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Ishikawa A, Kebukawa Y, Kobayashi K, Yoda I. Gamma-Ray-Induced Amino Acid Formation during Aqueous Alteration in Small Bodies: The Effects of Compositions of Starting Solutions. Life (Basel) 2024; 14:103. [PMID: 38255718 PMCID: PMC10817335 DOI: 10.3390/life14010103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Revised: 12/22/2023] [Accepted: 12/29/2023] [Indexed: 01/24/2024] Open
Abstract
Organic compounds, such as amino acids, are essential for the origin of life, and they may have been delivered to the prebiotic Earth from extra-terrestrial sources, such as carbonaceous chondrites. In the parent bodies of carbonaceous chondrites, the radioactive decays of short-lived radionuclides, such as 26Al, cause the melting of ice, and aqueous alteration occurs in the early stages of solar system formation. Many experimental studies have shown that complex organic matter, including amino acids and high-molecular-weight organic compounds, is produced by such hydrothermal processes. On the other hand, radiation, particularly gamma rays from radionuclides, can contribute to the formation of amino acids from simple molecules such as formaldehyde and ammonia. In this study, we investigated the details of gamma-ray-induced amino acid formation, focusing on the effects of different starting materials on aqueous solutions of formaldehyde, ammonia, methanol, and glycolaldehyde with various compositions, as well as hexamethylenetetramine. Alanine and glycine were the most abundantly formed amino acids after acid hydrolysis of gamma-ray-irradiated products. Amino acid formation increased with increasing gamma-ray irradiation doses. Lower amounts of ammonia relative to formaldehyde produced more amino acids. Glycolaldehyde significantly increased amino acid yields. Our results indicated that glycolaldehyde formation from formaldehyde enhanced by gamma rays is key for the subsequent production of amino acids.
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Affiliation(s)
- Akari Ishikawa
- Department of Chemistry and Life Science, Yokohama National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan (K.K.)
| | - Yoko Kebukawa
- Department of Chemistry and Life Science, Yokohama National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan (K.K.)
- Department of Earth and Planetary Sciences, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8551, Japan
| | - Kensei Kobayashi
- Department of Chemistry and Life Science, Yokohama National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan (K.K.)
- Department of Earth and Planetary Sciences, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8551, Japan
| | - Isao Yoda
- Co60 Irradiation Facility, Laboratory for Zero-Carbon Energy, Institute of Innovative Research, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan
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Wallace ML, Tallarida N, Schubert WW, Lambert J. Life Detection on Icy Moons Using Flow Cytometry and Exogenous Fluorescent Stains. ASTROBIOLOGY 2023; 23:1071-1082. [PMID: 37672625 DOI: 10.1089/ast.2023.0016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/08/2023]
Abstract
Flow cytometry is a potential technology for in situ life detection on icy moons (such as Enceladus and Europa) and on the polar ice caps of Mars. We developed a method for using flow cytometry to positively identify four classes of biomarkers using exogenous fluorescent stains: nucleic acids, proteins, carbohydrates, and lipids. We demonstrated the effectiveness of exogenous stains with six known organisms and known abiotic material and showed that the cytometer is easily able to distinguish between the known organisms and the known abiotic material using the exogenous stains. To simulate a life-detection experiment on an icy world lander, we used six natural samples with unknown biotic and abiotic content. We showed that flow cytometry can identify all four biomarkers using the exogenous stains and can separate the biotic material from the known abiotic material on scatter plots. Exogenous staining techniques would likely be used in conjunction with intrinsic fluorescence, clustering, and sorting for a more complete and capable life-detection instrument on an icy moon lander.
