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Singh PR, Pathak J, Rajneesh, Ahmed H, Häder DP, Sinha RP. Physiological responses of the cyanobacterium Synechocystis sp. PCC 6803 under rhythmic light variations. Photochem Photobiol Sci 2023; 22:2055-2069. [PMID: 37227683 DOI: 10.1007/s43630-023-00429-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Accepted: 04/26/2023] [Indexed: 05/26/2023]
Abstract
Cyanobacteria are challenged by daily fluctuations of light intensities and photoperiod in their natural habitats, which affect the physiology and fitness of cyanobacteria. Circadian rhythms (CRs), an important endogenous process found in all organisms including cyanobacteria, control their physiological activities and helps in coping with 24-h light/dark (LD) cycle. In cyanobacteria, physiological responses under rhythmic ultraviolet radiation (UVR) are poorly studied. Therefore, we studied the changes in photosynthetic pigments, and physiological parameters of Synechocystis sp. PCC 6803 under UVR and photosynthetically active radiation (PAR) of light/dark (LD) oscillations having the combinations of 0, 4:20, 8:16, 12:12, 16:8, 20:4, and 24:24 h. The LD 16:8 enhanced the growth, pigments, proteins, photosynthetic efficiency, and physiology of Synechocystis sp. PCC6803. Continuous light (LL 24) of UVR and PAR exerted negative impact on the photosynthetic pigments, and chlorophyll fluorescence. Significant increase in reactive oxygen species (ROS) resulted in loss of plasma membrane integrity followed by decreased viability of cells. The dark phase played a significant role in Synechocystis to withstand the LL 24 under PAR and UVR. This study offers detailed understanding of the physiological responses of the cyanobacterium to changing light environment.
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Affiliation(s)
- Prashant R Singh
- Laboratory of Photobiology and Molecular Microbiology, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Jainendra Pathak
- Laboratory of Photobiology and Molecular Microbiology, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
- Department of Botany, Pt. Jawaharlal Nehru College (Affiliated to Bundelkhand University, Jhansi), Banda, 210001, India
| | - Rajneesh
- Laboratory of Photobiology and Molecular Microbiology, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Haseen Ahmed
- Laboratory of Photobiology and Molecular Microbiology, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Donat-P Häder
- Department of Biology, Emeritus From Friedrich-Alexander University, Neue Str. 9, 91096, Möhrendorf, Germany
| | - Rajeshwar P Sinha
- Laboratory of Photobiology and Molecular Microbiology, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India.
- University Center for Research and Development (UCRD), Chandigarh University, Chandigarh, India.
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Kumar N, Kar S, Shukla P. Role of regulatory pathways and multi-omics approaches for carbon capture and mitigation in cyanobacteria. BIORESOURCE TECHNOLOGY 2022; 366:128104. [PMID: 36257524 DOI: 10.1016/j.biortech.2022.128104] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 10/05/2022] [Accepted: 10/07/2022] [Indexed: 06/16/2023]
Abstract
Cyanobacteria are known for their metabolic potential and carbon capture and sequestration capabilities. These cyanobacteria are not only an effective source for carbon minimization and resource mobilization into value-added products for biotechnological gains. The present review focuses on the detailed description of carbon capture mechanisms exerted by the various cyanobacterial strains, the role of important regulatory pathways, and their subsequent genes responsible for such mechanisms. Moreover, this review will also describe effectual mechanisms of central carbon metabolism like isoprene synthesis, ethylene production, MEP pathway, and the role of Glyoxylate shunt in the carbon sequestration mechanisms. This review also describes some interesting facets of using carbon assimilation mechanisms for valuable bio-products. The role of regulatory pathways and multi-omics approaches in cyanobacteria will not only be crucial towards improving carbon utilization but also will give new insights into utilizing cyanobacterial bioresource for carbon neutrality.
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Affiliation(s)
- Niwas Kumar
- Society for Research and Initiatives for Sustainable Technologies and Institutions, Navrangapura, Ahmedabad 380009, India
| | - Srabani Kar
- Enzyme Technology and Protein Bioinformatics Laboratory, School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Pratyoosh Shukla
- Enzyme Technology and Protein Bioinformatics Laboratory, School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi 221005, India.
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Hu L, Guo S, Wang B, Fu R, Fan D, Jiang M, Fei Q, Gonzalez R. Bio-valorization of C1 gaseous substrates into bioalcohols: Potentials and challenges in reducing carbon emissions. Biotechnol Adv 2022; 59:107954. [DOI: 10.1016/j.biotechadv.2022.107954] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2021] [Revised: 03/29/2022] [Accepted: 04/04/2022] [Indexed: 11/02/2022]
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4
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Cyanobacteria: Model Microorganisms and Beyond. Microorganisms 2022; 10:microorganisms10040696. [PMID: 35456747 PMCID: PMC9025173 DOI: 10.3390/microorganisms10040696] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 03/21/2022] [Accepted: 03/22/2022] [Indexed: 02/01/2023] Open
Abstract
In this review, the general background is provided on cyanobacteria, including morphology, cell membrane structure, and their photosynthesis pathway. The presence of cyanobacteria in nature, and their industrial applications are discussed, and their production of secondary metabolites are explained. Biofilm formation, as a common feature of microorganisms, is detailed and the role of cell diffusion in bacterial colonization is described. Then, the discussion is narrowed down to cyanobacterium Synechocystis, as a lab model microorganism. In this relation, the morphology of Synechocystis is discussed and its different elements are detailed. Type IV pili, the complex multi-protein apparatus for motility and cell-cell adhesion in Synechocystis is described and the underlying function of its different elements is detailed. The phototaxis behavior of the cells, in response to homogenous or directional illumination, is reported and its relation to the run and tumble statistics of the cells is emphasized. In Synechocystis suspensions, there may exist a reciprocal interaction between the cell and the carrying fluid. The effects of shear flow on the growth, doubling per day, biomass production, pigments, and lipid production of Synechocystis are reported. Reciprocally, the effects of Synechocystis presence and its motility on the rheological properties of cell suspensions are addressed. This review only takes up the general grounds of cyanobacteria and does not get into the detailed biological aspects per se. Thus, it is substantially more comprehensive in that sense than other reviews that have been published in the last two decades. It is also written not only for the researchers in the field, but for those in physics and engineering, who may find it interesting, useful, and related to their own research.
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5
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Microwave-Assisted Extraction of Fatty Acids from Cultured and Commercial Phytoplankton Species. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12052407] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
(1) Background: The extraction of fatty acids from microalgae and cyanobacteria is mostly performed with organic solvents and laborious procedures. Microwave-assisted extraction (MAE) can be a more effective and environmentally friendly process than traditional extraction (TE), which uses a large volume of solvent and conduction heating. Freshwater phytoplankton inhabits diverse aquatic environments and is a promising source of fatty acids and green precursors in the synthesis of biofuel, including cyanobacterial biomass. Therefore, the aim of this study was to investigate the potential of MAE to extract fatty acids from a Chlorella sp. microalga and two cyanobacteria, namely, Arthrospira sp. and Sphaerospermopsis torques-reginae, for biodiesel production. For this purpose, the lipid content and fatty acid profile of these strains were compared after treating biomass with the two extraction methods. (2) Methods: MAE and TE were used as extraction procedures; gas chromatography–mass spectrometry was used to assess the fatty acid profiles, and X-ray spectroscopy was used to analyze biomass. (3) Results: Although the fatty acid profile of the oil obtained by TE showed higher concentrations of fatty acids, the MAE method was able to extract more types of fatty acids. The variety of fatty acids extracted by the MAE, especially those with unsaturated chains, allowed for better quality biodiesel, presenting advantages over previous methods and studies. According to the analyses, essential fatty acids 16:0, 16:1, and 18:2 were found to be abundant in both cyanobacterial strains and in microalga, showing potential for biofuel production. Additionally, metal composition was determined as its content may indicate potential pro-oxidant influence in biofuel production. (4) Conclusions: MAE is a useful and green strategy to extract fatty acids from freshwater phytoplankton. Cyanobacteria can also be a beneficial source of fatty acids for biodiesel synthesis.
