Environmental safety and biosafety in construction biotechnology

Microbial induce carbonate precipitation derive bio-concrete formation: A sustainable solution for carbon sequestration and eco-friendly construction

The microbial-induced calcium carbonate precipitation (MICP) technique has high potential in the development of bio-concrete, enhancing the strength, durability, and self-healing properties of construction materials. In this review work, we have explored the crucial role of microorganisms in carbon sequestration, microbial methods in CaCO3 synthesis, and the application of bio-concrete formation, based on the SCOPUS database from 2010 to 2024. The production of construction materials consumes a significant amount of energy, which can emit high amounts of carbon dioxide (CO2) into the atmosphere. As a sustainable solution, researchers are working to introduce novel construction biomaterials through MICP, which play a key role in CO2 sequestration to address this issue. Herein, microorganisms (bacteria) can utilize CO2 through multiple absorption processes, converting it into value-added compounds or inducing CaCO3 precipitation. For example, specific bacteria like Bacillus cereus, Bacillus sphaericus, Bacillus pasteurii, Bacillus subtilis, and Bacillus megatherium are known for their capability to thrive in alkaline conditions and play a key role in bio-concrete formation. Furthermore, it has been highlighted that the bio-concrete ability to sequester CO2 through the carbonation process, emphasizes the roles of urease activity and carbonic anhydrase (CA) in bio-concrete. Overall, this paper provides a complete synopsis of recent research on the formation of bio-concrete through MICP and the various elements influencing the technique, including cementation solution, temperature, injection, pH, and bacteria. This suggests that emerging trends in bio-concrete utilization could significantly reduce CO2 emissions while enhancing the strength of non-reinforced concrete.

Shelf-Stable Sporosarcina pasteurii Formulation for Scalable Laboratory and Field-Based Production of Biocement

Biocement is an environmentally friendly alternative to traditional cement that is produced via microbially induced calcium carbonate precipitation (MICP) and has great potential to mitigate the environmental harms of cement and concrete use. Current production requires on-site bacterial cultivation and the application of live culture to target materials, lacking the convenience of stable formulas that enable broad adoption and application by nonscientific professionals. Here, we report the development of a dry shelf-stable formulation of Sporosarcina pasteurii, the model organism for biocement production. At laboratory scale, when inoculated at an equivalent concentration of viable cells, we show that this formulation produces biocement equal in strength to that produced using live cell cultures. We further demonstrate that this formulation forms biocement in the field within 24 h, leading to ground improvement with increased bearing capacity. These results illustrate that preserved, shelf-stable bacteria can contribute to rapid biocement production and can be adopted for scaled geotechnical and construction purposes.

Ecofriendly solidification of sand using microbially induced calcium phosphate precipitation

This study introduces microbiologically induced calcium phosphate precipitation (MICPP) as a novel and environmentally sustainable method of soil stabilization. Using Limosilactobacillus sp., especially NBRC 14511 and fish bone solution (FBS) extracted from Tuna fish bones, the study was aimed at testing the feasibility of calcium phosphate compounds (CPCs) deposition and sand stabilization. Dynamic changes in pH and calcium ion (Ca2+) concentration during the precipitation experiments affected the precipitation and sequential conversion of dicalcium phosphate dihydrate (DCPD) to hydroxyapatite (HAp), which was confirmed by XRD and SEM analysis. Sand solidification experiments demonstrated improvements in unconfined compressive strength (UCS), especially at higher Urea/Ca2+ ratios. The UCS values obtained were 10.35 MPa at a ratio of 2.0, 3.34 MPa at a ratio of 1.0, and 0.43 MPa at a ratio of 0.5, highlighting the advantages of MICPP over traditional methods. Microstructural analysis further clarified the mineral composition, demonstrating the potential of MICPP in environmentally friendly soil engineering. The study highlights the promise of MICPP for sustainable soil stabilization, offering improved mechanical properties and reducing environmental impact, paving the way for novel geotechnical practices.