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Affiliation(s)
- Matthew L Wallace
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Nicholas Tallarida
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Wayne W Schubert
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - James Lambert
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
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Kebukawa Y, Asano S, Tani A, Yoda I, Kobayashi K. Gamma-Ray-Induced Amino Acid Formation in Aqueous Small Bodies in the Early Solar System. ACS CENTRAL SCIENCE 2022; 8:1664-1671. [PMID: 36589881 PMCID: PMC9801502 DOI: 10.1021/acscentsci.2c00588] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Indexed: 06/01/2023]
Abstract
Carbonaceous chondrites contain life's essential building blocks, including amino acids, and their delivery of organic compounds would have played a key role in life's emergence on Earth. Aqueous alteration of carbonaceous chondrites is a widespread process induced by the heat produced by radioactive decay of nuclides like 26Al. Simple ubiquitous molecules like formaldehyde and ammonia could produce various organic compounds, including amino acids and complex organic macromolecules. However, the effects of radiation on such organic chemistry are unknown. Hence, the effects of gamma rays from radioactive decays on the formation of amino acids in meteorite parent bodies are demonstrated here. We discovered that gamma-ray irradiation of aqueous formaldehyde and ammonia solutions afforded a variety of amino acids. The amino acid yields had a linear relationship with the total gamma-ray dose but were unaffected by the irradiation dose rates. Given the gamma-ray production rates in the meteorite parent bodies, we estimated that the production rates were reasonable compared to amino acid abundances in carbonaceous chondrites. Our findings indicate that gamma rays may contribute to amino acid formation in parent bodies during aqueous alteration. In this paper, we propose a new prebiotic amino acid formation pathway that contributes to life's origin.
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Affiliation(s)
- Yoko Kebukawa
- Department
of Chemistry and Life Science, Yokohama
National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama, Kanagawa240-8501, Japan
| | - Shinya Asano
- Department
of Chemistry and Life Science, Yokohama
National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama, Kanagawa240-8501, Japan
| | - Atsushi Tani
- Graduate
School of Human Development and Environment, Kobe University, 3-11
Tsurukabuto, Nada-ku, Kobe, Hyogo657-8501, Japan
| | - Isao Yoda
- Co60
irradiation facility, Laboratory for Zero-Carbon Energy, Institute
of Innovative Research, Tokyo Institute
of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo, 152-8550, Japan
| | - Kensei Kobayashi
- Department
of Chemistry and Life Science, Yokohama
National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama, Kanagawa240-8501, Japan
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Kobayashi K, Mita H, Kebukawa Y, Nakagawa K, Kaneko T, Obayashi Y, Sato T, Yokoo T, Minematsu S, Fukuda H, Oguri Y, Yoda I, Yoshida S, Kanda K, Imai E, Yano H, Hashimoto H, Yokobori SI, Yamagishi A. Space Exposure of Amino Acids and Their Precursors during the Tanpopo Mission. ASTROBIOLOGY 2021; 21:1479-1493. [PMID: 34793260 DOI: 10.1089/ast.2021.0027] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Amino acids have been detected in extraterrestrial bodies such as carbonaceous chondrites (CCs), which suggests that extraterrestrial organics could be the source of the first life on Earth, and interplanetary dust particles (IDPs) or micrometeorites (MMs) are promising carriers of extraterrestrial organic carbon. Some amino acids found in CCs are amino acid precursors, but these have not been well characterized. The Tanpopo mission was conducted in Earth orbit from 2015 to 2019, and the stability of glycine (Gly), hydantoin (Hyd), isovaline (Ival), 5-ethyl-5-methylhydantoin (EMHyd), and complex organics formed by proton irradiation from CO, NH3, and H2O (CAW) in space were analyzed by high-performance liquid chromatography and/or gas chromatography/mass spectrometry. The target substances showed a logarithmic decomposition over 1-3 years upon space exposure. Recoveries of Gly and CAW were higher than those of Hyd, Ival, and EMHyd. Ground simulation experiments showed different results: Hyd was more stable than Gly. Solar ultraviolet light was fatal to all organics, and they required protection when carried by IDPs/MMs. Thus, complex amino acid precursors (such as CAW) were possibly more robust than simple precursors during transportation to primitive Earth. The Tanpopo 2 mission is currently being conducted to expose organics to more probable space conditions.