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Sherief N, Anand M, Ramachandran M, Vidhya P. A Review on Various Biofuels and its Applications. 1 2022; 8:1-9. [DOI: 10.46632/jemm/8/1/1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Abstract
Biofuels derived from biofuels, plant or algae or animal wastes. Unlike fossil fuels such as petroleum, coal and natural gas, refilled immediately. Biofuels are fuels made from recently harvested plants. They act like fossil fuels: they burn when ignited, releasing energy that can be converted into kinetic energy in a car, or heat a home. Biofuels can
be obtained from a variety of crops and from a wide range of plant products from other industries. Not only is biodiesel stable, it is also a highly environmentally friendly, clean burning option that can be used without modification in diesel engines. In fact, biodiesel reduces greenhouse gas emissions by 56% to 86%, which means that the use of biodiesel has already reduced carbon emissions by 75.5 million metric tons. Many countries promote the use of biodiesel. In 2001, global biodiesel consumption was approximately 0.3 billion gallons. Based on the raw material, biofuels are divided
into four groups: third, fourth (FGBs), first biodiesel, which is the only is a locally produced, clean-burning, renewable alternative to petroleum diesel. The use of biodiesel as a vehicle fuel enhances energy conservation, improves air quality and the environment, and provides safety benefits. Biofuels are transport fuels such as ethanol and biomass based diesel fuels. These fuels are usually blended with petroleum fuels (petrol and distillation / diesel fuel and heating oil), but can also be used on their own. Scientists have found that, in practice, biofuels produced from agricultural crops
cause less pollution and greenhouse gas emissions than conventional fossil fuels, causing some environmental problems. Biofuels can also affect the poor. Various problems arise due to high prices for crops. It can go from improved water quality to creating new jobs in economically backward areas. Some applications of bioenergy require a feed based on residues from dedicated field production (such as energy crops) or agricultural production. However, many plant species grown for biofuels release higher levels of the ozone precursor isoprene than conventional crops and plants. Excess ozone poses a well-documented risk to human health, with 22,000 premature deaths each year linked to ground ozone exposure in Europe.
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Affiliation(s)
- Nisha Sherief
- Department of Mechanbical Engineering, Jyothi Engineering College, Thrissur, India
| | - M Anand
- R&D Division, Institute for Science, Engineering and Technology Research, India
| | - M Ramachandran
- REST LABS, Kaveripattinam, Krishnagiri, Tamil Nadu, India
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A Mini Review on Pyrolysis of Natural Algae for Bio-Fuel and Chemicals. Processes (Basel) 2021. [DOI: 10.3390/pr9112042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
The disposal and use of natural algae have recently been the subject of great interest, due to increasing concern for environmental protection and resource utilization. In this paper, a mini review of recent research on the pyrolysis of natural algae, especially the algae from water blooms, is presented. The chemical compositions of the natural algae are summarized, and the pyrolysis properties of different compositions are reviewed. Non-catalytic, catalytic, and integrated catalytic processes are reviewed. Different ideas and methods for the production of bio-fuel or chemicals are discussed. Apparently, deoxygenation and denitrogenation are highly necessary for algae-based bio-fuel and catalysts play an important role in these processes. In addition, the integrated catalytic process, which involves catalysis and other operation conditions aside from the thermal treatment under inert atmosphere, shows potential for the valorization of algae-based bio-oil. Based on the recent concept and progress, the research gaps are discussed, followed by the challenges and proposals to achieve high-value utilization of the natural algae.
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Li K, Zhao S, Guan W, Li KJ. Planktonic bacteria in white shrimp (Litopenaeus vannamei) and channel catfish (Letalurus punetaus) aquaculture ponds in a salt-alkaline region. Lett Appl Microbiol 2021; 74:212-219. [PMID: 34778977 DOI: 10.1111/lam.13600] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 10/01/2021] [Accepted: 10/26/2021] [Indexed: 01/01/2023]
Abstract
Aquaculture in salt-alkaline regions is encouraged in China, and culture of many aquatic species has been introduced into these areas. In this study, we cultured two species, white shrimp (Litopenaeus vannamei) and channel catfish (Letalurus punetaus) separately in aquaculture ponds in a salt-alkaline region in northwest China and assessed the impacts of the aquaculture operations on the planktonic bacterial community in the culture ponds. Culture of both species decreased the planktonic bacterial diversity and altered the bacterial community structure in the aquaculture ponds compared with the source water. Among the 10 dominant bacterial phyla, 8 were significantly correlated with environmental parameters; the exception was Actinobacteriota, the most dominant phylum, and Firmicutes. Proteobacteria and Bacteroidota abundances showed significant positive correlations with alkalinity, whereas Patescibacteria, Cyanobacteria, Planctomycetota, and Verrucomicrobiota abundance were positively correlated with salinity. Linear regression analysis showed that alkalinity was positively correlated with bacterial beta diversity and salinity was negatively correlated with that. In addition, white shrimp aquaculture significantly lowered the alkalinity, which suggests that culture of this species in inland salt-alkaline regions is a potential dealkalization solution.
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Affiliation(s)
- K Li
- College of Marine Ecology and Environment, Shanghai Ocean University, Shanghai, China
| | - S Zhao
- College of Marine Ecology and Environment, Shanghai Ocean University, Shanghai, China
| | - W Guan
- College of Marine Ecology and Environment, Shanghai Ocean University, Shanghai, China
| | - K J Li
- College of Marine Ecology and Environment, Shanghai Ocean University, Shanghai, China
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Banu JR, Kumar G, Chattopadhyay I. Management of microbial enzymes for biofuels and biogas production by using metagenomic and genome editing approaches. 3 Biotech 2021; 11:429. [PMID: 34603908 DOI: 10.1007/s13205-021-02962-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2021] [Accepted: 08/04/2021] [Indexed: 12/16/2022] Open
Abstract
Non-renewable fossil fuels such as bitumen, coal, natural gas, oil shale, and petroleum are depleting over the world owing to unrestricted consumption. Biofuels such as biodiesel, biobutanol, bioethanol, and biogas are considered an eco-friendly and cost-effective alternatives of fossil fuels. For energy sustainability, the production of advanced biofuels is required. The advancement of genetic and metabolic engineering in microbial cells played a significant contribution to biofuels overproduction. Essential approaches such as next-generation sequencing technologies and CRISPR/Cas9-mediated genome editing of microbial cells are required for the mass manufacture of biofuels globally. Advanced "omics" approaches are used to construct effective microorganisms for biofuels manufacturing. A new investigation is required to augment the production of lignocellulosic-based biofuels with minimal use of energy. Advanced areas of metabolic engineering are introduced in the manufacture of biofuels by the use of engineered microbial strains. Genetically modified microorganisms are used for the production of biofuels in large quantities at a low-cost.
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Affiliation(s)
- J Rajesh Banu
- Department of Life Sciences, Central University of Tamil Nadu, Thiruvarur, Tamilnadu India
| | - Gopalakrishnan Kumar
- Faculty of Science and Technology, Institute of Chemistry, Bioscience and Environmental Engineering, University of Stavanger, Forus, Box 8600, 4036 Stavanger, Norway
| | - Indranil Chattopadhyay
- Department of Life Sciences, Central University of Tamil Nadu, Thiruvarur, Tamilnadu India
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Santana-Sánchez A, Lynch F, Sirin S, Allahverdiyeva Y. Nordic cyanobacterial and algal lipids: Triacylglycerol accumulation, chemotaxonomy and bioindustrial potential. PHYSIOLOGIA PLANTARUM 2021; 173:591-602. [PMID: 33928648 DOI: 10.1111/ppl.13443] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The ability to capture and convert sunlight, water and nutrients into useful compounds make photosynthetic microbes ideal candidates for the bio-industrial factories of the future. However, the suitability of isolates from temperate regions to grow under Nordic conditions is questionable. In this work, we explore the chemotaxonomy of Nordic strains of cyanobacteria and one green alga and evaluate their potential as raw materials for the production of lipid-based bio-industrial compounds. Thin-layer chromatography was used to identify the presence of triacylglycerol, which were detected in the majority of strains. Fatty acid methyl ester profiles were analysed to determine the suitability of strains for the production of biodiesel or the production of polyunsaturated fatty acids for the nutraceutical industry. The Nordic Synechococcus strains were unique in demonstrating fatty acid profiles comprised mostly C14:0, C16:0 and C16:1 and lacking polyunsaturated fatty acids. These properties translated to superior predicted biodiesel qualities, including cetane number, cold filter plugging point and oxidative stability compared to the other evaluated strains. Polyunsaturated fatty acids were detected at high levels (38-53%), with Calothrix sp. 336/3 being abundant in two essential fatty acids, linoleic and alpha-linolenic acid (21 and 17%, respectively). Gamma-linoleic acid was the predominant polyunsaturated fatty acid for the remaining strains (13-21%). In addition to assessing the potential of Nordic strains for bio-industrial production, this work also discusses issues such as taxonomy and predictive modelling, which can affect the identification of prospective high-performing strains.
