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Riznichenko GY, Belyaeva NE, Kovalenko IB, Antal TK, Goryachev SN, Maslakov AS, Plyusnina TY, Fedorov VA, Khruschev SS, Yakovleva OV, Rubin AB. Mathematical Simulation of Electron Transport in the Primary Photosynthetic Processes. BIOCHEMISTRY (MOSCOW) 2022; 87:1065-1083. [DOI: 10.1134/s0006297922100017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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2
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Riznichenko GY, Antal TK, Belyaeva NE, Khruschev SS, Kovalenko IB, Maslakov AS, Plyusnina TY, Fedorov VA, Rubin AB. Molecular, Brownian, kinetic and stochastic models of the processes in photosynthetic membrane of green plants and microalgae. Biophys Rev 2022; 14:985-1004. [PMID: 36124262 PMCID: PMC9481862 DOI: 10.1007/s12551-022-00988-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 07/25/2022] [Indexed: 10/15/2022] Open
Abstract
The paper presents the results of recent work at the Department of Biophysics of the Biological Faculty, Lomonosov Moscow State University on the kinetic and multiparticle modeling of processes in the photosynthetic membrane. The detailed kinetic models and the rule-based kinetic Monte Carlo models allow to reproduce the fluorescence induction curves and redox transformations of the photoactive pigment P700 in the time range from 100 ns to dozens of seconds and make it possible to reveal the role of individual carriers in their formation for different types of photosynthetic organisms under different illumination regimes, in the presence of inhibitors, under stress conditions. The fitting of the model curves to the experimental data quantifies the reaction rate constants that cannot be directly measured experimentally, including the non-radiative thermal relaxation reactions. We use the direct multiparticle models to explicitly describe the interactions of mobile photosynthetic carrier proteins with multienzyme complexes both in solution and in the biomembrane interior. An analysis of these models reveals the role of diffusion and electrostatic factors in the regulation of electron transport, the influence of ionic strength and pH of the cellular environment on the rate of electron transport reactions between carrier proteins. To describe the conformational intramolecular processes of formation of the final complex, in which the actual electron transfer occurs, we use the methods of molecular dynamics. The results obtained using kinetic and molecular models supplement our knowledge of the mechanisms of organization of the photosynthetic electron transport processes at the cellular and molecular levels.
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Affiliation(s)
- Galina Yu. Riznichenko
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1/12, 119234 Moscow, Russia
| | - Taras K. Antal
- Laboratory of Integrated Environmental Research, Pskov State University, Lenin Sq. 2, 180000 Pskov, Russia
| | - Natalia E. Belyaeva
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1/12, 119234 Moscow, Russia
| | - Sergey S. Khruschev
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1/12, 119234 Moscow, Russia
| | - Ilya B. Kovalenko
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1/12, 119234 Moscow, Russia
| | - Alexey S. Maslakov
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1/12, 119234 Moscow, Russia
| | - Tatyana Yu Plyusnina
- Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1/12, 119234 Moscow, Russia
| | - Vladimir A. Fedorov
- Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1/12, 119234 Moscow, Russia
| | - Andrey B. Rubin
- Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1/12, 119234 Moscow, Russia
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Zendonadi Dos Santos N, Piepho HP, Condorelli GE, Licieri Groli E, Newcomb M, Ward R, Tuberosa R, Maccaferri M, Fiorani F, Rascher U, Muller O. High-throughput field phenotyping reveals genetic variation in photosynthetic traits in durum wheat under drought. PLANT, CELL & ENVIRONMENT 2021; 44:2858-2878. [PMID: 34189744 DOI: 10.1111/pce.14136] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Revised: 04/14/2021] [Accepted: 06/13/2021] [Indexed: 06/13/2023]
Abstract
Chlorophyll fluorescence (ChlF) is a powerful non-invasive technique for probing photosynthesis. Although proposed as a method for drought tolerance screening, ChlF has not yet been fully adopted in physiological breeding, mainly due to limitations in high-throughput field phenotyping capabilities. The light-induced fluorescence transient (LIFT) sensor has recently been shown to reliably provide active ChlF data for rapid and remote characterisation of plant photosynthetic performance. We used the LIFT sensor to quantify photosynthesis traits across time in a large panel of durum wheat genotypes subjected to a progressive drought in replicated field trials over two growing seasons. The photosynthetic performance was measured at the canopy level by means of the operating efficiency of Photosystem II ( Fq'/Fm' ) and the kinetics of electron transport measured by reoxidation rates ( Fr1' and Fr2' ). Short- and long-term changes in ChlF traits were found in response to soil water availability and due to interactions with weather fluctuations. In mild drought, Fq'/Fm' and Fr2' were little affected, while Fr1' was consistently accelerated in water-limited compared to well-watered plants, increasingly so with rising vapour pressure deficit. This high-throughput approach allowed assessment of the native genetic diversity in ChlF traits while considering the diurnal dynamics of photosynthesis.