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Affiliation(s)
- Kensei Kobayashi
- Department of Chemistry, Yokohama National University, Hodogaya-ku, Yokohama, Japan
| | - Hajime Mita
- Department of Life, Environment and Applied Chemistry, Faculty of Engineering, Higashi-ku, Fukuoka Institute of Technology, Fukuoka, Japan
| | - Yoko Kebukawa
- Department of Chemistry, Yokohama National University, Hodogaya-ku, Yokohama, Japan
| | - Kazumichi Nakagawa
- The Institute of Scientific and Industrial Research, Osaka University, Ibaraki, Osaka, Japan
| | - Takeo Kaneko
- Department of Chemistry, Yokohama National University, Hodogaya-ku, Yokohama, Japan
| | - Yumiko Obayashi
- Department of Chemistry, Yokohama National University, Hodogaya-ku, Yokohama, Japan
| | - Tomohito Sato
- Department of Chemistry, Yokohama National University, Hodogaya-ku, Yokohama, Japan
| | - Takuya Yokoo
- Department of Chemistry, Yokohama National University, Hodogaya-ku, Yokohama, Japan
| | - Saaya Minematsu
- Department of Life, Environment and Applied Chemistry, Faculty of Engineering, Higashi-ku, Fukuoka Institute of Technology, Fukuoka, Japan
| | | | | | - Isao Yoda
- Tokyo Institute of Technology, Meguro-ku, Tokyo, Japan
| | - Satoshi Yoshida
- National Institute for Quantum and Radiological Science and Technology, Inage-ku, Chiba, Japan
| | - Kazuhiro Kanda
- University of Hyogo, Kamigori-cho, Ako-gun, Hyogo, Japan
| | - Eiichi Imai
- Department of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata, Japan
| | - Hajime Yano
- Institute of Space and Astronautical Science, Japan Aerospace Exploration Agency (ISAS/JAXA), Sagamihara, Kanagawa, Japan
| | - Hirofumi Hashimoto
- Institute of Space and Astronautical Science, Japan Aerospace Exploration Agency (ISAS/JAXA), Sagamihara, Kanagawa, Japan
| | - Shin-Ichi Yokobori
- School of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Hachioji, Tokyo, Japan
| | - Akihiko Yamagishi
- Institute of Space and Astronautical Science, Japan Aerospace Exploration Agency (ISAS/JAXA), Sagamihara, Kanagawa, Japan
- School of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Hachioji, Tokyo, Japan
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5
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Yamagishi A, Yokobori SI, Kobayashi K, Mita H, Yabuta H, Tabata M, Higashide M, Yano H. Scientific Targets of Tanpopo: Astrobiology Exposure and Micrometeoroid Capture Experiments at the Japanese Experiment Module Exposed Facility of the International Space Station. ASTROBIOLOGY 2021; 21:1451-1460. [PMID: 34449275 DOI: 10.1089/ast.2020.2426] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
The Tanpopo experiment was the first Japanese astrobiology mission on board the Japanese Experiment Module Exposed Facility on the International Space Station (ISS). The experiments were designed to address two important astrobiological topics, panspermia and the chemical evolution process toward the generation of life. These experiments also tested low-density aerogel and monitored the microdebris environment around low Earth orbit. The following six subthemes were identified to address these goals: (1) Capture of microbes in space: Estimation of the upper limit of microbe density in low Earth orbit; (2) Exposure of microbes in space: Estimation of the survival time course of microbes in the space environment; (3) Capture of cosmic dust on the ISS and analysis of organics: Detection of the possible presence of organic compounds in cosmic dust; (4) Alteration of organic compounds in space environments: Evaluation of decomposition time courses of organic compounds in space; (5) Space verification of the Tanpopo hyper-low-density aerogel: Durability and particle-capturing capability of aerogel; (6) Monitoring of the number of space debris: Time-dependent change in space debris environment. Subthemes 1 and 2 address the panspermia hypothesis, whereas 3 and 4 address the chemical evolution. The last two subthemes contribute to space technology development. Some of the results have been published previously or are included in this issue. This article summarizes the current status of the Tanpopo experiments.