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Affiliation(s)
- Anita Santana-Sánchez
- Molecular Plant Biology, Department of Life Technologies, University of Turku, Turku, Finland
| | - Fiona Lynch
- Molecular Plant Biology, Department of Life Technologies, University of Turku, Turku, Finland
| | - Sema Sirin
- Molecular Plant Biology, Department of Life Technologies, University of Turku, Turku, Finland
| | - Yagut Allahverdiyeva
- Molecular Plant Biology, Department of Life Technologies, University of Turku, Turku, Finland
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Sharma A, Yazdani SS. Microbial engineering to produce fatty alcohols and alkanes. J Ind Microbiol Biotechnol 2021; 48:6169711. [PMID: 33713132 DOI: 10.1093/jimb/kuab011] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Accepted: 11/18/2020] [Indexed: 11/14/2022]
Abstract
Owing to their high energy density and composition, fatty acid-derived chemicals possess a wide range of applications such as biofuels, biomaterials, and other biochemical, and as a consequence, the global annual demand for products has surpassed 2 million tons. With the exhausting petroleum reservoirs and emerging environmental concerns on using petroleum feedstock, it has become indispensable to shift to a renewable-based industry. With the advancement in the field of synthetic biology and metabolic engineering, the use of microbes as factories for the production of fatty acid-derived chemicals is becoming a promising alternative approach for the production of these derivatives. Numerous metabolic approaches have been developed for conditioning the microbes to improve existing or develop new methodologies capable of efficient oleochemical production. However, there still exist several limitations that need to be addressed for the commercial viability of the microbial cell factory production. Though substantial advancement has been made toward successfully producing these fatty acids derived chemicals, a considerable amount of work needs to be done for improving the titers. In the present review, we aim to address the roadblocks impeding the heterologous production, the engineering pathway strategies implemented across the range of microbes in a detailed manner, and the commercial readiness of these molecules of immense application.
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Affiliation(s)
- Ashima Sharma
- Microbial Engineering Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India.,DBT-ICGEB Centre for Advanced Bioenergy Research, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India
| | - Syed Shams Yazdani
- Microbial Engineering Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India.,DBT-ICGEB Centre for Advanced Bioenergy Research, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India
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Plant Biostimulants from Cyanobacteria: An Emerging Strategy to Improve Yields and Sustainability in Agriculture. PLANTS 2021; 10:plants10040643. [PMID: 33805266 PMCID: PMC8065465 DOI: 10.3390/plants10040643] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/27/2021] [Revised: 03/22/2021] [Accepted: 03/23/2021] [Indexed: 12/20/2022]
Abstract
Cyanobacteria can be considered a promising source for the development of new biostimulants as they are known to produce a variety of biologically active molecules that can positively affect plant growth, nutrient use efficiency, qualitative traits of the final product, and increase plant tolerance to abiotic stresses. Moreover, the cultivation of cyanobacteria in controlled and confined systems, along with their metabolic plasticity, provides the possibility to improve and standardize composition and effects on plants of derived biostimulant extracts or hydrolysates, which is one of the most critical aspects in the production of commercial biostimulants. Faced with these opportunities, research on biostimulant properties of cyanobacteria has undergone a significant growth in recent years. However, research in this field is still scarce, especially as regards the number of investigated cyanobacterial species. Future research should focus on reducing the costs of cyanobacterial biomass production and plant treatment and on identifying the molecules that mediate the biostimulant effects in order to optimize their content and stability in the final product. Furthermore, the extension of agronomic trials to a wider number of plant species, different application doses, and environmental conditions would allow the development of tailored microbial biostimulants, thus facilitating the diffusion of these products among farmers.
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You SK, Ko YJ, Shin SK, Hwang DH, Kang DH, Park HM, Han SO. Enhanced CO 2 fixation and lipid production of Chlorella vulgaris through the carbonic anhydrase complex. BIORESOURCE TECHNOLOGY 2020; 318:124072. [PMID: 32911368 DOI: 10.1016/j.biortech.2020.124072] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Revised: 08/27/2020] [Accepted: 08/30/2020] [Indexed: 06/11/2023]
Abstract
Photosynthesis of C. vulgaris shows slow growth and low lipid production due to the low solubility of CO2, and it is thus necessary to increase the dissolved inorganic carbon source to solve this problem. In this study, carbonic anhydrase (CA) was fused with dockerin to form a CA complex by cohesion-dockerin interaction. The CA complex was displayed on the surface of C. vulgaris by a cellulose binding module. The CA complex increased activity and stability compared to those of a single enzyme. Additionally, C. vulgaris showed an average of 1.6-fold rapid growth during log phase through the influence of the CA complex. The bicarbonate produced by the CA complex increased the lipid production about 1.7-fold (23.3%), compared to 13.6% for the control group. The present results suggest that the CA complex successfully enhances the CO2 fixation, which should be an essential study for 4th generation biofuels.
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Affiliation(s)
- Seung Kyou You
- Department of Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Young Jin Ko
- Department of Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Sang Kyu Shin
- Department of Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Dong-Hyeuk Hwang
- Department of Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Dae Hee Kang
- Department of Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Hyeon Min Park
- Department of Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Sung Ok Han
- Department of Biotechnology, Korea University, Seoul 02841, Republic of Korea.
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14
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Sinetova MA, Sidorov RA, Starikov AY, Voronkov AS, Medvedeva AS, Krivova ZV, Pakholkova MS, Bachin DV, Bedbenov VS, Gabrielyan DA, Zayadan BK, Bolatkhan K, Los DA. Assessment of the Biotechnological Potential of Cyanobacterial and Microalgal Strains from IPPAS Culture Collection. APPL BIOCHEM MICRO+ 2020. [DOI: 10.1134/s0003683820070030] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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15
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Zhu Z, Jiang J, Fa Y. Overcoming the Biological Contamination in Microalgae and Cyanobacteria Mass Cultivations for Photosynthetic Biofuel Production. Molecules 2020; 25:molecules25225220. [PMID: 33182530 PMCID: PMC7698126 DOI: 10.3390/molecules25225220] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Revised: 11/06/2020] [Accepted: 11/09/2020] [Indexed: 02/08/2023] Open
Abstract
Microalgae and cyanobacteria have shown significant potential for the development of the next biofuels innovation because of their own characteristics as photosynthetic microorganisms. However, it is confronted with a lot of severe challenges on the economic scaling-up of the microalgae- and cyanobacteria-based biofuels production. One of these major challenges is the lack of a reliable preventing and controlling culture system of biological contamination, which can attack the cell growth or product accumulation causing crashing effects. To increase the commercial viability of microalgae- and cyanobacteria-based biofuels production, overcoming the biological contaminations should be at the top of the priority list. Here, we highlight the importance of two categories of biological contaminations and their controlling strategies in the mass cultivations of microalgae and cyanobacteria, and outline the directions that should be exploited in the future.
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Affiliation(s)
- Zhi Zhu
- The Key Laboratory of Biotechnology for Medicinal Plants of Jiangsu Province and School of Life Science, Jiangsu Normal University, Xuzhou 221116, China;
| | - Jihong Jiang
- The Key Laboratory of Biotechnology for Medicinal Plants of Jiangsu Province and School of Life Science, Jiangsu Normal University, Xuzhou 221116, China;
- Correspondence: (J.J.); (Y.F.)
| | - Yun Fa
- CAS Key Laboratory of Bio-Based Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China
- Correspondence: (J.J.); (Y.F.)
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16
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Comparative Proteomic Profiling of Marine and Freshwater Synechocystis Strains Using Liquid Chromatography-Tandem Mass Spectrometry. JOURNAL OF MARINE SCIENCE AND ENGINEERING 2020. [DOI: 10.3390/jmse8100790] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Freshwater Synechocystis sp. PCC 6803 has been considered to be a platform for the production of the next generation of biofuels and is used as a model organism in various fields. Various genomics, transcriptomics, metabolomics, and proteomics studies have been performed on this strain, whereas marine Synechocystis sp. PCC 7338 has not been widely studied despite its wide distribution. This study analyzed the proteome profiles of two Synechocystis strains using a liquid chromatography–tandem mass spectrometry-based bottom-up proteomic approach. Proteomic profiling of Synechocystis sp. PCC 7338 was performed for the first time with a data-dependent acquisition method, revealing 18,779 unique peptides and 1794 protein groups. A data-independent acquisition method was carried out for the comparative quantitation of Synechocystis sp. PCC 6803 and 7338. Among 2049 quantified proteins, 185 up- and 211 down-regulated proteins were defined in Synechocystis sp. PCC 7338. Some characteristics in the proteome of Synechocystis sp. PCC 7338 were revealed, such as its adaptation to living conditions, including the down-regulation of some photosynthesis proteins, the up-regulation of kdpB, and the use of osmolyte glycine as a substrate in C1 metabolism for the regulation of carbon flow. This study will facilitate further studies on Synechocystis 7338 to define in depth the proteomic differences between it and other Synechocystis strains.
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Gomes Gradíssimo D, Pereira Xavier L, Valadares Santos A. Cyanobacterial Polyhydroxyalkanoates: A Sustainable Alternative in Circular Economy. Molecules 2020; 25:E4331. [PMID: 32971731 PMCID: PMC7571216 DOI: 10.3390/molecules25184331] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Revised: 07/16/2020] [Accepted: 07/21/2020] [Indexed: 01/11/2023] Open
Abstract
Conventional petrochemical plastics have become a serious environmental problem. Its unbridled use, especially in non-durable goods, has generated an accumulation of waste that is difficult to measure, threatening aquatic and terrestrial ecosystems. The replacement of these plastics with cleaner alternatives, such as polyhydroxyalkanoates (PHA), can only be achieved by cost reductions in the production of microbial bioplastics, in order to compete with the very low costs of fossil fuel plastics. The biggest costs are carbon sources and nutrients, which can be appeased with the use of photosynthetic organisms, such as cyanobacteria, that have a minimum requirement for nutrients, and also using agro-industrial waste, such as the livestock industry, which in turn benefits from the by-products of PHA biotechnological production, for example pigments and nutrients. Circular economy can help solve the current problems in the search for a sustainable production of bioplastic: reducing production costs, reusing waste, mitigating CO2, promoting bioremediation and making better use of cyanobacteria metabolites in different industries.
