Biological approaches of fluoride remediation: potential for environmental clean-up

Distribution characteristics and risk assessment of fluoride in surface water of urban typical rivers

Recent research on fluoride in water primarily focuses on groundwater; however, the potential environmental risks of fluoride in urban rivers should not be overlooked. In 2023, this study collected 135 surface water samples from the Ershibu River in Hefei, China, during various flood periods. Through descriptive statistical analysis, correlation analysis, principal component analysis-multiple linear regression (PCA-MLR) modeling, hazard quotient (HQ) assessment, and Monte Carlo simulation analysis, the spatial and temporal distribution, potential sources, and health risks of fluoride were investigated. The results showed that fluoride concentrations in the Ershibu River ranged from 0 to 1.38 mg/L. According to the PCA-MLR calculations, industrial pollution (73.92 %) was identified as the main source, followed by hydrogeochemical evolution (16.10 %) and agricultural activities (9.98 %). The HQ analysis revealed that the average exceedance rates of HQ for the five exposed populations were as follows: infants (64.45 %) > young children (2.22 %) = adults (2.22 %) > children (0) = teenagers (0). Therefore, relevant authorities should improve defluoridation facilities to reduce fluoride levels in industrial and agricultural wastewater and implement measures to protect public health. Future research should investigate the migration processes and toxicity mechanisms of fluoride more thoroughly.

Insights of using microbial material in fluoride removal from wastewater: A review

Fluoride is an essential trace element for the human body, but excessive fluoride can cause serious environmental and health problems. Therefore, developing efficient fluoride removal technologies is crucial. This review summarizes the progress made in using microbial materials to remove fluoride from wastewater, covering strategies that involve pure cultures of bacteria, fungi, and algae, as well as modified microbial materials and bioreactors. Live microorganisms exhibit high efficiency in adsorbing low concentrations of fluoride, while modified microbial materials are more suitable for treating high concentrations of fluoride. The review discusses the adsorption mechanisms and influencing factors of these technologies, and evaluates their practical application potential through techno-economic analysis. Finally, future research directions are proposed, including the optimization of modification technologies and the selection of effective microbial species, providing theoretical guidance and a basis for future microbial defluoridation technologies.

Remediation of fluoride-contaminated wastes: Chelator-assisted washing and subsequent immobilization using CaO and H3PO4

Fluoride (F) contamination in industrial waste is a significant challenge for sustainable materials recycling. Existing techniques for mitigating F contamination focus on immobilization, converting F compounds to insoluble forms while leaving the total F content untreated. Chelator-assisted washing is considered a promising alternative remediation strategy that can indirectly release F by entrapping and dissolving F-bearing minerals. This study evaluates the effectiveness of chelator-assisted washing in removing F from three real F-contaminated waste samples (TCS-49, TCS-51, and TCS-52) by treating with four different chelators, ethylenediaminetetraacetic acid (EDTA), ethylenediamine N,N'-disuccinic acid (EDDS), diethylenetriaminepentaacetic acid (DTPA), and 3-hydroxy-2,2'-imino disuccinic acid (HIDS). The influence of key washing variables, including chelator type, solution pH, chelator concentration, washing time, and liquid-to-solid (L/S) ratio toward F extraction was assessed and optimized for attaining the maximum extraction. All chelators exhibited the highest F extraction from TCS-49 and TCS-51 at pH 11, whereas in TCS-52 it showed a discrete extraction pattern. Under optimized conditions (concentration, 10 mmol L-1; pH, 11; washing duration, 3 h; and L/S ratio, 10:1), EDTA outperformed the other chelators, enhancing F extraction by 2.1 and 1.2 times for TCS-49 and TCS-51, respectively, compared with those of control treatments. However, for TCS-52, the efficiency of EDTA was analogous to that of the control under the same washing conditions. The linear correlation between the extracted F and F-containing minerals suggests that the chelator-induced F removal from contaminated waste involves the entrapment and dissolution of F-bearing minerals, especially Ca and Fe. The subsequent post-washing immobilization of chelator-washed waste residues using CaO or H3PO4 significantly reduced the content of leachable F under the regulatory limit.

