy, and gas chromatography coupled to mass spectrometry for chemical analyses. We verified that 47% of flowers did not produce nectar during the whole flower lifespan (nectarless flowers). We also observed remarkable inter-plant variation, with individuals having only nectarless flowers, others only nectariferous ones and most of them showing different proportions of both flower types, with variable nectar volumes (3-21 μl). Additionally, among nectariferous flowers, we registered two distinct rhythms of nectar production. 'Early' flowers produced nectar from 0 to 24 h, and 'late' flowers produced nectar from 24 to 48 h of anthesis. Although disks from nectariferous and nectarless flowers displayed similar histological organization, they differed strongly at subcellular level. Nectariferous ('early' and 'late') flowers exhibited a cellular apparatus typical of nectar secretion, while nectarless flowers exhibited osmophoric features. We found three aliphatic and one aromatic compound(s) that were detected in both the headspace of flowers and the disks of nectarless flowers, but not the disks of nectariferous flowers Although the remarkable variation in nectar availability may discourage pollinator visits, nectarless flowers might compensate it by producing volatile compounds that can be part of floral scent, acting as chemical attractants. Thus, nectarless flowers may be helping to maintain pollination in this scenario of trophic resource supply scarcity. We suggest that J. oxyphylla can be transitioning from a nectar-based pollination system to another resource-based or even to a deceit mechanism of pollination.
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Affiliation(s)
- Elza Guimarães
- Laboratory of Ecology and Evolution of Plant-Animal Interactions, Department of Botany, Institute of Biosciences, São Paulo State University, Botucatu, Brazil
| | - Priscila Tunes
- Graduation Program in Biological Sciences, Laboratory of Ecology and Evolution of Plant-Animal Interactions, Department of Botany, Institute of Biosciences, São Paulo State University, Botucatu, Brazil
| | - Luiz D. de Almeida Junior
- Laboratory of Phytomedicine, Pharmacology and Biotechnology, Department of Pharmacology, São Paulo State University, Botucatu, Brazil
| | - Luiz C. Di Stasi
- Laboratory of Phytomedicine, Pharmacology and Biotechnology, Department of Pharmacology, São Paulo State University, Botucatu, Brazil
| | - Stefan Dötterl
- Department of Biosciences, University of Salzburg, Salzburg, Austria
| | - Silvia R. Machado
- Laboratory of Research in Plant Anatomy and Ultrastructure, Department of Botany and Centre of Electron Microscopy, Institute of Biosciences, São Paulo State University, Botucatu, Brazil
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Chatt EC, von Aderkas P, Carter CJ, Smith D, Elliott M, Nikolau BJ. Sex-Dependent Variation of Pumpkin ( Cucurbita maxima cv. Big Max) Nectar and Nectaries as Determined by Proteomics and Metabolomics. FRONTIERS IN PLANT SCIENCE 2018; 9:860. [PMID: 30008725 PMCID: PMC6034135 DOI: 10.3389/fpls.2018.00860] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2018] [Accepted: 06/04/2018] [Indexed: 05/06/2023]
Abstract
Nectar is a floral reward that sustains mutualisms with pollinators, which in turn, improves fruit set. While it is known that nectar is a chemically complex solution, extensive identification and quantification of this complexity has been lacking. Cucurbita maxima cv. Big Max, like many cucurbits, is monoecious with separate male and female flowers. Attraction of bees to the flowers through the reward of nectar is essential for reproductive success in this economically valuable crop. In this study, the sex-dependent variation in composition of male and female nectar and the nectaries were defined using a combination of GC-MS based metabolomics and LC-MS/MS based proteomics. Metabolomics analysis of nectar detected 88 metabolites, of which 40 were positively identified, and includes sugars, sugar alcohols, aromatics, diols, organic acids, and amino acids. There are differences in 29 metabolites between male and female nectar. The nectar proteome consists of 45 proteins, of which 70% overlap between nectar types. Only two proteins are unique to female nectar, and 10 are specific to male nectar. The nectary proteome data, accessible at ProteomeXchange with identifier PXD009810, contained 339 identifiable proteins, 71% of which were descriptively annotatable by homology to Plantae. The abundance of 45 proteins differs significantly between male and female nectaries, as determined by iTRAQ labeling. This rich dataset significantly expands the known complexity of nectar composition, supports the hypothesis of H+-driven nectar solute export, and provides genetic and chemical targets to understand plant-pollinator interactions.
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Affiliation(s)
- Elizabeth C. Chatt
- Department of Biochemistry Biophysics and Molecular Biology, Iowa State University, Ames, IA, United States
| | | | - Clay J. Carter
- Department of Plant and Microbial Biology, University of Minnesota Twin Cities, St. Paul, MN, United States
| | - Derek Smith
- UVic Genome BC Protein Centre, Victoria, BC, Canada
| | | | - Basil J. Nikolau
- Department of Biochemistry Biophysics and Molecular Biology, Iowa State University, Ames, IA, United States
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17
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Cao Y, Han Y, Meng D, Abdullah M, Yu J, Li D, Jin Q, Lin Y, Cai Y. Expansion and evolutionary patterns of GDSL-type esterases/lipases in Rosaceae genomes. Funct Integr Genomics 2018; 18:673-684. [DOI: 10.1007/s10142-018-0620-1] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Revised: 05/24/2018] [Accepted: 05/31/2018] [Indexed: 01/20/2023]
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18
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Ma R, Yuan H, An J, Hao X, Li H. A Gossypium hirsutum GDSL lipase/hydrolase gene (GhGLIP) appears to be involved in promoting seed growth in Arabidopsis. PLoS One 2018; 13:e0195556. [PMID: 29621331 PMCID: PMC5886685 DOI: 10.1371/journal.pone.0195556] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2017] [Accepted: 03/23/2018] [Indexed: 01/20/2023] Open
Abstract
GDSL lipase (GLIP) plays a pivotal role in plant cell growth as a multifunctional hydrolytic enzyme. Herein, a cotton (Gossypium hirsutum L. cv Xuzhou 142) GDSL lipase gene (GhGLIP) was obtained from developing ovules and fibers. The GhGLIP cDNA contained an open reading frame (ORF) of 1,143 base pairs (bp) and encodes a putative polypeptide of 380 amino acid residues. Sequence alignment indicated that GhGLIP includes four enzyme catalytic amino acid residue sites of Ser (S), Gly (G), Asn (N) and His (H), located in four conserved blocks. Phylogenetic tree analysis showed that GhGLIP belongs to the typical class IV lipase family with potential functions in plant secondary metabolism. Subcellular distribution analysis demonstrated that GhGLIP localized to the nucleus, cytoplasm and plasma membrane. GhGLIP was expressed predominantly at 5-15 day post anthesis (dpa) in developing ovules and elongating fibers, measured as mRNA levels and enzyme activity. Ectopic overexpression of GhGLIP in Arabidopsis plants resulted in enhanced seed development, including length and fresh weight. Meanwhile, there was increased soluble sugar and protein storage in transgenic Arabidopsis plants, coupled with the promotion of lipase activity. Moreover, the expression of cotton GhGLIP is induced by ethylene (ETH) treatment in vitro. A 1,954-bp GhGLIP promoter was isolated and expressed high activity in driving green fluorescence protein (GFP) expression in tobacco leaves. Cis-acting element analysis of the GhGLIP promoter (pGhGLIP) indicated the presence of an ethylene-responsive element (ERE), and transgenic tobacco leaves with ectopic expression of pGhGLIP::GFP-GUS showed increased GUS activity after ETH treatment. In summary, these results suggest that GhGLIP is a functional enzyme involved in ovule and fiber development and performs significant roles in seed development.