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Affiliation(s)
- Diana Gomes Gradíssimo
- Post Graduation Program in Biotechnology, Institute of Biological Sciences, Universidade Federal do Pará, Augusto Corrêa Street, Guamá, Belém, PA 66075-110, Brazil
- Laboratory of Biotechnology of Enzymes and Biotransformations, Institute of Biological Sciences, Universidade Federal do Pará, Augusto Corrêa Street, Guamá, Belém, PA 66075-110, Brazil;
| | - Luciana Pereira Xavier
- Laboratory of Biotechnology of Enzymes and Biotransformations, Institute of Biological Sciences, Universidade Federal do Pará, Augusto Corrêa Street, Guamá, Belém, PA 66075-110, Brazil;
| | - Agenor Valadares Santos
- Post Graduation Program in Biotechnology, Institute of Biological Sciences, Universidade Federal do Pará, Augusto Corrêa Street, Guamá, Belém, PA 66075-110, Brazil
- Laboratory of Biotechnology of Enzymes and Biotransformations, Institute of Biological Sciences, Universidade Federal do Pará, Augusto Corrêa Street, Guamá, Belém, PA 66075-110, Brazil;
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Mondal S, Kumar V, Singh SP. Oxidative stress measurement in different morphological forms of wild-type and mutant cyanobacterial strains: Overcoming the limitation of fluorescence microscope-based method. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 200:110730. [PMID: 32464439 DOI: 10.1016/j.ecoenv.2020.110730] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2020] [Revised: 04/22/2020] [Accepted: 05/07/2020] [Indexed: 06/11/2023]
Abstract
Monitoring of oxidative stress caused by a wide range of reactive oxygen species (ROS) is essential to have an idea about the fitness and growth of photosynthetic organisms. The imaging-based oxidative stress measurement in cyanobacteria using 2',7'-dichlorodihydrofluorescein diacetate (DCFH-DA) dye has the limitation of small sample size as the only selected number of cells are analyzed to measure the ROS levels. Here, we developed a method for oxidative stress measurement by DCFH-DA and flow cytometer (FCM) using unicellular Synechococcus elongatus PCC 7942 and filamentous Fremyella diplosiphon BK14 cyanobacteria. F. diplosiphon BK14 inherently possess high levels of ROS and showed higher sensitivity to hydrogen peroxide treatment in comparison to S. elongatus PCC 7942. We successfully measured oxidative stress in glutaredoxin lacking strain (Δgrx3) of S. elongatus PCC 7942, and wild-type Synechocystis sp. PCC 6803 using FCM based method. Importantly, ROS were not detected in these two strains of cyanobacteria by fluorescence microscope-based method due to their small spherical morphology. Δgrx3 strain showed high ROS levels in comparison to its wild-type strain. Treatment of abiotic factors such as high PAR in wild-type and Δgrx3 strains of S. elongatus PCC 7942, low PAR or low PAR + UVR in wild-type S. elongatus PCC 7942, and high PAR or high PAR + NaCl in Synechocystis sp. PCC 6803 increased oxidative stress. In summary, the FCM based method can measure ROS levels produced due to physiological conditions associated with genetic changes or abiotic stress in a large population of cells regardless of their morphology. Therefore, the present study shows the usefulness of the method in monitoring the health of organisms in a large scale cultivation system.
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Affiliation(s)
- Soumila Mondal
- Centre of Advanced Study in Botany, Department of Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Vinod Kumar
- Centre of Advanced Study in Botany, Department of Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Shailendra P Singh
- Centre of Advanced Study in Botany, Department of Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India.
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Sacko O, Barnes CL, Greene LH, Lee JW. Survivability of Wild-Type and Genetically Engineered Thermosynechococcus elongatus BP1 with Different Temperature Conditions. APPLIED BIOSAFETY 2020; 25:104-117. [DOI: 10.1177/1535676019896640] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Affiliation(s)
- Oumar Sacko
- Department of Chemistry and Biochemistry, Old Dominion University, Norfolk, VA, USA
- Authors Oumar Sacko and Cherrelle L. Barnes contributed equally to this article
| | - Cherrelle L. Barnes
- Department of Chemistry and Biochemistry, Old Dominion University, Norfolk, VA, USA
- Authors Oumar Sacko and Cherrelle L. Barnes contributed equally to this article
| | - Lesley H. Greene
- Department of Chemistry and Biochemistry, Old Dominion University, Norfolk, VA, USA
| | - James W. Lee
- Department of Chemistry and Biochemistry, Old Dominion University, Norfolk, VA, USA
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20
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Production of polymers by cyanobacteria grown in wastewater: Current status, challenges and future perspectives. N Biotechnol 2020; 55:46-57. [DOI: 10.1016/j.nbt.2019.09.001] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2019] [Revised: 09/07/2019] [Accepted: 09/13/2019] [Indexed: 11/20/2022]
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Issa A, Ali E, Abdel-Basset R, Awad M, Ebied A, Hassan S. The impact of nitrogen concentrations on production and quality of food and feed supplements from three cyanobacteria and potential application in biotechnology. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2020. [DOI: 10.1016/j.bcab.2020.101533] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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22
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Building cell factories for the production of advanced fuels. Biochem Soc Trans 2020; 47:1701-1714. [PMID: 31803925 DOI: 10.1042/bst20190168] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Revised: 11/13/2019] [Accepted: 11/15/2019] [Indexed: 12/31/2022]
Abstract
Synthetic biology-based engineering strategies are being extensively employed for microbial production of advanced fuels. Advanced fuels, being comparable in energy efficiency and properties to conventional fuels, have been increasingly explored as they can be directly incorporated into the current fuel infrastructure without the need for reconstructing the pre-existing set-up rendering them economically viable. Multiple metabolic engineering approaches have been used for rewiring microbes to improve existing or develop newly programmed cells capable of efficient fuel production. The primary challenge in using these approaches is improving the product yield for the feasibility of the commercial processes. Some of the common roadblocks towards enhanced fuel production include - limited availability of flux towards precursors and desired pathways due to presence of competing pathways, limited cofactor and energy supply in cells, the low catalytic activity of pathway enzymes, obstructed product transport, and poor tolerance of host cells for end products. Consequently, despite extensive studies on the engineering of microbial hosts, the costs of industrial-scale production of most of these heterologously produced fuel compounds are still too high. Though considerable progress has been made towards successfully producing some of these biofuels, a substantial amount of work needs to be done for improving the titers of others. In this review, we have summarized the different engineering strategies that have been successfully used for engineering pathways into commercial hosts for the production of advanced fuels and different approaches implemented for tuning host strains and pathway enzymes for scaling up production levels.
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Issa A, Ali E, Abdel-Basset R, Hassan S, Awad M, Ebied AEB. Application of Three Cyanobacteria in Foods and Feeds Biotechnology: Phosphorus Affects. Pak J Biol Sci 2020; 23:55-62. [PMID: 31930883 DOI: 10.3923/pjbs.2020.55.62] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
BACKGROUND AND OBJECTIVE Cyanobacteria grown under abiotic stress affect on some metabolites that used as promising for foods and feeds biotechnology. Thus, the objective of the study was to evaluate the 3 local cyanobacteria isolates for production of foods and feeds under various concentration of phosphorus. MATERIAL AND METHODS Cyanobacteria namely; Anabaena sp., Merismopedia tenuissima and Spirulina platensis were grown photoautotrophically in modified medium. The growth pattern in the medium containing various phosphorus concentrations were followed and harvested around 14 days. RESULTS A decrease in phosphorus concentrations by 50% led to an increase in chlorophyll-a of M. tenuissima and S. platensis. The application of high concentration of phosphorus (+100%) to the culture of Anabaena sp. led to an increase in dry weight and growth rate by 0.382 mg mL-1 and 0.013 h-1, respectively. The deficiency of phosphorus concentrations led to a decrease in carbohydrate contents of Anabaena, Merismopedia and Spirulina with compared to the control culture. In general, the total lipid contents of Anabaena sp. and M. tenuissima were stimulated by phosphorus deficiency. The phosphorus-free media and increase in phosphorus concentration by 100% resulted in an increase in protein fractions such as soluble, insoluble, globulins, prolamines, glutelins and total protein content of Anabaena sp. The application of high concentration of phosphorus (+100%) to the culture of S. platensis led to an increase in total lipid contents in comparison to control. The highest phycobiliprotein contents of S. platensis were recorded at 50% phosphorus deficiency. CONCLUSION Cyanobacteria has a soft cell wall that makes it especially easy to digest and is additionally full of live active enzymes which further enhances metabolism and the efficient intake of nutrients.
