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'Muscle superman' Cristobal Guillermo dos Remedios: five decades of endless energy. Biophys Rev 2020; 12:755-756. [PMID: 32642926 DOI: 10.1007/s12551-020-00718-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Accepted: 07/02/2020] [Indexed: 10/23/2022] Open
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2
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Exploring the stability limits of actin and its suprastructures. Biophys J 2016; 107:2982-2992. [PMID: 25517163 DOI: 10.1016/j.bpj.2014.11.006] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2014] [Revised: 10/28/2014] [Accepted: 11/05/2014] [Indexed: 12/30/2022] Open
Abstract
Actin is the main component of the microfilament system in eukaryotic cells and can be found in distinct morphological states. Global (G)-actin is able to assemble into highly organized, supramolecular cellular structures known as filamentous (F)-actin and bundled (B)-actin. To evaluate the structure and stability of G-, F-, and B-actin over a wide range of temperatures and pressures, we used Fourier transform infrared spectroscopy in combination with differential scanning and pressure perturbation calorimetry, small-angle x-ray scattering, laser confocal scanning microscopy, and transmission electron microscopy. Our analysis was designed to provide new (to our knowledge) insights into the stabilizing forces of actin self-assembly and to reveal the stability of the actin polymorphs, including in conditions encountered in extreme environments. In addition, we sought to explain the limited pressure stability of actin self-assembly observed in vivo. G-actin is not only the least temperature-stable but also the least pressure-stable actin species. Under abyssal conditions, where temperatures as low as 1-4°C and pressures up to 1 kbar are reached, G-actin is hardly stable. However, the supramolecular assemblies of actin are stable enough to withstand the extreme conditions usually encountered on Earth. Beyond ∼3-4 kbar, filamentous structures disassemble, and beyond ∼4 kbar, complete dissociation of F-actin structures is observed. Between ∼1 and 2 kbar, some disordering of actin assemblies commences, in agreement with in vivo observations. The limited pressure stability of the monomeric building block seems to be responsible for the suppression of actin assembly in the kbar pressure range.
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3
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M. Bansbach H, H. Guilford W. Actin nitrosylation and its effect on myosin driven motility. AIMS MOLECULAR SCIENCE 2016. [DOI: 10.3934/molsci.2016.3.426] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
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4
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Gralka M, Kroy K. Inelastic mechanics: A unifying principle in biomechanics. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 2015; 1853:3025-37. [PMID: 26151340 DOI: 10.1016/j.bbamcr.2015.06.017] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2015] [Revised: 05/13/2015] [Accepted: 06/26/2015] [Indexed: 01/16/2023]
Abstract
Many soft materials are classified as viscoelastic. They behave mechanically neither quite fluid-like nor quite solid-like - rather a bit of both. Biomaterials are often said to fall into this class. Here, we argue that this misses a crucial aspect, and that biomechanics is essentially damage mechanics, at heart. When deforming an animal cell or tissue, one can hardly avoid inducing the unfolding of protein domains, the unbinding of cytoskeletal crosslinkers, the breaking of weak sacrificial bonds, and the disruption of transient adhesions. We classify these activated structural changes as inelastic. They are often to a large degree reversible and are therefore not plastic in the proper sense, but they dissipate substantial amounts of elastic energy by structural damping. We review recent experiments involving biological materials on all scales, from single biopolymers over cells to model tissues, to illustrate the unifying power of this paradigm. A deliberately minimalistic yet phenomenologically very rich mathematical modeling framework for inelastic biomechanics is proposed. It transcends the conventional viscoelastic paradigm and suggests itself as a promising candidate for a unified description and interpretation of a wide range of experimental data. This article is part of a Special Issue entitled: Mechanobiology.
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Affiliation(s)
- Matti Gralka
- Institute for Theoretical Physics, University of Leipzig, Bruederstr. 16, 04103 Leipzig, Germany.
| | - Klaus Kroy
- Institute for Theoretical Physics, University of Leipzig, Bruederstr. 16, 04103 Leipzig, Germany.
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5
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Nagwekar J, Duggal D, Rich R, Raut S, Fudala R, Gryczynski I, Gryczynski Z, Borejdo J. The spatial distribution of actin and mechanical cycle of myosin are different in right and left ventricles of healthy mouse hearts. Biochemistry 2014; 53:7641-9. [PMID: 25488019 PMCID: PMC4262935 DOI: 10.1021/bi501175s] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
![]()
The contraction of the right ventricle
(RV) expels blood into the
pulmonary circulation, and the contraction of the left ventricle (LV)
pumps blood into the systemic circulation through the aorta. The respective
afterloads imposed on the LV and RV by aortic and pulmonary artery
pressures create very different mechanical requirements for the two
ventricles. Indeed, differences have been observed in the contractile
performance between left and right ventricular myocytes in dilated
cardiomyopathy, in congestive heart failure, and in energy usage and
speed of contraction at light loads in healthy hearts. In spite of
these functional differences, it is commonly believed that the right
and left ventricular muscles are identical because there were no differences
in stress development, twitch duration, work performance, or power
among the RV and LV in dogs. This report shows that on a mesoscopic
scale [when only a few molecules are studied (here three to six molecules
of actin) in ex vivo ventricular myofibrils], the
two ventricles in rigor differ in the degree of orientational disorder
of actin within in filaments and during contraction in the kinetics
of the cross-bridge cycle.