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Affiliation(s)
- Rendi Ma
- College of Life Sciences, Key Laboratory of Agrobiotechnolog, Shihezi University, Shihezi, Xinjiang, China
| | - Hali Yuan
- College of Life Sciences, Key Laboratory of Agrobiotechnolog, Shihezi University, Shihezi, Xinjiang, China
| | - Jing An
- College of Life Sciences, Key Laboratory of Agrobiotechnolog, Shihezi University, Shihezi, Xinjiang, China
| | - Xiaoyun Hao
- College of Life Sciences, Key Laboratory of Agrobiotechnolog, Shihezi University, Shihezi, Xinjiang, China
| | - Hongbin Li
- College of Life Sciences, Key Laboratory of Agrobiotechnolog, Shihezi University, Shihezi, Xinjiang, China
- Key Laboratory of Xinjiang Phytomedicine Resource Utilization, Ministry of Education, Shihezi University, Shihezi, Xinjiang, China
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19
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Licá ICL, Soares AMDS, de Mesquita LSS, Malik S. Biological properties and pharmacological potential of plant exudates. Food Res Int 2018; 105:1039-1053. [DOI: 10.1016/j.foodres.2017.11.051] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Revised: 11/16/2017] [Accepted: 11/19/2017] [Indexed: 01/27/2023]
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20
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Roy R, Schmitt AJ, Thomas JB, Carter CJ. Review: Nectar biology: From molecules to ecosystems. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2017; 262:148-164. [PMID: 28716410 DOI: 10.1016/j.plantsci.2017.04.012] [Citation(s) in RCA: 98] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Revised: 04/17/2017] [Accepted: 04/19/2017] [Indexed: 05/06/2023]
Abstract
Plants attract mutualistic animals by offering a reward of nectar. Specifically, floral nectar (FN) is produced to attract pollinators, whereas extrafloral nectar (EFN) mediates indirect defenses through the attraction of mutualist predatory insects to limit herbivory. Nearly 90% of all plant species, including 75% of domesticated crops, benefit from animal-mediated pollination, which is largely facilitated by FN. Moreover, EFN represents one of the few defense mechanisms for which stable effects on plant health and fitness have been demonstrated in multiple systems, and thus plays a crucial role in the resistance phenotype of plants producing it. In spite of its central role in plant-animal interactions, the molecular events involved in the development of both floral and extrafloral nectaries (the glands that produce nectar), as well as the synthesis and secretion of the nectar itself, have been poorly understood until recently. This review will cover major recent developments in the understanding of (1) nectar chemistry and its role in plant-mutualist interactions, (2) the structure and development of nectaries, (3) nectar production, and (4) its regulation by phytohormones.
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Affiliation(s)
- Rahul Roy
- Department of Plant and Microbial Biology, University of Minnesota, Saint Paul, MN 55108, USA
| | - Anthony J Schmitt
- Department of Plant and Microbial Biology, University of Minnesota, Saint Paul, MN 55108, USA
| | - Jason B Thomas
- Department of Plant and Microbial Biology, University of Minnesota, Saint Paul, MN 55108, USA
| | - Clay J Carter
- Department of Plant and Microbial Biology, University of Minnesota, Saint Paul, MN 55108, USA.
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21
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Lai CP, Huang LM, Chen LFO, Chan MT, Shaw JF. Genome-wide analysis of GDSL-type esterases/lipases in Arabidopsis. PLANT MOLECULAR BIOLOGY 2017; 95:181-197. [PMID: 28840447 DOI: 10.1007/s11103-017-0648-y] [Citation(s) in RCA: 75] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2017] [Accepted: 08/03/2017] [Indexed: 05/19/2023]
Abstract
In this present study, we introduce a fundamental framework and provide information regarding the possible roles of GDSL-type esterase/lipase gene family in Arabidopsis. GDSL-type esterases/lipases are hydrolytic enzymes with multifunctional properties such as broad substrate specificity, regiospecificity, and stereoselectivity. In this study, we identified 105 GDSL-type esterase/lipase genes in Arabidopsis thaliana by conducting a comprehensive computational analysis. Expression studies indicated that GDSL-type lipase proteins showed varied expression patterns. Phylogenetic tree analysis indicated that AtGELP (Arabidopsis thaliana GDSL-type esterase/lipase protein) gene family was divided into four clades. The phylogenetic analysis, combined with protein motif architectures, and expression profiling were used to predict the roles AtGELP genes. To investigate the physical roles of the AtGELP gene family, we successfully screened 88 AtGELP T-DNA knockout lines for 54 AtGELP genes from 199 putative SALK T-DNA mutants. Transgenic plants of AtGELP genes were used to elucidate the phenotypic characteristics in various developmental stages or stress conditions. Our results suggest that the AtGELP genes have diverse physical functions such as affecting the germination rate and early growth of seedlings subjected to high concentrations of glucose, or being involved in biotic stress responses.
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Affiliation(s)
- Chia-Ping Lai
- Department of Food and Beverage Management, Far East University, Tainan, Taiwan, Republic of China
| | - Li-Min Huang
- Institute of Biotechnology, National Cheng Kung University, Tainan, Taiwan, Republic of China
- Academia Sinica Biotechnology Center in Southern Taiwan, Tainan, Taiwan, Republic of China
| | - Long-Fang O Chen
- Institute of Biotechnology, National Cheng Kung University, Tainan, Taiwan, Republic of China
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan, Republic of China
| | - Ming-Tsair Chan
- Institute of Biotechnology, National Cheng Kung University, Tainan, Taiwan, Republic of China
- Agricultural Biotechnology Research Center, Academia Sinica, Nankang, Taipei, Taiwan, Republic of China
- Academia Sinica Biotechnology Center in Southern Taiwan, Tainan, Taiwan, Republic of China
| | - Jei-Fu Shaw
- Institute of Biotechnology, National Cheng Kung University, Tainan, Taiwan, Republic of China.
- Department of Biological Science and Technology, I-Shou University, Kaohsiung, Taiwan, Republic of China.
- Agricultural Biotechnology Research Center, Academia Sinica, Nankang, Taipei, Taiwan, Republic of China.
- Agricultural Biotechnology Center, National Chung Hsing University, Taichung, Taiwan, Republic of China.
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22
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Shah M, Teixeira FM, Soares EL, Soares AA, Carvalho PC, Domont GB, Thornburg RW, Nogueira FCS, Campos FAP. Time-course proteome analysis of developing extrafloral nectaries of Ricinus communis. Proteomics 2016; 16:629-33. [PMID: 26683443 DOI: 10.1002/pmic.201500292] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2015] [Revised: 10/30/2015] [Accepted: 11/24/2015] [Indexed: 11/05/2022]
Abstract
Floral and extrafloral nectaries are unique organs that secrete energy rich chemical components, but their contribution for nectar production is largely unknown. Here, we present the first comparative proteome dataset of four developmental stages of the extrafloral nectaries from castor plant (Ricinus communis), an important biofuel crop. Respectively, from stage I-IV, we identified 626, 613, 449 and 356 proteins, respectively, summing up 882 nonredundant proteins. Surprisingly, we identified two isoforms of the potent toxin ricin, indicating that ricin expression is not limited to seeds, but it may serve a general defense purpose for the castor plant. To date, this is the most complete dataset of proteins either from floral or extrafloral nectaries, thus contributing to lay the foundations for investigations on their ecological and evolutionary importance.
