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Hansson M, Youssef HM, Zakhrabekova S, Stuart D, Svensson JT, Dockter C, Stein N, Waugh R, Lundqvist U, Franckowiak J. A guide to barley mutants. Hereditas 2024; 161:11. [PMID: 38454479 PMCID: PMC10921644 DOI: 10.1186/s41065-023-00304-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Accepted: 11/24/2023] [Indexed: 03/09/2024] Open
Abstract
BACKGROUND Mutants have had a fundamental impact upon scientific and applied genetics. They have paved the way for the molecular and genomic era, and most of today's crop plants are derived from breeding programs involving mutagenic treatments. RESULTS Barley (Hordeum vulgare L.) is one of the most widely grown cereals in the world and has a long history as a crop plant. Barley breeding started more than 100 years ago and large breeding programs have collected and generated a wide range of natural and induced mutants, which often were deposited in genebanks around the world. In recent years, an increased interest in genetic diversity has brought many historic mutants into focus because the collections are regarded as valuable resources for understanding the genetic control of barley biology and barley breeding. The increased interest has been fueled also by recent advances in genomic research, which provided new tools and possibilities to analyze and reveal the genetic diversity of mutant collections. CONCLUSION Since detailed knowledge about phenotypic characters of the mutants is the key to success of genetic and genomic studies, we here provide a comprehensive description of mostly morphological barley mutants. The review is closely linked to the International Database for Barley Genes and Barley Genetic Stocks ( bgs.nordgen.org ) where further details and additional images of each mutant described in this review can be found.
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Affiliation(s)
- Mats Hansson
- Department of Biology, Lund University, Sölvegatan 35, 22362, Lund, Sweden.
| | - Helmy M Youssef
- Faculty of Agriculture, Cairo University, Giza, 12613, Egypt
- Institute of Agricultural and Nutritional Sciences, Faculty of Natural Sciences III, Martin Luther University Halle-Wittenberg, Halle, 06120, Germany
| | | | - David Stuart
- Department of Biology, Lund University, Sölvegatan 35, 22362, Lund, Sweden
| | - Jan T Svensson
- Nordic Genetic Resource Center (NordGen), Växthusvägen 12, 23456, Alnarp, Sweden
| | - Christoph Dockter
- Carlsberg Research Laboratory, J. C. Jacobsens Gade 4, 1799, Copenhagen V, Denmark
| | - Nils Stein
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, Stadt Seeland, E06466, Germany
- Center for Integrated Breeding Research (CiBreed), Georg-August-University, Göttingen, Germany
| | - Robbie Waugh
- Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
- Division of Plant Sciences, University of Dundee, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
- School of Agriculture Food and Wine, Waite Campus, The University of Adelaide, Urrbrae, 5064, Australia
| | - Udda Lundqvist
- Nordic Genetic Resource Center (NordGen), Växthusvägen 12, 23456, Alnarp, Sweden
| | - Jerome Franckowiak
- Department of Agronomy and Plant Genetics, University of Minnesota Twin Cities, 411 Borlaug Hall, 1991 Upper Buford Circle, St Paul, MN, 55108, USA
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Gajek K, Janiak A, Korotko U, Chmielewska B, Marzec M, Szarejko I. Whole Exome Sequencing-Based Identification of a Novel Gene Involved in Root Hair Development in Barley ( Hordeum vulgare L.). Int J Mol Sci 2021; 22:ijms222413411. [PMID: 34948205 PMCID: PMC8709170 DOI: 10.3390/ijms222413411] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 11/26/2021] [Accepted: 12/09/2021] [Indexed: 12/30/2022] Open
Abstract
Root hairs play a crucial role in anchoring plants in soil, interaction with microorganisms and nutrient uptake from the rhizosphere. In contrast to Arabidopsis, there is a limited knowledge of root hair morphogenesis in monocots, including barley (Hordeum vulgare L.). We have isolated barley mutant rhp1.e with an abnormal root hair phenotype after chemical mutagenesis of spring cultivar ‘Sebastian’. The development of root hairs was initiated in the mutant but inhibited at the very early stage of tip growth. The length of root hairs reached only 3% of the length of parent cultivar. Using a whole exome sequencing (WES) approach, we identified G1674A mutation in the HORVU1Hr1G077230 gene, located on chromosome 1HL and encoding a cellulose synthase-like C1 protein (HvCSLC1) that might be involved in the xyloglucan (XyG) synthesis in root hairs. The identified mutation led to the retention of the second intron and premature termination of the HvCSLC1 protein. The mutation co-segregated with the abnormal root hair phenotype in the F2 progeny of rhp1.e mutant and its wild-type parent. Additionally, different substitutions in HORVU1Hr1G077230 were found in four other allelic mutants with the same root hair phenotype. Here, we discuss the putative role of HvCSLC1 protein in root hair tube elongation in barley.