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Biofuel Application as a Factor of Sustainable Development Ensuring: The Case of Russia. ENERGIES 2019. [DOI: 10.3390/en12203948] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Diffusion of the biofuels (BF) using is justified by opening up the opportunities for obtaining fuel and energy from previously inaccessible sources and by the existence of energy-deficient regions, in particular in Russia. Works of different scientists on the problems of creating and using BF were the methodological basis of this study. Information on the state and prospects of the development of renewable energy sources in Russian regions was collected from regulatory documents and was obtained by employing a questionnaire survey. For the study of the collected materials, the different methods of comparative analysis, and the methods of expert assessments were used. The results of the Status-Quo analysis of BF production in Russia have shown that the creation of BF performed relatively successfully. However, there are many more perspectives, connected with expanding the utilization of the different raw materials. Also, the analysis of organizational and economic mechanisms applied for production of BF and the obtained data on several organizations-producers allowed for proposing six indexes for the assessment of the BF production effectiveness. It is suggested that BF production in Russia will contribute to the sustainable development of a number of the country’s regions in the near future.
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25
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Ho SH, Chen YD, Li R, Zhang C, Ge Y, Cao G, Ma M, Duan X, Wang S, Ren NQ. N-doped graphitic biochars from C-phycocyanin extracted Spirulina residue for catalytic persulfate activation toward nonradical disinfection and organic oxidation. WATER RESEARCH 2019; 159:77-86. [PMID: 31078754 DOI: 10.1016/j.watres.2019.05.008] [Citation(s) in RCA: 168] [Impact Index Per Article: 33.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Revised: 04/06/2019] [Accepted: 05/03/2019] [Indexed: 06/09/2023]
Abstract
Biochars are low-cost and environmental-friendly materials, which are promising in wastewater treatment. In this study, biochars were manufactured from C-phycocyanin extracted (C-CP) Spirulina residue (SDBC) via thermal pyrolysis. Simultaneously, N-doping was also achieved from the protein in the algae for obtaining a high-performance carbocatalyst for peroxydisulfate (PDS) activation. The SDBC yielded large specific surface areas, nitrogen loading, and good conductivity, which demonstrated excellent oxidation efficiencies toward a wide array of aqueous microcontaminants. An in-depth mechanistic study was performed by integrating selective radical scavenging, solvent exchange (H2O to D2O), diverse organic probes, and electrochemical measurement, unveiling that SDBC/PDS did not rely on free radicals or singlet oxygen but a nonradical pathway. PDS intimately was bonded with a biochar (SDBC 900-acid, pyrolysis at 900 °C) to form a surface reactive complex that subsequently attacked an organic sulfamethoxazole (SMX) adsorbed on the biochar via an electron-transfer regime. During this process, the SDBC 900-acid played versatile roles in PDS activation, organic accumulation and mediating the electron shuttle from SMX to PDS. This nonradical system can maintain a superior oxidation efficiency in complicated water matrix and long-term stable operation. More importantly, the nonradical species in SDBC 900-acid/PDS system were capable of inactivating the bacteria (Escherichia coli) in wastewater. Therefore, the biochar based nonradical system can provide a mild and high-efficiency strategy for disinfection in waste and drinking water by green carbocatalysis. This study provides not only a value-added biochar catalyst for wastewater purification but also the first insight into the bacteria inactivation via nonradical oxidation.
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Affiliation(s)
- Shih-Hsin Ho
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China
| | - Yi-di Chen
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China.
| | - Ruixiang Li
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China
| | - Chaofan Zhang
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China
| | - Yiming Ge
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China
| | - Guoliang Cao
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China
| | - Ming Ma
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China
| | - Xiaoguang Duan
- School of Chemical Engineering, The University of Adelaide, Adelaide, SA, 5005, Australia.
| | - Shaobin Wang
- School of Chemical Engineering, The University of Adelaide, Adelaide, SA, 5005, Australia
| | - Nan-Qi Ren
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China
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Farrokh P, Sheikhpour M, Kasaeian A, Asadi H, Bavandi R. Cyanobacteria as an eco-friendly resource for biofuel production: A critical review. Biotechnol Prog 2019; 35:e2835. [PMID: 31063628 DOI: 10.1002/btpr.2835] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Revised: 04/07/2019] [Accepted: 04/24/2019] [Indexed: 12/26/2022]
Abstract
Cyanobacteria are photosynthetic microorganisms which can be found in various environmental habitats. These photosynthetic bacteria are considered as promising feedstock for the production of the third- and the fourth-generation biofuels. The main subject of this review is highlighting the significant aspects of the biofuel production from cyanobacteria. The most recent investigations about the extraction or separation of the bio-oil from cyanobacteria are also adduced in the present review. Moreover, the genetic engineering of cyanobacteria for improving biofuel production and the impact of bioinformatics studies on the designing better-engineered strains are mentioned. The large-scale biofuel production is challenging, so the economic considerations to provide inexpensive biofuels are also cited. It seems that the future of biofuels is strongly dependent to the following items; understanding the metabolic pathways of the cyanobacterial species, progression in the construction of the engineered cyanobacteria, and inexpensive large-scale cultivation of them.
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Affiliation(s)
- Parisa Farrokh
- Department of cell and molecular biology, School of Biology, Damghan University, Damghan, Iran.,Institute of Biological Sciences, Damghan University, Damghan, Iran
| | - Mojgan Sheikhpour
- Department of Mycobacteriology and Pulmonary Research, Pasteur Institute of Iran, Tehran, Iran.,Microbiology Research Center (MRC), Pasteur Institute of Iran, Tehran, Iran
| | - Alibakhsh Kasaeian
- Faculty of New Science and Technologies, University of Tehran, Tehran, Iran
| | - Hassan Asadi
- Department of Mycobacteriology and Pulmonary Research, Pasteur Institute of Iran, Tehran, Iran
| | - Roya Bavandi
- Branch-Marine Science and Technology Faculty, Islamic Azad University North Tehran, Tehran, Iran
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Garlapati D, Chandrasekaran M, Devanesan A, Mathimani T, Pugazhendhi A. Role of cyanobacteria in agricultural and industrial sectors: an outlook on economically important byproducts. Appl Microbiol Biotechnol 2019; 103:4709-4721. [PMID: 31030286 DOI: 10.1007/s00253-019-09811-1] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Revised: 03/29/2019] [Accepted: 03/31/2019] [Indexed: 01/22/2023]
Abstract
Cyanobacteria are potential organisms, which are used as food, feed and fuel. The unique characters of cyanobacteria include short generation times, their ubiquitous presence and efficient nitrogen fixing potential. Cyanobacteria are unique organisms performing photosynthesis, bioremediation of wastewater, high biomass and biofuel productions etc. They are also used in the treatment of industrial and domestic wastewaters for the utilization or removal of ammonia, phosphates and other heavy metals (Cr, Pb, Co, Cu, Zn). Biomasses of cyanobacteria are used as biofertilizers for the improvement of nutrient or mineral status and water-holding capacity of the soil. The secondary metabolites of cyanobacteria are used in pharmaceuticals, nutraceutical and chemical industries. In the industrial sector, value-added products from cyanobacteria such as pigments, enzymes and exopolysaccharides are being produced in large scales for biomedical and health applications. Age-old applications of cyanobacteria in agroecosystems as biofertilizers (Anabaena sp; Nostoc sp.) and in industrial sectors as food products (Spirulina) have motivated the researchers to come up with much more specific applications of cyanobacteria both in agricultural and in industrial sectors. Therefore, considering the effectiveness and efficiency of cyanobacteria, the present review has enlisted the standout qualities of cyanobacteria and their potential applications in agricultural and industrial sectors for the benefit of human beings and environment.
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Affiliation(s)
- Deviram Garlapati
- National Centre for Coastal Research (NCCR), Ministry of Earth Sciences (MoES), Chennai, Tamil Nadu, 600 100, India
| | - Muthukumar Chandrasekaran
- National Centre for Coastal Research (NCCR), Ministry of Earth Sciences (MoES), Chennai, Tamil Nadu, 600 100, India
| | - ArulAnanth Devanesan
- Department of Food Quality and Safety, Gilat Research Center, Agricultural Research Organization, 85280, Negev, MP, Israel
| | - Thangavel Mathimani
- Department of Energy and Environment, National Institute of Technology, Tiruchirappalli, Tamil Nadu, 620015, India
| | - Arivalagan Pugazhendhi
- Innovative Green Product Synthesis and Renewable Environment Development Research Group, Faculty of Environment and Labour Safety, Ton Duc Thang University, Ho Chi Minh City, Vietnam.