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Affiliation(s)
- Mohibullah Shah
- Department of Biochemistry and Molecular Biology, Federal University of Ceara, Fortaleza, Brazil
| | - Fabiano M Teixeira
- Department of Biochemistry and Molecular Biology, Federal University of Ceara, Fortaleza, Brazil
| | - Emanoella L Soares
- Department of Biochemistry and Molecular Biology, Federal University of Ceara, Fortaleza, Brazil
| | - Arlete A Soares
- Department of Biology, Federal University of Ceara, Fortaleza, Brazil
| | - Paulo C Carvalho
- Laboratory for Proteomics and Protein Engineering, Carlos Chagas Institute, Fiocruz, Paraná, Brazil
| | - Gilberto B Domont
- Proteomic Unit, Institute of Chemistry, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Robert W Thornburg
- Department of Biochemistry, Biophysics, & Molecular Biology, Iowa State University, Ames, IA, USA
| | - Fábio C S Nogueira
- Proteomic Unit, Institute of Chemistry, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Francisco A P Campos
- Department of Biochemistry and Molecular Biology, Federal University of Ceara, Fortaleza, Brazil
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23
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Zhou Y, Li M, Zhao F, Zha H, Yang L, Lu Y, Wang G, Shi J, Chen J. Floral Nectary Morphology and Proteomic Analysis of Nectar of Liriodendron tulipifera Linn. FRONTIERS IN PLANT SCIENCE 2016; 7:826. [PMID: 27379122 PMCID: PMC4905952 DOI: 10.3389/fpls.2016.00826] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2016] [Accepted: 05/26/2016] [Indexed: 05/08/2023]
Abstract
Nectar is a primary nutrient reward for a variety of pollinators. Recent studies have demonstrated that nectar also has defensive functions against microbial invasion. In this study, the Liriodendron tulipifera nectary was first examined by scanning electron microscopy, and then the nectar was analyzed by two-dimensional gel electrophoresis and liquid chromatography-tandem mass spectrometry, which led to identification of 42 nectar proteins involved in various biological functions. Bioinformatic analysis was then performed on an identified novel rubber elongation factor (REF) protein in L. tulipifera nectar. The protein was particularly abundant, representing ∼60% of the major bands of 31 to 43 kDa, and showed high, stage-specific expression in nectary tissue. The REF family proteins are the major allergens in latex. We propose that REF in L. tulipifera nectar has defensive characteristics against microorganisms.
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Affiliation(s)
- Yanwei Zhou
- Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry UniversityNanjing, China
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry UniversityNanjing, China
| | - Meiping Li
- Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry UniversityNanjing, China
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry UniversityNanjing, China
| | - Fangfang Zhao
- Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry UniversityNanjing, China
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry UniversityNanjing, China
| | - Hongguang Zha
- College of Life and Environment Science, Huangshan UniversityHuangshan, China
| | - Liming Yang
- School of Life science, Huaiyin Normal UniversityHuai’an, China
| | - Ye Lu
- Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry UniversityNanjing, China
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry UniversityNanjing, China
| | - Guangping Wang
- Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry UniversityNanjing, China
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry UniversityNanjing, China
| | - Jisen Shi
- Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry UniversityNanjing, China
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry UniversityNanjing, China
- *Correspondence: Jinhui Chen, ; Jisen Shi,
| | - Jinhui Chen
- Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry UniversityNanjing, China
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry UniversityNanjing, China
- *Correspondence: Jinhui Chen, ; Jisen Shi,
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24
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An insight into plant lipase research – challenges encountered. Protein Expr Purif 2014; 95:13-21. [DOI: 10.1016/j.pep.2013.11.006] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2013] [Revised: 11/13/2013] [Accepted: 11/15/2013] [Indexed: 11/22/2022]
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Rejón JD, Delalande F, Schaeffer-Reiss C, Carapito C, Zienkiewicz K, de Dios Alché J, Rodríguez-García MI, Van Dorsselaer A, Castro AJ. Proteomics profiling reveals novel proteins and functions of the plant stigma exudate. JOURNAL OF EXPERIMENTAL BOTANY 2013; 64:5695-705. [PMID: 24151302 PMCID: PMC3871823 DOI: 10.1093/jxb/ert345] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Proteomic analysis of the stigmatic exudate of Lilium longiflorum and Olea europaea led to the identification of 51 and 57 proteins, respectively, most of which are described for the first time in this secreted fluid. These results indicate that the stigmatic exudate is an extracellular environment metabolically active, participating in at least 80 different biological processes and 97 molecular functions. The stigma exudate showed a markedly catabolic profile and appeared to possess the enzyme machinery necessary to degrade large polysaccharides and lipids secreted by papillae to smaller units, allowing their incorporation into the pollen tube during pollination. It may also regulate pollen-tube growth in the pistil through the selective degradation of tube-wall components. Furthermore, some secreted proteins were involved in pollen-tube adhesion and orientation, as well as in programmed cell death of the papillae cells in response to either compatible pollination or incompatible pollen rejection. Finally, the results also revealed a putative cross-talk between genetic programmes regulating stress/defence and pollination responses in the stigma.