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Affiliation(s)
- Katarzyna Gajek
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia, 40-032 Katowice, Poland; (K.G.); (A.J.); (B.C.); (M.M.)
| | - Agnieszka Janiak
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia, 40-032 Katowice, Poland; (K.G.); (A.J.); (B.C.); (M.M.)
| | - Urszula Korotko
- Centre for Bioinformatics and Data Analysis, Medical University of Bialystok, 15-089 Bialystok, Poland;
| | - Beata Chmielewska
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia, 40-032 Katowice, Poland; (K.G.); (A.J.); (B.C.); (M.M.)
| | - Marek Marzec
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia, 40-032 Katowice, Poland; (K.G.); (A.J.); (B.C.); (M.M.)
| | - Iwona Szarejko
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia, 40-032 Katowice, Poland; (K.G.); (A.J.); (B.C.); (M.M.)
- Correspondence:
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Cai G, Carminati A, Abdalla M, Ahmed MA. Soil textures rather than root hairs dominate water uptake and soil-plant hydraulics under drought. PLANT PHYSIOLOGY 2021; 187:858-872. [PMID: 34608949 PMCID: PMC8491061 DOI: 10.1093/plphys/kiab271] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Accepted: 05/21/2021] [Indexed: 05/11/2023]
Abstract
Although the role of root hairs (RHs) in nutrient uptake is well documented, their role in water uptake and drought tolerance remains controversial. Maize (Zea mays) wild-type and its hair-defective mutant (Mut; roothairless 3) were grown in two contrasting soil textures (sand and loam). We used a root pressure chamber to measure the relation between transpiration rate (E) and leaf xylem water potential (ψleaf_x) during soil drying. Our hypotheses were: (1) RHs extend root-soil contact and reduce the ψleaf_x decline at high E in dry soils; (2) the impact of RHs is more pronounced in sand; and (3) Muts partly compensate for lacking RHs by producing longer and/or thicker roots. The ψleaf_x(E) relation was linear in wet conditions and became nonlinear as the soils dried. This nonlinearity occurred more abruptly and at less negative matric potentials in sand (ca. -10 kPa) than in loam (ca. -100 kPa). At more negative soil matric potentials, soil hydraulic conductance became smaller than root hydraulic conductance in both soils. Both genotypes exhibited 1.7 times longer roots in loam, but 1.6 times thicker roots in sand. No differences were observed in the ψleaf_x(E) relation and active root length between the two genotypes. In maize, RHs had a minor contribution to soil-plant hydraulics in both soils and their putative role in water uptake was smaller than that reported for barley (Hordeum vulgare). These results suggest that the role of RHs cannot be easily generalized across species and soil textures affect the response of root hydraulics to soil drying.