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Affiliation(s)
- J Nagwekar
- Department of Cell Biology and Center for Fluorescence Technology and Nanomedicine, University of North Texas Health Science Center , 3500 Camp Bowie Boulevard, Fort Worth, Texas 76107, United States
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6
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Müller M, Mazur AJ, Behrmann E, Diensthuber RP, Radke MB, Qu Z, Littwitz C, Raunser S, Schoenenberger CA, Manstein DJ, Mannherz HG. Functional characterization of the human α-cardiac actin mutations Y166C and M305L involved in hypertrophic cardiomyopathy. Cell Mol Life Sci 2012; 69:3457-79. [PMID: 22643837 PMCID: PMC11115188 DOI: 10.1007/s00018-012-1030-5] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2011] [Revised: 04/22/2012] [Accepted: 05/07/2012] [Indexed: 11/25/2022]
Abstract
Inherited cardiomyopathies are caused by point mutations in sarcomeric gene products, including α-cardiac muscle actin (ACTC1). We examined the biochemical and cell biological properties of the α-cardiac actin mutations Y166C and M305L identified in hypertrophic cardiomyopathy (HCM). Untagged wild-type (WT) cardiac actin, and the Y166C and M305L mutants were expressed by the baculovirus/Sf9-cell system and affinity purified by immobilized gelsolin G4-6. Their correct folding was verified by a number of assays. The mutant actins also displayed a disturbed intrinsic ATPase activity and an altered polymerization behavior in the presence of tropomyosin, gelsolin, and Arp2/3 complex. Both mutants stimulated the cardiac β-myosin ATPase to only 50 % of WT cardiac F-actin. Copolymers of WT and increasing amounts of the mutant actins led to a reduced stimulation of the myosin ATPase. Transfection of established cell lines revealed incorporation of EGFP- and hemagglutinin (HA)-tagged WT and both mutant actins into cytoplasmic stress fibers. Adenoviral vectors of HA-tagged WT and Y166C actin were successfully used to infect adult and neonatal rat cardiomyocytes (NRCs). The expressed HA-tagged actins were incorporated into the minus-ends of NRC thin filaments, demonstrating the ability to form hybrid thin filaments with endogenous actin. In NRCs, the Y166C mutant led after 72 h to a shortening of the sarcomere length when compared to NRCs infected with WT actin. Thus our data demonstrate that a mutant actin can be integrated into cardiomyocyte thin filaments and by its reduced mode of myosin interaction might be the basis for the initiation of HCM.
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Affiliation(s)
- Mirco Müller
- Institute for Biophysical Chemistry, OE 4350, Hannover Medical School, 30625 Hannover, Germany
| | - Antonina Joanna Mazur
- Department of Anatomy and Molecular Embryology, Ruhr-University, Universitätsstrasse 150, 44780 Bochum, Germany
- Present Address: Department of Cell Pathology, Faculty of Biotechnology, University of Wroclaw, 51-148 Wroclaw, Poland
| | - Elmar Behrmann
- Department of Physical Biochemistry, Max-Planck-Institute for Molecular Physiology, 44227 Dortmund, Germany
| | - Ralph P. Diensthuber
- Institute for Biophysical Chemistry, OE 4350, Hannover Medical School, 30625 Hannover, Germany
| | - Michael B. Radke
- Institute for Biophysical Chemistry, OE 4350, Hannover Medical School, 30625 Hannover, Germany
| | - Zheng Qu
- Department of Anatomy and Molecular Embryology, Ruhr-University, Universitätsstrasse 150, 44780 Bochum, Germany
| | - Christoph Littwitz
- Department of Physiology, Stritch School of Medicine, Loyola University Chicago, Chicago, USA
| | - Stefan Raunser
- Department of Physical Biochemistry, Max-Planck-Institute for Molecular Physiology, 44227 Dortmund, Germany
| | - Cora-Ann Schoenenberger
- Maurice E. Müller Institute for Structural Biology, Biozentrum, University of Basel, 4046 Basel, Switzerland
| | - Dietmar J. Manstein
- Institute for Biophysical Chemistry, OE 4350, Hannover Medical School, 30625 Hannover, Germany
| | - Hans Georg Mannherz
- Department of Anatomy and Molecular Embryology, Ruhr-University, Universitätsstrasse 150, 44780 Bochum, Germany
- Department of Physical Biochemistry, Max-Planck-Institute for Molecular Physiology, 44227 Dortmund, Germany
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7
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Li S, Xu X, Zhou G. The roles of the actin-myosin interaction and proteolysis in tenderization during the aging of chicken muscle. Poult Sci 2012; 91:150-60. [DOI: 10.3382/ps.2011-01484] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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8
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Levitsky DI, Pivovarova AV, Mikhailova VV, Nikolaeva OP. Thermal unfolding and aggregation of actin. FEBS J 2008; 275:4280-95. [DOI: 10.1111/j.1742-4658.2008.06569.x] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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9
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Park J, Kim J, Kim MK. Onion flesh and onion peel enhance antioxidant status in aged rats. J Nutr Sci Vitaminol (Tokyo) 2007; 53:21-9. [PMID: 17484375 DOI: 10.3177/jnsv.53.21] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
This study was designed to investigate the effects of dietary onion flesh or onion peel on lipid peroxides and DNA damage in aged rats. Sprague Dawley male rats (n=40, 16 mo old) were blocked into five groups and raised for 3 mo with either an onion-free control diet or onion diets (Allium cepa L., intermediate-day variety) containing either 5% (w/w) powdered dried onion flesh, 5% (w/w) powdered dried onion peel or ethanol extracts of the two powdered forms of onion. Total antioxidant status (TAS) and levels of total polyphenols and quercetin were greatest in onion peel ethanol extract, followed by onion peel powder, onion flesh ethanol extract, and onion flesh powder. Plasma quercetin and isorhamnetin levels were markedly increased by onion peel powder and onion peel ethanol extract. Rats fed onion flesh powder or onion peel powder had a higher plasma TAS than rats fed the control diet. Onion peel powder reduced liver thiobarbituric reactive substances relative to those of the control diet in aged rats (p<0.05). Brain 8-isoprostane levels were markedly decreased by all four onion diets and the decrease was significant for the onion flesh powder and onion peel powder diets (p<0.05). There was no significant decrease in cellular DNA damage in the kidney or brain tissue among rats fed the four onion diets. Onion flesh or onion peel enhanced antioxidant status in aged rats and may be beneficial for the elderly as a means of lowering lipid peroxide levels.