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Affiliation(s)
- Juan David Rejón
- Departamento de Bioquímica, Biología Celular y Molecular de Plantas, Estación Experimental del Zaidín (C.S.I.C.), C/ Profesor Albareda 1,18008 Granada, Spain
- These authors contributed equally to this work
| | - François Delalande
- Laboratoire de Spectrométrie de Masse Bio-Organique, IPHC-DSA, UdS, CNRS, UMR 7178, 25 rue Becquerel, 67087 Strasbourg, France
- These authors contributed equally to this work
| | - Christine Schaeffer-Reiss
- Laboratoire de Spectrométrie de Masse Bio-Organique, IPHC-DSA, UdS, CNRS, UMR 7178, 25 rue Becquerel, 67087 Strasbourg, France
| | - Christine Carapito
- Laboratoire de Spectrométrie de Masse Bio-Organique, IPHC-DSA, UdS, CNRS, UMR 7178, 25 rue Becquerel, 67087 Strasbourg, France
| | - Krzysztof Zienkiewicz
- Departamento de Bioquímica, Biología Celular y Molecular de Plantas, Estación Experimental del Zaidín (C.S.I.C.), C/ Profesor Albareda 1,18008 Granada, Spain
- Department of Cell Biology, Institute of General and Molecular Biology, Nicolaus Copernicus University, Gargarina 9, 87–100 Toruń, Poland
| | - Juan de Dios Alché
- Departamento de Bioquímica, Biología Celular y Molecular de Plantas, Estación Experimental del Zaidín (C.S.I.C.), C/ Profesor Albareda 1,18008 Granada, Spain
| | - María Isabel Rodríguez-García
- Departamento de Bioquímica, Biología Celular y Molecular de Plantas, Estación Experimental del Zaidín (C.S.I.C.), C/ Profesor Albareda 1,18008 Granada, Spain
| | - Alain Van Dorsselaer
- Laboratoire de Spectrométrie de Masse Bio-Organique, IPHC-DSA, UdS, CNRS, UMR 7178, 25 rue Becquerel, 67087 Strasbourg, France
| | - Antonio Jesús Castro
- Departamento de Bioquímica, Biología Celular y Molecular de Plantas, Estación Experimental del Zaidín (C.S.I.C.), C/ Profesor Albareda 1,18008 Granada, Spain
- * To whom correspondence should be addressed. E-mail:
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Jacquemyn H, Lenaerts M, Tyteca D, Lievens B. Microbial diversity in the floral nectar of seven Epipactis (Orchidaceae) species. Microbiologyopen 2013; 2:644-58. [PMID: 23836678 PMCID: PMC3948608 DOI: 10.1002/mbo3.103] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2013] [Revised: 05/23/2013] [Accepted: 05/28/2013] [Indexed: 11/16/2022] Open
Abstract
Floral nectar of animal-pollinated plants is commonly infested with microorganisms, yet little is known about the microorganisms inhabiting the floral nectar of orchids. In this study, we investigated microbial communities occurring in the floral nectar of seven Epipactis (Orchidaceae) species. Culturable bacteria and yeasts were isolated and identified by partially sequencing the small subunit (SSU) ribosomal RNA (rRNA) gene and the D1/D2 domains of the large subunit (LSU) rRNA gene, respectively. Using three different culture media, we found that bacteria were common inhabitants of the floral nectar of Epipactis. The most widely distributed bacterial operational taxonomic units (OTUs) in nectar of Epipactis were representatives of the family of Enterobacteriaceae, with an unspecified Enterobacteriaceae bacterium as the most common. In contrast to previous studies investigating microbial communities in floral nectar, very few yeast species (mainly of the genus Cryptococcus) were observed, and most of them occurred in very low densities. Total OTU richness (i.e., the number of bacterial and yeast OTUs per orchid species) varied between 4 and 20. Cluster analysis revealed that microbial communities of allogamous species differed from those of autogamous and facultatively autogamous species. This study extends previous efforts to identify microbial communities in floral nectar and indicates that the floral nectar of the orchids investigated mainly contained bacterial communities with moderate phylogenetic diversity.
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MESH Headings
- Bacteria/classification
- Bacteria/genetics
- Bacteria/growth & development
- Bacteria/isolation & purification
- Biodiversity
- Cluster Analysis
- DNA, Bacterial/chemistry
- DNA, Bacterial/genetics
- DNA, Fungal/chemistry
- DNA, Fungal/genetics
- DNA, Ribosomal/chemistry
- DNA, Ribosomal/genetics
- Fungi/classification
- Fungi/genetics
- Fungi/growth & development
- Fungi/isolation & purification
- Genes, rRNA
- Molecular Sequence Data
- Orchidaceae/microbiology
- Phylogeny
- Plant Nectar
- RNA, Bacterial/genetics
- RNA, Fungal/genetics
- RNA, Ribosomal, 16S/genetics
- RNA, Ribosomal, 18S/genetics
- Sequence Analysis, DNA
- Sequence Homology, Nucleic Acid
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Affiliation(s)
- Hans Jacquemyn
- Plant Conservation and Population Biology Biology Department, KU LeuvenKasteelpark Arenberg 31, B-3001, Heverlee, Belgium
| | - Marijke Lenaerts
- Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), Thomas More University College, De Nayer Campus Department of Microbial and Molecular Systems (MS), KU Leuven AssociationB-2860, Sint-Katelijne-Waver, Belgium
- Scientia Terrae Research InstituteB-2860 Sint-Katelijne-Waver, Belgium
| | - Daniel Tyteca
- Biodiversity Research Centre Earth and Life Institute, Université catholique de LouvainB-1348, Louvain-la-Neuve, Belgium
| | - Bart Lievens
- Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), Thomas More University College, De Nayer Campus Department of Microbial and Molecular Systems (MS), KU Leuven AssociationB-2860, Sint-Katelijne-Waver, Belgium
- Scientia Terrae Research InstituteB-2860 Sint-Katelijne-Waver, Belgium
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Seo PJ, Wielsch N, Kessler D, Svatos A, Park CM, Baldwin IT, Kim SG. Natural variation in floral nectar proteins of two Nicotiana attenuata accessions. BMC PLANT BIOLOGY 2013; 13:101. [PMID: 23848992 PMCID: PMC3728157 DOI: 10.1186/1471-2229-13-101] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2013] [Accepted: 07/10/2013] [Indexed: 05/22/2023]
Abstract
BACKGROUND Floral nectar (FN) contains not only energy-rich compounds to attract pollinators, but also defense chemicals and several proteins. However, proteomic analysis of FN has been hampered by the lack of publically available sequence information from nectar-producing plants. Here we used next-generation sequencing and advanced proteomics to profile FN proteins in the opportunistic outcrossing wild tobacco, Nicotiana attenuata. RESULTS We constructed a transcriptome database of N. attenuata and characterized its nectar proteome using LC-MS/MS. The FN proteins of N. attenuata included nectarins, sugar-cleaving enzymes (glucosidase, galactosidase, and xylosidase), RNases, pathogen-related proteins, and lipid transfer proteins. Natural variation in FN proteins of eleven N. attenuata accessions revealed a negative relationship between the accumulation of two abundant proteins, nectarin1b and nectarin5. In addition, microarray analysis of nectary tissues revealed that protein accumulation in FN is not simply correlated with the accumulation of transcripts encoding FN proteins and identified a group of genes that were specifically expressed in the nectary. CONCLUSIONS Natural variation of identified FN proteins in the ecological model plant N. attenuata suggests that nectar chemistry may have a complex function in plant-pollinator-microbe interactions.
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Affiliation(s)
- Pil Joon Seo
- Department of Chemistry, Chonbuk National University, Jeonju, 561-756, Korea
| | - Natalie Wielsch
- Mass Spectrometry/Proteomics Research Group, Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, Jena, D-07745, Germany
| | - Danny Kessler
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, Jena, D-07745, Germany
| | - Ales Svatos
- Mass Spectrometry/Proteomics Research Group, Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, Jena, D-07745, Germany
| | - Chung-Mo Park
- Molecular Signaling Laboratory, Department of Chemistry, Seoul National University, Seoul, 151-742, Korea
| | - Ian T Baldwin
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, Jena, D-07745, Germany
| | - Sang-Gyu Kim
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, Jena, D-07745, Germany
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Zha HG, Liu T, Zhou JJ, Sun H. MS-desi, a desiccation-related protein in the floral nectar of the evergreen velvet bean (Mucuna sempervirens Hemsl): molecular identification and characterization. PLANTA 2013; 238:77-89. [PMID: 23568404 DOI: 10.1007/s00425-013-1876-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2012] [Accepted: 03/27/2013] [Indexed: 05/11/2023]
Abstract
Plant desiccation-related proteins (DRPs) were first identified as pcC13-62 from the resurrection plant Craterostigma plantagineum and it has been suggested they are involved in plant desiccation tolerance. We identified and characterized a plant DRP, which we called MS-desi, in the floral nectar of a subtropical bean species, Mucuna sempervirens (MS). MS-desi is a major nectar protein (nectarin) of the bean plant and expresses exclusively in the stylopodium, where the nectary is located. The full-length MS-desi gene encodes for a protein of 306 amino acids with a molecular mass of 33,248 Da, and possesses a ferritin-like domain and a signal peptide of 30 amino acids. Structural and phylogenetic analysis demonstrated MS-desi has high similarity to members of the plant DRPs, including pcC 13-62 protein. MS-desi has a similar hydropathy profile to that of pcC13-62 with a grand average of hydropathy index of 0.130 for MS-desi and 0.106 for pcC13-62 protein, which is very different from those of dehydrins and late embryogenesis abundant proteins. The protein's secondary structures, both predicted from the amino acid sequence and directly analysed by far UV circular dichroism, showed that MS-desi is mainly composed of alpha helices and is relatively temperature dependent. The structure change is reversible within a wide range of temperatures. Purified MS-desi and raw MS floral nectar showed dose-dependent citrate synthase inhibition activity, but insensitivity to lactate dehydrogenase, suggesting that, unlike dehydrins, it does not act as a chaperone. The overall results constitute, to our knowledge, the first study on a desiccation-related protein in plant floral nectar.