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Mironov KS, Shumskaya M, Sidorov RA, Trofimova MS, Los DA. Membrane physical state and stress regulation in Synechocystis: fluidizing alcohols repress fatty acid desaturation. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018; 96:1007-1017. [PMID: 30194781 DOI: 10.1111/tpj.14086] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2018] [Revised: 09/01/2018] [Accepted: 09/03/2018] [Indexed: 05/16/2023]
Abstract
Cyanobacteria are prokaryotic photosynthetic organisms widely used in biotechnology, photosynthesis and abiotic stress research. There are several cyanobacterial strains modified to produce biofuels, but the influence of alcohols on cyanobacterial cell physiology is poorly understood. Here, we conducted a systematic study of the effects of nine primary aliphatic alcohols and an aromatic benzyl alcohol on both membrane physical state and the expression of genes for fatty acid desaturases (FADs) in a model cyanobacterium Synechocystis sp. strain PCC 6803. Hexan-1-ol was found to have the most membrane fluidizing action among all alcohols studied, with its efficiency correlating with both duration of treatment and alcohol concentration. A prolonged exposure to alcohol results in a continuous loss of unsaturated fatty acids (FAs) followed by cell death, an undesired challenge that should be considered in cyanobacterial biotechnology. We suggest that membrane fluidization is the key component in alcohol stress causing inactivation of FADs and resulting in a lethal depletion of unsaturated FAs. Due to the most pronounced effects of alcohol- and heat-induced membrane fluidization on desB encoding a terminal ω3-FAD, we propose to call desB a 'viscosity gene' in analogy to heat-induced 'fluidity gene' hspA.
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Affiliation(s)
- Kirill S Mironov
- Department of Molecular Biosystems, K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Science, Botanicheskaya Street 35, Moscow, 127276, Russia
| | - Maria Shumskaya
- Department of Biology, School of Natural Sciences, Kean University, 1000 Morris Ave, Union, NJ, 07083, USA
| | - Roman A Sidorov
- Department of Molecular Biosystems, K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Science, Botanicheskaya Street 35, Moscow, 127276, Russia
| | - Marina S Trofimova
- Department of Molecular Biosystems, K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Science, Botanicheskaya Street 35, Moscow, 127276, Russia
| | - Dmitry A Los
- Department of Molecular Biosystems, K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Science, Botanicheskaya Street 35, Moscow, 127276, Russia
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Production of Bioplastic Compounds by Genetically Manipulated and Metabolic Engineered Cyanobacteria. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2018; 1080:155-169. [DOI: 10.1007/978-981-13-0854-3_7] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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Woo HM. Metabolic pathway rewiring in engineered cyanobacteria for solar-to-chemical and solar-to-fuel production from CO 2. Bioengineered 2018; 9:2-5. [PMID: 28430539 PMCID: PMC5972923 DOI: 10.1080/21655979.2017.1317572] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
Abstract
Photoautotrophic cyanobacteria have been developed to convert CO2 to valuable chemicals and fuels as solar-to-chemical (S2C) and solar-to-fuel (S2F) platforms. Here, I describe the rewiring of the metabolic pathways in cyanobacteria to better understand the endogenous carbon flux and to enhance the yield of heterologous products. The plasticity of the cyanobacterial metabolism has been proposed to be advantageous for the development of S2C and S2F processes. The rewiring of the sugar catabolism and of the phosphoketolase pathway in the central cyanobacterial metabolism allowed for an enhancement in the level of target products by redirecting the carbon fluxes. Thus, metabolic pathway rewiring can promote the development of more efficient cyanobacterial cell factories for the generation of feasible S2C and S2F platforms.
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Affiliation(s)
- Han Min Woo
- a Department of Food Science and Biotechnology , Sungkyunkwan University (SKKU) , Jangan-gu, Suwon , Republic of Korea
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31
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Ho SH, Liao JF, Chen CY, Chang JS. Combining light strategies with recycled medium to enhance the economic feasibility of phycocyanin production with Spirulina platensis. BIORESOURCE TECHNOLOGY 2018; 247:669-675. [PMID: 30060398 DOI: 10.1016/j.biortech.2017.09.165] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2017] [Revised: 09/19/2017] [Accepted: 09/23/2017] [Indexed: 06/08/2023]
Abstract
C-phycocyanin (C-PC) produced from Spirulina platensis is of great commercial interest due to its healthcare properties. In this study, light sources and light-dark frequency were manipulated to enhance C-PC productivity of S. platensis. Using white LED resulted in higher C-PC production efficiency when compared to using fluorescent lamps and monochromatic LEDs. Proper adjustment of light-dark efficiency further increased C-PC production efficiency with relatively lower power consumption. In addition, using recycled medium in place of fresh medium proved to be an environmental-friendly and economic strategy for C-PC production with S. platensis. Optimal nitrate supplementation was also employed to improve the C-PC productivity. When grown under optimal culture conditions (i.e., light source, white LED; light-dark frequency, 30:30; recycled medium replacement, 50%; nitrate supplement, 45mM), S. platensis could obtain the highest C-PC content (14.9%) and C-PC productivity (101.1mg/L/d). This performance appears to be superior to that obtained from most related studies.
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Affiliation(s)
- Shih-Hsin Ho
- State Key Laboratory of Urban Water Resource and Environment, School of Municipal and Environmental Engineering, Harbin Institute Technology, Harbin, PR China
| | - Jing-Fu Liao
- Department of Chemical Engineering, National Cheng Kung University, Tainan 701, Taiwan
| | - Chun-Yen Chen
- Center for Bioscience and Biotechnology, National Cheng Kung University, Tainan 701, Taiwan
| | - Jo-Shu Chang
- State Key Laboratory of Urban Water Resource and Environment, School of Municipal and Environmental Engineering, Harbin Institute Technology, Harbin, PR China; Department of Chemical Engineering, National Cheng Kung University, Tainan 701, Taiwan; Research Center for Energy Technology and Strategy, National Cheng Kung University, Tainan 701, Taiwan.
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6S RNA plays a role in recovery from nitrogen depletion in Synechocystis sp. PCC 6803. BMC Microbiol 2017; 17:229. [PMID: 29216826 PMCID: PMC5721685 DOI: 10.1186/s12866-017-1137-9] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2017] [Accepted: 11/27/2017] [Indexed: 12/30/2022] Open
Abstract
Background The 6S RNA is a global transcriptional riboregulator, which is exceptionally widespread among most bacterial phyla. While its role is well-characterized in some heterotrophic bacteria, we subjected a cyanobacterial homolog to functional analysis, thereby extending the scope of 6S RNA action to the special challenges of photoautotrophic lifestyles. Results Physiological characterization of a 6S RNA deletion strain (ΔssaA) demonstrates a delay in the recovery from nitrogen starvation. Significantly decelerated phycobilisome reassembly and glycogen degradation are accompanied with reduced photosynthetic activity compared to the wild type. Transcriptome profiling further revealed that predominantly genes encoding photosystem components, ATP synthase, phycobilisomes and ribosomal proteins were negatively affected in ΔssaA. In vivo pull-down studies of the RNA polymerase complex indicated that the presence of 6S RNA promotes the recruitment of the cyanobacterial housekeeping σ factor SigA, concurrently supporting dissociation of group 2 σ factors during recovery from nitrogen starvation. Conclusions The combination of genetic, physiological and biochemical studies reveals the homologue of 6S RNA as an integral part of the cellular response of Synechocystis sp. PCC 6803 to changing nitrogen availability. According to these results, 6S RNA supports a rapid acclimation to changing nitrogen supply by accelerating the switch from group 2 σ factors SigB, SigC and SigE to SigA-dependent transcription. We therefore introduce the cyanobacterial 6S RNA as a novel candidate regulator of RNA polymerase sigma factor recruitment in Synechocystis sp. PCC 6803. Further studies on mechanistic features of the postulated interaction should shed additional light on the complexity of transcriptional regulation in cyanobacteria. Electronic supplementary material The online version of this article (10.1186/s12866-017-1137-9) contains supplementary material, which is available to authorized users.
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Zavřel T, Očenášová P, Červený J. Phenotypic characterization of Synechocystis sp. PCC 6803 substrains reveals differences in sensitivity to abiotic stress. PLoS One 2017; 12:e0189130. [PMID: 29216280 PMCID: PMC5720811 DOI: 10.1371/journal.pone.0189130] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Accepted: 11/20/2017] [Indexed: 12/24/2022] Open
Abstract
Synechocystis sp. PCC 6803 is a widely used model cyanobacterium, whose substrains can vary on both genotype and phenotype levels. Previously described phenotypic variations include ability of mixotrophic growth, ability of movement on agar plates and variations in pigments composition or cell size. In this study, we report for the first time significant variation among Synechocystis substrains in complex cellular traits such as growth rate, photosynthesis efficiency, cellular dry weight and cellular composition (including protein or carbohydrates content). We also confirmed previously reported differences in cell size. Synechocystis cultures were cultivated in controlled environment of flat panel photobioreactors under red, blue and white light of intensities up to 790 μmol(photons) m-2 s-1, temperatures 23°C–60°C, input CO2 concentrations ranging from 400 to 15 000 ppm and in BG11 cultivation medium with and without addition of NaCl. Three Synechocystis substrains were used for the comparative experiments: GT-L, GT-B (Brno, CZ) and PCC-B (Brno, CZ). Growth rates of Synechocystis GT-B were inhibited under high intensities of red light (585–670 nm), and growth rates of both substrains GT-B and PCC-B were inhibited under photons of wavelengths 485–585 nm and 670–700 nm. Synechocystis GT-B was more sensitive to low temperatures than the other two tested substrains, and Synechocystis GT-L was sensitive to the presence of NaCl in the cultivation media. The results suggest that stress sensitivity of commonly used Synechocystis substrains can strongly vary, similarly as glucose tolerance or motility as reported previously. Our study further supports the previous statement that emphasizes importance of proper Synechocystis substrains selection and awareness of phenotypical differences among Synechocystis substrains which is crucial for comparative and reproducible research. This is highly relevant for studies related to stress physiology and development of sustainable biotechnological applications.