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Affiliation(s)
| | - Hans-Peter Piepho
- Biostatistics Unit, Institute of Crop Science, University of Hohenheim, Stuttgart, Germany
| | | | - Eder Licieri Groli
- Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy
| | - Maria Newcomb
- Maricopa Agricultural Center, University of Arizona, Maricopa, Arizona, USA
| | - Richard Ward
- Maricopa Agricultural Center, University of Arizona, Maricopa, Arizona, USA
| | - Roberto Tuberosa
- Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy
| | - Marco Maccaferri
- Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy
| | - Fabio Fiorani
- Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Jülich, Germany
| | - Uwe Rascher
- Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Jülich, Germany
| | - Onno Muller
- Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Jülich, Germany
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Sukhova EM, Vodeneev VA, Sukhov VS. Mathematical Modeling of Photosynthesis and Analysis of Plant Productivity. BIOCHEMISTRY (MOSCOW), SUPPLEMENT SERIES A: MEMBRANE AND CELL BIOLOGY 2021. [DOI: 10.1134/s1990747821010062] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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5
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Stirbet A, Lazár D, Guo Y, Govindjee G. Photosynthesis: basics, history and modelling. ANNALS OF BOTANY 2020; 126:511-537. [PMID: 31641747 PMCID: PMC7489092 DOI: 10.1093/aob/mcz171] [Citation(s) in RCA: 90] [Impact Index Per Article: 22.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Revised: 09/06/2019] [Accepted: 10/21/2019] [Indexed: 05/02/2023]
Abstract
BACKGROUND With limited agricultural land and increasing human population, it is essential to enhance overall photosynthesis and thus productivity. Oxygenic photosynthesis begins with light absorption, followed by excitation energy transfer to the reaction centres, primary photochemistry, electron and proton transport, NADPH and ATP synthesis, and then CO2 fixation (Calvin-Benson cycle, as well as Hatch-Slack cycle). Here we cover some of the discoveries related to this process, such as the existence of two light reactions and two photosystems connected by an electron transport 'chain' (the Z-scheme), chemiosmotic hypothesis for ATP synthesis, water oxidation clock for oxygen evolution, steps for carbon fixation, and finally the diverse mechanisms of regulatory processes, such as 'state transitions' and 'non-photochemical quenching' of the excited state of chlorophyll a. SCOPE In this review, we emphasize that mathematical modelling is a highly valuable tool in understanding and making predictions regarding photosynthesis. Different mathematical models have been used to examine current theories on diverse photosynthetic processes; these have been validated through simulation(s) of available experimental data, such as chlorophyll a fluorescence induction, measured with fluorometers using continuous (or modulated) exciting light, and absorbance changes at 820 nm (ΔA820) related to redox changes in P700, the reaction centre of photosystem I. CONCLUSIONS We highlight here the important role of modelling in deciphering and untangling complex photosynthesis processes taking place simultaneously, as well as in predicting possible ways to obtain higher biomass and productivity in plants, algae and cyanobacteria.
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Affiliation(s)
| | - Dušan Lazár
- Department of Biophysics, Center of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
| | - Ya Guo
- Key Laboratory of Advanced Process Control for Light Industry (Ministry of Education), Jiangnan University, Wuxi, China
- University of Missouri, Columbia, MO, USA
| | - Govindjee Govindjee
- Department of Biochemistry, Department of Plant Biology, and Center of Biophysics & Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
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Riznichenko GY, Belyaeva NE, Diakonova AN, Kovalenko IB, Maslakov AS, Antal TK, Goryachev SN, Plyusnina TY, Fedorov VA, Khruschev SS, Rubin AB. Models of Photosynthetic Electron Transport. Biophysics (Nagoya-shi) 2020. [DOI: 10.1134/s0006350920050152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Fu L, Xia Q, Tan J, Wu H, Guo Y. Modelling and simulation of chlorophyll fluorescence from PSII of a plant leaf as affected by both illumination light intensities and temperatures. IET Syst Biol 2019; 13:327-332. [PMID: 31778129 DOI: 10.1049/iet-syb.2019.0039] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
The emission of chlorophyll fluorescence (ChlF) from photosystem II (PSII) of plant leaves the couple with photoelectron transduction cascades in photosynthetic reactions and can be used to probe photosynthetic efficiency and plant physiology. Because of population increase, food shortages, and global warming, it is becoming more and more urgent to enhance plant photosynthesis efficiency by controlling plant growth rate. An effective model structure is essential for plant control strategy development. However, there is a lack of reporting on modelling and simulation of PSII activities under the interaction of both illumination light intensities and temperatures, which are the two important controllable factors affecting, plant growth, especially for a greenhouse. In this work, the authors extended their work on modelling photosynthetic activities as affected by light and temperature to cover both the interaction effects of illumination light intensities and temperature on ChlF emission. Experiments on ChlF were performed under different light intensities and temperatures and used to validate the developed model structure. The average relative error between experimental data and model fitting is <0.3%, which shows the effectiveness of the developed model structure. Simulations were performed to show the interaction effect of light and temperature effects on photosynthetic activities.
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Affiliation(s)
- Lijiang Fu
- Key Laboratory of Advanced Process Control for Light Industry, Ministry of Education, Jiangnan University, Wuxi 214122, People's Republic of China
| | - Qian Xia
- Key Laboratory of Advanced Process Control for Light Industry, Ministry of Education, Jiangnan University, Wuxi 214122, People's Republic of China
| | - Jinglu Tan
- University of Missouri, Columbia, MO 65211, USA
| | - Hao Wu
- Jiangsu Internet Agricultural Development Center, Nanjing 210017, People's Republic of China
| | - Ya Guo
- University of Missouri, Columbia, MO 65211, USA.