Prediction of the fluoride contents of different crop species via the random forest algorithm

Fluoride (F) is a trace element that is essential to the human body and occurs naturally in the environment. However, a deficiency or excess of F in the environment can potentially lead to human health issues. The pseudototal amount of F in soil often does not correlate directly with the F content in plants. Instead, the F content within plants tends to have a greater correlation with the bioavailable F in soils. In large-scale soil surveys, only the pseudototal elemental content of soils is typically measured, which may not be highly reliable for developing agricultural zoning plans. There are significant variations in the ability of different plants to accumulate F from soil. Additionally, due to variations in soil elemental absorption mechanisms among different plant species, when multiple crops are grown in an area, it is typically necessary to study the elemental absorption mechanisms of each crop. To address these issues, in this study, we examined the factors influencing F bioaccumulation coefficients in different crops based on 1:50,000 soil geochemical survey data. Using the random forest algorithm, four indicators-bioavailable P, bioavailable Zn, leachable Pb, and Sr-were selected from among 29 parameters to predict the F content within crops to replace bioavailable F in the soil. Compared with the multivariate linear regression (MLR) model, the random forest (RF) model provided more accurate and reliable predictions of the fluoride content in crops, with the RF model's prediction accuracy improving by approximately 95.23%. Additionally, while the partial least squares regression (PLSR) model also offered improved accuracy over MLR, the RF model still outperformed PLSR in terms of prediction accuracy and robustness. Additionally, it maximized the utilization of existing geochemical survey data, enabling cross-species studies for the first time and avoiding redundant evaluations of different types of agricultural products in the same region. In this investigation, we selected the Xining-Ledu region of Qinghai Province, China, as the study area and employed a random forest model to predict the crop F content in soils, providing a new methodological framework for crop production that effectively enhances agricultural quality and efficiency.

Tomato seed bio-priming with Pseudomonas aeruginosa strain PAR: a study on plant growth parameters under sodium fluoride stress

The primary goal of this experiment is to examine the effectiveness of Pseudomonas aeruginosa strain PAR as a rhizobacterium that promotes plant growth in mitigating the negative effects of fluoride-induced stress in tomato (Lycopersicon esculentum Mill.) plants. A total of 16 rhizobacterial strains were tested for plant growth-promoting (PGP) attributes, with isolates S1, S2, and S3 exhibiting different characteristics. Furthermore, growth kinetics studies revealed that these isolates were resilient to fluoride stress (10, 20, 40, and 80 ppm), with isolate S2 exhibiting notable resilience compared to the other two strains. Phylogenetic analysis revealed isolate S2 as P. aeruginosa strain PAR. Physiological analyses demonstrated that P. aeruginosa strain PAR had a beneficial impact on plant properties under fluoride stress, comprising seed germination, root length, shoot height, relative water content, and leaf area, the strain also impacted the buildup of glycine betaine, soluble sugar, and proline, demonstrating its significance in enhancing plant stress tolerance. In P. aeruginosa strain PAR-treated plants, chlorophyll content increased while malondialdehyde (MDA) levels decreased, indicating enhanced photosynthetic efficiency and less oxidative stress. The strain modified antioxidant enzyme action (catalase, ascorbate, glutathione reductase, peroxidase, and superoxide dismutase), which contributed to improved stress resilience. Mineral analysis revealed a decrease in sodium and fluoride concentrations while increasing magnesium, potassium, phosphorus, and iron levels, emphasizing the strain's significance in nutrient management. Correlation and principal component analysis revealed extensive correlations between physiological and biochemical parameters, underscoring P. aeruginosa strain PAR's multifaceted impact on plant growth and stress response. This study offers valuable information on effectively utilizing PGPR, particularly P. aeruginosa strain PAR, in fluoride-contaminated soils for sustainable agriculture. It presents a promising biological strategy to enhance crop resilience and productivity.

A review on recent environmental electrochemistry approaches for the consolidation of a circular economy model

Availability of raw materials in the chemical industry is related to the selection of the chemical processes in which they are used as well as to the efficiency, cost, and eventual evolution to more competitive dynamics of transformation technologies. In general terms however, any chemically transforming technology starts with the extraction, purification, design, manufacture, use, and disposal of materials. It is important to create a new paradigm towards green chemistry, sustainability, and circular economy in the chemical sciences that help to better employ, reuse, and recycle the materials used in every aspect of modern life. Electrochemistry is a growing field of knowledge that can help with these issues to reduce solid waste and the impact of chemical processes on the environment. Several electrochemical studies in the last decades have benefited the recovery of important chemical compounds and elements through electrodeposition, electrowinning, electrocoagulation, electrodialysis, and other processes. The use of living organisms and microorganisms using an electrochemical perspective (known as bioelectrochemistry), is also calling attention to "mining", through plants and microorganisms, essential chemical elements. New process design or the optimization of the current technologies is a major necessity to enhance production and minimize the use of raw materials along with less generation of wastes and secondary by-products. In this context, this contribution aims to show an up-to-date scenario of both environmental electrochemical and bioelectrochemical processes for the extraction, use, recovery and recycling of materials in a circular economy model.

