1
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Huo X, Zhou Z, Liu H, Wang G, Shi K. A PadR family transcriptional repressor regulates the transcription of chromate efflux transporter in Enterobacter sp. Z1. J Microbiol 2024; 62:355-365. [PMID: 38587592 DOI: 10.1007/s12275-024-00117-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Revised: 01/10/2024] [Accepted: 01/23/2024] [Indexed: 04/09/2024]
Abstract
Chromium is a prevalent toxic heavy metal, and chromate [Cr(VI)] exhibits high mutagenicity and carcinogenicity. The presence of the Cr(VI) efflux protein ChrA has been identified in strains exhibiting resistance to Cr(VI). Nevertheless, certain strains of bacteria that are resistant to Cr(VI) lack the presence of ChrB, a known regulatory factor. Here, a PadR family transcriptional repressor, ChrN, has been identified as a regulator in the response of Enterobacter sp. Z1(CCTCC NO: M 2019147) to Cr(VI). The chrN gene is cotranscribed with the chrA gene, and the transcriptional expression of this operon is induced by Cr(VI). The binding capacity of the ChrN protein to Cr(VI) was demonstrated by both the tryptophan fluorescence assay and Ni-NTA purification assay. The interaction between ChrN and the chrAN operon promoter was validated by reporter gene assay and electrophoretic mobility shift assay. Mutation of the conserved histidine residues His14 and His50 resulted in loss of ChrN binding with the promoter of the chrAN operon. This observation implies that these residues are crucial for establishing a DNA-binding site. These findings demonstrate that ChrN functions as a transcriptional repressor, modulating the cellular response of strain Z1 to Cr(VI) exposure.
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Affiliation(s)
- Xueqi Huo
- National Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China
| | - Zijie Zhou
- National Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China
| | - Hongliang Liu
- School of Life Sciences and Medicine, Shandong University of Technology, Zibo, 255000, Shandong Province, People's Republic of China
| | - Gejiao Wang
- National Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China
| | - Kaixiang Shi
- National Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China.
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2
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Jeong J, Selvamani V, Maruthamuthu MK, Arulsamy K, Hong SH. Application of the surface engineered recombinant Escherichia coli to the industrial battery waste solution for lithium recovery. J Ind Microbiol Biotechnol 2024; 51:kuae012. [PMID: 38573823 PMCID: PMC11037431 DOI: 10.1093/jimb/kuae012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Accepted: 04/03/2024] [Indexed: 04/06/2024]
Abstract
Escherichia coli were engineered to selectively adsorb and recover lithium from the environment by employing a bacterial cell surface display strategy. Lithium binding peptide (LBP1) was integrated into the Escherichia coli membrane protein OmpC. The effect of environmental conditions on the adsorption of lithium by a recombinant strain was evaluated, and lithium particles on the cellular surface were analyzed by FE-SEM and XRD. To elevate the lithium adsorption, dimeric, trimeric, and tetrameric repeats of the LBP1 peptide were constructed and displayed on the surface of E. coli. The constructed recombinant E. coli displaying the LBP1 trimer was applied to real industrial lithium battery wastewater to recover lithium.
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Affiliation(s)
- Jaehoon Jeong
- Department of Chemical Engineering, University of Ulsan, Namgu, Ulsan 44610, Republic of Korea
| | - Vidhya Selvamani
- Department of Chemical Engineering, University of Ulsan, Namgu, Ulsan 44610, Republic of Korea
| | | | - Kulandaisamy Arulsamy
- Department of Biotechnology, Indian Institute of Technology Madras, Chennai 600036, India
| | - Soon Ho Hong
- Department of Chemical Engineering, University of Ulsan, Namgu, Ulsan 44610, Republic of Korea
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3
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Liu M, Qi XE, Han J, Ni H, Zhao S. Reducing cadmium accumulation in shrimp using Escherichia coli with surface-displayed peptide. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 256:114858. [PMID: 37004431 DOI: 10.1016/j.ecoenv.2023.114858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Revised: 03/19/2023] [Accepted: 03/29/2023] [Indexed: 06/19/2023]
Abstract
Cadmium (Cd) is a hazardous metal that can accumulate in aquatic organisms and endanger human health via the food chain. In this study, genetic engineering was used to display a peptide with Cd-binding potential on the surface of Escherichia coli cells. This whole-cell adsorbent exhibited high affinity for Cd ions (Cd2+) in the solution. The Cd2+ adsorption capacity of the whole-cell adsorbent was three-fold that of the control cells in a 20 μM Cd2+ solution, and 97.2% ± 2.38% of the Cd2+ was removed. The whole-cell adsorbent was fed to shrimp (Neocaridina denticulata), and the surface-engineered E. coli successfully colonized the shrimp intestine, which showed significantly less Cd accumulation than the group not fed surface-engineered E. coli. The whole-cell adsorbent evidently protected shrimp from the toxicity of Cd2+ by adsorbing it. Moreover, the whole-cell adsorbent mitigated the changes in microbial community structure in the shrimp gut caused by the exposure of Cd2+. These findings suggest that this strategy is effective for controlling the contamination of Cd2+ in shrimp.