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Todorenko D, Timofeev N, Kovalenko I, Kukarskikh G, Matorin D, Antal T. Chromium effects on photosynthetic electron transport in pea (Pisum sativum L.). PLANTA 2019; 251:11. [PMID: 31776673 DOI: 10.1007/s00425-019-03304-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2019] [Accepted: 10/25/2019] [Indexed: 05/02/2023]
Abstract
MAIN CONCLUSION Components of the photosynthetic electron transport chain in pea (Pisum sativum L.) leaves under in vivo conditions showed the following sensitivity to the inhibitory action of chromium(VI): intersystem electron transport > photosystem I > photosystem II. Inhibitory effects of chromium (VI) (K2Cr2O7, Cr) on the light reactions of photosynthesis were studied in vivo in Pisum sativum L. by using Multi-function Plant Efficiency Analyser (M-PEA-2). Photosynthetic parameters related to photosystem (PS) II, PSI and intersystem electron carriers were calculated from the light-induced kinetics of prompt chlorophyll a fluorescence (OJIP transient), delayed chlorophyll a fluorescence (DF), and 820 nm modulated reflection (MR). We showed that the I2 step of DF induction is sensitive to inhibition of the Q0 site of the cytochrome b6f complex. Such parameters as δRo of the JIP test related to the functional state of photosynthetic reactions beyond the PQ pool, Vred of the MR induction assigned to the overall rate of P700+ and plastocyanin reduction, and I2 step of the DF induction were significantly altered in the presence of low-dose Cr(VI). Moderate doses of Cr affected mainly PSI-related parameters including Vox and ΔMR parameters of the MR induction, whereas high-dose treatment influenced JIP test parameters φPo(= FV/FM) and ψEo related to PSII. The obtained results showed that the earliest Cr(VI) effect on the photosynthetic electron transport chain manifests itself by inhibition of the intersystem electron transport, rather, at the level of the cytochrome b6f complex. Inhibitory effects of Cr on PSI were more pronounced than those on PSII. Sensitivity of the used kinetic parameters toward the functional state of photosynthetic reactions makes this approach suitable for early diagnostics of toxic action of pollutants on plants.
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Affiliation(s)
- Daria Todorenko
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Nyurgun Timofeev
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Ilya Kovalenko
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Galina Kukarskikh
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Dmitry Matorin
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Taras Antal
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, 119991, Russia.
- Department of Botany and Plant Ecology, Faculty of Natural Sciences and Geography, Pskov State University, Pskov, 180000, Russia.
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Feng S, Fu L, Xia Q, Tan J, Jiang Y, Guo Y. Modelling and simulation of photosystem II chlorophyll fluorescence transition from dark-adapted state to light-adapted state. IET Syst Biol 2019; 12:289-293. [PMID: 30472693 DOI: 10.1049/iet-syb.2018.5003] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
Green houses play a vital role in modern agriculture. Artificial light illumination is very important in a green house. While light is necessary for plant growth, excessive light in a green house may not bring more profit and even damages plants. Developing a plant-physiology-based light control strategy in a green house is important, which implies that a state-space model on photosynthetic activities is very useful because modern control theories and techniques are usually developed according to model structures in the state space. In this work, a simplified model structure on photosystem II activities was developed with seven state variables and chlorophyll fluorescence (ChlF) as the observable variable. Experiments on ChlF were performed. The Levenberg-Marquardt algorithm was used to estimate model parameters from experimental data. The model structure can fit experimental data with a small relative error (<2%). ChlF under different light intensities were simulated to show the effect of light intensity on ChlF emission. A simplified model structure with fewer state variables and model parameters will be more robust to perturbations and model parameter estimation. The model structure is thus expected useful in future green-house light control strategy development.
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Affiliation(s)
- Shaopeng Feng
- School of Internet of Things, Jiangnan University, Wuxi 214122, People's Republic of China
| | - Lijiang Fu
- School of Internet of Things, Jiangnan University, Wuxi 214122, People's Republic of China
| | - Qian Xia
- School of Internet of Things, Jiangnan University, Wuxi 214122, People's Republic of China
| | - Jinglu Tan
- Department of Bioengineering, University of Missouri, Columbia, MO 65211, USA
| | - Yongnian Jiang
- Jiangsu Zhongnong IoT Technology Co., Ltd, Yixing 214200, People's Republic of China
| | - Ya Guo
- Department of Bioengineering, University of Missouri, Columbia, MO 65211, USA.
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10
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Model exploration of interactions between algal functional diversity and productivity in chemostats to represent open ponds systems across climate gradients. Ecol Modell 2019. [DOI: 10.1016/j.ecolmodel.2019.05.007] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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11
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Hamdani S, Wang H, Zheng G, Perveen S, Qu M, Khan N, Khan W, Jiang J, Li M, Liu X, Zhu X, Chu C, Zhu XG. Genome-wide association study identifies variation of glucosidase being linked to natural variation of the maximal quantum yield of photosystem II. PHYSIOLOGIA PLANTARUM 2019; 166:105-119. [PMID: 30834537 DOI: 10.1111/ppl.12957] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2018] [Revised: 02/06/2019] [Accepted: 03/01/2019] [Indexed: 06/09/2023]
Abstract
The maximum quantum yield of photosystem II (as reflected by variable to maximum chlorophyll a fluorescence, Fv /Fm ) is regarded as one of the most important photosynthetic parameters. The genetic basis underlying natural variation in Fv /Fm , which shows low level of variations in plants under non-stress conditions, is not easy to be exploited using the conventional gene cloning approaches. Thus, in order to answer this question, we have followed another strategy: we used genome-wide association study (GWAS) and transgenic analysis in a rice mini-core collection. We report here that four single-nucleotide polymorphisms, located in the promoter region of β-glucosidase 5 (BGlu-5), are associated with observed variation in Fv /Fm . Indeed, our transgenic analysis showed a good correlation between BGlu-5 and Fv /Fm . Thus, our work demonstrates the feasibility of using GWAS to study natural variation in Fv /Fm , suggesting that cis-element polymorphism, affecting the BGlu-5 expression level, may, indirectly, contribute to Fv /Fm variation in rice through the gibberellin signaling pathway. Further research is needed to understand the mechanism of our novel observation.