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Affiliation(s)
- Gaochao Cai
- Chair of Soil Physics, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, 95447, Germany
- Biogeochemistry of Agroecosystems, University of Göttingen, Göttingen, 37077, Germany
| | - Andrea Carminati
- Department of Environmental Systems Science, Physics of Soils and Terrestrial Ecosystems, Institute of Terrestrial Ecosystems, ETH Zürich, Zurich, 8092, Switzerland
| | - Mohanned Abdalla
- Chair of Soil Physics, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, 95447, Germany
| | - Mutez Ali Ahmed
- Chair of Soil Physics, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, 95447, Germany
- Biogeochemistry of Agroecosystems, University of Göttingen, Göttingen, 37077, Germany
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4
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Abdel-Ghani AH, Sharma R, Wabila C, Dhanagond S, Owais SJ, Duwayri MA, Al-Dalain SA, Klukas C, Chen D, Lübberstedt T, von Wirén N, Graner A, Kilian B, Neumann K. Genome-wide association mapping in a diverse spring barley collection reveals the presence of QTL hotspots and candidate genes for root and shoot architecture traits at seedling stage. BMC PLANT BIOLOGY 2019; 19:216. [PMID: 31122195 PMCID: PMC6533710 DOI: 10.1186/s12870-019-1828-5] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2018] [Accepted: 05/13/2019] [Indexed: 05/19/2023]
Abstract
BACKGROUND Adaptation to drought-prone environments requires robust root architecture. Genotypes with a more vigorous root system have the potential to better adapt to soils with limited moisture content. However, root architecture is complex at both, phenotypic and genetic level. Customized mapping panels in combination with efficient screenings methods can resolve the underlying genetic factors of root traits. RESULTS A mapping panel of 233 spring barley genotypes was evaluated for root and shoot architecture traits under non-stress and osmotic stress. A genome-wide association study elucidated 65 involved genomic regions. Among them were 34 root-specific loci, eleven hotspots with associations to up to eight traits and twelve stress-specific loci. A list of candidate genes was established based on educated guess. Selected genes were tested for associated polymorphisms. By this, 14 genes were identified as promising candidates, ten remained suggestive and 15 were rejected. The data support the important role of flowering time genes, including HvPpd-H1, HvCry2, HvCO4 and HvPRR73. Moreover, seven root-related genes, HERK2, HvARF04, HvEXPB1, PIN5, PIN7, PME5 and WOX5 are confirmed as promising candidates. For the QTL with the highest allelic effect for root thickness and plant biomass a homologue of the Arabidopsis Trx-m3 was revealed as the most promising candidate. CONCLUSIONS This study provides a catalogue of hotspots for seedling growth, root and stress-specific genomic regions along with candidate genes for future potential incorporation in breeding attempts for enhanced yield potential, particularly in drought-prone environments. Root architecture is under polygenic control. The co-localization of well-known major genes for barley development and flowering time with QTL hotspots highlights their importance for seedling growth. Association analysis revealed the involvement of HvPpd-H1 in the development of the root system. The co-localization of root QTL with HERK2, HvARF04, HvEXPB1, PIN5, PIN7, PME5 and WOX5 represents a starting point to explore the roles of these genes in barley. Accordingly, the genes HvHOX2, HsfA2b, HvHAK2, and Dhn9, known to be involved in abiotic stress response, were located within stress-specific QTL regions and await future validation.