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Affiliation(s)
- Minrui Liu
- College of Life Science and Technology, Gansu Agricultural University, Lanzhou, 730070 Gansu, China.
| | - Xing-E Qi
- College of Life Science and Technology, Gansu Agricultural University, Lanzhou, 730070 Gansu, China
| | - Jiangyuan Han
- College of Life Science and Technology, Gansu Agricultural University, Lanzhou, 730070 Gansu, China
| | - Hongyuhang Ni
- Department of Infectious Diseases and Public Health, Jockey Club College of Veterinary Medicine and Life Sciences, City University of Hong Kong, Kowloon, Hong Kong
| | - Shuqin Zhao
- Laboratory and Base Administration Center, Gansu Agricultural University, Lanzhou, 730070 Gansu, China
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4
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Saravanan A, Kumar PS, Ramesh B, Srinivasan S. Removal of toxic heavy metals using genetically engineered microbes: Molecular tools, risk assessment and management strategies. CHEMOSPHERE 2022; 298:134341. [PMID: 35307383 DOI: 10.1016/j.chemosphere.2022.134341] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Revised: 03/03/2022] [Accepted: 03/14/2022] [Indexed: 06/14/2023]
Abstract
The direct release of industrial effluent into the water and other anthropogenic activities causes water pollution. Heavy metal ions are the primary contaminant in the industrial effluents which are exceptionally toxic at low concentrations, terribly disturb the endurance equilibrium of activities in the eco-system and be remarkably hazardous to human health. Different conventional treatment methodologies were utilized for the removal of toxic pollutants from the contaminated water which has several drawbacks such as cost-ineffective and lower efficiency. Recently, genetically modified micro-organisms (GMMs) stand-out for the removal of toxic heavy metals are viewed as an economically plausible and environmentally safe technique. GMMs are microorganisms whose genetic material has been changed utilizing genetic engineering techniques that exhibit enhanced removal efficiency in comparison with the other treatment methodologies. The present review comments the GMMs such as bacteria, algae and fungi and their potential for the removal of toxic heavy metals. This review provides current aspects of different advanced molecular tools which have been used to manipulate micro-organisms through genetic expression for the breakdown of metal compounds in polluted areas. The strategies, major limitations and challenges for genetic engineering of micro-organisms have been reviewed. The current review investigates the approaches working on utilizing genetically modified micro-organisms and effective removal techniques.
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Affiliation(s)
- A Saravanan
- Department of Sustainable Engineering, Saveetha School of Engineering, SIMATS, Chennai, 602105, India
| | - P Senthil Kumar
- Department of Chemical Engineering, Sri Sivasubramaniya Nadar College of Engineering, Chennai, 603110, India; Centre of Excellence in Water Research (CEWAR), Sri Sivasubramaniya Nadar College of Engineering, Chennai, 603110, India.
| | - B Ramesh
- Department of Sustainable Engineering, Saveetha School of Engineering, SIMATS, Chennai, 602105, India
| | - S Srinivasan
- Department of Sustainable Engineering, Saveetha School of Engineering, SIMATS, Chennai, 602105, India
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5
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Genetically Engineered Organisms: Possibilities and Challenges of Heavy Metal Removal and Nanoparticle Synthesis. CLEAN TECHNOLOGIES 2022. [DOI: 10.3390/cleantechnol4020030] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Heavy metal removal using genetically engineered organisms (GEOs) offer more cost and energy-efficient, safer, greener, and environmentally-friendly opportunities as opposed to conventional strategies requiring hazardous or toxic chemicals, complex processes, and high pressure/temperature. Additionally, GEOs exhibited superior potentials for biosynthesis of nanoparticles with significant capabilities in bioreduction of heavy metal ions that get accumulated as nanocrystals of various shapes/dimensions. In this context, GEO-aided nanoparticle assembly and the related reaction conditions should be optimized. Such strategies encompassing biosynthesized nanoparticle conforming to the green chemistry precepts help minimize the deployment of toxic precursors and capitalize on the safety and sustainability of the ensuing nanoparticle. Different GEOs with improved uptake and appropriation of heavy metal ions potentials have been examined for bioreduction and biorecovery appliances, but effective implementation to industrial-scale practices is nearly absent. In this perspective, the recent developments in heavy metal removal and nanoparticle biosynthesis using GEOs are deliberated, focusing on important challenges and future directions.