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Affiliation(s)
- Saber Hamdani
- Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Hongru Wang
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Guangyong Zheng
- Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Shahnaz Perveen
- Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Mingnan Qu
- Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Naveed Khan
- Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Waqasuddin Khan
- Jamil-ur-Rahman Center for Genome Research, DR. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan
| | - Jianjun Jiang
- Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Ming Li
- Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Xinyu Liu
- Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Xiaocen Zhu
- Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Chengcai Chu
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Xin-Guang Zhu
- Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200031, China
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12
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Xia Q, Tan J, Ji X, Jiang Y, Guo Y. Modelling and simulation of chlorophyll fluorescence from photosystem II as affected by temperature. IET Syst Biol 2018; 12:304-310. [PMID: 30472695 DOI: 10.1049/iet-syb.2018.5030] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Emission of chlorophyll fluorescence (ChlF) from photosystem II (PSII) is affected by both plant status and environmental conditions. In this work, a state space model structure for ChlF from PSII with temperature as a variable model parameter was developed to provide insights into the temperature effects on photosynthesis and greenhouse temperature control. Experiments were carried out at 20, 25, and 30°C to validate the capability and flexibility of the developed model structure. Simulations of ChlF emission were performed for different temperatures. The results demonstrated the effectiveness of the ChlF model structure and the findings are useful for the development of greenhouse temperature control strategies.
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Affiliation(s)
- Qian Xia
- School of Internet of Things, Jiangnan University, Wuxi 214122, People's Republic of China
| | - Jinglu Tan
- Department of Bioengineering, University of Missouri, Columbia, MO 65211, USA
| | - Xunsheng Ji
- Key Laboratory of Advanced Process Control for Light Industry, Ministry of Education, Jiangnan University, Wuxi 214122, People's Republic of China
| | - Yongnian Jiang
- Jiangsu Zhongnong IoT Technology Co., Ltd, Yixing 214200, People's Republic of China
| | - Ya Guo
- Department of Bioengineering, University of Missouri, Columbia, MO 65211, USA.
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Antal TK, Maslakov A, Yakovleva OV, Krendeleva TE, Riznichenko GY, Rubin AB. Simulation of chlorophyll fluorescence rise and decay kinetics, and P 700-related absorbance changes by using a rule-based kinetic Monte-Carlo method. PHOTOSYNTHESIS RESEARCH 2018; 138:191-206. [PMID: 30062532 DOI: 10.1007/s11120-018-0564-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Accepted: 07/23/2018] [Indexed: 06/08/2023]
Abstract
A model of primary photosynthetic reactions in the thylakoid membrane was developed and its validity was tested by simulating three types of experimental kinetic curves: (1) the light-induced chlorophyll a fluorescence rise (OJIP transients) reflecting the stepwise transition of the photosynthetic electron transport chain from the oxidized to the fully reduced state; (2) the dark relaxation of the flash-induced fluorescence yield attributed to the QA- oxidation kinetics in PSII; and (3) the light-induced absorbance changes near 820 or 705 nm assigned to the redox transitions of P700 in PSI. A model was implemented by using a rule-based kinetic Monte-Carlo method and verified by simulating experimental curves under different treatments including photosynthetic inhibitors, heat stress, anaerobic conditions, and very high light intensity.
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Affiliation(s)
- T K Antal
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russian Federation, 119991.
| | - A Maslakov
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russian Federation, 119991
| | - O V Yakovleva
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russian Federation, 119991
| | - T E Krendeleva
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russian Federation, 119991
| | - G Yu Riznichenko
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russian Federation, 119991
| | - A B Rubin
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russian Federation, 119991
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14
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Kanwar MK, Yu J, Zhou J. Phytomelatonin: Recent advances and future prospects. J Pineal Res 2018; 65:e12526. [PMID: 30256447 DOI: 10.1111/jpi.12526] [Citation(s) in RCA: 112] [Impact Index Per Article: 18.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Revised: 09/16/2018] [Accepted: 09/18/2018] [Indexed: 12/13/2022]
Abstract
Melatonin (MEL) has been revealed as a phylogenetically conserved molecule with a ubiquitous distribution from primitive photosynthetic bacteria to higher plants, including algae and fungi. Since MEL is implicated in numerous plant developmental processes and stress responses, the exploration of its functions in plant has become a rapidly progressing field with the new paradigm of involvement in plants growth and development. The pleiotropic involvement of MEL in regulating the transcripts of numerous genes confirms its vital involvement as a multi-regulatory molecule that architects many aspects of plant development. However, the cumulative research in plants is still preliminary and fragmentary in terms of its established functions compared to what is known about MEL physiology in animals. This supports the need for a comprehensive review that summarizes the new aspects pertaining to its functional role in photosynthesis, phytohormonal interactions under stress, cellular redox signaling, along with other regulatory roles in plant immunity, phytoremediation, and plant microbial interactions. The present review covers the latest advances on the mechanistic roles of phytomelatonin. While phytomelatonin is a sovereign plant growth regulator that can interact with the functions of other plant growth regulators or hormones, its qualifications as a complete phytohormone are still to be established. This review also showcases the yet to be identified potentials of phytomelatonin that will surely encourage the plant scientists to uncover new functional aspects of phytomelatonin in plant growth and development, subsequently improving its status as a potential new phytohormone.