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Affiliation(s)
- Tomáš Zavřel
- Department of Adaptive Biotechnologies, Global Change Research Institute CAS, Brno, Czech Republic
- * E-mail:
| | - Petra Očenášová
- Department of Adaptive Biotechnologies, Global Change Research Institute CAS, Brno, Czech Republic
| | - Jan Červený
- Department of Adaptive Biotechnologies, Global Change Research Institute CAS, Brno, Czech Republic
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Serrano DP, Melero JA, Morales G, Iglesias J, Pizarro P. Progress in the design of zeolite catalysts for biomass conversion into biofuels and bio-based chemicals. CATALYSIS REVIEWS-SCIENCE AND ENGINEERING 2017. [DOI: 10.1080/01614940.2017.1389109] [Citation(s) in RCA: 84] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- David P. Serrano
- Thermochemical Processes Unit, IMDEA Energy Institute, Móstoles, Madrid, Spain
- Chemical and Environmental Engineering Group, ESCET, Rey Juan Carlos University, Móstoles, Madrid, Spain
| | - Juan A. Melero
- Chemical and Environmental Engineering Group, ESCET, Rey Juan Carlos University, Móstoles, Madrid, Spain
| | - Gabriel Morales
- Chemical and Environmental Engineering Group, ESCET, Rey Juan Carlos University, Móstoles, Madrid, Spain
| | - Jose Iglesias
- Chemical and Environmental Engineering Group, ESCET, Rey Juan Carlos University, Móstoles, Madrid, Spain
| | - Patricia Pizarro
- Thermochemical Processes Unit, IMDEA Energy Institute, Móstoles, Madrid, Spain
- Chemical and Environmental Engineering Group, ESCET, Rey Juan Carlos University, Móstoles, Madrid, Spain
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CORDEIRO RAQUELS, VAZ IZABELAC, MAGALHÃES SÉRGIAM, BARBOSA FRANCISCOA. Effects of nutritional conditions on lipid production by cyanobacteria. ACTA ACUST UNITED AC 2017; 89:2021-2031. [DOI: 10.1590/0001-3765201720150707] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2015] [Accepted: 03/18/2016] [Indexed: 11/22/2022]
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Choix FJ, Snell-Castro R, Arreola-Vargas J, Carbajal-López A, Méndez-Acosta HO. CO 2 Removal from Biogas by Cyanobacterium Leptolyngbya sp. CChF1 Isolated from the Lake Chapala, Mexico: Optimization of the Temperature and Light Intensity. Appl Biochem Biotechnol 2017; 183:1304-1322. [PMID: 28488119 DOI: 10.1007/s12010-017-2499-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2017] [Accepted: 04/26/2017] [Indexed: 11/30/2022]
Abstract
In the present study, the capacity of the cyanobacterium Leptolyngbya sp. CChF1 to remove CO2 from real and synthetic biogas was evaluated. The identification of the cyanobacterium, isolated from the lake Chapala, was carried out by means of morphological and molecular analyses, while its potential for CO2 removal from biogas streams was evaluated by kinetic experiments and optimized by a central composite design coupled to a response surface methodology. Results demonstrated that Leptolyngbya sp. CChF1 is able to remove CO2 and grow indistinctly in real or synthetic biogas streams, showing tolerance to high concentrations of CO2 and CH4, 25 and 75%, respectively. The characterization of the biomass composition at the end of the kinetic assays revealed that the main accumulated by-products under both biogas streams were lipids, followed by proteins and carbohydrates. Regarding the optimization experiments, light intensity and temperature were the studied variables, while synthetic biogas was the carbon source. Results showed that light intensity was significant for CO2 capture efficiency (p = 0.0290), while temperature was significant for biomass production (p = 0.0024). The predicted CO2 capture efficiency under optimal conditions (27.1 °C and 920 lx) was 93.48%. Overall, the results of the present study suggest that Leptolyngbya sp. CChF1 is a suitable candidate for biogas upgrading.
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Affiliation(s)
- Francisco J Choix
- Departamento de Ingeniería Química, CUCEI-Universidad de Guadalajara, Blvd. M. García Barragán 1421, 44430, Guadalajara, JAL, Mexico
- CONACYT Research Fellow, CUCEI-Universidad de Guadalajara, Blvd. M. García Barragán 1421, 44430, Guadalajara, JAL, Mexico
| | - Raúl Snell-Castro
- Departamento de Ingeniería Química, CUCEI-Universidad de Guadalajara, Blvd. M. García Barragán 1421, 44430, Guadalajara, JAL, Mexico
| | - Jorge Arreola-Vargas
- Departamento de Ingeniería Química, CUCEI-Universidad de Guadalajara, Blvd. M. García Barragán 1421, 44430, Guadalajara, JAL, Mexico
- División de Procesos Industriales, Universidad Tecnológica de Jalisco, Luis J. Jiménez 577-1 de Mayo, 44979, Guadalajara, JAL, Mexico
| | - Alberto Carbajal-López
- Departamento de Ingeniería Química, CUCEI-Universidad de Guadalajara, Blvd. M. García Barragán 1421, 44430, Guadalajara, JAL, Mexico
| | - Hugo O Méndez-Acosta
- Departamento de Ingeniería Química, CUCEI-Universidad de Guadalajara, Blvd. M. García Barragán 1421, 44430, Guadalajara, JAL, Mexico.
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Xia PF, Zhang GC, Walker B, Seo SO, Kwak S, Liu JJ, Kim H, Ort DR, Wang SG, Jin YS. Recycling Carbon Dioxide during Xylose Fermentation by Engineered Saccharomyces cerevisiae. ACS Synth Biol 2017; 6:276-283. [PMID: 27744692 DOI: 10.1021/acssynbio.6b00167] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Global climate change caused by the emission of anthropogenic greenhouse gases (GHGs) is a grand challenge to humanity. To alleviate the trend, the consumption of fossil fuels needs to be largely reduced and alternative energy technologies capable of controlling GHG emissions are anticipated. In this study, we introduced a synthetic reductive pentose phosphate pathway (rPPP) into a xylose-fermenting Saccharomyces cerevisiae strain SR8 to achieve simultaneous lignocellulosic bioethanol production and carbon dioxide recycling. Specifically, ribulose-1,5-bisphosphate carboxylase/oxygenase from Rhodospirillum rubrum and phosphoribulokinase from Spinacia oleracea were introduced into the SR8 strain. The resulting strain with the synthetic rPPP was able to exhibit a higher yield of ethanol and lower yields of byproducts (xylitol and glycerol) than a control strain. In addition, the reduced release of carbon dioxide by the engineered strain was observed during xylose fermentation, suggesting that the carbon dioxide generated by pyruvate decarboxylase was partially reassimilated through the synthetic rPPP. These results demonstrated that recycling of carbon dioxide from the ethanol fermentation pathway in yeast can be achieved during lignocellulosic bioethanol production through a synthetic carbon conservative metabolic pathway. This strategy has a great potential to alleviate GHG emissions during the production of second-generation ethanol.