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Affiliation(s)
- Akihiko Yamagishi
- School of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Hachioji, Tokyo, Japan
- Institute of Space and Astronautical Science, Japan Aerospace Exploration Agency (JAXA), Sagamihara, Kanagawa, Japan
| | - Shin-Ichi Yokobori
- School of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Hachioji, Tokyo, Japan
| | - Kensei Kobayashi
- Department of Chemistry, Yokohama National University, Hodogayaku, Yokohama, Japan
| | - Hajime Mita
- Department of Life, Environment and Applied Chemistry, Faculty of Engineering, Fukuoka Institute of Technology, Higashiku, Fukuoka, Japan
| | - Hikaru Yabuta
- Department of Earth and Planetary Systems Science, Hiroshima University, Hiroshima, Japan
| | - Makoto Tabata
- Department of Physics, Chiba University, Chiba, Japan
| | - Masumi Higashide
- Research and Development Directorate, Japan Aerospace Exploration Agency, Chofu, Tokyo, Japan
| | - Hajime Yano
- Institute of Space and Astronautical Science, Japan Aerospace Exploration Agency (JAXA), Sagamihara, Kanagawa, Japan
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Arathala P, Musah RA. Catalytic effect of water and formic acid on the reaction of carbonyl sulfide with dimethyl amine under tropospheric conditions. Phys Chem Chem Phys 2021; 23:8752-8766. [PMID: 33876034 DOI: 10.1039/d1cp00180a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
CCSD(T)/aug-cc-pVTZ//M06-2X/aug-cc-pVTZ calculations were performed on the addition of amines [i.e. ammonia (NH3), methyl amine (MA), and dimethyl amine (DMA)] to carbonyl sulfide (OCS), followed by transfer of the amine H-atom to either the S-atom or O-atom of OCS, assisted by a single water (H2O) or a formic acid (FA) molecule, leading to the formation of the corresponding carbamothioic S- or O acids. For the OCS + NH3 and OCS + MA reactions with or without the H2O or FA, very high barriers were observed, making these reactions unfeasible. Interestingly, the barrier heights for the OCS + DMA reaction, involving H-atom transfer to either the S-atom or O-atom of OCS and assisted by a FA, were found to be -4.2 kcal mol-1 and -3.9 kcal mol-1, respectively, relative to those of the separated reactants. The barrier height values suggest that FA lowers the reaction barriers by ∼28.4 kcal mol-1 and ∼35.9 kcal mol-1 compared to the OCS + DMA reaction without the catalyst. Rate coefficient calculations were performed on the OCS + DMA reaction both without a catalyst, and assisted by a H2O and a FA molecule using canonical variational transition state theory and small curvature tunneling at the temperatures between 200 and 300 K. The rate data show that the OCS + DMA + FA reaction proceeds through H-atom transfer to the S-atom of OCS, which was found to be ∼103-1011 and 103-1010 times faster than the OCS + DMA and OCS + DMA + H2O reactions, respectively, in the studied temperature range. For the same temperature range, the rate of the OCS + DMA + FA reaction was found to be ∼108-1016 and 103-1012 times faster than the OCS + DMA and OCS + DMA + H2O reactions in which H-atom transfer to the O-atom of OCS occurred. This suggests that the OCS + DMA reaction that is assisted by FA is more efficient than the H2O assisted reaction. In addition, the rate of the OCS + DMA + FA reaction was found to be ∼1010 times slower than the OCS + ˙OH reaction at 298 K. This clarifies that the OCS + DMA + FA reaction may be feasible for the atmospheric removal of OCS under night-time forest fire conditions when the OCS and DMA concentrations are high and the ˙OH concentration is low.