A state-of-the-art review on interactive mechanisms and multi-scale application of biopolymers (BPs) in geo-improvement and vegetation growth

The global trend toward sustainable development, coupled with growing concerns about environmental pollution and the depletion of fossil energy resources, has contributed to the widespread implementation of biopolymers (BPs) as bio-solutions for geo-infrastructures stabilization. In this respect, previous attempts proved that soil treatment with BP can guarantee the strength improvement of geo-materials by satisfying environmental standards. However, the applications, mechanisms, and interactions of BPs within geo-environments need more investigations on their suitability for specific sites, long-term durability, and economic viability. The present study aims to provide an in-depth and up-to-date analysis of BPs and outline potential future paths toward BP applications. To this end, after examining the process of producing BPs, we investigate bio-physicochemical behavior and their function mechanism within the soil matrix. In addition, the impact of environmental conditions on soil stabilization with BPs is evaluated. Finally, some recommendations are offered for selecting the types and doses of BPs to improve soil against erosion and to obtain high hydrodynamic resistance. The results outline that bio-chemical mechanisms (including bio-cementing, bio-clogging, bio-encapsulation, and bio-coating) play significant roles in stabilizing cohesive and non-cohesive soil properties. Besides, the findings suggest that the efficacy of BPs depends upon various factors, including the composition and concentration of BPs, soil characteristics, and the magnitude of electrostatic and van der Waals forces formed during bio-chemo-reaction, biocrystallization, and bio-gel production. Between various BPs, using Xanthan gum (XG) and Guar gum (GG) exhibited optimal efficacy, enhancing mechanical strength by up to 300%. Furthermore, BPs concurrently reduced permeability, erosion, compressibility, and shrinkage characteristics. Applying BPs in soils improves germination and vegetation growth, lowers the wilting rate, and reduces soil acidity (considering their natural origin). Overall, selecting suitable BPs was found to be dependent on key factors, including temperature, curing time, and pH. The findings from this study can provide a scientific foundation for planning, constructing and preserving of bio-geo-structures in various construction sites.

Use of buffer treatment to utilize local non-alkali tolerant bacteria in microbial induced calcium carbonate sedimentation in concrete crack repair

Concrete often suffers cracks due to its low tensile strength. The repair process can vary ranging from surface coating, grouting, and strengthening. Microbial induced calcium carbonate sedimentation process (MICP) is a process of utilizing non-pathogenic bacteria to produce calcium carbonate through its urease activity in crack repair (filling). It is known as an alternative crack repair method that does not utilize Portland cement. In general, the bacteria used in MICP are alkali tolerant bacteria that have a higher chance of surviving the high alkalinity environment in concrete. However, in some regions, alkali tolerant bacteria are difficult to acquire and unavailable locally. This study introduced a technique to utilize non-alkali tolerant bacteria in MICP using buffer treatment. Instead of injecting bacteria directly onto the crack surface, the buffer solution was applied onto the crack surface prior to the bacteria injection. Results from the laboratory indicated a higher bacteria survival rate when the buffer treatment was applied to the medium. For the crack filling, with the buffer treatment, the crack was completely filled within 21-28 days. The microstructure results also showed that the crystal deposits from both laboratory and crack surface were similar in both physical appearance and phase composition.

State-of-the-art review of soil erosion control by MICP and EICP techniques: Problems, applications, and prospects

In recent years, the application of microbially induced calcite precipitation (MICP) and enzyme-induced carbonate precipitation (EICP) techniques have been extensively studied to mitigate soil erosion, yielding substantial achievements in this regard. This paper presents a comprehensive review of the recent progress in erosion control by MICP and EICP techniques. To further discuss the effectiveness of erosion mitigation in-depth, the estimation methods and characterization of erosion resistance were initially compiled. Moreover, factors affecting the erosion resistance of MICP/EICP-treated soil were expounded, spanning from soil properties to treatment protocols and environmental conditions. The development of optimization and upscaling in erosion mitigation via MICP/EICP was also included in this review. In addition, this review discussed the limitations and correspondingly proposed prospective applications of erosion control via the MICP/EICP approach. The current review presents up-to-date information on the research activities for improving erosion resistance by MICP/EICP, aiming at providing insights for interdisciplinary researchers and guidance for promoting this method to further applications in erosion mitigation.