Current progress on fluoride occurrence in the soil environment: Sources, transformation, regulations and remediation

Fluorine is a halogen element widely distributed in nature, but due to excessive emissions from industrial manufacturing and agricultural production, etc., the soil is over-enriched with fluoride and the normal growth of plants is under stress, and it also poses a great threat to human health. In this review, we summarized the sources of fluoride in soil, and then analyzed the potential mechanisms of fluoride uptake in soil-plant systems. In addition, the main influences of soil ecosystems on plant fluoride uptake were discussed, soil management options to mitigate fluoride accumulation in plants were also summarized. The bioremediation techniques were found to be a developmental direction to improve fluoride pollution. Finally, we proposed other research directions, including fluoride uptake mechanisms in soil-plant systems at the molecular expression levels, development of visualization techniques for fluoride transport in plants, interactions mechanisms between soil microhabitats and plant metabolism affecting fluoride uptake, as well as combining abiotic additives, nanotechnology and biotechnology to remediate fluoride contamination problems.

The role of plant growth promoting rhizobacteria in strengthening plant resistance to fluoride toxicity: a review

A wide variety of bacteria are present in soil but in rhizospheric area, the majority of microbes helps plant in defending diseases and facilitate nutrient uptake. These microorganisms are supported by plants and they are known as plant growth-promoting rhizobacteria (PGPR). The PGPRs have the potential to replace chemical fertilizers in a way that is more advantageous for the environment. Fluoride (F) is one of the highly escalating, naturally present contaminants that can be hazardous for PGPRs because of its antibacterial capacity. The interactions of F with different bacterial species in groundwater systems are still not well understood. However, the interaction of PGPR with plants in the rhizosphere region reduces the detrimental effects of pollutants and increases plants' ability to endure abiotic stress. Many studies reveal that PGPRs have developed F defense mechanisms, which include efflux pumps, Intracellular sequestration, enzyme modifications, enhanced DNA repair mechanism, detoxification enzymes, ion transporter/antiporters, F riboswitches, and genetic mutations. These resistance characteristics are frequently discovered by isolating PGPRs from high F-contaminated areas or by exposing cells to fluoride in laboratory conditions. Numerous studies have identified F-resistant microorganisms that possess additional F transporters and duplicates of the well-known targets of F. Plants are prone to F accumulation despite the soil's low F content, which may negatively affect their growth and development. PGPRs can be used as efficient F bioremediators for the soil environment. Environmental biotechnology focuses on creating genetically modified rhizobacteria that can degrade F contaminants over time. The present review focuses on a thorough systemic analysis of contemporary biotechnological techniques, such as gene editing and manipulation methods, for improving plant-microbe interactions for F remediation and suggests the importance of PGPRs in improving soil health and reducing the detrimental effects of F toxicity. The most recent developments in the realm of microbial assistance in the treatment of F-contaminated environments are also highlighted.

Microbially induced calcium precipitation coupled with medical stone-coated sponges: A targeted strategy for enhanced nitrate and fluoride removal from groundwater

The coexistence of nitrate and fluoride in groundwater is of high concern due to its potential environmental impacts and health risks. Medical stone-coated sponges, as a microbial activity promoter and slow-release calcium source, were introduced into an immobilized bioreactor for enhanced removal of nitrate and fluoride. Under the hydraulic retention time of 3 h, nitrate, fluoride, and calcium contents of 16.5, 3.0, and 100 mg L^-1, the average removal efficiencies of nitrate, fluoride, and calcium reached 99.49%, 74.26%, and 70.43%, respectively. Co-precipitation and chemisorption were the mechanisms for fluoride and calcium removal. Medical stone load improved the competitiveness of dominant bacteria and electron transport activity, accelerated the denitrification process, and stimulated biofilm formation. High fluoride level (5.0 mg L^-1) inhibited the nitrate removal and aromatic protein production. The fluoride content changes altered the carbon source preference of the microbial community, which preferred to use amino acids and carbohydrates under a higher fluoride content. The introduction of medical stones significantly accelerated the fluoride and nitrate removal, providing a new insight for the application of microbially induced calcium precipitation technique in the remediation of low-calcium groundwater.