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Affiliation(s)
- Juyeon Park
- Department of Food and Nutritional Sciences, Ewha Women's University, 1-1 Daehyun-dong, Seodaemun-gu, Seoul 120-750, Korea
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10
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Baron R, Willner B, Willner I. Biomolecule–nanoparticle hybrids as functional units for nanobiotechnology. Chem Commun (Camb) 2007:323-32. [PMID: 17220964 DOI: 10.1039/b610721b] [Citation(s) in RCA: 149] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Biomolecule-metal or semiconductor nanoparticle (NP) hybrid systems combine the recognition and catalytic properties of biomolecules with the unique electronic and optical properties of NPs. This enables the application of the hybrid systems in developing new electronic and optical biosensors, to synthesize nanowires and nanocircuits, and to fabricate new devices. Metal NPs are employed as nano-connectors that activate redox enzymes, and they act as electrical or optical labels for biorecognition events. Similarly, semiconductor NPs act as optical probes for biorecognition processes. Double-stranded DNA or protein chains that are modified with metallic nanoclusters act as templates for the synthesis of metallic nanowires. The nanowires are used as building blocks to assemble nano-devices such as a transistor or a nanotransporter.
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Affiliation(s)
- Ronan Baron
- Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, 91904, Israel
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11
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Mátyus L, Szöllosi J, Jenei A. Steady-state fluorescence quenching applications for studying protein structure and dynamics. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2006; 83:223-36. [PMID: 16488620 DOI: 10.1016/j.jphotobiol.2005.12.017] [Citation(s) in RCA: 99] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2005] [Accepted: 12/14/2005] [Indexed: 10/25/2022]
Abstract
Fluorescence quenching methods are useful to obtain information about the conformational and/or dynamic changes of proteins in complex macromolecular systems. In this review steady-state methods are described and the data interpretation is thoroughly discussed. As a special case of fluorescence quenching mechanism, fluorescence resonance energy transfer (FRET) phenomenon is also presented. Application of a FRET based method to characterize the temperature dependence of the flexibility of protein matrix is clearly demonstrated.
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Affiliation(s)
- László Mátyus
- Department of Biophysics and Cell Biology, Research Center for Molecular Medicine, Medical and Health Science Center, University of Debrecen, Nagyerdei krt 98, P.O. Box 39, H-4012 Debrecen, Hungary.
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12
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Korman VL, Anderson SEB, Prochniewicz E, Titus MA, Thomas DD. Structural dynamics of the actin-myosin interface by site-directed spectroscopy. J Mol Biol 2005; 356:1107-17. [PMID: 16406406 DOI: 10.1016/j.jmb.2005.10.024] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2005] [Revised: 10/07/2005] [Accepted: 10/11/2005] [Indexed: 11/19/2022]
Abstract
We have used site-directed spin and fluorescence labeling to test molecular models of the actin-myosin interface. Force is generated when the actin-myosin complex undergoes a transition from a disordered weak-binding state to an ordered strong-binding state. Actomyosin interface models, in which residues are classified as contributing to either weak or strong binding, have been derived by fitting individual crystallographic structures of actin and myosin into actomyosin cryo-EM maps. Our goal is to test these models using site-directed spectroscopic probes on actin and myosin. Starting with Cys-lite constructs of both yeast actin (ActC) and the Dictyostelium myosin II motor domain (S1dC), site-directed labeling (SDL) mutants were generated by mutating residues to Cys in the proposed weak and strong-binding interfaces. This report focuses on the effects of forming the strong-binding complex on four SDL mutants, two located in the proposed weak-binding interface (ActC5 and S1dC619) and two located in the proposed strong-binding interface (ActC345 and S1dC401). Neither the mutations nor labeling prevented strong actomyosin binding or actin-activation of myosin ATPase. Formation of the strong-binding complex resulted in decreased spin and fluorescence probe mobility at all sites, but both myosin-bound probes showed remarkably high mobility even after complex formation. Complex formation decreased solvent accessibility for both actin-bound probes, but increased it for the myosin-bound probes. These results are not consistent with a simple model in which there are discrete weak and strong interfaces, with only the strong interface forming under strong-binding conditions, nor are they consistent with a model in which surface residues become rigid and inaccessible upon complex formation. We conclude that all four of these residues are involved in the strong actin-myosin interface, but this interface is remarkably dynamic, especially on the surface of myosin.