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Schönberger N, Taylor C, Schrader M, Drobot B, Matys S, Lederer FL, Pollmann K. Gallium-binding peptides as a tool for the sustainable treatment of industrial waste streams. JOURNAL OF HAZARDOUS MATERIALS 2021; 414:125366. [PMID: 33636447 DOI: 10.1016/j.jhazmat.2021.125366] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 01/31/2021] [Accepted: 02/05/2021] [Indexed: 06/12/2023]
Abstract
Here we provide a proof of principle for an application-oriented concept for the peptide-based recovery of gallium in industrial wastewater, which was supported by biosorption studies with a real wastewater sample. We investigated the interaction of the gallium-binding peptides TMHHAAIAHPPH, NYLPHQSSSPSR, SQALSTSRQDLR, HTQHIQSDDHLA, and NDLQRHRLTAGP with gallium and arsenic through different experimental and computational approaches. Data obtained from isothermal titration microcalorimetry indicated a competitive influence by the presence of acetate ions with an exothermic contribution to the otherwise endothermic peptide gallium interactions. For peptide HTQHIQSDDHLA, a stabilizing influence of acetate ions on the metal peptide interaction was found. Peptide NYLPHQSSSPSR showed the highest affinity for gallium in ITC studies. Computational modeling of peptide NYLPHQSSSPSR was used to determine interaction parameters and to explain a possible binding mechanism. Furthermore, the peptides were immobilized on polystyrene beads. Thus, we created a novel and exceptionally robust peptide-based material for the biosorption of gallium from an aqueous solution. Data obtained from isothermal titration microcalorimetry indicated a competitive influence by the presence of acetate ions with an exothermic contribution to the otherwise endothermic peptide gallium interactions. For peptide HTQHIQSDDHLA, a stabilizing influence of acetate ions on the metal peptide interaction was found. Peptide NYLPHQSSSPSR showed the highest affinity for gallium in ITC studies. Computational modeling of peptide NYLPHQSSSPSR was used to determine interaction parameters and to explain a possible binding mechanism. Furthermore, the peptides were immobilized on polystyrene beads. Thus, we created a novel and exceptionally robust peptide-based material for the biosorption of gallium from an aqueous solution.
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Affiliation(s)
- Nora Schönberger
- Institute of Nonferrous Metallurgy and Purest Materials, TU Bergakademie Freiberg, Leipziger Str. 32, 09599 Freiberg, Germany; Helmholtz Institute Freiberg for Resource Technology, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstraße 400, 01328 Dresden, Germany.
| | - Corey Taylor
- Institute of Resource Ecology, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstraße 400, 01328 Dresden, Germany
| | - Martin Schrader
- Helmholtz Institute Freiberg for Resource Technology, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstraße 400, 01328 Dresden, Germany
| | - Björn Drobot
- Institute of Resource Ecology, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstraße 400, 01328 Dresden, Germany
| | - Sabine Matys
- Helmholtz Institute Freiberg for Resource Technology, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstraße 400, 01328 Dresden, Germany
| | - Franziska L Lederer
- Helmholtz Institute Freiberg for Resource Technology, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstraße 400, 01328 Dresden, Germany
| | - Katrin Pollmann
- Helmholtz Institute Freiberg for Resource Technology, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstraße 400, 01328 Dresden, Germany
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7
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Wang Y, Selvamani V, Yoo IK, Kim TW, Hong SH. A Novel Strategy for the Microbial Removal of Heavy Metals: Cell-surface Display of Peptides. BIOTECHNOL BIOPROC E 2021. [DOI: 10.1007/s12257-020-0218-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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8
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Removal of Lead from Water Solution by Reusable Magnetic Adsorbent Incorporating Selective Lead-Binding Peptide. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10186418] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
As a reusable adsorbent to remove lead from water, a peptide-based magnetic adsorbent incorporating lead-binding peptide was constructed. First, a 7-mer lead-binding peptide (TNTLSNN) was covalently bonded onto the surface of a magnetic bead. Compared to the adsorption capacity of a bare magnetic bead (4.0 mg lead/g bead), the peptide-linked bead exhibited a capacity more than eight times higher than that of a bare bead (34.1 mg lead/g bead). The regenerated peptide bead, by desorbing the lead from the bead with EDTA, could be repeatedly used (tested over six cycles) for the following round of lead adsorption without any significant loss of adsorption capacity. The selective removal of lead in the presence of other interfering metals was demonstrated with the individual or the combinatory use of four metal ions, namely Pb(II), Ni(II), Co(II), and Cu(II), where the amount of adsorbed Pb(II) was remarkably higher than those of the other metal ions. The adsorption isotherm followed the Langmuir model well, with the maximum adsorption loading (qmax) of 70.4 mg lead/g bead.