Soil exposure is the major fluoride exposure pathways for residents from the high-fluoride karst region in Southwest China

In the karst areas of southwest China, soil fluoride levels are higher than in China (478 mg kg^-1) and world (200 mg kg^-1). High levels of F in the environment might pose a health risk to humans. The comprehensive exposure risk must be studied in this area. Herein, samples of crops and soil were collected from Bijie City, a typical karst area in southwest China, to investigate the pollution level and evaluate the comprehensive F exposure risk. The single-factor index (P_Fw) and the geological accumulation index (I_geo) were used. The hazard index (HI) was applied to assess exposure risk from multiple exposure routes. The results revealed that there is considerable F contamination in soil and crops in the study area. Average soil total fluorine (Ft) was 1139.13 mg kg^-1, and soil water soluble F (Fw) was 3.792 mg kg^-1. In corn, rice, wheat, and potatoes, F contents were 1.167-9.585, 1.222-6.698, 1.587-9.976, and 1.797-9.143 mg kg^-1, respectively. The mean values of HI were 4.45 and 2.42 for children and adults, respectively, > 1, showing potential health risk exists. Youngsters are at a greater exposure risk than adults. From the results of contribution ratios of different exposure routes for health risk, the major exposure risk was determined to be from soil exposure. Based on this, we suggest that risk managers mainly strive to control the soil fluoride level and implement the risk education and communication.

State-of-the-art of research progress on adsorptive removal of fluoride-contaminated water using biochar-based materials: Practical feasibility through reusability and column transport studies

Fluoride (F^-) is one of the essential elements found in soil and water released from geogenic sources and several anthropogenic activities. Fluoride causes fluorosis, dental and skeletal growth problems, teeth mottling, and neurological damage due to prolonged consumption, affecting millions worldwide. Adsorption is an extensively implemented technique in water and wastewater treatment for fluoride, with significant potential due to efficiency, cost-effectiveness, ease of operation, and reusability. This review highlights the current state of knowledge for fluoride adsorption using biochar-based materials and the limitations of biochar for fluoride-contaminated groundwater and industrial wastewater treatment. Biochar materials have shown significant adsorption capacities for fluoride under the influence of low pH, biochar dose, initial concentration, temperature, and co-existing ions. Modified biochar possesses various functional groups (-OH, -CC, -C-O, -CONH, -C-OH, X-OH), in which enhanced hydroxyl (-OH) groups onto the surface plays a significant role in fluoride adsorption via electrostatic attraction and ion exchange. Regeneration and reusability of biochar sorbents need to be performed to a greater extent to improve removal efficiency and reusability in field conditions. Furthermore, the present investigation identifies the limitations of biochar materials in treating fluoride-contaminated drinking groundwater and industrial effluents. The fluoride removal using biochar-based materials at an industrial scale for understanding the practical feasibility is yet to be documented. This review work recommend the feasibility of biochar-based materials in column studies for fluoride remediation in the future.

Enhanced nitrate, fluoride, and phenol removal using polyurethane sponges loaded with rice husk biochar in immobilized bioreactor

Polyurethane sponges loaded with rice husk biochar were prepared to immobilize Aquabacterium sp. CZ3 for intensified removal of nitrate, fluoride (F-), and phenol, with the maximum efficiency of 100 %, 91 %, and 99 %, respectively. The biochar load and increased carbon-to-nitrogen (C:N) ratio (below 3.0) stimulated the secretion of soluble microbial product, improved the electron transport system activity, and promoted denitrification, phenol co-metabolism, and F- and calcium crystallization. The characterization results suggested that F- was removed as fluoride-containing calcium precipitates. According to the microbial community analyses, Aquabacterium was the dominant bacterium. PICRUSt analyses showed that biochar and adequate carbon sources (C:N ratio 3.0) significantly increased the functional abundances of amino acid metabolism, carbohydrate metabolism, energy metabolism, and cell motility. The introduction of biochar reduces the demand for C:N ratio in the system, and expands the application potential of biomineralization technique in the remediation of multiple pollutants contaminated water.