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Affiliation(s)
- Adel H. Abdel-Ghani
- Department of Plant Production, Faculty of Agriculture, Mutah University, Mutah, Karak, 61710 Jordan
| | - Rajiv Sharma
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland, Germany
- Division of Plant Science, University of Dundee at JHI, Invergowrie, Dundee, DD2 5DA UK
| | - Celestine Wabila
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland, Germany
| | - Sidram Dhanagond
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland, Germany
| | - Saed J. Owais
- Department of Plant Production, Faculty of Agriculture, Mutah University, Mutah, Karak, 61710 Jordan
| | - Mahmud A. Duwayri
- Department of Horticulture and Agronomy, Faculty of Agriculture, University of Jordan, Amman, Jordan
| | - Saddam A. Al-Dalain
- Al-Shoubak University College, Al-Balqa’ Applied University, Al-, Salt, 19117 Jordan
| | - Christian Klukas
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland, Germany
- Digitalization in Research & Development (ROM), BASF SE, 67056 Ludwigshafen, Germany
| | - Dijun Chen
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland, Germany
- Department for Plant Cell and Molecular Biology, Institute for Biology, Humboldt University Berlin, 10115 Berlin, Germany
| | - Thomas Lübberstedt
- Department of Agronomy, Agronomy Hall, Iowa State University, Ames, IA 50011 USA
| | - Nicolaus von Wirén
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland, Germany
| | - Andreas Graner
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland, Germany
- Martin-Luther-University Halle-Wittenberg, Betty-Heimann-Str. 3, 06120 Halle/Saale, Germany
| | - Benjamin Kilian
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland, Germany
- Global Crop Diversity Trust, Platz der Vereinten Nationen 7, 53113 Bonn, Germany
| | - Kerstin Neumann
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland, Germany
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Liu TY, Ye N, Song T, Cao Y, Gao B, Zhang D, Zhu F, Chen M, Zhang Y, Xu W, Zhang J. Rhizosheath formation and involvement in foxtail millet (Setaria italica) root growth under drought stress. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2019; 61:449-462. [PMID: 30183129 DOI: 10.1111/jipb.12716] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2018] [Accepted: 09/03/2018] [Indexed: 06/08/2023]
Abstract
The rhizosheath, a layer of soil particles that adheres firmly to the root surface by a combination of root hairs and mucilage, may improve tolerance to drought stress. Setaria italica (L.) P. Beauv. (foxtail millet), a member of the Poaceae family, is an important food and fodder crop in arid regions and forms a larger rhizosheath under drought conditions. Rhizosheath formation under drought conditions has been studied, but the regulation of root hair growth and rhizosheath size in response to soil moisture remains unclear. To address this question, in this study we monitored root hair growth and rhizosheath development in response to a gradual decline in soil moisture. Here, we determined that a soil moisture level of 10%-14% (w/w) stimulated greater rhizosheath production compared to other soil moisture levels. Root hair density and length also increased at this soil moisture level, which was validated by measurement of the expression of root hair-related genes. These findings contribute to our understanding of rhizosheath formation in response to soil water stress.
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Affiliation(s)
- Tie-Yuan Liu
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
| | - Nenghui Ye
- Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, Hunan Agricultural University, Changsha 410128, China
- Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, China
| | - Tao Song
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
- Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, China
| | - Yunying Cao
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
- College of Life Sciences, Nantong University, Nantong 226019, China
| | - Bei Gao
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
| | - Di Zhang
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
| | - Fuyuan Zhu
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
- Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, China
| | - Moxian Chen
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
- Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, China
| | - Yingjiao Zhang
- Center for Plant Water-use and Nutrition Regulation and College of Life Sciences, Joint International Research Laboratory of Water and Nutrient in Crop, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Weifeng Xu
- Center for Plant Water-use and Nutrition Regulation and College of Life Sciences, Joint International Research Laboratory of Water and Nutrient in Crop, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Jianhua Zhang
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
- Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, China
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Gajewska P, Janiak A, Kwasniewski M, Kędziorski P, Szarejko I. Forward Genetics Approach Reveals a Mutation in bHLH Transcription Factor-Encoding Gene as the Best Candidate for the Root Hairless Phenotype in Barley. FRONTIERS IN PLANT SCIENCE 2018; 9:1229. [PMID: 30233607 PMCID: PMC6129617 DOI: 10.3389/fpls.2018.01229] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2018] [Accepted: 08/03/2018] [Indexed: 05/29/2023]
Abstract
Root hairs are the part of root architecture contributing significantly to the root surface area. Their role is particularly substantial in maintaining plant growth under stress conditions, however, knowledge on mechanism of root hair differentiation is still limited for majority of crop species, including barley. Here, we report the results of a map-based identification of a candidate gene responsible for the lack of root epidermal cell differentiation, which results in the lack of root hairs in barley. The analysis was based on the root hairless barley mutant rhl1.b, obtained after chemical mutagenesis of spring cultivar 'Karat'. The rhl1 gene was located in chromosome 7HS in our previous studies. Fine mapping allowed to narrow the interval encompassing rhl1 gene to 3.7 cM, which on physical barley map spans a region of 577 kb. Five high confidence genes are located within this region and their sequencing resulted in the identification of A>T mutation in one candidate, HORVU7Hr1G030250 (MLOC_38567), differing the mutant from its parent variety. The mutation, located in the 3' splice-junction site, caused the retention of the last intron, 98 bp long, in mRNA of rhl1.b allele. This resulted in the frameshift, the synthesis of 71 abnormal amino acids and introduction of premature STOP codon in mRNA. The mutation was present in the recombinants from the mapping population (F2rhl1.b × 'Morex') that lacked root hairs. The candidate gene encodes a bHLH transcription factor with LRL domain and may be involved in early stages of root hair cell development. We discuss the possible involvement of HORVU7Hr1G030250 in this process, as the best candidate responsible for early stages of rhizodermis differentiation in barley.