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9
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Sauser L, Shoshan MS. Harnessing Peptides against lead pollution and poisoning: Achievements and prospects. J Inorg Biochem 2020; 212:111251. [PMID: 32920433 DOI: 10.1016/j.jinorgbio.2020.111251] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 08/16/2020] [Accepted: 08/30/2020] [Indexed: 11/24/2022]
Abstract
Among the broad applicability of peptides in numerous aspects of life and technologies, their interactions with lead (Pb), one of the most harmful substances to the environment and health, are constantly explored. So far, peptides were developed for environmental remediation of Pb-contaminations by various strategies such as hydrogelation and surface display. They were also designed for Pb detection and sensing by electrochemical and fluorescent methods and for modeling natural proteins that involve in mechanisms by which Pb is toxic. This review aims at summarizing selected examples of these applications, manifesting the enormous potential of peptides in the combat against Pb pollution. Nevertheless, the absence of new medicinal treatments against Pb poisoning that are based on peptides is noticeable. An overview of previous achievements utilizing Pb-peptide interactions towards various goals is presented and can be therefore leveraged to construct a useful toolbox for the design of smart peptides as next-generation therapeutics against Pb.
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Affiliation(s)
- Luca Sauser
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland
| | - Michal S Shoshan
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland.
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10
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Urbina J, Patil A, Fujishima K, Paulino-Lima IG, Saltikov C, Rothschild LJ. A new approach to biomining: Bioengineering surfaces for metal recovery from aqueous solutions. Sci Rep 2019; 9:16422. [PMID: 31712654 PMCID: PMC6848105 DOI: 10.1038/s41598-019-52778-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Accepted: 09/26/2019] [Indexed: 02/06/2023] Open
Abstract
Electronics waste production has been fueled by economic growth and the demand for faster, more efficient consumer electronics. The glass and metals in end-of-life electronics components can be reused or recycled; however, conventional extraction methods rely on energy-intensive processes that are inefficient when applied to recycling e-waste that contains mixed materials and small amounts of metals. To make e-waste recycling economically viable and competitive with obtaining raw materials, recovery methods that lower the cost of metal reclamation and minimize environmental impact need to be developed. Microbial surface adsorption can aid in metal recovery with lower costs and energy requirements than traditional metal-extraction approaches. We introduce a novel method for metal recovery by utilizing metal-binding peptides to functionalize fungal mycelia and enhance metal recovery from aqueous solutions such as those found in bioremediation or biomining processes. Using copper-binding as a proof-of-concept, we compared binding parameters between natural motifs and those derived in silico, and found comparable binding affinity and specificity for Cu. We then combined metal-binding peptides with chitin-binding domains to functionalize a mycelium-based filter to enhance metal recovery from a Cu-rich solution. This finding suggests that engineered peptides could be used to functionalize biological surfaces to recover metals of economic interest and allow for metal recovery from metal-rich effluent with a low environmental footprint, at ambient temperatures, and under circumneutral pH.
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Affiliation(s)
- Jesica Urbina
- University of California Santa Cruz, Department of Microbiology and Environmental Toxicology, Santa Cruz, CA, 95064, USA.
| | - Advait Patil
- Universities Space Research Association, Mountain View, CA, 94043, USA
| | - Kosuke Fujishima
- Tokyo Institute of Technology, Earth-Life Science Institute (ELSI), Tokyo, Japan
| | | | - Chad Saltikov
- University of California Santa Cruz, Department of Microbiology and Environmental Toxicology, Santa Cruz, CA, 95064, USA
| | - Lynn J Rothschild
- NASA Ames Research Center, Space Biosciences Division, Moffett Field, CA, 94035, USA
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11
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Keshav V, Franklyn P, Kondiah K. Recombinant Fusion Protein PbrD Cross-Linked to Calcium Alginate Nanoparticles for Pb Remediation. ACS OMEGA 2019; 4:16816-16825. [PMID: 31646227 PMCID: PMC6796987 DOI: 10.1021/acsomega.9b01624] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Accepted: 08/20/2019] [Indexed: 05/12/2023]
Abstract
Lead (Pb) pollution arising from industrial and mining activities has led to widespread environmental toxicity, particularly in South Africa. Humans exposed to Pb are reported to suffer from detrimental health impacts that can lead to fatalities. As such, there is an urgent need to remediate Pb from the environment. In this study, we propose the use of a Pb-specific recombinant fusion metalloprotein, rPbrD surface-cross-linked onto calcium alginate nanoparticles (CANPs) for the biosorption of Pb(II) from aqueous solution. The prepared biosorbents were characterized using scanning electron microscopy, transmission electron microscopy, and dynamic light scattering. Their ability to biosorb soluble Pb(II) was determined by inductively coupled plasma mass spectroscopy and their adsorption mechanism was described according to the Langmuir, Freundlich, Temkin, and Dubinin-Radushkevich adsorption isotherms. The rate of Pb uptake for bare CANPs and rPbrD-CANPs at a concentration of 100 mg/L metal was 3.34 and 8.82 mg/g, respectively, within 30 min. The adsorption data for the bare CANPs best fit the Langmuir isotherm, whereas the adsorption data for rPbrD-CANPs best fitted the Freundlich isotherm. Based on the sorption intensity (n) and the separation factor (R L), both biosorbents represent a favorable adsorption system. These findings suggest that the proposed nanobiosorbent is a promising candidate for the recovery of Pb ions present in high concentrations such as acid mine drainage or industrial effluent.