Enhanced removal of fluoride, nitrate, and calcium using self-assembled fungus-flexible fiber composite microspheres combined with microbially induced calcium precipitation

Self-assembled fungus-flexible fiber composite microspheres (SFFMs) were firstly combined with microbially induced calcium precipitation (MICP) in a continuous-flow bioreactor and achieved the efficient removal of fluoride (F^-), nitrate (NO₃^-), and calcium (Ca²⁺). Under the influent F^- of 3.0 mg L^-1, pH of 7.0, and HRT of 8 h, the average removal efficiencies reached 77.54%, 99.39%, and 67.25% (0.29, 2.03, and 8.34 mg L^-1 h^-1), respectively. Fluorescence spectrum and flow cytometry analyses indicated that F^- content significantly affected the metabolism and viability of bacteria. SEM images showed that flexible fibers and intertwined hyphae provided effective locations for bacterial colonization in SFFMs. The precipitated products were characterized by XRD and FTIR, which revealed that F^- was mainly removed in the form of calcium fluoride and calcium fluorophosphate (CaF₂ and Ca₅(PO₄)₃F). High-throughput analysis at different levels demonstrated that Pseudomonas sp. WZ39 acted as the core strain, which played a crucial role in the bioreactor. The mechanism of enhanced denitrification was attributed to minor F^- stress and bioaugmentation technology. This study highlighted the superiorities of SFFMs and MICP combined remediation and documented a promising option for F^-, NO₃^-, and Ca²⁺ removal.

Synergistic removal of fluoride, calcium, and nitrate in a biofilm reactor based on anaerobic microbially induced calcium precipitation

Fluoride (F^-) and calcium (Ca²⁺) are primary causes of skeleton fluorosis and scaling, posing a grievous threat to aquatic lives and public health. Therefore, a novel strategy for polluted groundwater in immobilized biofilm reactor based on the anaerobic microbial induced calcium precipitation (MICP) was proposed, in which loofah was used as a multifunctional strain Cupriavidus sp. W12 growth carrier. Effects of different hydraulic retention time (HRT), initial F^-concentration, and pH on the synchronous removal of pollutants were examined. Under stable operation conditions, the highest efficiencies for Ca²⁺, F^-, and nitrate (NO₃^--N) reached 76.73%, 94.92%, and 100%, respectively. Furthermore, gas chromatography (GC), Fluorescence excitation-emission matrix (EEM), X-ray diffraction (XRD), Scanning electron microscope-energy dispersive spectroscope (SEM-EDS), and Fourier transform infrared spectrometer (FTIR) comprehensively clarified the mechanism of pollutants removal. The results elucidated that the removal of various pollutants was achieved through a combination of anaerobic MICP, adsorption, and co-precipitation. Besides, high-throughput sequencing analysis showed that Cupriavidus had a predominant proportion of 42.36% in the reactor and had stability against pH impact. As the first application of a biofilm reactor based on anaerobic MICP, it put forward a new insight for efficient defluorination and decalcification.

Synergistic removal of fluoride from groundwater by seed crystals and bacteria based on microbially induced calcium precipitation

A new hypothesis that seed crystals (SC) and bacteria based on microbially induced calcium precipitation (MICP) synergistically remove fluoride (F^-) from groundwater was proposed, with a focus on evaluating the defluoridation potential of this method and revealing its F^- removal mechanism. The crucial conditions were optimized to reduce preparation and operation costs. SC furnished more available binding sites due to the existence of bacteria, and the reuse experiments showed that the defluoridation efficiency of SC still remained a high level after 14 cycles (70.10%), with a residual F^- concentration of 0.96 mg L^-1. The SEM-EDS, FTIR and XRD analyses indicated the predominant F^- removal mechanism of SC could be ascribed to the chemisorption, ion exchange, and co-precipitation. Moreover, ion exchange and co-precipitation (PO₄^3- involvement) were validated more contributive than chemisorption (CaCO₃ and CaSO₄ involvement). As a feasible, reusable, and eco-friendly technique, SC suggests promising applications in the treatment of fluoride-contaminated groundwater.

Defluoridation using hydroxyapatite implanted lanthanum organic framework-based bio-hybrid beads

The present study reports on biopolymer based material namely HAp–La-BTC MOFs@Alg–CS hybrid beads were developed and it was potentially employed for fluoride removal.