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Affiliation(s)
- Mukesh Kumar Kanwar
- Department of Horticulture, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zijingang Campus, Zhejiang University, Hangzhou, China
| | - Jingquan Yu
- Department of Horticulture, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zijingang Campus, Zhejiang University, Hangzhou, China
- Key Laboratory of Horticultural Plants Growth, Development and Quality Improvement, Agricultural Ministry of China, Hangzhou, China
| | - Jie Zhou
- Department of Horticulture, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zijingang Campus, Zhejiang University, Hangzhou, China
- Key Laboratory of Horticultural Plants Growth, Development and Quality Improvement, Agricultural Ministry of China, Hangzhou, China
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15
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Zuo Z, Sun L, Wang T, Miao P, Zhu X, Liu S, Song F, Mao H, Li X. Melatonin Improves the Photosynthetic Carbon Assimilation and Antioxidant Capacity in Wheat Exposed to Nano-ZnO Stress. Molecules 2017; 22:E1727. [PMID: 29057793 PMCID: PMC6151777 DOI: 10.3390/molecules22101727] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2017] [Revised: 10/09/2017] [Accepted: 10/12/2017] [Indexed: 11/23/2022] Open
Abstract
The release of nanoparticles into the environment is inevitable, which has raised global environmental concern. Melatonin is involved in various stress responses in plants. The present study investigated the effects of melatonin on photosynthetic carbon (C) assimilation and plant growth in nano-ZnO stressed plants. It was found that melatonin improved the photosynthetic C assimilation in nano-ZnO stressed wheat plants, mainly due to the enhanced photosynthetic energy transport efficiency, higher chlorophyll concentration and higher activities of Rubisco and ATPases. In addition, melatonin enhanced the activities of antioxidant enzymes to protect the photosynthetic electron transport system in wheat leaves against the oxidative burst caused by nano-ZnO stress. These results suggest that melatonin could improve the tolerance of wheat plants to nano-ZnO stress.
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Affiliation(s)
- Zhiyu Zuo
- Key Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education/High-tech Key Laboratory of Agricultural Equipment and Intelligence of Jiangsu Province, School of Agricultural Equipment and Engineering, Jiangsu University, Zhenjiang 212013, China.
| | - Luying Sun
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China.
| | - Tianyu Wang
- Key Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education/High-tech Key Laboratory of Agricultural Equipment and Intelligence of Jiangsu Province, School of Agricultural Equipment and Engineering, Jiangsu University, Zhenjiang 212013, China.
| | - Peng Miao
- Key Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education/High-tech Key Laboratory of Agricultural Equipment and Intelligence of Jiangsu Province, School of Agricultural Equipment and Engineering, Jiangsu University, Zhenjiang 212013, China.
| | - Xiancan Zhu
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China.
| | - Shengqun Liu
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China.
| | - Fengbin Song
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China.
| | - Hanping Mao
- Key Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education/High-tech Key Laboratory of Agricultural Equipment and Intelligence of Jiangsu Province, School of Agricultural Equipment and Engineering, Jiangsu University, Zhenjiang 212013, China.
| | - Xiangnan Li
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China.
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16
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ePlant for quantitative and predictive plant science research in the big data era—Lay the foundation for the future model guided crop breeding, engineering and agronomy. QUANTITATIVE BIOLOGY 2017. [DOI: 10.1007/s40484-017-0110-9] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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17
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Essemine J, Xiao Y, Qu M, Mi H, Zhu XG. Cyclic electron flow may provide some protection against PSII photoinhibition in rice (Oryza sativa L.) leaves under heat stress. JOURNAL OF PLANT PHYSIOLOGY 2017; 211:138-146. [PMID: 28199904 DOI: 10.1016/j.jplph.2017.01.007] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2016] [Revised: 12/24/2016] [Accepted: 01/20/2017] [Indexed: 05/08/2023]
Abstract
Previously we have shown that a quick down-regulation in PSI activity compares to that of PSII following short-term heat stress for two rice groups including C4023 and Q4149, studied herein. These accessions were identified to have different natural capacities in driving cyclic electron flow (CEF) around PSI; i.e., low CEF (lcef) and high CEF (hcef) for C4023 and Q4149, respectively. The aim of this study was to investigate whether these two lines have different mechanisms of protecting photosystem II from photodamage under heat stress. We observed a stepwise alteration in the shape of Chl a fluorescence induction (OJIP) with increasing temperature treatment. The effect of 44°C treatment on the damping in Chl a fluorescence was more pronounced in C4023 than in Q4149. Likewise, we noted a disruption in the I-step, a decline in the Fv due to a strong damping in the Fm, and a slight increase in the F0. Normalized data demonstrated that the I-step seems more susceptible to 44°C in C4023 than in Q4149. We also measured the redox states of plastocyanin (PC) and P700 by monitoring the transmission changes at 820nm (I820), and observed a disturbance in the oxidation/reduction kinetics of PC and P700. The decline in the amplitude of their oxidation was shown to be about 29% and 13% for C4023 and Q4149, respectively. The electropotential component (Δφ) of ms-DLE appeared more sensitive to temperature stress than the chemical component (ΔpH), and the impact of heat was more evident and drastic in C4023 than in Q4149. Under heat stress, we noticed a concomitant decline in the primary photochemistry of PSII as well as in both the membrane energization process and the lumen protonation for both accessions, and it is evident that heat affects these parameters more in C4023 than in Q4149. All these data suggest that higher CET can confer higher photoprotection to PSII in rice lines, which can be a desirable trait during rice breeding, especially in the context of a "warming" world.