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Affiliation(s)
- Hong-Guang Zha
- Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650204, China
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Muralidharan M, Buss K, Larrimore KE, Segerson NA, Kannan L, Mor TS. The Arabidopsis thaliana ortholog of a purported maize cholinesterase gene encodes a GDSL-lipase. PLANT MOLECULAR BIOLOGY 2013; 81:565-76. [PMID: 23430565 PMCID: PMC3769184 DOI: 10.1007/s11103-013-0021-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2012] [Accepted: 02/01/2013] [Indexed: 05/09/2023]
Abstract
Acetylcholinesterase is an enzyme that is intimately associated with regulation of synaptic transmission in the cholinergic nervous system and in neuromuscular junctions of animals. However the presence of cholinesterase activity has been described also in non-metazoan organisms such as slime molds, fungi and plants. More recently, a gene purportedly encoding for acetylcholinesterase was cloned from maize. We have cloned the Arabidopsis thaliana homolog of the Zea mays gene, At3g26430, and studied its biochemical properties. Our results indicate that the protein encoded by the gene exhibited lipase activity with preference to long chain substrates but did not hydrolyze choline esters. The At3g26430 protein belongs to the SGNH clan of serine hydrolases, and more specifically to the GDS(L) lipase family.
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Escalante-Pérez M, Jaborsky M, Reinders J, Kurzai O, Hedrich R, Ache P. Poplar extrafloral nectar is protected against plant and human pathogenic fungus. MOLECULAR PLANT 2012; 5:1157-1159. [PMID: 22859733 DOI: 10.1093/mp/sss072] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
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Chepyshko H, Lai CP, Huang LM, Liu JH, Shaw JF. Multifunctionality and diversity of GDSL esterase/lipase gene family in rice (Oryza sativa L. japonica) genome: new insights from bioinformatics analysis. BMC Genomics 2012; 13:309. [PMID: 22793791 PMCID: PMC3412167 DOI: 10.1186/1471-2164-13-309] [Citation(s) in RCA: 116] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2011] [Accepted: 07/15/2012] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND GDSL esterases/lipases are a newly discovered subclass of lipolytic enzymes that are very important and attractive research subjects because of their multifunctional properties, such as broad substrate specificity and regiospecificity. Compared with the current knowledge regarding these enzymes in bacteria, our understanding of the plant GDSL enzymes is very limited, although the GDSL gene family in plant species include numerous members in many fully sequenced plant genomes. Only two genes from a large rice GDSL esterase/lipase gene family were previously characterised, and the majority of the members remain unknown. In the present study, we describe the rice OsGELP (Oryza sativa GDSL esterase/lipase protein) gene family at the genomic and proteomic levels, and use this knowledge to provide insights into the multifunctionality of the rice OsGELP enzymes. RESULTS In this study, an extensive bioinformatics analysis identified 114 genes in the rice OsGELP gene family. A complete overview of this family in rice is presented, including the chromosome locations, gene structures, phylogeny, and protein motifs. Among the OsGELPs and the plant GDSL esterase/lipase proteins of known functions, 41 motifs were found that represent the core secondary structure elements or appear specifically in different phylogenetic subclades. The specification and distribution of identified putative conserved clade-common and -specific peptide motifs, and their location on the predicted protein three dimensional structure may possibly signify their functional roles. Potentially important regions for substrate specificity are highlighted, in accordance with protein three-dimensional model and location of the phylogenetic specific conserved motifs. The differential expression of some representative genes were confirmed by quantitative real-time PCR. The phylogenetic analysis, together with protein motif architectures, and the expression profiling were analysed to predict the possible biological functions of the rice OsGELP genes. CONCLUSIONS Our current genomic analysis, for the first time, presents fundamental information on the organization of the rice OsGELP gene family. With combination of the genomic, phylogenetic, microarray expression, protein motif distribution, and protein structure analyses, we were able to create supported basis for the functional prediction of many members in the rice GDSL esterase/lipase family. The present study provides a platform for the selection of candidate genes for further detailed functional study.
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Affiliation(s)
- Hanna Chepyshko
- Department of Food Science and Biotechnology, National Chung Hsing University, Taichung, Taiwan, 402, ROC
| | - Chia-Ping Lai
- Department of Food and Beverage Management, Far East University, Tainan, Taiwan, 74448, ROC
| | - Li-Ming Huang
- Institute of Biotechnology, National Cheng Kung University, Tainan, Taiwan, 701, ROC
| | - Jyung-Hurng Liu
- Institute of Genomics and Bioinformatics, National Chung Hsing University, Taichung, Taiwan, 40227, ROC
| | - Jei-Fu Shaw
- Department of Food Science and Biotechnology, National Chung Hsing University, Taichung, Taiwan, 402, ROC
- Department of Biological Science and Technology, I-Shou University, Kaohsiung, Taiwan, 84001, ROC
- Agricultural Biotechnology Center, National Chung Hsing University, Taichung, Taiwan, 40227, ROC
- Agricultural Biotechnology Research Center, Academia Sinica, Nankang, Taiwan, 115, ROC
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Bender R, Klinkenberg P, Jiang Z, Bauer B, Karypis G, Nguyen N, Perera MAD, Nikolau BJ, Carter CJ. Functional genomics of nectar production in the Brassicaceae. FLORA - MORPHOLOGY, DISTRIBUTION, FUNCTIONAL ECOLOGY OF PLANTS 2012. [PMID: 0 DOI: 10.1016/j.flora.2012.06.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
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Alvarez-Pérez S, Herrera CM, de Vega C. Zooming-in on floral nectar: a first exploration of nectar-associated bacteria in wild plant communities. FEMS Microbiol Ecol 2012; 80:591-602. [PMID: 22324904 DOI: 10.1111/j.1574-6941.2012.01329.x] [Citation(s) in RCA: 96] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2011] [Revised: 01/31/2012] [Accepted: 01/31/2012] [Indexed: 11/29/2022] Open
Abstract
Floral nectar of some animal-pollinated plants usually harbours highly adapted yeast communities which can profoundly alter nectar characteristics and, therefore, potentially have significant impacts on plant reproduction through their effects on insect foraging behaviour. Bacteria have also been occasionally observed in floral nectar, but their prevalence, phylogenetic diversity and ecological role within plant-pollinator-yeast systems remains unclear. Here we present the first reported survey of bacteria in floral nectar from a natural plant community. Culturable bacteria occurring in a total of 71 nectar samples collected from 27 South African plant species were isolated and identified by 16S rRNA gene sequencing. Rarefaction-based analyses were used to assess operational taxonomic units (OTUs) richness at the plant community level using nectar drops as sampling units. Our results showed that bacteria are common inhabitants of floral nectar of South African plants (53.5% of samples yielded growth), and their communities are characterized by low species richness (18 OTUs at a 16S rRNA gene sequence dissimilarity cut-off of 3%) and moderate phylogenetic diversity, with most isolates belonging to the Gammaproteobacteria. Furthermore, isolates showed osmotolerance, catalase activity and the ability to grow under microaerobiosis, three traits that might help bacteria to overcome important factors limiting their survival and/or growth in nectar.