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Affiliation(s)
- Vicci L Korman
- Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA
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13
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Katz E, Willner I. Integrated nanoparticle-biomolecule hybrid systems: synthesis, properties, and applications. Angew Chem Int Ed Engl 2005; 43:6042-108. [PMID: 15538757 DOI: 10.1002/anie.200400651] [Citation(s) in RCA: 1630] [Impact Index Per Article: 85.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Nanomaterials, such as metal or semiconductor nanoparticles and nanorods, exhibit similar dimensions to those of biomolecules, such as proteins (enzymes, antigens, antibodies) or DNA. The integration of nanoparticles, which exhibit unique electronic, photonic, and catalytic properties, with biomaterials, which display unique recognition, catalytic, and inhibition properties, yields novel hybrid nanobiomaterials of synergetic properties and functions. This review describes recent advances in the synthesis of biomolecule-nanoparticle/nanorod hybrid systems and the application of such assemblies in the generation of 2D and 3D ordered structures in solutions and on surfaces. Particular emphasis is directed to the use of biomolecule-nanoparticle (metallic or semiconductive) assemblies for bioanalytical applications and for the fabrication of bioelectronic devices.
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Affiliation(s)
- Eugenii Katz
- Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
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14
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Shepard AA, Dumka D, Akopova I, Talent J, Borejdo J. Simultaneous measurement of rotations of myosin, actin and ADP in a contracting skeletal muscle fiber. J Muscle Res Cell Motil 2005; 25:549-57. [PMID: 15711885 DOI: 10.1007/s10974-004-5073-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2004] [Accepted: 10/06/2004] [Indexed: 10/25/2022]
Abstract
The rotation of myosin heads and actin were measured simultaneously with an indicator of the enzymatic activity of myosin. To minimize complications due to averaging of signals from many molecules, the signal was measured in a small population residing in a femtoliter volume of a muscle fiber. The onset of rotation was synchronized by a sudden release of caged ATP. The orientation of cross-bridges was measured by anisotropy of recombinant fluorescent regulatory light chains exchanged with native regulatory light chains. The orientation of actin was measured by anisotropy of phalloidin added to actin filaments. The enzymatic activity of myosin was measured by dissociation of fluorescent ADP from the active site. The onset of all three events occurred at the same time. This suggests that in contracting muscle, actin does not move independently of myosin and that ATP hydrolysis is strongly coupled to the rotation of cross-bridges.
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Affiliation(s)
- A A Shepard
- Department of Molecular Biology and Immunology, University of North Texas, 3500 Camp Bowie Building, Fort Worth, TX 76107, USA
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15
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Katz E, Willner I. Integrierte Hybridsysteme aus Nanopartikeln und Biomolekülen: Synthese, Eigenschaften und Anwendungen. Angew Chem Int Ed Engl 2004. [DOI: 10.1002/ange.200400651] [Citation(s) in RCA: 256] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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16
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Abstract
The cell is rich with biopolymeric surfaces. Yet, the role of these surfaces and attendant surface-water interfaces has received little attention among biologists, most of whom consider water as a neutral carrier. This review aims to begin bridging the gap between biology and interface science-to show that a surface-oriented approach has power to bring fresh insights into an otherwise impenetrably complex maze. In this approach the cell is treated as a polymer gel. If the cell is a gel, then a logical approach to the understanding of cell function is through an understanding of gel function. Great strides have been made recently in understanding the principles of polymer-gel dynamics, and particularly the role of the polymer-water interface. It has become clear that a central mechanism in biology is the phase-transition-a major structural change prompted by a subtle change of environment. Phase-transitions are capable of doing work and such work could be responsible for much of the work of the cell. Here, we pursue this approach. We set up a polymer-gel-based foundation for cell behavior, and explore the extent to which this foundation explains how the cell achieves its everyday tasks.
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Affiliation(s)
- Gerald H Pollack
- Department of Bioengineering 357962, University of Washington, Seattle, WA 98195, USA.