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Affiliation(s)
- Jemaa Essemine
- CAS-Key Laboratory for Computational Biology and State Key Laboratory for Hybrid Rice, Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Yi Xiao
- CAS-Key Laboratory for Computational Biology and State Key Laboratory for Hybrid Rice, Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Mingnan Qu
- CAS-Key Laboratory for Computational Biology and State Key Laboratory for Hybrid Rice, Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Hualing Mi
- National Key Laboratory of Plant Molecular Genetics, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Xin-Guang Zhu
- CAS-Key Laboratory for Computational Biology and State Key Laboratory for Hybrid Rice, Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.
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18
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Zobnina V, Lambreva MD, Rea G, Campi G, Antonacci A, Scognamiglio V, Giardi MT, Polticelli F. The plastoquinol-plastoquinone exchange mechanism in photosystem II: insight from molecular dynamics simulations. PHOTOSYNTHESIS RESEARCH 2017; 131:15-30. [PMID: 27376842 DOI: 10.1007/s11120-016-0292-4] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2016] [Accepted: 06/22/2016] [Indexed: 05/23/2023]
Abstract
In the photosystem II (PSII) of oxygenic photosynthetic organisms, the reaction center (RC) core mediates the light-induced electron transfer leading to water splitting and production of reduced plastoquinone molecules. The reduction of plastoquinone to plastoquinol lowers PSII affinity for the latter and leads to its release. However, little is known about the role of protein dynamics in this process. Here, molecular dynamics simulations of the complete PSII complex embedded in a lipid bilayer have been used to investigate the plastoquinol release mechanism. A distinct dynamic behavior of PSII in the presence of plastoquinol is observed which, coupled to changes in charge distribution and electrostatic interactions, causes disruption of the interactions seen in the PSII-plastoquinone complex and leads to the "squeezing out" of plastoquinol from the binding pocket. Displacement of plastoquinol closes the second water channel, recently described in a 2.9 Å resolution PSII structure (Guskov et al. in Nat Struct Mol Biol 16:334-342, 2009), allowing to rule out the proposed "alternating" mechanism of plastoquinol-plastoquinone exchange, while giving support to the "single-channel" one. The performed simulations indicated a pivotal role of D1-Ser264 in modulating the dynamics of the plastoquinone binding pocket and plastoquinol-plastoquinone exchange via its interaction with D1-His252 residue. The effects of the disruption of this hydrogen bond network on the PSII redox reactions were experimentally assessed in the D1 site-directed mutant Ser264Lys.
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Affiliation(s)
- Veranika Zobnina
- Theoretical Biology and Bioinformatics Laboratory, Department of Sciences, Roma Tre University, Viale G. Marconi 446, 00146, Rome, Italy
| | - Maya D Lambreva
- Institute of Crystallography CNR, 00015, Monterotondo Scalo, Rome, Italy
| | - Giuseppina Rea
- Institute of Crystallography CNR, 00015, Monterotondo Scalo, Rome, Italy
| | - Gaetano Campi
- Institute of Crystallography CNR, 00015, Monterotondo Scalo, Rome, Italy
| | - Amina Antonacci
- Institute of Crystallography CNR, 00015, Monterotondo Scalo, Rome, Italy
| | | | | | - Fabio Polticelli
- Theoretical Biology and Bioinformatics Laboratory, Department of Sciences, Roma Tre University, Viale G. Marconi 446, 00146, Rome, Italy.
- National Institute of Nuclear Physics, Roma Tre Section, 00146, Rome, Italy.
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19
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Systems approach to excitation-energy and electron transfer reaction networks in photosystem II complex: model studies for chlorophyll a fluorescence induction kinetics. J Theor Biol 2015; 380:220-37. [PMID: 26025316 DOI: 10.1016/j.jtbi.2015.05.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2014] [Revised: 05/02/2015] [Accepted: 05/05/2015] [Indexed: 01/30/2023]
Abstract
Photosystem II (PS II) is a protein complex which evolves oxygen and drives charge separation for photosynthesis employing electron and excitation-energy transfer processes over a wide timescale range from picoseconds to milliseconds. While the fluorescence emitted by the antenna pigments of this complex is known as an important indicator of the activity of photosynthesis, its interpretation was difficult because of the complexity of PS II. In this study, an extensive kinetic model which describes the complex and multi-timescale characteristics of PS II is analyzed through the use of the hierarchical coarse-graining method proposed in the authors׳ earlier work. In this coarse-grained analysis, the reaction center (RC) is described by two states, open and closed RCs, both of which consist of oxidized and neutral special pairs being in quasi-equilibrium states. Besides, the PS II model at millisecond scale with three-state RC, which was studied previously, could be derived by suitably adjusting the kinetic parameters of electron transfer between tyrosine and RC. Our novel coarse-grained model of PS II can appropriately explain the light-intensity dependent change of the characteristic patterns of fluorescence induction kinetics from O-J-I-P, which shows two inflection points, J and I, between initial point O and peak point P, to O-J-D-I-P, which shows a dip D between J and I inflection points.