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Affiliation(s)
- Patrycja Gajewska
- Department of Genetics, University of Silesia in Katowice, Katowice, Poland
| | - Agnieszka Janiak
- Department of Genetics, University of Silesia in Katowice, Katowice, Poland
| | - Miroslaw Kwasniewski
- Department of Genetics, University of Silesia in Katowice, Katowice, Poland
- Centre for Bioinformatics and Data Analysis, Medical University of Bialystok, Bialystok, Poland
| | - Piotr Kędziorski
- Department of Genetics, University of Silesia in Katowice, Katowice, Poland
| | - Iwona Szarejko
- Department of Genetics, University of Silesia in Katowice, Katowice, Poland
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Milewska-Hendel A, Zubko M, Karcz J, Stróż D, Kurczyńska E. Fate of neutral-charged gold nanoparticles in the roots of the Hordeum vulgare L. cultivar Karat. Sci Rep 2017; 7:3014. [PMID: 28592798 PMCID: PMC5462829 DOI: 10.1038/s41598-017-02965-w] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2016] [Accepted: 04/20/2017] [Indexed: 12/15/2022] Open
Abstract
Nanoparticles (NPs) have a significant impact on the environment and living organisms. The influence of NPs on plants is intensively studied and most of the data indicate that NPs can penetrate into plants. The studies presented here were performed on the roots of Hordeum vulgare L. seedlings using neutral-charge gold nanoparticles (AuNPs) of different sizes. In contrast to the majority of the published data, the results presented here showed that during the culture period, AuNPs: 1/did not enter the root regardless of their size and concentration, 2/that are applied directly into the cells of a root do not move into neighbouring cells. The results that were obtained indicate that in order to extend our knowledge about the mechanisms of the interactions between NPs and plants, further studies including, among others, on different species and a variety of growth conditions are needed.
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Affiliation(s)
- Anna Milewska-Hendel
- Department of Cell Biology, Faculty of Biology and Environmental Protection, University of Silesia in Katowice, 28 Jagiellońska Street, Katowice, 40-032, Poland.