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17
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Yengo CM, Berger CL. Fluorescence resonance energy transfer in acto-myosin complexes. Results Probl Cell Differ 2002; 36:21-30. [PMID: 11892281 DOI: 10.1007/978-3-540-46558-4_3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
Affiliation(s)
- Christopher M Yengo
- Department of Molecular Physiology and Biophysics, University of Vermont College of Medicine, Burlington, Vermont 05405-0068, USA
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18
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Affiliation(s)
- Timothy C Doyle
- Xenogen Corporation, 860 Atlantic Avenue, Alameda, California 94501, USA
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19
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20
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Miki M. Structural changes between regulatory proteins and actin: a regulation model by tropomyosin-troponin based on FRET measurements. Results Probl Cell Differ 2002; 36:191-203. [PMID: 11892280 DOI: 10.1007/978-3-540-46558-4_14] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
Affiliation(s)
- Masao Miki
- Department of Applied Chemistry and Biotechnology, Fukui University, 3-9-1 Bunkyo, Fukui-Shi 910-8507, Japan
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21
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Abstract
That the cell is a gel is broadly acknowledged. Textbooks begin with this assertion-and then proceed with great abandon to derive mechanisms based on free diffusion, as though the gel concept were groundless and cell was an aqueous solution. This disconnect emerges in part because the behavior of gels is not well understood, particularly among most biologists. Recently, great strides have been made in the understanding of gel behavior. It has become clear, for example, that a central mechanism in gel function is the phase-transition-a qualitative structural change prompted by a subtle change of environment, not unlike the transition from ice to water. Phase-transitions are capable of doing work. If the cell is a gel, then a logical approach to understanding cell function is to understand gel function-especially whether some role may be played by the phase-transition. Here we pursue this approach. We first consider the dichotomy of the cell as a gel and the cell as an aqueous solution. We then set up a gel-based foundation for cell behavior, in which the gels' physical chemical features are used to explore how the cell achieves its everyday tasks. If there is a common underlying mechanism of cell function, it appears that the polymer gel phase-transition could well be a candidate.
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Affiliation(s)
- G H Pollack
- Department of Bioengineering 357962, University of Washington, Seattle, WA 98195, USA.
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22
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Affiliation(s)
- H Strzelecka-Gołaszewska
- Department of Muscle Biochemistry, Nencki Institute of Experimental Biology, 3 Pasteur Street, 02-093 Warsaw, Poland
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23
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Moens PD, dos Remedios CG. Analysis of models of F-actin using fluorescence resonance energy transfer spectroscopy. Results Probl Cell Differ 2001; 32:59-77. [PMID: 11131837 DOI: 10.1007/978-3-540-46560-7_5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- P D Moens
- Muscle Research Unit, Department of Anatomy and Histology, Institute for Biomedical Research, University of Sydney, Sydney 2006, Australia
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24
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The relationship between tenderness, proteolysis, muscle contraction and dissociation of actomyosin. Meat Sci 2001; 57:1-12. [DOI: 10.1016/s0309-1740(00)00065-6] [Citation(s) in RCA: 83] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2000] [Revised: 05/22/2000] [Accepted: 05/22/2000] [Indexed: 11/18/2022]
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25
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Yengo CM, Chrin LR, Berger CL. Interaction of myosin LYS-553 with the C-terminus and DNase I-binding loop of actin examined by fluorescence resonance energy transfer. J Struct Biol 2000; 131:187-96. [PMID: 11052891 DOI: 10.1006/jsbi.2000.4296] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Fluorescence resonance energy transfer (FRET) experiments were carried out in the absence of nucleotide (rigor) or in the presence of MgADP between fluorescent donor probes (IAEDANS (5((((2-iodoacetyl)amino)ethyl)amino)-naphthalene-1-sulfonic acid) at Cys-374 or DANSYL (5-dimethylamino naphthalene-1-(N-(5-aminopentyl))sulfonamide) at Gln-41 of actin and acceptor molecules (FHS (6-[fluorescein-5(and 6)-carboxamido] hexanoic acid succinimidyl ester) at Lys-553 of skeletal muscle myosin subfragment 1. The critical Förster distance (R(0)) was determined to be 44 and 38 A for the IAEDANS-FHS and DANSYL-FHS donor-acceptor pairs, respectively. The efficiency of energy transfer between the acceptor molecules at Lys-553 of myosin and donor probes at Cys-374 or Gln-41 of actin was calculated to be 0.78 +/- 0.01 or 0.94 +/- 0.01, respectively, corresponding to distances of 35.6 +/- 0.4 A and 24.0 +/- 1.6 A, respectively. MgADP had no significant effect on the distances observed in rigor. Thus, rearrangements in the acto-myosin interface are likely to occur elsewhere than in the lower 50-kDa subdomain of myosin as its affinity for actin is weakened by MgADP binding.