Effects of heavy metals on bacterial community structures in two lead-zinc tailings situated in northwestern China

We evaluated the variations of bacterial communities in six heavy metal contaminated soils sampled from Yanzi Bian (YZB) and Shanping Cun (SPC) tailings located in northwestern China. Statistical analysis showed that both the heavy metals and soil chemical properties could affect the structure and diversity of the bacterial communities in the tailing soils. Cd, Cu, Zn, Cr, Pb, pH, SOM (soil organic matters), TP (total phosphorus) and TN (total nitrogen) were the main driving factors of the bacterial community variations. As a consequence, the relative abundances of certain bacterial phyla including Proteobacteria, Chloroflexi, Firmicutes, Nitrospirota and Bacteroidota were significantly increased in the tailing soils. Further, we found that the abundance increasement of these phyla were mainly contributed by certain species, such as s__unclassified_g__Thiobacillus (Proteobacteria), s__unclassified_g__Sulfobacillus (Firmicutes) and Leptospirillum ferriphilum (Nitrospirota). Thus, these species were considered to be strongly heavy metal tolerant. Together, our findings will provide a useful insight for further bioremediations of these contaminated areas.

Bioaccumulation of Fluoride in Plants and Its Microbially Assisted Remediation: A Review of Biological Processes and Technological Performance

Fluoride is widely found in soil–water systems due to anthropogenic and geogenic activities that affect millions worldwide. Fluoride ingestion results in chronic and acute toxicity, including skeletal and dental fluorosis, neurological damage, and bone softening in humans. Therefore, this review paper summarizes biological processes for fluoride remediation, i.e., bioaccumulation in plants and microbially assisted systems. Bioremediation approaches for fluoride removal have recently gained prominence in removing fluoride ions. Plants are vulnerable to fluoride accumulation in soil, and their growth and development can be negatively affected, even with low fluoride content in the soil. The microbial bioremediation processes involve bioaccumulation, biotransformation, and biosorption. Bacterial, fungal, and algal biomass are ecologically efficient bioremediators. Most bioremediation techniques are laboratory-scale based on contaminated solutions; however, treatment of fluoride-contaminated wastewater at an industrial scale is yet to be investigated. Therefore, this review recommends the practical applicability and sustainability of microbial bioremediation of fluoride in different environments.

Microbially induced calcium precipitation based simultaneous removal of fluoride, nitrate, and calcium by Pseudomonas sp. WZ39: Mechanisms and nucleation pathways

A simultaneous denitrifying and mineralizing bacterium, Pseudomonas sp. WZ39 was isolated for fluoride (F^-), nitrate (NO₃^--N), and calcium (Ca²⁺) removal. Strain WZ39 exhibited a remarkable defluoridation efficiency of 87.49% under a pH of 6.90, F^- and Ca²⁺ concentration of 1.99 and 201.88 mg L^-1, respectively. EEM, SEM-EDS, XRD, and FTIR analyses elucidated the chemical adsorption and co-precipitation with calcium salt contributed to the removal of F^-. The mechanisms of biomineralization were also investigated by determining the role of bound and unbound extracellular polymeric substances (EPS), cell wall, and calcium channel in nucleation. The results showed that bacteria can promote nucleation on the templates of cell walls or EPS through the electrostatic effect. The presence of the calcium channel blocker inhibited the transport of intracellular Ca²⁺ to the extracellular environment. The outcome of the present research can provide a theoretical basis for the understanding of MICP phenomenon and the efficient treatment of F^- containing groundwater.

Study on the simultaneous removal of fluoride, heavy metals and nitrate by calcium precipitating strain Acinetobacter sp. H12

The removal properties and mechanisms of fluoride (F^-) and nickel (Ni²⁺) were studied by biomineralizing bacteria (Acinetobacter sp. H12). The results showed that the removal ratio of F^-, Ca²⁺ and Ni²⁺ reached 75% (0.031 mg·L^-1·h^-1), 84.96% (2.123 mg·L^-1·h^-1), and 56.67% (0.024 mg·L^-1·h^-1) after 72 h, respectively. The removal ratio of nitrate (NO₃^-) reached 100% (0.686 mg·L^-1·h^-1) after 24 h. SEM and XRD images indicated that bioprecipitation of CaF₂, Ca₅(PO₄)₃F, Ca₅(PO₄)₃(OH), NiCO₃, CaCO₃ and Ni were formed, and some of these precipitation used bacteria as nucleation sites to form biological crystal seeds. N₂ was the primary product in gas chromatography analysis. Meanwhile, both the fluorescence spectroscopy and fourier transform near-infrared spectroscopy analysis proved that strain H12 had good ability to remove fluoride and nickel ions simultaneously.