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Affiliation(s)
- Parandaman Arathala
- University at Albany-State University of New York, Department of Chemistry, 1400 Washington Avenue, Albany, NY 12222, USA.
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7
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Materese CK, Gerakines PA, Hudson RL. Laboratory Studies of Astronomical Ices: Reaction Chemistry and Spectroscopy. Acc Chem Res 2021; 54:280-290. [PMID: 33381961 DOI: 10.1021/acs.accounts.0c00637] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
ConspectusScientists have had evidence for molecules in both comets and interstellar space since the 19th and early 20th centuries. Since then, extraterrestrial molecules ranging from simple diatomics to C70 to amino acids have been detected and identified through remote spectroscopy, spacecraft, and sample return missions. These achievements have been made through the efforts of astronomers and laboratory chemists collaborating to identify molecules in a myriad of exotic environments. It is now understood that even in the coldest depths of dense molecular clouds there is a wealth of chemistry to explore, much of it driven by exposure to radiation. As molecular clouds condense to protostellar disks and eventually form new planetary systems, chemical processes continue and evolve. An understanding of these processes is paramount for explaining the compositions of different bodies in our Solar System and may provide insight into the origins of life.In this Account, we describe the work of the Cosmic Ice Laboratory at NASA's Goddard Space Flight Center to characterize the composition of and understand the chemistry occurring in icy bodies in the Solar System and beyond. Our work has touched on a wide range of extraterrestrial environments, including icy interstellar grains, small bodies such as comets and asteroids, and planets and moons. We are especially interested in the chemical and physical changes that occur in ices as a result of thermal changes or exposure to radiation. To this end, we conduct experiments designed to simulate cold extraterrestrial environments and measure physical properties of single- and multicomponent ices. We expose ices to radiation (e.g., MeV protons or keV-MeV electrons) or high-energy (e.g., UV) photons to initiate physical and chemical changes. We conduct experiments using cryo-vacuum chambers equipped with analytical tools and radiation sources to make most of our measurements, including the collection of all spectroscopic data, in situ. When possible and appropriate, we also collect reaction products for further ex situ analysis. The work of the Cosmic Ice Lab provides critical data to astrochemists and others seeking to understand observations, make predictions, and plan future space missions.
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Affiliation(s)
- Christopher K. Materese
- Astrochemistry Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
| | - Perry A. Gerakines
- Astrochemistry Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
| | - Reggie L. Hudson
- Astrochemistry Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
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Esmaili S, Bass AD, Cloutier P, Sanche L, Huels MA. Glycine formation in CO 2:CH 4:NH 3 ices induced by 0-70 eV electrons. J Chem Phys 2018; 148:164702. [PMID: 29716196 DOI: 10.1063/1.5021596] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Glycine (Gly), the simplest amino-acid building-block of proteins, has been identified on icy dust grains in the interstellar medium, icy comets, and ice covered meteorites. These astrophysical ices contain simple molecules (e.g., CO2, H2O, CH4, HCN, and NH3) and are exposed to complex radiation fields, e.g., UV, γ, or X-rays, stellar/solar wind particles, or cosmic rays. While much current effort is focused on understanding the radiochemistry induced in these ices by high energy radiation, the effects of the abundant secondary low energy electrons (LEEs) it produces have been mostly assumed rather than studied. Here we present the results for the exposure of multilayer CO2:CH4:NH3 ice mixtures to 0-70 eV electrons under simulated astrophysical conditions. Mass selected temperature programmed desorption (TPD) of our electron irradiated films reveals multiple products, most notably intact glycine, which is supported by control measurements of both irradiated or un-irradiated binary mixture films, and un-irradiated CO2:CH4:NH3 ices spiked with Gly. The threshold of Gly formation by LEEs is near 9 eV, while the TPD analysis of Gly film growth allows us to determine the "quantum" yield for 70 eV electrons to be about 0.004 Gly per incident electron. Our results show that simple amino acids can be formed directly from simple molecular ingredients, none of which possess preformed C-C or C-N bonds, by the copious secondary LEEs that are generated by ionizing radiation in astrophysical ices.