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Affiliation(s)
- C M Yengo
- Department of Molecular Physiology and Biophysics, University of Vermont College of Medicine, Burlington, Vermont 05405-0068, USA
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Borovikov YS, Moraczewska J, Khoroshev MI, Strzelecka-Gołaszewska H. Proteolytic cleavage of actin within the DNase-I-binding loop changes the conformation of F-actin and its sensitivity to myosin binding. BIOCHIMICA ET BIOPHYSICA ACTA 2000; 1478:138-51. [PMID: 10719182 DOI: 10.1016/s0167-4838(00)00005-4] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
Effects of subtilisin cleavage of actin between residues 47 and 48 on the conformation of F-actin and on its changes occurring upon binding of myosin subfragment-1 (S1) were investigated by measuring polarized fluorescence from rhodamine-phalloidin- or 1, 5-IAEDANS-labeled actin filaments reconstructed from intact or subtilisin-cleaved actin in myosin-free muscle fibers (ghost fibers). In separate experiments, polarized fluorescence from 1, 5-IAEDANS-labeled S1 bound to non-labeled actin filaments in ghost fibers was measured. The measurements revealed differences between the filaments of cleaved and intact actin in the orientation of rhodamine probe on the rhodamine-phalloidin-labeled filaments, orientation and mobility of the C-terminus of actin, filament flexibility, and orientation and mobility of the myosin heads bound to F-actin. The changes in the filament flexibility and orientation of the actin-bound fluorophores produced by S1 binding to actin in the absence of ATP were substantially diminished by subtilisin cleavage of actin. The results suggest that loop 38-52 plays an important role, not only in maintaining the F-actin structure, but also in the conformational transitions in actin accompanying the strong binding of the myosin heads that may be essential for the generation of force and movement during actin-myosin interaction.
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Affiliation(s)
- Y S Borovikov
- Laboratory of Mechanisms of Cell Motility, Institute of Cytology, Russian Academy of Sciences, 4 Tikhoretsky Avenue, St. Petersburg, Russia.
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27
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Hodgkinson JL. Actin and the smooth muscle regulatory proteins: a structural perspective. J Muscle Res Cell Motil 2000; 21:115-30. [PMID: 10961836 DOI: 10.1023/a:1005697301043] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
The structural details of the smooth muscle acto-myosin interaction and its functional implications have been much discussed in recent years, however other, smooth muscle specific, actin-binding proteins have received much less attention. With increasing technical advances in structural biology a great deal of structural information is now coming to light, information that can provide useful insight into the mechanism of action for many important nonmotor actin-binding proteins. The purpose of the review is to instill the current knowledge on the structure, and interaction sites on F-actin, of the major, non-motor actin-binding proteins from smooth muscle, proposed to have a role in regulation. In the light of the recent structural studies the probable roles of the various actin-binding proteins will be discussed with particular reference to structure function relationships.
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Affiliation(s)
- J L Hodgkinson
- Imperial College of Science Technology and Medicine at The National Heart and Lung Institute, London, UK
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28
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29
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Vale RD. Millennial musings on molecular motors. Trends Genet 1999. [DOI: 10.1016/s0168-9525(99)01886-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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31
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Kekic M, dos Remedios CG. Electrophoretic monitoring of pollutants: effect of cations and organic compounds on protein interactions monitored by native gel electrophoresis. Electrophoresis 1999; 20:2053-8. [PMID: 10451114 DOI: 10.1002/(sici)1522-2683(19990701)20:10<2053::aid-elps2053>3.0.co;2-s] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
We describe how the interaction between actin and its protein ligands can be used to evaluate the presence of certain metal (Cd, Cu, Hg, Zn) ions and organic compounds (2,4-dioxin or Picloram) which are common components of environmental pollution. The assay detects the high-affinity binding of actin to actin-binding proteins (ABPs), cofilin or DNase I. The actin-ABP complex was analyzed using native polyacrylamide gel electrophoresis and quantified by scanning densitometry. These proteins are widely distributed in animals and plant cells. The assay involves allowing the proteins to form an actin-ABP complex into which increasing amounts of pollutants are titrated. Thus, the assay directly tests for inhibition of protein-protein interaction. It is sensitive to common pollutants using concentration ranges over which they are known to exert a biological toxicity. A convenient feature of the assay is the fact that all the proteins can be stored in freeze-dried form, and can be purchased commercially. We suggest that if this molecular assay is sensitive to a wide range of environmental pollutants, it could be used as a rapid and convenient assay of the environment in combination with currently available tests.
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Affiliation(s)
- M Kekic
- Department of Anatomy and Histology, Institute for Biomedical Research, The University of Sydney, Australia
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32
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Borovikov YS. Conformational changes of contractile proteins and their role in muscle contraction. INTERNATIONAL REVIEW OF CYTOLOGY 1999; 189:267-301. [PMID: 10333581 DOI: 10.1016/s0074-7696(08)61389-3] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The review summarizes the results of studies on conformational changes in contractile proteins that occur during muscle contraction. Polarized fluorescence of tryptophan residues in actin and of fluorescent probes bound specifically to different sites on actin, myosin, or tropomyosin in muscle fibers was measured. The results show that the transition of actomyosin complex from the weak to the strong-binding state is accompanied by a change in the orientation of F-actin subunits with the C and N termini moving opposite to a large part of the subunit. Myosin light chains and some areas in the 20-kDa domain of myosin head move in the same direction as the C- and N-terminal regions of actin. It is established that troponin, caldesmon, calponin, and myosin systems of regulation of muscle contraction modify intramolecular actomyosin rearrangements in a Ca(2+)-dependent manner. The role of intramolecular movements of contractile proteins in muscle contraction is discussed.