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Affiliation(s)
- Vidya Keshav
- School
of Molecular and Cell Biology and School of Chemistry, University of Witwatersrand, Private Bag 3, Wits, 2050 Johannesburg, South Africa
| | - Paul Franklyn
- School
of Molecular and Cell Biology and School of Chemistry, University of Witwatersrand, Private Bag 3, Wits, 2050 Johannesburg, South Africa
| | - Kulsum Kondiah
- School
of Molecular and Cell Biology and School of Chemistry, University of Witwatersrand, Private Bag 3, Wits, 2050 Johannesburg, South Africa
- Department
of Biotechnology and Food Technology, University
of Johannesburg, P.O. Box 17011,
Doornfontein, 2028 Johannesburg, South Africa
- E-mail: . Tel: +27 011 559 6102
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12
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Muñoz AJ, Espínola F, Ruiz E, Barbosa-Dekker AM, Dekker RFH, Castro E. Assessment of By-Product from Botryosphaeria rhodina MAMB-05 as an Effective Biosorbent of Pb(II). Molecules 2019; 24:molecules24183306. [PMID: 31514386 PMCID: PMC6767276 DOI: 10.3390/molecules24183306] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 09/05/2019] [Accepted: 09/08/2019] [Indexed: 11/25/2022] Open
Abstract
In this work, two types of biomass preparations (VMSM and M3) from the filamentous fungus Botryosphaeria rhodina MAMB-05, which were previously used in a process of production of β-glucan, were assessed as biosorbents of lead. The operating conditions, optimized through response surface methodology and experimental design, were shown to be pH 5.29 and a biosorbent dose of 0.23 g/L for the VMSM biomass type; and pH 5.06 and a dose of biosorbent of 0.60 g/L for the M3 biomass type, at a constant temperature of 27 °C. Fourier transform-infrared spectroscopy analyzed the presence of functional groups on the biomass surface. In addition to give an extra value to the by-product biomass, the VMSM-type from B. rhodina MAMB-05 showed an excellent lead biosorption capacity (qm) with a value of 403.4 mg/g for the Langmuir model, comparing favorably with literature results, while the M3 subtype biomass showed a value of 96.05 mg/g.
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Affiliation(s)
- Antonio J Muñoz
- Department of Chemical, Environmental and Materials Engineering, Universidad de Jaén, Campus Las Lagunillas, 23071 Jaén, Spain.
| | - Francisco Espínola
- Department of Chemical, Environmental and Materials Engineering, Universidad de Jaén, Campus Las Lagunillas, 23071 Jaén, Spain.
- Centre for Advanced Studies in Energy and Environment (CEAEMA), Universidad de Jaén, Campus Las Lagunillas, 23071 Jaén, Spain.
| | - Encarnación Ruiz
- Department of Chemical, Environmental and Materials Engineering, Universidad de Jaén, Campus Las Lagunillas, 23071 Jaén, Spain.
- Centre for Advanced Studies in Energy and Environment (CEAEMA), Universidad de Jaén, Campus Las Lagunillas, 23071 Jaén, Spain.
| | - Aneli M Barbosa-Dekker
- Departamento de Química, CCE - Universidade Estadual de Londrina, Londrina - Paraná CEP: 86051-990, Brazil.
| | - Robert F H Dekker
- Programa de Pós Graduação em Engenharia Ambiental, Universidade Tecnológica Federal do Paraná, Câmpus Londrina, Londrina - Paraná CEP: 86036-370, Brazil.
| | - Eulogio Castro
- Department of Chemical, Environmental and Materials Engineering, Universidad de Jaén, Campus Las Lagunillas, 23071 Jaén, Spain.
- Centre for Advanced Studies in Energy and Environment (CEAEMA), Universidad de Jaén, Campus Las Lagunillas, 23071 Jaén, Spain.
