Application of Machine Learning for Clinical Subphenotype Identification in Sepsis

Early sepsis mortality prediction model based on interpretable machine learning approach: development and validation study

Sepsis triggers a harmful immune response due to infection, causing high mortality. Predicting sepsis outcomes early is vital. Despite machine learning's (ML) use in medical research, local validation within the Medical Information Mart for Intensive Care IV (MIMIC-IV) database is lacking. We aimed to devise a prognostic model, leveraging MIMIC-IV data, to predict sepsis mortality and validate it in a Chinese teaching hospital. MIMIC-IV provided patient data, split into training and internal validation sets. Four ML models logistic regression (LR), support vector machine (SVM), deep neural networks (DNN), and extreme gradient boosting (XGBoost) were employed. Shapley additive interpretation offered early and interpretable mortality predictions. Area under the ROC curve (AUROC) gaged predictive performance. Results were cross verified in a Chinese teaching hospital. The study included 27,134 sepsis patients from MIMIC-IV and 487 from China. After comparing, 52 clinical indicators were selected for ML model development. All models exhibited excellent discriminative ability. XGBoost surpassed others, with AUROC of 0.873 internally and 0.844 externally. XGBoost outperformed other ML models (LR: 0.829; SVM: 0.830; DNN: 0.837) and clinical scores (Simplified Acute Physiology Score II: 0.728; Sequential Organ Failure Assessment: 0.728; Oxford Acute Severity of Illness Score: 0.738; Glasgow Coma Scale: 0.691). XGBoost's hospital mortality prediction achieved AUROC 0.873, sensitivity 0.818, accuracy 0.777, specificity 0.768, and F1 score 0.551. We crafted an interpretable model for sepsis death risk prediction. ML algorithms surpassed traditional scores for sepsis mortality forecast. Validation in a Chinese teaching hospital echoed these findings.

Advancing specificity in delirium: The delirium subtyping initiative

BACKGROUND

Delirium, a common syndrome with heterogeneous etiologies and clinical presentations, is associated with poor long-term outcomes. Recording and analyzing all delirium equally could be hindering the field's understanding of pathophysiology and identification of targeted treatments. Current delirium subtyping methods reflect clinically evident features but likely do not account for underlying biology.

METHODS

The Delirium Subtyping Initiative (DSI) held three sessions with an international panel of 25 experts.

RESULTS

Meeting participants suggest further characterization of delirium features to complement the existing Diagnostic and Statistical Manual of Mental Disorders Fifth Edition Text Revision diagnostic criteria. These should span the range of delirium-spectrum syndromes and be measured consistently across studies. Clinical features should be recorded in conjunction with biospecimen collection, where feasible, in a standardized way, to determine temporal associations of biology coincident with clinical fluctuations.

DISCUSSION

The DSI made recommendations spanning the breadth of delirium research including clinical features, study planning, data collection, and data analysis for characterization of candidate delirium subtypes.

HIGHLIGHTS

Delirium features must be clearly defined, standardized, and operationalized. Large datasets incorporating both clinical and biomarker variables should be analyzed together. Delirium screening should incorporate communication and reasoning.

Joint Modeling of Social Determinants and Clinical Factors to Define Subphenotypes in Out-of-Hospital Cardiac Arrest Survival: Cluster Analysis

Background

Machine learning clustering offers an unbiased approach to better understand the interactions of complex social and clinical variables via integrative subphenotypes, an approach not studied in out-of-hospital cardiac arrest (OHCA).

Objective

We conducted a cluster analysis for a cohort of OHCA survivors to examine the association of clinical and social factors for mortality at 1 year.

Methods

We used a retrospective observational OHCA cohort identified from Medicare claims data, including area-level social determinants of health (SDOH) features and hospital-level data sets. We applied k-means clustering algorithms to identify subphenotypes of beneficiaries who had survived an OHCA and examined associations of outcomes by subphenotype.