Microbially Induced Calcium Carbonate Precipitation by Sporosarcina pasteurii: a Case Study in Optimizing Biological CaCO3 Precipitation

Current production of traditional concrete requires enormous energy investment that accounts for approximately 5 to 8% of the world's annual CO2 production. Biocement is a building material that is already in industrial use and has the potential to rival traditional concrete as a more convenient and more environmentally friendly alternative. Biocement relies on biological structures (enzymes, cells, and/or cellular superstructures) to mineralize and bind particles in aggregate materials (e.g., sand and soil particles). Sporosarcina pasteurii is a workhorse organism for biocementation, but most research to date has focused on S. pasteurii as a building material rather than a biological system. In this review, we synthesize available materials science, microbiology, biochemistry, and cell biology evidence regarding biological CaCO3 precipitation and the role of microbes in microbially induced calcium carbonate precipitation (MICP) with a focus on S. pasteurii. Based on the available information, we provide a model that describes the molecular and cellular processes involved in converting feedstock material (urea and Ca2+) into cement. The model provides a foundational framework that we use to highlight particular targets for researchers as they proceed into optimizing the biology of MICP for biocement production.

Naturally Derived Cements Learned from the Wisdom of Ancestors: A Literature Review Based on the Experiences of Ancient China, India and Rome

For over a thousand years, many ancient cements have remained durable despite long-term exposure to atmospheric or humid agents. This review paper summarizes technologies of worldwide ancient architectures which have shown remarkable durability that has preserved them over thousands of years of constant erosion. We aim to identify the influence of organic and inorganic additions in altering cement properties and take these lost and forgotten technologies to the production frontline. The types of additions were usually decided based on the local environment and purpose of the structure. The ancient Romans built magnificent structures by making hydraulic cement using volcanic ash. The ancient Chinese introduced sticky rice and other local materials to improve the properties of pure lime cement. A variety of organic and inorganic additions used in traditional lime cement not only changes its properties but also improves its durability for centuries. The benefits they bring to cement may also be useful in enzyme-induced carbonate precipitation (EICP) and microbially induced carbonate precipitation (MICP) fields. For instance, sticky rice has been confirmed to play a crucial role in regulating calcite crystal growth and providing interior hydrophobic conditions, which contribute to improving the strength and durability of EICP- and MICP-treated samples in a sustainable way.

State-of-the-Art Review on Engineering Uses of Calcium Phosphate Compounds: An Eco-Friendly Approach for Soil Improvement

Greenhouse gas emissions are a critical problem nowadays. The cement manufacturing sector alone accounts for 8% of all human-generated emissions, and as the world's population grows and globalization intensifies, this sector will require significantly more resources. In order to fulfill the need of geomaterials for construction and to reduce carbon dioxide emissions into the atmosphere, conventional approaches to soil reinforcement need to be reconsidered. Calcium phosphate compounds (CPCs) are new materials that have only recently found their place in the soil reinforcement field. Its eco-friendly, non-toxic, reaction pathway is highly dependent on the pH of the medium and the concentration of components inside the solution. CPCs has advantages over the two most common environmental methods of soil reinforcement, microbial-induced carbonate precipitation (MICP) and enzyme induced carbonate precipitation (EICP); with CPCs, the ammonium problem can be neutralized and thus allowed to be applied in the field. In this review paper, the advantages and disadvantages of the engineering uses of CPCs for soil improvement have been discussed. Additionally, the process of how CPCs perform has been studied and an analysis of existing studies related to soil reinforcement by CPC implementation was conducted.

Relationship between Bacterial Contribution and Self-Healing Effect of Cement-Based Materials

The civil research community has been attracted to self-healing bacterial-based concrete as a potential solution in the economy 4.0 era. This concept provides more sustainable material with a longer lifetime due to the reduction of crack appearance and the need for anthropogenic impact. Regardless of the achievements in this field, the gap in the understanding of the importance of the bacterial role in self-healing concrete remains. Therefore, understanding the bacterial life cycle in the self-healing effect of cement-based materials and selecting the most important relationship between bacterial contribution, self-healing effect, and material characteristics through the process of microbiologically (bacterially) induced carbonate precipitation is just the initial phase for potential applications in real environmental conditions. The concept of this study offers the possibility to recognize the importance of the bacterial life cycle in terms of application in extreme conditions of cement-based materials and maintaining bacterial roles during the self-healing effect.