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Affiliation(s)
- Sergio Alvarez-Pérez
- Estación Biológica de Doñana, Consejo Superior de Investigaciones Científicas, Sevilla, Spain.
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Zha HG, Flowers VL, Yang M, Chen LY, Sun H. Acidic α-galactosidase is the most abundant nectarin in floral nectar of common tobacco (Nicotiana tabacum). ANNALS OF BOTANY 2012; 109:735-45. [PMID: 22271925 PMCID: PMC3286286 DOI: 10.1093/aob/mcr321] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2011] [Accepted: 12/01/2011] [Indexed: 05/02/2023]
Abstract
BACKGROUND AND AIMS To date, most floral nectarins (nectar proteins) are reported to function in nectar defence, particularly for insect-pollinated outcrossing species. We compared nectarin composition and abundance in selfing common tobacco (Nicotiana tobaccum) with outcrossing ornamental tobacco plants to elucidate the functional difference of nectarins in different reproductive systems. METHODS Common tobacco (CT) nectarins were separated by SDS-PAGE and the N terminus of the most abundant nectarin was sequenced via Edman degradation. The full-length nectarin gene was amplified and cloned from genomic DNA and mRNA with hiTail-PCR and RACE (rapid amplification of cDNA ends), and expression patterns were then investigated in different tissues using semi-quantitative reverse transcriptase PCR. Additionally, high-performance liquid chromatography and enzymatic analyses of nectar sugar composition, and other biochemical traits and functions of the novel nectarin were studied. KEY RESULTS The most abundant nectarin in CT nectar is an acidic α-galactosidase, here designated NTα-Gal. This compound has a molecular mass of 40 013 Da and a theoretical pI of 5·33. NTα-Gal has a conserved α-Gal characteristic signature, encodes a mature protein of 364 amino acids and is expressed in different organs. Compared with 27 other melliferous plant species from different families, CT floral nectar demonstrated the highest α-Gal activity, which is inhibited by d-galactose. Raffinose family oligosaccharides were not detected in CT nectar, indicating that NTα-Gal does not function in post-secretory hydrolysis. Moreover, tobacco plant fruits did not develop intact skin with galactose inhibition of NTα-Gal activity in nectar, suggesting that NTα-Gal induces cell-wall surface restructuring during the initial stages of fruit development. CONCLUSIONS α-Gal was the most abundant nectarin in selfing CT plants, but was not detected in the nectar of strictly outcrossing sister tobacco species. No function was demonstrated in antimicrobial defence. Therefore, floral nectarins in selfing species maintain their functional significance in reproductive organ development.
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Affiliation(s)
- Hong-Guang Zha
- Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650204, China
| | - V. Lynn Flowers
- Department of Science, Tulane University, New Orleans, LA 70118, USA
| | - Min Yang
- Department of Biochemistry and Molecular Biology, Shanghai Medical College, Fudan University, Shanghai 200032, China
| | - Ling-Yang Chen
- Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650204, China
| | - Hang Sun
- Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650204, China
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36
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Nectar Secretion: Its Ecological Context and Physiological Regulation. SIGNALING AND COMMUNICATION IN PLANTS 2012. [DOI: 10.1007/978-3-642-23047-9_9] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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Nepi M, Bini L, Bianchi L, Puglia M, Abate M, Cai G. Xylan-degrading enzymes in male and female flower nectar of Cucurbita pepo. ANNALS OF BOTANY 2011; 108:521-7. [PMID: 21813563 PMCID: PMC3158684 DOI: 10.1093/aob/mcr165] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
BACKGROUND AND AIMS Nectar is a very complex mixture of substances. Some components (sugars and amino acids) are considered primary alimentary rewards for animals and have been investigated and characterized in numerous species for many years. In contrast, nectar proteins have been the subject of few studies and little is known of their function. Only very recently have detailed studies and characterization of nectar proteins been undertaken, and then for only a very few species. This current work represents a first step in the identification of a protein profile for the floral nectar of Cucurbita pepo. In this regard, the species studied is of particular interest in that it is monoecious with unisexual flowers and, consequently, it is possible that nectar proteins derived from male and female flowers may differ. METHODS Manually excised spots from two-dimensional (2-D) electrophoresis were subjected to in-gel protein digestion. The resulting peptides were sequenced using nanoscale LC-ESI/MS-MS (liquid chromatography-electrospray ionization/tandem mass spectrometry). An MS/MS ions search was carried out in Swiss-Prot and NCBInr databases using MASCOT software. KEY RESULTS Two-dimensional electrophoresis revealed a total of 24 spots and a different protein profile for male and female flower nectar. Four main proteins recognized by 2-D electrophoresis most closely resemble β-d-xylosidases from Arabidopsis thaliana and have some homology to a β-d-xylosidase from Medicago varia. They were present in similar quantities in male and female flowers and had the same molecular weight, but with slightly different isoelectric points. CONCLUSIONS A putative function for xylosidases in floral nectar of C. pepo is proposed, namely that they may be involved in degrading the oligosaccharides released by the nectary cell walls in response to hydrolytic enzymes produced by invading micro-organisms. Several types of oligosaccharides have been reported to increase the pathogenic potential of micro-organisms. Thus, it is possible that such a mechanism may reduce the virulence of pathogens present in nectar.
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Affiliation(s)
- M Nepi
- BIOCONNET, Biodiversity and Conservation Network, Department of Environmental Sciences G. Sarfatti, University of Siena, Via Mattioli 4, 53100 Siena, Italy.
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Heil M. Nectar: generation, regulation and ecological functions. TRENDS IN PLANT SCIENCE 2011; 16:191-200. [PMID: 21345715 DOI: 10.1016/j.tplants.2011.01.003] [Citation(s) in RCA: 260] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2010] [Revised: 01/05/2011] [Accepted: 01/14/2011] [Indexed: 05/23/2023]
Abstract
Nectar contains water, sugars and amino acids to attract pollinators and defenders and is protected from nectar robbers and microorganisms by secondary compounds and antimicrobial proteins. Floral and extrafloral nectar secretion can be induced by jasmonic acid, it is often adjusted to consumer identity and consumption rate and depends on invertase activity. Invertases are likely to play at least three roles: the uploading of sucrose from the phloem, carbohydrate mobilization during active secretion and the postsecretory adjustment of the sucrose:hexose ratio of nectar. However, it remains to be studied how plants produce and secrete non-carbohydrate components. More research is needed to understand how plants produce nectar, the most important mediator of their interactions with mutualistic animals.
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Affiliation(s)
- Martin Heil
- Departamento de Ingeniería Genética, CINVESTAV - Irapuato, Km. 9.6 Libramiento Norte, CP 36821, Irapuato, Guanajuato, México.