Results

We identified 27,028 unique beneficiaries who survived to discharge after OHCA. We derived 4 distinct subphenotypes. Subphenotype 1 included a distribution of more urban, female, and Black beneficiaries with the least robust area-level SDOH measures and the highest 1-year mortality (2375/4417, 53.8%). Subphenotype 2 was characterized by a greater distribution of male, White beneficiaries and had the strongest zip code-level SDOH measures, with 1-year mortality at 49.9% (4577/9165). Subphenotype 3 had the highest rates of cardiac catheterization at 34.7% (1342/3866) and the greatest distribution with a driving distance to the index OHCA hospital from their primary residence >16.1 km at 85.4% (8179/9580); more were also discharged to a skilled nursing facility after index hospitalization. Subphenotype 4 had moderate median household income at US $51,659.50 (IQR US $41,295 to $67,081) and moderate to high median unemployment at 5.5% (IQR 4.2%-7.1%), with the lowest 1-year mortality (1207/3866, 31.2%). Joint modeling of these features demonstrated an increased hazard of death for subphenotypes 1 to 3 but not for subphenotype 4 when compared to reference.

Conclusions

We identified 4 distinct subphenotypes with differences in outcomes by clinical and area-level SDOH features for OHCA. Further work is needed to determine if individual or other SDOH domains are specifically tied to long-term survival after OHCA.

The PaO2/FiO2 is independently associated with 28-day mortality in patients with sepsis: a retrospective analysis from MIMIC-IV database

BACKGROUND

To clarify the relationship between the PaO₂/FiO₂ and 28-day mortality in patients with sepsis.

METHODS

This was a retrospective cohort study regarding MIMIC-IV database. Nineteen thousand two hundred thirty-three patients with sepsis were included in the final analysis. PaO₂/FiO₂ was exposure variable, 28-day mortality was outcome variable. PaO₂/FiO₂ was log-transformed as LnPaO₂/FiO₂. Binary logistic regression was used to explore the independent effects of LnPaO₂/FiO₂ on 28-day mortality using non-adjusted and multivariate-adjusted models. A generalized additive model (GAM) and smoothed curve fitting was used to investigate the non-linear relationship between LnPaO₂/FiO₂ and 28-day mortality. A two-piecewise linear model was used to calculate the OR and 95% CI on either side of the inflection point.

RESULTS

The relationship between LnPaO₂/FiO₂ and risk of 28-day death in sepsis patients was U-shape. The inflection point of LnPaO₂/FiO₂ was 5.30 (95%CI: 5.21-5.39), which indicated the inflection point of PaO₂/FiO₂ was 200.33 mmHg (95%CI: 183.09 mmHg-219.20 mmHg). On the left of inflection point, LnPaO₂/FiO₂ was negatively correlated with 28-day mortality (OR: 0.37, 95%CI: 0.32-0.43, p < 0.0001). On the right of inflection point, LnPaO₂/FiO₂ was positively correlated with 28-day mortality in patients with sepsis (OR: 1.53, 95%CI: 1.31-1.80, p < 0.0001).

CONCLUSIONS

In patients with sepsis, either a high or low PaO₂/FiO₂ was associated with an increased risk of 28-day mortality. In the range of 183.09 mmHg to 219.20 mmHg, PaO₂/FiO₂ was associated with a lower risk of 28-day death in patients with sepsis.

Identification of spinal tuberculosis subphenotypes using routine clinical data: a study based on unsupervised machine learning

OBJECTIVE

The identification of spinal tuberculosis subphenotypes is an integral component of precision medicine. However, we lack proper study models to identify subphenotypes in patients with spinal tuberculosis. Here we identified possible subphenotypes of spinal tuberculosis and compared their clinical results.

METHODS

A total of 422 patients with spinal tuberculosis who received surgical treatment were enrolled. Clustering analysis was performed using the K-means clustering algorithm and the routinely available clinical data collected from patients within 24 h after admission. Finally, the differences in clinical characteristics, surgical efficacy, and postoperative complications among the subphenotypes were compared.

RESULTS

Two subphenotypes of spinal tuberculosis were identified. Laboratory examination results revealed that the levels of more than one inflammatory index in cluster 2 were higher than those in cluster 1. In terms of disease severity, Cluster 2 showed a higher Oswestry Disability Index (ODI), a higher visual analysis scale (VAS) score, and a lower Japanese Orthopedic Association (JOA) score. In addition, in terms of postoperative outcomes, cluster 2 patients were more prone to complications, especially wound infections, and had a longer hospital stay.

CONCLUSION

K-means clustering analysis based on conventional available clinical data can rapidly identify two subtypes of spinal tuberculosis with different clinical results. We believe this finding will help clinicians to rapidly and easily identify the subtypes of spinal tuberculosis at the bedside and become the cornerstone of individualized treatment strategies.