| | - Maciej Zubko
- Institute of Materials Science, Faculty of Computer Science and Materials Science, University of Silesia in Katowice, 75 Pułku Piechoty Street 1a, Chorzów, 41-500, Poland
| | - Jagna Karcz
- Laboratory of Scanning Electron Microscopy, Faculty of Biology and Environmental Protection, University of Silesia in Katowice, 28 Jagiellońska Street, Katowice, 40-032, Poland
| | - Danuta Stróż
- Institute of Materials Science, Faculty of Computer Science and Materials Science, University of Silesia in Katowice, 75 Pułku Piechoty Street 1a, Chorzów, 41-500, Poland
| | - Ewa Kurczyńska
- Department of Cell Biology, Faculty of Biology and Environmental Protection, University of Silesia in Katowice, 28 Jagiellońska Street, Katowice, 40-032, Poland
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Robertson-Albertyn S, Alegria Terrazas R, Balbirnie K, Blank M, Janiak A, Szarejko I, Chmielewska B, Karcz J, Morris J, Hedley PE, George TS, Bulgarelli D. Root Hair Mutations Displace the Barley Rhizosphere Microbiota. FRONTIERS IN PLANT SCIENCE 2017; 8:1094. [PMID: 28694814 PMCID: PMC5483447 DOI: 10.3389/fpls.2017.01094] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2017] [Accepted: 06/06/2017] [Indexed: 05/03/2023]
Abstract
The rhizosphere, the thin layer of soil surrounding and influenced by plant roots, defines a distinct and selective microbial habitat compared to unplanted soil. The microbial communities inhabiting the rhizosphere, the rhizosphere microbiota, engage in interactions with their host plants which span from parasitism to mutualism. Therefore, the rhizosphere microbiota emerges as one of the determinants of yield potential in crops. Studies conducted with different plant species have unequivocally pointed to the host plant as a driver of the microbiota thriving at the root-soil interface. Thus far, the host genetic traits shaping the rhizosphere microbiota are not completely understood. As root hairs play a critical role in resource exchanges between plants and the rhizosphere, we hypothesized that they can act as a determinant of the microbiota thriving at the root-soil interface. To test this hypothesis, we took advantage of barley (Hordeum vulgare) mutant lines contrasting for their root hair characteristics. Plants were grown in two agricultural soils, differentiating in their organic matter contents, under controlled environmental conditions. At early stem elongation rhizosphere specimens were collected and subjected to high-resolution 16S rRNA gene profiling. Our data revealed that the barley rhizosphere microbiota is largely dominated by members of the phyla Bacteroidetes and Proteobacteria, regardless of the soil type and the root hair characteristics of the host plant. Conversely, ecological indices calculated using operational taxonomic units (OTUs) presence, abundance, and phylogeny revealed a significant impact of root hair mutations on the composition of the rhizosphere microbiota. In particular, our data indicate that mutant plants host a reduced-complexity community compared to wild-type genotypes and unplanted soil controls. Congruently, the host genotype explained up to 18% of the variation in ecological distances computed for the rhizosphere samples. Importantly, this effect is manifested in a soil-dependent manner. A closer inspection of the sequencing profiles revealed that the root hair-dependent diversification of the microbiota is supported by a taxonomically narrow group of bacteria, with a bias for members of the orders Actinomycetales, Burkholderiales, Rhizobiales, Sphingomonadales, and Xanthomonadales. Taken together, our results indicate that the presence and function of root hairs are a determinant of the bacterial community thriving in the rhizosphere and their perturbations can markedly impact on the recruitment of individual members of the microbiota.
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Affiliation(s)
| | | | - Katharin Balbirnie
- Plant Sciences, School of Life Sciences, University of DundeeDundee, United Kingdom
| | - Manuel Blank
- Plant Sciences, School of Life Sciences, University of DundeeDundee, United Kingdom
| | - Agnieszka Janiak
- Department of Genetics, University of Silesia in KatowiceKatowice, Poland
| | - Iwona Szarejko
- Department of Genetics, University of Silesia in KatowiceKatowice, Poland
| | - Beata Chmielewska
- Department of Genetics, University of Silesia in KatowiceKatowice, Poland
| | - Jagna Karcz
- Scanning Electron Microscopy Laboratory, University of Silesia in KatowiceKatowice, Poland
| | - Jenny Morris
- Cell and Molecular Sciences, The James Hutton InstituteDundee, United Kingdom
| | - Pete E. Hedley
- Cell and Molecular Sciences, The James Hutton InstituteDundee, United Kingdom
| | - Timothy S. George
- Ecological Sciences, The James Hutton InstituteDundee, United Kingdom
| | - Davide Bulgarelli
- Plant Sciences, School of Life Sciences, University of DundeeDundee, United Kingdom