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Volokita M, Rosilio-Brami T, Rivkin N, Zik M. Combining Comparative Sequence and Genomic Data to Ascertain Phylogenetic Relationships and Explore the Evolution of the Large GDSL-Lipase Family in Land Plants. Mol Biol Evol 2010; 28:551-65. [DOI: 10.1093/molbev/msq226] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Hillwig MS, Liu X, Liu G, Thornburg RW, MacIntosh GC. Petunia nectar proteins have ribonuclease activity. JOURNAL OF EXPERIMENTAL BOTANY 2010; 61:2951-65. [PMID: 20460362 PMCID: PMC2892141 DOI: 10.1093/jxb/erq119] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2009] [Revised: 03/31/2010] [Accepted: 04/09/2010] [Indexed: 05/22/2023]
Abstract
Plants requiring an insect pollinator often produce nectar as a reward for the pollinator's visitations. This rich secretion needs mechanisms to inhibit microbial growth. In Nicotiana spp. nectar, anti-microbial activity is due to the production of hydrogen peroxide. In a close relative, Petunia hybrida, limited production of hydrogen peroxide was found; yet petunia nectar still has anti-bacterial properties, suggesting that a different mechanism may exist for this inhibition. The nectar proteins of petunia plants were compared with those of ornamental tobacco and significant differences were found in protein profiles and function between these two closely related species. Among those proteins, RNase activities unique to petunia nectar were identified. The genes corresponding to four RNase T2 proteins from Petunia hybrida that show unique expression patterns in different plant tissues were cloned. Two of these enzymes, RNase Phy3 and RNase Phy4 are unique among the T2 family and contain characteristics similar to both S- and S-like RNases. Analysis of amino acid patterns suggest that these proteins are an intermediate between S- and S-like RNases, and support the hypothesis that S-RNases evolved from defence RNases expressed in floral parts. This is the first report of RNase activities in nectar.
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Affiliation(s)
| | | | | | - Robert W. Thornburg
- To whom correspondence should be addressed: E-mail: Robert Thornburg: ; Gustavo MacIntosh:
| | - Gustavo C. MacIntosh
- To whom correspondence should be addressed: E-mail: Robert Thornburg: ; Gustavo MacIntosh:
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Agee AE, Surpin M, Sohn EJ, Girke T, Rosado A, Kram BW, Carter C, Wentzell AM, Kliebenstein DJ, Jin HC, Park OK, Jin H, Hicks GR, Raikhel NV. MODIFIED VACUOLE PHENOTYPE1 is an Arabidopsis myrosinase-associated protein involved in endomembrane protein trafficking. PLANT PHYSIOLOGY 2010; 152:120-32. [PMID: 19880612 PMCID: PMC2799351 DOI: 10.1104/pp.109.145078] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
We identified an Arabidopsis (Arabidopsis thaliana) ethyl methanesulfonate mutant, modified vacuole phenotype1-1 (mvp1-1), in a fluorescent confocal microscopy screen for plants with mislocalization of a green fluorescent protein-delta tonoplast intrinsic protein fusion. The mvp1-1 mutant displayed static perinuclear aggregates of the reporter protein. mvp1 mutants also exhibited a number of vacuole-related phenotypes, as demonstrated by defects in growth, utilization of stored carbon, gravitropic response, salt sensitivity, and specific susceptibility to the fungal necrotroph Alternaria brassicicola. Similarly, crosses with other endomembrane marker fusions identified mislocalization to aggregate structures, indicating a general defect in protein trafficking. Map-based cloning showed that the mvp1-1 mutation altered a gene encoding a putative myrosinase-associated protein, and glutathione S-transferase pull-down assays demonstrated that MVP1 interacted specifically with the Arabidopsis myrosinase protein, THIOGLUCOSIDE GLUCOHYDROLASE2 (TGG2), but not TGG1. Moreover, the mvp1-1 mutant showed increased nitrile production during glucosinolate hydrolysis, suggesting that MVP1 may play a role in modulation of myrosinase activity. We propose that MVP1 is a myrosinase-associated protein that functions, in part, to correctly localize the myrosinase TGG2 and prevent inappropriate glucosinolate hydrolysis that could generate cytotoxic molecules.
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Ruhlmann JM, Kram BW, Carter CJ. CELL WALL INVERTASE 4 is required for nectar production in Arabidopsis. JOURNAL OF EXPERIMENTAL BOTANY 2009; 61:395-404. [PMID: 19861655 PMCID: PMC2803206 DOI: 10.1093/jxb/erp309] [Citation(s) in RCA: 78] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2009] [Revised: 09/30/2009] [Accepted: 10/02/2009] [Indexed: 05/18/2023]
Abstract
To date, no genes have been reported to directly affect the de novo production of floral nectar. In an effort to identify genes involved in nectar production, the Affymetrix((R)) ATH1 GeneChip was previously used to examine global gene expression profiles in Arabidopsis thaliana nectaries. One of the genes displaying highly enriched expression in nectaries was CELL WALL INVERTASE 4 (AtCWINV4, At2g36190), which encodes an enzyme that putatively catalyses the hydrolysis of sucrose into glucose and fructose. RT-PCR was used to confirm the nectary-enriched expression of AtCWINV4, as well as an orthologue from Brassica rapa. To probe biological function, two independent Arabidopsis cwinv4 T-DNA mutants were isolated. Unlike wild-type plants, cwinv4 lines did not produce nectar. While overall nectary morphology appeared to be normal, cwinv4 flowers accumulated higher than normal levels of starch in the receptacle, but not within the nectaries themselves. Conversely, wild-type, but not cwinv4, nectarial stomata stained intensely for starch. Cell wall extracts prepared from mutant flowers displayed greatly reduced invertase activity when compared with wild-type plants, and cwinv4 flowers also accumulated significantly lower levels of total soluble sugar. Cumulatively, these results implicate CWINV4 as an absolutely required factor for nectar production in the Brassicaceae, specifically by maintaining constant sink status within nectaries, thus allowing them to accumulate the sugars necessary for nectar production. In addition, CWINV4 is probably responsible for the hexose-rich composition observed for many Brassicaceae nectars.
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Affiliation(s)
| | | | - Clay J. Carter
- Department of Biology, 1035 Kirby Dr, University of Minnesota Duluth, Duluth, MN 55812, USA
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Liu G, Ren G, Guirgis A, Thornburg RW. The MYB305 transcription factor regulates expression of nectarin genes in the ornamental tobacco floral nectary. THE PLANT CELL 2009; 21:2672-87. [PMID: 19783761 PMCID: PMC2768911 DOI: 10.1105/tpc.108.060079] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2008] [Revised: 07/28/2009] [Accepted: 08/26/2009] [Indexed: 05/18/2023]
Abstract
We have isolated and characterized the cDNA encoding the ornamental tobacco (Nicotiana langsdorffii X N. sanderae) homolog of the antirrhinum (Antirrhinum majus) MYB305. This transcription factor was robustly expressed at Stage 12 of nectary development but was only weakly expressed in the earlier Stage 6 nectaries. The ornamental tobacco MYB305 contains a conserved R2R3 MYB DNA binding domain with 76 amino acids in the activation domain. A green fluorescent protein-MYB305 fusion localized to nucleus of tobacco protoplasts and yeast one-hybrid assays demonstrated that it functions as a transcription activator. A conserved 23-amino acid C-terminal domain is required to activate gene expression. The coding region of the myb305 cDNA was expressed in Escherichia coli as a glutathione S-transferase fusion protein and was purified to homogeneity. This protein shows binding to two consensus MYB binding sites on the ornamental tobacco Nectarin I (nec1) promoter as well as to the single site located on the Nectarin V (nec5) promoter. Deletions of either of the binding sites from the nec1 promoter significantly reduced expression in nectary tissues. Temporally, MYB305 expression precedes that of nec1 and nec5, as would be expected if the MYB305 factor regulates expression of the nec1 and nec5 genes. Ectopic expression of MYB305 in foliage was able to induce expression of both nec1 and nec5, as well as two flavonoid biosynthetic genes in the foliage. Finally, RNA interference knockdown of MYB305 resulted in reduced expression of both nectarins and flavonoid biosynthetic genes. We conclude that expression of MYB305 regulates expression of the major nectarin genes in the floral nectary.