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Affiliation(s)
- Y S Borovikov
- Laboratory of Molecular Basis of Cell Motility, Russian Academy of Sciences, St. Petersburg, Russia
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33
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IKENO A, HASHIMOTO K, SHIMIZU M, TERAO J, KUMAZAWA S, NAKAYAMA T. Absorption and Metabolism of Quercetin in Caco-2 Cells. FOOD SCIENCE AND TECHNOLOGY RESEARCH 1999. [DOI: 10.3136/fstr.5.90] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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34
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Bing W, Razzaq A, Sparrow J, Marston S. Tropomyosin and troponin regulation of wild type and E93K mutant actin filaments from Drosophila flight muscle. Charge reversal on actin changes actin-tropomyosin from on to off state. J Biol Chem 1998; 273:15016-21. [PMID: 9614109 DOI: 10.1074/jbc.273.24.15016] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
In the Drosophila flight muscle actin mutant E93K there is a charge reversal on the surface of actin close to the proposed position of tropomyosin when it is in the off state. Using a quantitative in vitro motility assay we have found that the wild type Drosophila ACT88F actin behaved like rabbit skeletal muscle actin when tropomyosin and troponin were added at pCa5 and pCa9. In contrast the effect of tropomyosin upon the E93K mutant actin filament movement was completely different from wild type and resembled the response of wild type with tropomyosin+troponin at pCa9 (i.e. the filaments were switched off). Velocity of E93K actin did not increase, and the fraction of filaments motile was reduced to less than 15% by adding up to 30 nM tropomyosin. When myosin subfragment-1 modified by N-ethylmaleimide was mixed with mutant E93K actin-tropomyosin filaments we observed that it restored motility of the filaments to the level observed with E93K actin alone. We conclude that electrostatic charge on the surface of domain 2 of actin plays a critical role in determining the state of actin-tropomyosin that is a central feature of the steric blocking mechanism of actin filament regulation.
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Affiliation(s)
- W Bing
- Imperial College School of Medicine, National Heart and Lung Institute, Dovehouse Street, London SW3 6LY, United Kingdom
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35
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Berger W, Micksche M, Elbling L. Effects of multidrug resistance-related ATP-binding-cassette transporter proteins on the cytoskeletal activity of cytochalasins. Exp Cell Res 1997; 237:307-17. [PMID: 9434626 DOI: 10.1006/excr.1997.3798] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Cytochalasins are microfilament-active mould metabolites, widely utilized to study the involvement of the actin cytoskeleton in cellular processes as well as in genotoxicity and cell kinetic research. In this study we have investigated whether multidrug-resistance phenotypes, caused by overexpression of the ATP-binding-cassette transporter proteins P-glycoprotein (P-gp) or multidrug-resistance-associated protein (MRP), influence the microfilament-depolymerizing effect of cytochalasins. Using four well-characterized multidrug-resistance cell models, we have shown that both the microfilament-disrupting (phalloidine staining) and the cytotoxic (MTT-assay) activity of cytochalasins are reduced in parallel with increased P-gp expression and restorable by P-gp-modulating agents. This also applied to the cytochalasin D-mediated induction of polykaryons (microscopic evaluation) which arise as a consequence of impaired cytokinesis but unaffected karyokinesis. The reduced cellular activity of cytochalasins in P-gp-positive cell lines was correlated with decreased intracellular accumulation ([3H]cytochalasin B accumulation) which was also restorable by P-gp modulators. Moreover, the dose-dependent inhibition of P-gp photoaffinity labeling ([3H]-azidopine) suggested cytochalasins as P-gp-binding agents. In contrast, MRP overexpression had no effect on either cytochalasin microfilament activity or cytotoxicity. In conclusion, data indicate that the microfilament-destructive effects of cytochalasins are impaired due to a reduction of the intracellular cytochalasin accumulation by P-gp but not by MRP. Results are discussed with regard to P-gp as a resistance factor when cytochalasins are utilized to study microfilament dynamics, cell cycle kinetics or chromosomal damage. Moreover, the polykaryon-inducing activity of cytochalasin D is suggested as a specific indicator for a P-gp-mediated multidrug-resistance phenotype and the reversing potency of chemosensitizers.
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Affiliation(s)
- W Berger
- Department of Applied and Experimental Oncology, Vienna University, Austria.
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Ishiwata S, Miki M, Shin I, Funatsu T, Yasuda K, dos Remedios CG. Interhead distances in myosin attached to F-actin estimated by fluorescence energy transfer spectroscopy. Biophys J 1997; 73:895-904. [PMID: 9251806 PMCID: PMC1180986 DOI: 10.1016/s0006-3495(97)78122-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
Fluorescence resonance energy transfer (FRET) spectroscopy has been used to determine distances between probes attached to the most reactive sulfhydryl (SH1) group on individual myosin "heads." We measured intramolecular and intermolecular interhead distances as well as the distance between one head of heavy meromyosin (HMM) mixed with subfragment-1 (S1) heads attached to F-actin under rigor conditions. The SH1 cysteine was specifically labeled with either a donor (5-((((2-iodoacetyl)amino)ethyl)amino)naphthalene-1-sulfonic acid) or an acceptor probe (5-iodoacetamidofluorescein). In free solution, the distance between these probes was too large to allow significant FRET, but in the rigor complex with F-actin, intermolecular interhead distances between S1 molecules, HMM molecules, or S1 and HMM were determined to be 6.0-6.3 nm. The radial coordinate of the labels relative to F-actin was 5.0-6.4 nm. However, the intramolecular interhead distance in HMMs in which the two heads were labeled with D and A probes was estimated to be larger. The binding affinity of the second head of HMM(D/A) to F-actin may be reduced because of heterogeneous modification of the SH1 groups, such that the probability of single-head binding is increased.