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13
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He B, Chen H, Li N, Huang J. SAROTUP: a suite of tools for finding potential target-unrelated peptides from phage display data. Int J Biol Sci 2019; 15:1452-1459. [PMID: 31337975 PMCID: PMC6643146 DOI: 10.7150/ijbs.31957] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2018] [Accepted: 04/09/2019] [Indexed: 01/13/2023] Open
Abstract
SAROTUP (Scanner And Reporter Of Target-Unrelated Peptides) 3.1 is a significant upgrade to the widely used SAROTUP web server for the rapid identification of target-unrelated peptides (TUPs) in phage display data. At present, SAROTUP has gathered a suite of tools for finding potential TUPs and other purposes. Besides the TUPScan, the motif-based tool, and three tools based on the BDB database, i.e., MimoScan, MimoSearch, and MimoBlast, three predictors based on support vector machine, i.e., PhD7Faster, SABinder and PSBinder, are integrated into SAROTUP. The current version of SAROTUP contains 27 TUP motifs and 823 TUP sequences. We also developed the standalone SAROTUP application with graphical user interface (GUI) and command line versions for processing deep sequencing phage display data and distributed it as an open source package, which can perform perfectly locally on almost all systems that support C++ with little or no modification. The web interfaces of SAROTUP have also been redesigned to be more self-evident and user-friendly. The latest version of SAROTUP is freely available at http://i.uestc.edu.cn/sarotup3.
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Affiliation(s)
- Bifang He
- School of Medicine, Guizhou University, Guiyang 550025, China.,Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 611731, China
| | - Heng Chen
- School of Medicine, Guizhou University, Guiyang 550025, China
| | - Ning Li
- Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 611731, China
| | - Jian Huang
- Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 611731, China
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14
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V K, I A, HW D, K K. Recombinant expression and purification of a functional bacterial metallo-chaperone PbrD-fusion construct as a potential biosorbent for Pb(II). Protein Expr Purif 2019; 158:27-35. [DOI: 10.1016/j.pep.2019.02.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2018] [Revised: 01/25/2019] [Accepted: 02/11/2019] [Indexed: 01/30/2023]
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15
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Liu M, Lu X, Khan A, Ling Z, Wang P, Tang Y, Liu P, Li X. Reducing methylmercury accumulation in fish using Escherichia coli with surface-displayed methylmercury-binding peptides. JOURNAL OF HAZARDOUS MATERIALS 2019; 367:35-42. [PMID: 30594015 DOI: 10.1016/j.jhazmat.2018.12.058] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2018] [Revised: 11/10/2018] [Accepted: 12/17/2018] [Indexed: 06/09/2023]
Abstract
Seafood consumption is widely considered as the primary route for human exposure to the neurotoxin methylmercury (MeHg) that is produced by certain anaerobic microorganisms and can bioaccumulate to high concentration levels in natural aquatic food webs. In this study, a novel methylmercury-binding peptide with seven amino acids was displayed on the cell surfaces of Escherichia coli strain W-1, which was isolated from fish feces and fused with ice nucleation protein. These cells exhibited high affinity and selectivity toward methylmercury. They efficiently removed more than 96% of 12 μM methylmercury, and accumulation of methylmercury in the engineered strain was four times higher than that in the wild type. Transmission electron microscopy confirmed methylmercury accumulation on cell membranes. Carassius auratus was fed by engineered bacteria, which showed a decrease in methylmercury concentration in muscles of about 36.3 ± 0.7%; whereas an increase in methylmercury concentration was observed in the feces (36.7 ± 0.8%) in comparison to the control group. The engineered strain in the gut captured methylmercury and prevented it's absorption by muscles, while some bacteria with methylmercury were excreted in the feces. The surface-engineered E. coli effectively protected fish from methylmercury contamination.
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Affiliation(s)
- Minrui Liu
- Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
| | - Xia Lu
- Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China; Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Aman Khan
- Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
| | - Zhenmin Ling
- Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
| | - Peng Wang
- Key laboratory of Nonferrous Metals Chemistry and Resources Utilization of Gansu province and State Key Laboratory of Applied Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, 730000, China
| | - Yu Tang
- Key laboratory of Nonferrous Metals Chemistry and Resources Utilization of Gansu province and State Key Laboratory of Applied Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, 730000, China
| | - Pu Liu
- Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
| | - Xiangkai Li
- Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China.
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Chen B, Fang L, Yan X, Zhang A, Chen P, Luan T, Hu L, Jiang G. A unique Pb-binding flagellin as an effective remediation tool for Pb contamination in aquatic environment. JOURNAL OF HAZARDOUS MATERIALS 2019; 363:34-40. [PMID: 30300776 DOI: 10.1016/j.jhazmat.2018.10.004] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2018] [Revised: 09/10/2018] [Accepted: 10/01/2018] [Indexed: 06/08/2023]
Abstract
Metal contaminants present persistent and deleterious threats to environmental ecosystems and human health. Microorganisms can rapidly develop protective mechanisms against metal toxicity, such as metallothionein production. The identification of biological factors related to these protective mechanisms is essential for effective metal remediation. This study presents a robust pathway to rapidly locate and characterize a Pb-binding flagellin in Serratia Se1998, which can bind Pb at a 16:1 Pb: protein ratio. A column gel electrophoresis system hyphenated with inductively coupled plasma mass spectrometry (ICP MS) was constructed to efficiently separate and identify Pb-binding proteins from the whole bacterial proteome. PCR and transgenic assays were used to elucidate the exact sequences and biological function of Pb-binding proteins and heterogeneous expression of Pb-binding flagellin in E. coli could significantly enhance Pb removal from aqueous solution by approximately 45%. This method provides a benchmark procedure to rapidly identify biological factors responsible for metal biosorption. Identification of this unique Pb-binding flagellin highlights that microorganisms can survive high metal stresses due to various complex biological pathways for metal detoxification and remediation.