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20
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Hamdani S, Qu M, Xin CP, Li M, Chu C, Zhu XG. Variations between the photosynthetic properties of elite and landrace Chinese rice cultivars revealed by simultaneous measurements of 820 nm transmission signal and chlorophyll a fluorescence induction. JOURNAL OF PLANT PHYSIOLOGY 2015; 177:128-138. [PMID: 25732386 DOI: 10.1016/j.jplph.2014.12.019] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2014] [Revised: 11/21/2014] [Accepted: 12/08/2014] [Indexed: 06/04/2023]
Abstract
The difference between the photosynthetic properties of elite and landrace Chinese rice cultivars was studied, using chlorophyll a fluorescence induction (mostly a monitor of Photosystem II activity) and I820 transmission signal (mostly a monitor of Photosystem I activity) to identify potential photosynthetic features differentiating these two groups, which show different degrees of artificial selection and grain yields. A higher fluorescence (related to PSII) IP rise phase and a lower P700(+) (related to PSI) accumulation were observed in the elite cultivars as compared to the landraces. Using these data, together with simulation data from a kinetic model of fluorescence induction, we show that the high IP rise phase and the low P700(+) accumulation can be a result of transient block on electron transfer and traffic jam on the electron acceptor side of PSI under a high [NADPH]/[NADP(+)] ratio. Considering that the ferredoxin NADP(+) reductase (FNR) transcript levels of XS134 (a representative elite cultivars) remains unaffected during the first few minutes of light/dark transition compared to Q4145 (a representative landrace cultivars), which shows a strong decline during the same time range, we propose that the FNR of elite cultivars may take more time to be inactivated in darkness. During this time the FNR enzyme can continue to reduce NADP(+) molecules, leading to initially high [NADPH]/[NADP(+)] ratio during OJIP transient. These data suggested a potential artificial selection of FNR during the breeding process of these examined elite rice cultivars.
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Affiliation(s)
- Saber Hamdani
- CAS Key Laboratory of Computational Biology, Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
| | - Mingnan Qu
- CAS Key Laboratory of Computational Biology, Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
| | - Chang-Peng Xin
- CAS Key Laboratory of Computational Biology, Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
| | - Ming Li
- CAS Key Laboratory of Computational Biology, Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
| | - Chengcai Chu
- Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Xin-Guang Zhu
- CAS Key Laboratory of Computational Biology, Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China.
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21
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Stirbet A, Riznichenko GY, Rubin AB, Govindjee. Modeling chlorophyll a fluorescence transient: relation to photosynthesis. BIOCHEMISTRY (MOSCOW) 2015; 79:291-323. [PMID: 24910205 DOI: 10.1134/s0006297914040014] [Citation(s) in RCA: 76] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
To honor Academician Alexander Abramovitch Krasnovsky, we present here an educational review on the relation of chlorophyll a fluorescence transient to various processes in photosynthesis. The initial event in oxygenic photosynthesis is light absorption by chlorophylls (Chls), carotenoids, and, in some cases, phycobilins; these pigments form the antenna. Most of the energy is transferred to reaction centers where it is used for charge separation. The small part of energy that is not used in photochemistry is dissipated as heat or re-emitted as fluorescence. When a photosynthetic sample is transferred from dark to light, Chl a fluorescence (ChlF) intensity shows characteristic changes in time called fluorescence transient, the OJIPSMT transient, where O (the origin) is for the first measured minimum fluorescence level; J and I for intermediate inflections; P for peak; S for semi-steady state level; M for maximum; and T for terminal steady state level. This transient is a real signature of photosynthesis, since diverse events can be related to it, such as: changes in redox states of components of the linear electron transport flow, involvement of alternative electron routes, the build-up of a transmembrane pH gradient and membrane potential, activation of different nonphotochemical quenching processes, activation of the Calvin-Benson cycle, and other processes. In this review, we present our views on how different segments of the OJIPSMT transient are influenced by various photosynthetic processes, and discuss a number of studies involving mathematical modeling and simulation of the ChlF transient. A special emphasis is given to the slower PSMT phase, for which many studies have been recently published, but they are less known than on the faster OJIP phase.
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Affiliation(s)
- A Stirbet
- 204 Anne Burras Lane, Newport News, VA 23606, USA.
| | | | | | - Govindjee
- Department of Plant Biology, Department of Biochemistry and Center of Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
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22
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Kenny P, Flynn KJ. In silico optimization for production of biomass and biofuel feedstocks from microalgae. JOURNAL OF APPLIED PHYCOLOGY 2014; 27:33-48. [PMID: 25620851 PMCID: PMC4297880 DOI: 10.1007/s10811-014-0342-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2014] [Revised: 05/08/2014] [Accepted: 05/08/2014] [Indexed: 05/23/2023]
Abstract
Optimization of the production rate of biomass rich in N (e.g. for protein) or C (e.g. for biofuels) is key to making algae-based technology commercially viable. Creating the appropriate conditions to achieve this is a challenge; operational permutations are extensive, while geographical variations localise effective methods of cultivation when utilising natural illumination. As an aid to identifying suitable operational envelopes, a mechanistic acclimative model of microalgae growth is used for the first time to simulate production in virtual systems over a broad latitudinal range. Optimization of production is achieved through selection of strain characteristics, system optical depth, nutrient supply, and dilution regimes for different geographic and seasonal illumination profiles. Results reveal contrasting requirements for optimising biomass vs biofuels production. Trade-offs between maximising areal and volumetric production while conserving resources, plus hydrodynamic limits on reactor design, lead to quantifiable constraints for optimal operational permutations. Simulations show how selection of strains with a high maximum growth rate, Um , remains the prime factor enabling high productivity. Use of an f/2 growth medium with a culture dilution rate set at ~25 % of Um delivers sufficient nutrition for optimal biomass production. Further, sensitivity to the balance between areal and volumetric productivity leads to a well-defined critical depth at ~0.1 m at which areal biofuel production peaks with use of a low concentration f/4 growth medium combined with a dilution rate ~15 % of Um . Such analyses, and developments thereof, will aid in developing a decision support tool to enable more productive methods of cultivation.