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Affiliation(s)
| | | | | | - Robert W. Thornburg
- Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, Iowa 50011
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Kram BW, Carter CJ. Arabidopsis thaliana as a model for functional nectary analysis. ACTA ACUST UNITED AC 2009; 22:235-46. [DOI: 10.1007/s00497-009-0112-5] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2009] [Accepted: 08/14/2009] [Indexed: 11/28/2022]
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Nepi M, von Aderkas P, Wagner R, Mugnaini S, Coulter A, Pacini E. Nectar and pollination drops: how different are they? ANNALS OF BOTANY 2009; 104:205-19. [PMID: 19477895 PMCID: PMC2710891 DOI: 10.1093/aob/mcp124] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2009] [Revised: 03/05/2009] [Accepted: 04/21/2009] [Indexed: 05/18/2023]
Abstract
BACKGROUND Pollination drops and nectars (floral nectars) are secretions related to plant reproduction. The pollination drop is the landing site for the majority of gymnosperm pollen, whereas nectar of angiosperm flowers represents a common nutritional resource for a large variety of pollinators. Extrafloral nectars also are known from all vascular plants, although among the gymnosperms they are restricted to the Gnetales. Extrafloral nectars are not generally involved in reproduction but serve as 'reward' for ants defending plants against herbivores (indirect defence). SCOPE Although very different in their task, nectars and pollination drops share some features, e.g. basic chemical composition and eventual consumption by animals. This has led some authors to call these secretions collectively nectar. Modern techniques that permit chemical analysis and protein characterization have very recently added important information about these sugary secretions that appear to be much more than a 'reward' for pollinating (floral nectar) and defending animals (extrafloral nectar) or a landing site for pollen (pollination drop). CONCLUSIONS Nectar and pollination drops contain sugars as the main components, but the total concentration and the relative proportions are different. They also contain amino acids, of which proline is frequently the most abundant. Proteomic studies have revealed the presence of common functional classes of proteins such as invertases and defence-related proteins in nectar (floral and extrafloral) and pollination drops. Invertases allow for dynamic rearrangement of sugar composition following secretion. Defence-related proteins provide protection from invasion by fungi and bacteria. Currently, only few species have been studied in any depth. The chemical composition of the pollination drop must be investigated in a larger number of species if eventual phylogenetic relationships are to be revealed. Much more information can be provided from further proteomic studies of both nectar and pollination drop that will contribute to the study of plant reproduction and evolution.
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Affiliation(s)
- Massimo Nepi
- Department of Environmental Sciences G. Sarfatti, University of Siena, Via Mattioli 4, Siena, Italy.
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Kram BW, Xu WW, Carter CJ. Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues. BMC PLANT BIOLOGY 2009; 9:92. [PMID: 19604393 PMCID: PMC2720969 DOI: 10.1186/1471-2229-9-92] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2009] [Accepted: 07/15/2009] [Indexed: 05/06/2023]
Abstract
BACKGROUND Many flowering plants attract pollinators by offering a reward of floral nectar. Remarkably, the molecular events involved in the development of nectaries, the organs that produce nectar, as well as the synthesis and secretion of nectar itself, are poorly understood. Indeed, to date, no genes have been shown to directly affect the de novo production or quality of floral nectar. To address this gap in knowledge, the ATH1 Affymetrix GeneChip array was used to systematically investigate the Arabidopsis nectary transcriptome to identify genes and pathways potentially involved in nectar production. RESULTS In this study, we identified a large number of genes differentially expressed between secretory lateral nectaries and non-secretory median nectary tissues, as well as between mature lateral nectaries (post-anthesis) and immature lateral nectaries (pre-anthesis). Expression within nectaries was also compared to thirteen non-nectary reference tissues, from which 270 genes were identified as being significantly upregulated in nectaries. The expression patterns of 14 nectary-enriched genes were also confirmed via RT PCR. Upon looking into functional groups of upregulated genes, pathways involved in gene regulation, carbohydrate metabolism, and lipid metabolism were particularly enriched in nectaries versus reference tissues. CONCLUSION A large number of genes preferentially expressed in nectaries, as well as between nectary types and developmental stages, were identified. Several hypotheses relating to mechanisms of nectar production and regulation thereof are proposed, and provide a starting point for reverse genetics approaches to determine molecular mechanisms underlying nectar synthesis and secretion.
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Affiliation(s)
- Brian W Kram
- Department of Biology, University of Minnesota Duluth, Duluth, MN 55812, USA
| | - Wayne W Xu
- Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, MN 55455, USA
| | - Clay J Carter
- Department of Biology, University of Minnesota Duluth, Duluth, MN 55812, USA
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Identification and biochemical characterization of a GDSL-motif carboxylester hydrolase from Carica papaya latex. Biochim Biophys Acta Mol Cell Biol Lipids 2009; 1791:1048-56. [PMID: 19555778 DOI: 10.1016/j.bbalip.2009.06.002] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2009] [Revised: 06/08/2009] [Accepted: 06/16/2009] [Indexed: 11/24/2022]
Abstract
An esterase (CpEst) showing high specific activities on tributyrin and short chain vinyl esters was obtained from Carica papaya latex after an extraction step with zwitterionic detergent and sonication, followed by gel filtration chromatography. Although the protein could not be purified to complete homogeneity due to its presence in high molecular mass aggregates, a major protein band with an apparent molecular mass of 41 kDa was obtained by SDS-PAGE. This material was digested with trypsin and the amino acid sequences of the tryptic peptides were determined by LC/ESI/MS/MS. These sequences were used to identify a partial cDNA (679 bp) from expressed sequence tags (ESTs) of C. papaya. Based upon EST sequences, a full-length gene was identified in the genome of C. papaya, with an open reading frame of 1029 bp encoding a protein of 343 amino acid residues, with a theoretical molecular mass of 38 kDa. From sequence analysis, CpEst was identified as a GDSL-motif carboxylester hydrolase belonging to the SGNH protein family and four potential N-glycosylation sites were identified. The putative catalytic triad was localised (Ser(35)-Asp(307)-His(310)) with the nucleophile serine being part of the GDSL-motif. A 3D-model of CpEst was built from known X-ray structures and sequence alignments and the catalytic triad was found to be exposed at the surface of the molecule, thus confirming the results of CpEst inhibition by tetrahydrolipstatin suggesting a direct accessibility of the inhibitor to the active site.
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