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Affiliation(s)
- Baowei Chen
- Guangdong Provincial Key Laboratory of Marine Resources and Coastal Engineering, School of Marine Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Linchuan Fang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, 712100, PR China
| | - Xueting Yan
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, P. O. Box 2871, Beijing, 100085, PR China
| | - Aiqian Zhang
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, P. O. Box 2871, Beijing, 100085, PR China
| | - Ping Chen
- School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Tiangang Luan
- School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China; School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, PR China
| | - Ligang Hu
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, P. O. Box 2871, Beijing, 100085, PR China.
| | - Guibin Jiang
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, P. O. Box 2871, Beijing, 100085, PR China
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17
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Bio-recycling of metals: Recycling of technical products using biological applications. Biotechnol Adv 2018; 36:1048-1062. [PMID: 29555455 DOI: 10.1016/j.biotechadv.2018.03.006] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2017] [Revised: 03/05/2018] [Accepted: 03/11/2018] [Indexed: 11/21/2022]
Abstract
The increasing demand of different essential metals as a consequence of the development of new technologies, especially in the so called "low carbon technologies" require the development of innovative technologies that enable an economic and environmentally friendly metal recovery from primary and secondary resources. There is serious concern that the demand of some critical elements might exceed the present supply within a few years, thus necessitating the development of novel strategies and technologies to meet the requirements of industry and society. Besides an improvement of exploitation and processing of ores, the more urgent issue of recycling of strategic metals has to be enforced. However, current recycling rates are very low due to the increasing complexity of products and the low content of certain critical elements, thus hindering an economic metal recovery. On the other hand, increasing environmental consciousness as well as limitations of classical methods require innovative recycling methodologies in order to enable a circular economy. Modern biotechnologies can contribute to solve some of the problems related to metal recycling. These approaches use natural properties of organisms, bio-compounds, and biomolecules to interact with minerals, materials, metals, or metal ions such as surface attachment, mineral dissolution, transformation, and metal complexation. Further, modern genetic approaches, e.g. realized by synthetic biology, enable the smart design of new chemicals. The article presents some recent developments in the fields of bioleaching, biosorption, bioreduction, and bioflotation, and their use for metal recovery from different waste materials. Currently only few of these developments are commercialized. Major limitations are high costs in comparison to conventional methods and low element selectivity. The article discusses future trends to overcome these barriers. Especially interdisciplinary approaches, the combination of different technologies, the inclusion of modern genetic methods, as well as the consideration of existing, yet unexplored natural resources will push innovations in these fields.
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18
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Sawada T, Asada M, Serizawa T. Selective Rare Earth Recovery Employing Filamentous Viruses with Chemically Conjugated Peptides. ChemistrySelect 2016. [DOI: 10.1002/slct.201600542] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Toshiki Sawada
- Department of Chemical Science and Engineering; School of Materials and Chemical Technology; Tokyo Institute of Technology; 2-12-1-H121 Ookayama, Meguro-ku Tokyo 152-8550 Japan
| | - Masaya Asada
- Department of Chemical Science and Engineering; School of Materials and Chemical Technology; Tokyo Institute of Technology; 2-12-1-H121 Ookayama, Meguro-ku Tokyo 152-8550 Japan
| | - Takeshi Serizawa
- Department of Chemical Science and Engineering; School of Materials and Chemical Technology; Tokyo Institute of Technology; 2-12-1-H121 Ookayama, Meguro-ku Tokyo 152-8550 Japan
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19
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Biosorption of Pb(II) Ions by Klebsiella sp. 3S1 Isolated from a Wastewater Treatment Plant: Kinetics and Mechanisms Studies. BIOMED RESEARCH INTERNATIONAL 2015; 2015:719060. [PMID: 26504824 PMCID: PMC4609508 DOI: 10.1155/2015/719060] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/14/2015] [Accepted: 07/29/2015] [Indexed: 11/17/2022]
Abstract
Lead biosorption by Klebsiella sp. 3S1 isolated from a wastewater treatment plant was investigated through a Rotatable Central Composite Experimental Design. The optimisation study indicated the following optimal values of operating variables: 0.4 g/L of biosorbent dosage, pH 5, and 34°C. According to the results of the kinetic studies, the biosorption process can be described by a two-step process, one rapid, almost instantaneous, and one slower, both contributing significantly to the overall biosorption; the model that best fits the experimental results was pseudo-second order. The equilibrium studies showed a maximum lead uptake value of 140.19 mg/g according to the Langmuir model. The mechanism study revealed that lead ions were bioaccumulated into the cytoplasm and adsorbed on the cell surface. The bacterium Klebsiella sp. 3S1 has a good potential in the bioremoval of lead in an inexpensive and effective process.