- *Correspondence: Davide Bulgarelli,
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9
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Slota M, Maluszynski M, Szarejko I. An automated, cost-effective and scalable, flood-and-drain based root phenotyping system for cereals. PLANT METHODS 2016; 12:34. [PMID: 27347000 PMCID: PMC4919847 DOI: 10.1186/s13007-016-0135-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2016] [Accepted: 06/17/2016] [Indexed: 05/24/2023]
Abstract
BACKGROUND Genetic studies on the molecular mechanisms of the regulation of root growth require the characterisation of a specific root phenotype to be linked with a certain genotype. Such studies using classical labour-intensive methods are severely hindered due to the technical limitations that are associated with the impeded observation of the root system of a plant during its growth. The aim of the research presented here was to develop a reliable, cost-effective method for the analysis of a plant root phenotype that would enable the precise characterisation of the root system architecture of cereals. RESULTS The presented method describes a complete system for automatic supplementation and continuous sensing of culture solution supplied to plants that are grown in transparent tubes containing a solid substrate. The presented system comprises the comprehensive pipeline consisting of a modular-based and remotely-controlled plant growth system and customized imaging setup for root and shoot phenotyping. The system enables an easy extension of the experimental capacity in order to form a combined platform that is comprised of parallel modules, each holding up to 48 plants. The conducted experiments focused on the selection of the most suitable conditions for phenotyping studies in barley: an optimal size of the glass beads, diameters of the acrylic tubes, composition of a medium, and a rate of the medium flow. CONCLUSIONS The developed system enables an efficient, accurate and highly repeatable analysis of the morphological features of the root system of cereals. Because a simple and fully-automated control system is used, the experimental conditions can easily be normalised for different species of cereals. The scalability of the module-based system allows its capacity to be adjusted in order to meet the requirements of a particular experiment.
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Affiliation(s)
- Michal Slota
- Department of Genetics, Faculty of Biology and Environmental Protection, University of Silesia, Jagiellonska 28, 40-032 Katowice, Poland
| | - Miroslaw Maluszynski
- Department of Genetics, Faculty of Biology and Environmental Protection, University of Silesia, Jagiellonska 28, 40-032 Katowice, Poland
| | - Iwona Szarejko
- Department of Genetics, Faculty of Biology and Environmental Protection, University of Silesia, Jagiellonska 28, 40-032 Katowice, Poland
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10
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Kwasniewski M, Daszkowska-Golec A, Janiak A, Chwialkowska K, Nowakowska U, Sablok G, Szarejko I. Transcriptome analysis reveals the role of the root hairs as environmental sensors to maintain plant functions under water-deficiency conditions. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:1079-94. [PMID: 26585228 PMCID: PMC4753848 DOI: 10.1093/jxb/erv498] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
An important part of the root system is the root hairs, which play a role in mineral and water uptake. Here, we present an analysis of the transcriptomic response to water deficiency of the wild-type (WT) barley cultivar 'Karat' and its root-hairless mutant rhl1.a. A comparison of the transcriptional changes induced by water stress resulted in the identification of genes whose expression was specifically affected in each genotype. At the onset of water stress, more genes were modulated by water shortage in the roots of the WT plants than in the roots of rhl1.a. The roots of the WT plants, but not of rhl1.a, specifically responded with the induction of genes that are related to the abscisic acid biosynthesis, stomatal closure, and cell wall biogenesis, thus indicating the specific activation of processes that are related to water-stress signalling and protection. On the other hand, the processes involved in the further response to abiotic stimuli, including hydrogen peroxide, heat, and high light intensity, were specifically up-regulated in the leaves of rhl1.a. An extended period of severe stress caused more drastic transcriptome changes in the roots and leaves of the rhl1.a mutant than in those of the WT. These results are in agreement with the much stronger damage to photosystem II in the rhl1.a mutant than in its parent cultivar after 10 d of water stress. Taking into account the putative stress sensing and signalling features of the root hair transcriptome, we discuss the role of root hairs as sensors of environmental conditions.