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Affiliation(s)
- Philip Kenny
- Centre for Sustainable Aquatic Research, Department of Biosciences, College of Science, Swansea University, Singleton Park, Swansea, SA2 8PP UK
| | - Kevin J. Flynn
- Centre for Sustainable Aquatic Research, Department of Biosciences, College of Science, Swansea University, Singleton Park, Swansea, SA2 8PP UK
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23
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Computer modeling of electron and proton transport in chloroplasts. Biosystems 2014; 121:1-21. [PMID: 24835748 DOI: 10.1016/j.biosystems.2014.04.007] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2014] [Revised: 04/27/2014] [Accepted: 04/28/2014] [Indexed: 11/21/2022]
Abstract
Photosynthesis is one of the most important biological processes in biosphere, which provides production of organic substances from atmospheric CO2 and water at expense of solar energy. In this review, we contemplate computer models of oxygenic photosynthesis in the context of feedback regulation of photosynthetic electron transport in chloroplasts, the energy-transducing organelles of the plant cell. We start with a brief overview of electron and proton transport processes in chloroplasts coupled to ATP synthesis and consider basic regulatory mechanisms of oxygenic photosynthesis. General approaches to computer simulation of photosynthetic processes are considered, including the random walk models of plastoquinone diffusion in thylakoid membranes and deterministic approach to modeling electron transport in chloroplasts based on the mass action law. Then we focus on a kinetic model of oxygenic photosynthesis that includes key stages of the linear electron transport, alternative pathways of electron transfer around photosystem I (PSI), transmembrane proton transport and ATP synthesis in chloroplasts. This model includes different regulatory processes: pH-dependent control of the intersystem electron transport, down-regulation of photosystem II (PSII) activity (non-photochemical quenching), the light-induced activation of the Bassham-Benson-Calvin (BBC) cycle. The model correctly describes pH-dependent feedback control of electron transport in chloroplasts and adequately reproduces a variety of experimental data on induction events observed under different experimental conditions in intact chloroplasts (variations of CO2 and O2 concentrations in atmosphere), including a complex kinetics of P700 (primary electron donor in PSI) photooxidation, CO2 consumption in the BBC cycle, and photorespiration. Finally, we describe diffusion-controlled photosynthetic processes in chloroplasts within the framework of the model that takes into account complex architecture of chloroplasts and lateral heterogeneity of lamellar system of thylakoids. The lateral profiles of pH in the thylakoid lumen and in the narrow gap between grana thylakoids have been calculated under different metabolic conditions. Analyzing topological aspects of diffusion-controlled stages of electron and proton transport in chloroplasts, we conclude that along with the NPQ mechanism of attenuation of PSII activity and deceleration of PQH2 oxidation by the cytochrome b6f complex caused by the lumen acidification, the intersystem electron transport may be down-regulated due to the light-induced alkalization of the narrow partition between adjacent thylakoids of grana. The computer models of electron and proton transport described in this article may be integrated as appropriate modules into a comprehensive model of oxygenic photosynthesis.
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Deák Z, Sass L, Kiss E, Vass I. Characterization of wave phenomena in the relaxation of flash-induced chlorophyll fluorescence yield in cyanobacteria. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2014; 1837:1522-32. [PMID: 24434028 DOI: 10.1016/j.bbabio.2014.01.003] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2013] [Revised: 12/30/2013] [Accepted: 01/07/2014] [Indexed: 12/25/2022]
Abstract
Fluorescence yield relaxation following a light pulse was studied in various cyanobacteria under aerobic and microaerobic conditions. In Synechocystis PCC 6803 fluorescence yield decays in a monotonous fashion under aerobic conditions. However, under microaerobic conditions the decay exhibits a wave feature showing a dip at 30-50 ms after the flash followed by a transient rise, reaching maximum at ~1s, before decaying back to the initial level. The wave phenomenon can also be observed under aerobic conditions in cells preilluminated with continuous light. Illumination preconditions cells for the wave phenomenon transiently: for few seconds in Synechocystis PCC 6803, but up to one hour in Thermosynechocystis elongatus BP-1. The wave is eliminated by inhibition of plastoquinone binding either to the QB site of Photosystem-II or the Qo site of cytochrome b6f complex by 3-(3',4'-dichlorophenyl)-1,1-dimethylurea or 2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone, respectively. The wave is also absent in mutants, which lack either Photosystem-I or the NAD(P)H-quinone oxidoreductase (NDH-1) complex. Monitoring the redox state of the plastoquinone pool revealed that the dip of the fluorescence wave corresponds to transient oxidation, whereas the following rise to re-reduction of the plastoquinone pool. It is concluded that the unusual wave feature of fluorescence yield relaxation reflects transient oxidation of highly reduced plastoquinone pool by Photosystem-I followed by its re-reduction from stromal components via the NDH-1 complex, which is transmitted back to the fluorescence yield modulator primary quinone electron acceptor via charge equilibria. Potential applications of the wave phenomenon in studying photosynthetic and respiratory electron transport are discussed. This article is part of a special issue entitled: photosynthesis research for sustainability: keys to produce clean energy.
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Affiliation(s)
- Zsuzsanna Deák
- Institute of Plant Biology, Biological Research Centre of the Hungarian Academy of Sciences, Temesvari krt. 62, 6726 Szeged, Hungary
| | - László Sass
- Institute of Plant Biology, Biological Research Centre of the Hungarian Academy of Sciences, Temesvari krt. 62, 6726 Szeged, Hungary
| | - Eva Kiss
- Institute of Plant Biology, Biological Research Centre of the Hungarian Academy of Sciences, Temesvari krt. 62, 6726 Szeged, Hungary
| | - Imre Vass
- Institute of Plant Biology, Biological Research Centre of the Hungarian Academy of Sciences, Temesvari krt. 62, 6726 Szeged, Hungary.
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