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Yang T, Zhang XY, Zhang XX, Chen ML, Wang JH. Chromium(III) Binding Phage Screening for the Selective Adsorption of Cr(III) and Chromium Speciation. ACS APPLIED MATERIALS & INTERFACES 2015; 7:21287-21294. [PMID: 26346061 DOI: 10.1021/acsami.5b05606] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
The screening of suitable sorption medium is the key for highly selective solid phase extraction (SPE) of heavy metals. Herein, we demonstrate a universal protocol for producing selective SPE adsorbent through an evolutional approach based on phage display peptide library. By choosing chromium(III) as the model target, immobilized Cr(III) resins are first prepared using Ni-NTA affinity resins for the interaction with NEB heptapeptide phage library. After three rounds of positive biopanning against target Cr(III) and negative biopanning against foreign metal species, Cr(III) binding phages with high selectivity are obtained. The binding affinity and selectivity are further assessed with ELISA. The phages bearing peptide (YKASLIT) is finally chosen and immobilized on cytopore beads for Cr(III) preconcentration. The retained Cr(III) is efficiently recovered by 0.10 mol L(-1) HNO3 and quantified with ICP-MS. By loading 4000 μL of sample solution at pH 7.0 for 2 h and stripping with 400 μL of 0.10 mol L(-1) HNO3, a linear range of 0.05-0.50 μg L(-1) is achieved along with an enrichment factor of 7.1. The limit of detection is derived to be 15 ng L(-1) (3σ, n = 7) with a RSD of 3.6% (0.25 μg L(-1), n = 7). The procedure is validated by analyzing chromium content in a certified reference material GBW08608 (simulate water). In addition, chromium speciation in real water samples is demonstrated. Cr(VI) is first converted into Cr(III), and the latter subjected to the sorption onto the Cr(III) binding phage, followed by elution and quantification of the total chromium amount, and finally speciation is achieved by difference.
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Affiliation(s)
- Ting Yang
- Research Center for Analytical Sciences, Northeastern University , Box 332, Shenyang 110819, China
| | - Xiao-Yu Zhang
- Research Center for Analytical Sciences, Northeastern University , Box 332, Shenyang 110819, China
| | - Xiao-Xiao Zhang
- Research Center for Analytical Sciences, Northeastern University , Box 332, Shenyang 110819, China
| | - Ming-Li Chen
- Research Center for Analytical Sciences, Northeastern University , Box 332, Shenyang 110819, China
| | - Jian-Hua Wang
- Research Center for Analytical Sciences, Northeastern University , Box 332, Shenyang 110819, China
- Collaborative Innovation Center of Chemical Science and Engineering, Tianjin 300071, China
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21
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Genetic and chemical modification of cells for selective separation and analysis of heavy metals of biological or environmental significance. Trends Analyt Chem 2015. [DOI: 10.1016/j.trac.2014.11.016] [Citation(s) in RCA: 77] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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22
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Evaluation of zraP gene expression characteristics and construction of a lead (Pb) sensing and removal system in a recombinant Escherichia coli. Biotechnol Lett 2014; 37:659-64. [PMID: 25433463 DOI: 10.1007/s10529-014-1732-x] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2014] [Accepted: 11/05/2014] [Indexed: 10/24/2022]
Abstract
A ZraP-based lead sensing and removal system was constructed in E. coli. It was regulated by the ZraS/ZraR two-component system. The expression profile of the zraP gene towards extracellular lead was studied via real-time PCR. A dual-function bacterial system was also designed to express GFP and OmpC-lead binding peptide under the control of zraP for the simultaneous sensing and adsorption of environmental lead without additional manipulation. The constructed bacterial system can emit fluorescence and it adsorbed a maximum of 487 µmol lead/g cell DCW. From a study of artificial wastewater, the constructed bacteria adsorbed lead highly selectively (427 µmol lead/g cell DCW) among other metal ions. The newly-constructed dual function bacterial system can be applied for the development of an efficient process for the removal of lead from polluted wastes.
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23
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Yoo IK, Choe WS. Screening of Peptide Sequences with Affinity to Bisphenol A by Biopanning. ACTA ACUST UNITED AC 2013. [DOI: 10.7845/kjm.2013.3039] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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