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Affiliation(s)
- Miroslaw Kwasniewski
- Department of Genetics, University of Silesia in Katowice, 40-032 Katowice, Poland
| | | | - Agnieszka Janiak
- Department of Genetics, University of Silesia in Katowice, 40-032 Katowice, Poland
| | | | - Urszula Nowakowska
- Department of Genetics, University of Silesia in Katowice, 40-032 Katowice, Poland
| | - Gaurav Sablok
- Plant Functional Biology and Climate Change Cluster, University of Technology, Sydney, Ultimo, NSW 2007, Australia
| | - Iwona Szarejko
- Department of Genetics, University of Silesia in Katowice, 40-032 Katowice, Poland
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11
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Marzec M, Melzer M, Szarejko I. Root hair development in the grasses: what we already know and what we still need to know. PLANT PHYSIOLOGY 2015; 168:407-14. [PMID: 25873551 PMCID: PMC4453783 DOI: 10.1104/pp.15.00158] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2015] [Accepted: 04/08/2015] [Indexed: 05/03/2023]
Abstract
A priority in many crop improvement programs for a long time has been to enhance the tolerance level of plants to both abiotic and biotic stress. Recognition that the root system is the prime determinant of a plant's ability to extract both water and minerals from the soil implies that its architecture is an important variable underlying a cultivar's adaptation. The density and/or length of the root hairs (RHs) that are formed are thought to have a major bearing on the plant's performance under stressful conditions. Any attempt to improve a crop's root system will require a detailed understanding of the processes of RH differentiation. Recent progress in uncovering the molecular basis of root epidermis specialization has been recorded in the grasses. This review seeks to present the current view of RH differentiation in grass species. It combines what has been learned from molecular-based analyses, histological studies, and observation of the phenotypes of both laboratory- and field-grown plants.
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Affiliation(s)
- Marek Marzec
- Department of Genetics, Faculty of Biology and Environmental Protection, University of Silesia, 40-032 Katowice, Poland (M.Ma., I.S.); andDepartment of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research, D-06466 Gatersleben, Germany (M.Me.)
| | - Michael Melzer
- Department of Genetics, Faculty of Biology and Environmental Protection, University of Silesia, 40-032 Katowice, Poland (M.Ma., I.S.); andDepartment of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research, D-06466 Gatersleben, Germany (M.Me.)
| | - Iwona Szarejko
- Department of Genetics, Faculty of Biology and Environmental Protection, University of Silesia, 40-032 Katowice, Poland (M.Ma., I.S.); andDepartment of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research, D-06466 Gatersleben, Germany (M.Me.)
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12
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Marzec M, Szarejko I, Melzer M. Arabinogalactan proteins are involved in root hair development in barley. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:1245-57. [PMID: 25465033 PMCID: PMC4339589 DOI: 10.1093/jxb/eru475] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
The arabinogalactan proteins (AGPs) are involved in a range of plant processes, including cell differentiation and expansion. Here, barley root hair mutants and their wild-type parent cultivars were used, as a model system, to reveal the role of AGPs in root hair development. The treatment of roots with different concentrations of βGlcY (a reagent which binds to all classes of AGPs) inhibited or totally suppressed the development of root hairs in all of the cultivars. Three groups of AGP (recognized by the monoclonal antibodies LM2, LM14, and MAC207) were diversely localized in trichoblasts and atrichoblasts of root hair-producing plants. The relevant epitopes were present in wild-type trichoblast cell walls and cytoplasm, whereas in wild-type atrichoblasts and in all epidermal cells of a root hairless mutant, they were only present in the cytoplasm. In all of cultivars the higher expression of LM2, LM14, and MAC207 was observed in trichoblasts at an early stage of development. Additionally, the LM2 epitope was detected on the surface of primordia and root hair tubes in plants able to generate root hairs. The major conclusion was that the AGPs recognized by LM2, LM14, and MAC207 are involved in the differentiation of barley root epidermal cells, thereby implying a requirement for these AGPs for root hair development in barley.
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Affiliation(s)
- Marek Marzec
- Department of Genetics, Faculty of Biology and Environmental Protection, University of Silesia, Katowice 40-032, Poland
| | - Iwona Szarejko
- Department of Genetics, Faculty of Biology and Environmental Protection, University of Silesia, Katowice 40-032, Poland
| | - Michael Melzer
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben D-06466, Germany
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