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Affiliation(s)
- S Ishiwata
- Department of Physics, School of Science and Engineering, Waseda-University, Japan.
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37
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Abstract
Kinesin and myosin are motor proteins that share a common structural core and bind to microtubules and actin filaments, respectively. While the actomyosin interface has been well studied, the location of the microtubule-binding site on kinesin has not been identified. Using alanine-scanning mutagenesis, we have found that microtubule-interacting kinesin residues are located in three loops that cluster in a patch on the motor surface. The critical residues are primarily positively charged, which is consistent with a primarily electrostatic interaction with the negatively charged tubulin molecule. The core of the microtubule-binding interface resides in a highly conserved loop and helix (L12/alpha5) that corresponds topologically to the major actin-binding domain of myosin. Thus, kinesin and myosin have developed distinct polymer-binding domains in a similar region with respect to their common catalytic cores.
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Affiliation(s)
- G Woehlke
- Howard Hughes Medical Institute, Department of Pharmacology, University of California, San Francisco, 94143, USA
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Hild G, Nyitrai M, Gharavi R, Somogyi B, Belágyi J. Fluorescence quenching of the tryptophan emission from the F- and G-forms of actin. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY. B, BIOLOGY 1996; 35:175-9. [PMID: 8933724 DOI: 10.1016/s1011-1344(96)07319-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
The parameters characterizing the quenching of fluorescence emitted by the four tryptophans of actin were measured by time resolved techniques in the monomeric (G) and the polymerized (F) forms of the protein. Acrylamide as a neutral and cesium ions as positively charged quenchers were used to characterize the subdomain 1, which contains all the four tryptophan residues. Use of acrylamide did not reveal any difference between the G- and F-forms, cesium, however, did so. The value of the quenching rate constant, k+, is significantly higher for the F-form than that for the G-form. This difference is present independently of the model (discrete or continuous lifetime distribution) used to process the data. These results are compatible with the conclusion that the charge distribution of the microenvironment around at least one of the four tryptophans is changed. This means that this region becomes more attracted to the cesium ion as a result of transition from the G- to the F-form.
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Affiliation(s)
- G Hild
- Department of Biophysics, Medical University School of Pécs, Hungary
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Moraczewska J, Strzelecka-Gołaszewska H, Moens PD, dos Remedios CG. Structural changes in subdomain 2 of G-actin observed by fluorescence spectroscopy. Biochem J 1996; 317 ( Pt 2):605-11. [PMID: 8713092 PMCID: PMC1217529 DOI: 10.1042/bj3170605] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The influence of DNase I binding to Ca-ATP-G-actin and of Ca2+/Mg2+ and ATP/ADP exchange on the conformation of G-actin were investigated by measuring the fluorescence of dansyl cadaverine (DC) conjugated to Gln41 in subdomain 2 of the protein. Fluorescence resonance energy transfer (FRET) between this probe and N-[4-(dimethylamino)-3,5-dinitrophenyl]maleimide (DDPM) attached to Cys374 in subdomain 1 was also measured. Contrary to an earlier report [dos Remedios, Kiessling and Hambly (1994) in Synchrotron Radiation in the Biosciences (Chance, B., Deisenhofer, J., Ebashi, S., Goodhead, D. T., Helliwell, J. R., Huxley, H. E., Iizuka, T., Kirz, J., Mitsui, T., Rubenstein, E. et al., eds.), pp. 418-425, Oxford University Press, Oxford], the distance between these probes did not change significantly when DNase I was bound to actin. A small but reproducible increase in the quantum yield and a blue shift of the DC fluorescence maximum were observed when bound Ca2+ was replaced by Mg2+. A large increase (about 70%) in the quantum yield and an approx. 12 nm blue shift of the emission spectrum occurred when ATP in Mg-G-actin was replaced by ADP. These changes were not accompanied by any significant change in the FRET distance between the dansyl donor and DDPM acceptor probes. A substantial change in the fluorescence of DC-actin was observed after proteolytic removal of the last three residues of actin, in accordance with earlier evidence suggesting that there is a conformational coupling between subdomain 2 and the C-terminal segment in subdomain 1 of actin. The results are discussed in relation to recently published data obtained with another fluorescent probe and to earlier observations based on limited cleavage using proteolytic enzymes.
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Affiliation(s)
- J Moraczewska
- Department of Anatomy and Histology, University of Sydney, Australia
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