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Affiliation(s)
- Peng-Fei Xia
- School
of Environmental Science and Engineering, Shandong University, 27 Shanda Nanlu, Jinan 250100, People’s Republic of China
- Carl
R. Woese Institute for Genomic Biology, University of Illinois at Urbana−Champaign, 1206 West Gregory Drive, Urbana, Illinois 61801, United States
| | - Guo-Chang Zhang
- Department
of Food Science and Human Nutrition, University of Illinois at Urbana−Champaign, 905 South Goodwin Avenue, Urbana, Illinois 61801, United States
| | - Berkley Walker
- Carl
R. Woese Institute for Genomic Biology, University of Illinois at Urbana−Champaign, 1206 West Gregory Drive, Urbana, Illinois 61801, United States
- Photosynthetic
Research Unit, United States Department of Agriculture, Urbana Illinois 61801, United States
| | - Seung-Oh Seo
- Department
of Food Science and Human Nutrition, University of Illinois at Urbana−Champaign, 905 South Goodwin Avenue, Urbana, Illinois 61801, United States
| | - Suryang Kwak
- Carl
R. Woese Institute for Genomic Biology, University of Illinois at Urbana−Champaign, 1206 West Gregory Drive, Urbana, Illinois 61801, United States
- Department
of Food Science and Human Nutrition, University of Illinois at Urbana−Champaign, 905 South Goodwin Avenue, Urbana, Illinois 61801, United States
| | - Jing-Jing Liu
- Carl
R. Woese Institute for Genomic Biology, University of Illinois at Urbana−Champaign, 1206 West Gregory Drive, Urbana, Illinois 61801, United States
| | - Heejin Kim
- Carl
R. Woese Institute for Genomic Biology, University of Illinois at Urbana−Champaign, 1206 West Gregory Drive, Urbana, Illinois 61801, United States
- Department
of Food Science and Human Nutrition, University of Illinois at Urbana−Champaign, 905 South Goodwin Avenue, Urbana, Illinois 61801, United States
| | - Donald R. Ort
- Carl
R. Woese Institute for Genomic Biology, University of Illinois at Urbana−Champaign, 1206 West Gregory Drive, Urbana, Illinois 61801, United States
- Photosynthetic
Research Unit, United States Department of Agriculture, Urbana Illinois 61801, United States
- Department
of Plant Biology, University of Illinois at Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Shu-Guang Wang
- School
of Environmental Science and Engineering, Shandong University, 27 Shanda Nanlu, Jinan 250100, People’s Republic of China
| | - Yong-Su Jin
- Carl
R. Woese Institute for Genomic Biology, University of Illinois at Urbana−Champaign, 1206 West Gregory Drive, Urbana, Illinois 61801, United States
- Department
of Food Science and Human Nutrition, University of Illinois at Urbana−Champaign, 905 South Goodwin Avenue, Urbana, Illinois 61801, United States
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Chen Y, Taton A, Go M, London RE, Pieper LM, Golden SS, Golden JW. Self-replicating shuttle vectors based on pANS, a small endogenous plasmid of the unicellular cyanobacterium Synechococcus elongatus PCC 7942. Microbiology (Reading) 2016; 162:2029-2041. [DOI: 10.1099/mic.0.000377] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Affiliation(s)
- You Chen
- Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
| | - Arnaud Taton
- Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
| | - Michaela Go
- Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
| | - Ross E. London
- Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
| | - Lindsey M. Pieper
- Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
| | - Susan S. Golden
- Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
| | - James W. Golden
- Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
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Draft Genome Sequence of Cyanobacterium sp. Strain IPPAS B-1200 with a Unique Fatty Acid Composition. GENOME ANNOUNCEMENTS 2016; 4:4/6/e01306-16. [PMID: 27856596 PMCID: PMC5114388 DOI: 10.1128/genomea.01306-16] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Here, we report the draft genome of Cyanobacterium sp. IPPAS strain B-1200, isolated from Lake Balkhash, Kazakhstan, and characterized by the unique fatty acid composition of its membrane lipids, which are enriched with myristic and myristoleic acids. The approximate genome size is 3.4 Mb, and the predicted number of coding sequences is 3,119.
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Johnson TJ, Gibbons JL, Gu L, Zhou R, Gibbons WR. Molecular genetic improvements of cyanobacteria to enhance the industrial potential of the microbe: A review. Biotechnol Prog 2016; 32:1357-1371. [DOI: 10.1002/btpr.2358] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2016] [Revised: 08/30/2016] [Indexed: 12/17/2022]
Affiliation(s)
- Tylor J. Johnson
- Dept. of Biology and MicrobiologySouth Dakota State UniversityBrookings SD57007
- Dept. of MicrobiologyThe University of TennesseeKnoxville TN37996
| | - Jaimie L. Gibbons
- Dept. of Biology and MicrobiologySouth Dakota State UniversityBrookings SD57007
| | - Liping Gu
- Dept. of Biology and MicrobiologySouth Dakota State UniversityBrookings SD57007
| | - Ruanbao Zhou
- Dept. of Biology and MicrobiologySouth Dakota State UniversityBrookings SD57007
| | - William R. Gibbons
- Dept. of Biology and MicrobiologySouth Dakota State UniversityBrookings SD57007
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Zavřel T, Červený J, Knoop H, Steuer R. Optimizing cyanobacterial product synthesis: Meeting the challenges. Bioengineered 2016; 7:490-496. [PMID: 27420605 PMCID: PMC5241762 DOI: 10.1080/21655979.2016.1207017] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
Abstract
The synthesis of renewable bioproducts using photosynthetic microorganisms holds great promise. Sustainable industrial applications, however, are still scarce and the true limits of phototrophic production remain unknown. One of the limitations of further progress is our insufficient understanding of the quantitative changes in photoautotrophic metabolism that occur during growth in dynamic environments. We argue that a proper evaluation of the intra- and extracellular factors that limit phototrophic production requires the use of highly-controlled cultivation in photobioreactors, coupled to real-time analysis of production parameters and their evaluation by predictive computational models. In this addendum, we discuss the importance and challenges of systems biology approaches for the optimization of renewable biofuels production. As a case study, we present the utilization of a state-of-the-art experimental setup together with a stoichiometric computational model of cyanobacterial metabolism for quantitative evaluation of ethylene production by a recombinant cyanobacterium Synechocystis sp. PCC 6803.
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Affiliation(s)
- Tomáš Zavřel
- a Department of Adaptive Biotechnologies , Global Change Research Institute, Academy of Science of the Czech Republic , Drásov , Czech Republic
| | - Jan Červený
- a Department of Adaptive Biotechnologies , Global Change Research Institute, Academy of Science of the Czech Republic , Drásov , Czech Republic
| | - Henning Knoop
- b Institut für Theoretische Biologie, Humboldt-Universität zu Berlin , Berlin , Germany
| | - Ralf Steuer
- b Institut für Theoretische Biologie, Humboldt-Universität zu Berlin , Berlin , Germany
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Armshaw P, Carey D, Sheahan C, Pembroke JT. Utilising the native plasmid, pCA2.4, from the cyanobacterium Synechocystis sp. strain PCC6803 as a cloning site for enhanced product production. BIOTECHNOLOGY FOR BIOFUELS 2015; 8:201. [PMID: 26628915 PMCID: PMC4665902 DOI: 10.1186/s13068-015-0385-x] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2015] [Accepted: 11/16/2015] [Indexed: 05/25/2023]
Abstract
BACKGROUND The use of photosynthetic autotrophs and in particular the model organism Synechocystis PCC6803 is receiving much attention for the production of sustainable biofuels and other economically useful products through metabolic engineering. Optimisation of metabolic-engineered organisms for high-level sustained production of product is a key element in the manipulation of this organism. A limitation to the utilisation of metabolically-engineered Synechocystis PCC6803 is the availability of strong controllable promoters and stable gene dosage methods for maximising gene expression and subsequent product formation following genetic manipulation. RESULTS A native Synechocystis PCC6803 small plasmid, pCA2.4, is consistently maintained at a copy level of up to 7 times that of the polyploid chromosome. As this plasmid is stable during cell division, it is potentially an ideal candidate for maximising gene dosage levels within the organism. Here, we describe the construction of a novel expression vector generated from the native plasmid, pCA2.4. To investigate the feasibility of this new expression system, a yellow fluorescent protein (YFP) encoding gene was cloned downstream of the strong Ptrc promoter and integrated into a predicted neutral site within the pCA2.4 plasmid. The stability of the integrated construct was monitored over time compared to a control strain containing an identical YFP-expressing construct integrated at a known neutral site in a chromosomal location. CONCLUSIONS A significantly higher fluorescence level of the yellow fluorescent protein was observed when its encoded gene was integrated into the pCA2.4 native plasmid when compared to the isogenic chromosomally integrated control strain. On average, a minimum of 20-fold higher fluorescence level could be achieved from integration into the native plasmid. Fluorescence was also monitored as a function of culture time and demonstrated to be stable over multiple sub-cultures even after the removal of selective pressure. Therefore, the native small plasmid, pCA2.4 may be utilised to stably increase gene expression levels in Synechocystis PCC6803. With the complementary utilisation of an inducible promoter system, rapid generation of commodity-producing Synechocystis PCC6803 strains having high level, controlled expression may be more achievable.
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Affiliation(s)
- Patricia Armshaw
- />Molecular and Structural Biochemistry Laboratory, Department of Chemical and Environmental Sciences; Materials and Surface Science Institute, University of Limerick, Limerick, Ireland
| | - Dawn Carey
- />Molecular and Structural Biochemistry Laboratory, Department of Chemical and Environmental Sciences; Materials and Surface Science Institute, University of Limerick, Limerick, Ireland
| | - Con Sheahan
- />Department of Manufacturing and Operations Engineering, Faculty of Science and Engineering, University of Limerick, Limerick, Ireland
| | - J. Tony Pembroke
- />Molecular and Structural Biochemistry Laboratory, Department of Chemical and Environmental Sciences; Materials and Surface Science Institute, University of Limerick, Limerick, Ireland
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