A potential microbiological approach to the evaluation of earthquake-induced soil liquefaction

Earthquakes occur thousands of times every day around the world. They are naturally destructive seismic events and often result in soil liquefaction. Soil microbiota plays a vital role in soil environments and may serve as an effective indicator to assess soil liquefaction after earthquakes. This study aimed to detect the microbial community abundance and composition in soil samples of different depths. Soil samples were collected in Southern Taiwan immediately after the 2010 earthquake. Their physical characteristics were determined, and their microbial communities were analyzed through 16S amplicon sequencing. The results revealed that Nitrospirae phylum dominated in the liquefied layer. In particular, the genus HB118, dominant in the liquefied layer, was not detected at other soil depths or in the expelled liquefied soil. This finding not only provides valuable insights into changes in microbial community composition at different soil depths after earthquakes but also suggests a useful indicator for monitoring liquefied soil.

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This study characterized the microbial composition of liquefied soil after an earthquake

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Most abundant phylum Nitrospirae found in liquefied soil if 3 most abundant phyla removed

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HB118 spp is correlated with liquefied soil

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We set up the alternative monitoring methods of soil liquefaction after seismic events

Calcifying Bacteria Flexibility in Induction of CaCO3 Mineralization

Microbially induced CaCO₃ precipitation (MICP) is considered as an alternative green technology for cement self-healing and a basis for the development of new biomaterials. However, some issues about the role of bacteria in the induction of biogenic CaCO₃ crystal nucleation, growth and aggregation are still debatable. Our aims were to screen for ureolytic calcifying microorganisms and analyze their MICP abilities during their growth in urea-supplemented and urea-deficient media. Nine candidates showed a high level of urease specific activity, and a sharp increase in the urea-containing medium pH resulted in efficient CaCO₃ biomineralization. In the urea-deficient medium, all ureolytic bacteria also induced CaCO₃ precipitation although at lower pH values. Five strains (B. licheniformis DSMZ 8782, B. cereus 4b, S. epidermidis 4a, M. luteus BS52, M. luteus 6) were found to completely repair micro-cracks in the cement samples. Detailed studies of the most promising strain B. licheniformis DSMZ 8782 revealed a slower rate of the polymorph transformation in the urea-deficient medium than in urea-containing one. We suppose that a ureolytic microorganism retains its ability to induce CaCO₃ biomineralization regardless the origin of carbonate ions in a cell environment by switching between mechanisms of urea-degradation and metabolism of calcium organic salts.

Genetic Engineering-Facilitated Coassembly of Synthetic Bacterial Cells and Magnetic Nanoparticles for Efficient Heavy Metal Removal

Heavy-metal pollution is becoming a worldwide problem severely threatening our health and ecosystem. In this study, we constructed a genetic-engineering-driven coassembly of synthetic bacterial cells and magnetic nanoparticles (MNPs) for capturing heavy metals. The Escherichia coli cells were genetically engineered by introducing a de novo synthetic heavy-metal-capturing gene (encoding a protein SynHMB containing a six-histidine tag, two cystine-rich peptides, and a metallothionein sequence) and a synthetic type VI secretory system (T6SS) cluster of Pseudomonas putida, endowing the synthetic cells (SynEc2) with high ability of displaying the heavy-metal-capturing SynHMB on cell surface. MNPs were synthesized by a coprecipitation method and further modified by polyethylenimine (PEI) and diethylenetriaminepentaacetic acid (DTPA). Owing to the surface exposure of six-histidine tag on the synthetic bacteria and carboxyl groups on the modified MNPs (MNP@SiO₂-PEI-DTPA), the synthetic bacterial cells and MNPs coassembled to form biotic/abiotic complex exhibiting a self-developing characteristic. In the culture medium containing both Cd²⁺ and Pb²⁺, the coassemblies captured these heavy metals with high removal efficiency (>90% even at 50 mg/L of Cd²⁺ and 50 mg/L of Pb²⁺) and were conveniently recycled by artificial magnetic fields. Moreover, the coassemblies realized coremoval of organic carbon pollutants with the removal efficiency of >80%. This study builds a novel biotic/abiotic coassembling platform facilitated by genetic engineering and sheds light on development of artificial magnetic biological systems for efficient treatment of environmental pollution.