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Affiliation(s)
- Sasan Esmaili
- Département de Médecine Nucléaire et Radiobiologie, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, Quebec J1H5N4, Canada
| | - Andrew D Bass
- Département de Médecine Nucléaire et Radiobiologie, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, Quebec J1H5N4, Canada
| | - Pierre Cloutier
- Département de Médecine Nucléaire et Radiobiologie, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, Quebec J1H5N4, Canada
| | - Léon Sanche
- Département de Médecine Nucléaire et Radiobiologie, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, Quebec J1H5N4, Canada
| | - Michael A Huels
- Département de Médecine Nucléaire et Radiobiologie, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, Quebec J1H5N4, Canada
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9
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Eddhif B, Allavena A, Liu S, Ribette T, Abou Mrad N, Chiavassa T, d’Hendecourt LLS, Sternberg R, Danger G, Geffroy-Rodier C, Poinot P. Development of liquid chromatography high resolution mass spectrometry strategies for the screening of complex organic matter: Application to astrophysical simulated materials. Talanta 2018; 179:238-245. [DOI: 10.1016/j.talanta.2017.11.008] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2017] [Revised: 11/03/2017] [Accepted: 11/06/2017] [Indexed: 02/03/2023]
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10
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Sugahara H, Meinert C, Nahon L, Jones NC, Hoffmann SV, Hamase K, Takano Y, Meierhenrich UJ. d-Amino acids in molecular evolution in space - Absolute asymmetric photolysis and synthesis of amino acids by circularly polarized light. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2018; 1866:743-758. [PMID: 29357311 DOI: 10.1016/j.bbapap.2018.01.004] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2017] [Revised: 12/22/2017] [Accepted: 01/05/2018] [Indexed: 02/02/2023]
Abstract
Living organisms on the Earth almost exclusively use l-amino acids for the molecular architecture of proteins. The biological occurrence of d-amino acids is rare, although their functions in various organisms are being gradually understood. A possible explanation for the origin of biomolecular homochirality is the delivery of enantioenriched molecules via extraterrestrial bodies, such as asteroids and comets on early Earth. For the asymmetric formation of amino acids and their precursor molecules in interstellar environments, the interaction with circularly polarized photons is considered to have played a potential role in causing chiral asymmetry. In this review, we summarize recent progress in the investigation of chirality transfer from chiral photons to amino acids involving the two major processes of asymmetric photolysis and asymmetric synthesis. We will discuss analytical data on cometary and meteoritic amino acids and their potential impact delivery to the early Earth. The ongoing and future ambitious space missions, Hayabusa2, OSIRIS-REx, ExoMars 2020, and MMX, are scheduled to provide new insights into the chirality of extraterrestrial organic molecules and their potential relation to the terrestrial homochirality. This article is part of a Special Issue entitled: d-Amino acids: biology in the mirror, edited by Dr. Loredano Pollegioni, Dr. Jean-Pierre Mothet and Dr. Molla Gianluca.
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Affiliation(s)
- Haruna Sugahara
- Institut de Chimie de Nice, Université Côte d'Azur, CNRS, UMR 7272, 06108 Nice, France
| | - Cornelia Meinert
- Institut de Chimie de Nice, Université Côte d'Azur, CNRS, UMR 7272, 06108 Nice, France
| | - Laurent Nahon
- L'Orme des Merisiers, Synchrotron SOLEIL, BP 48 Saint Aubin, 91192 Gif-sur-Yvette, France
| | - Nykola C Jones
- ISA, Department of Physics and Astronomy, Aarhus University, 8000 Aarhus C, Denmark
| | - Søren V Hoffmann
- ISA, Department of Physics and Astronomy, Aarhus University, 8000 Aarhus C, Denmark
| | - Kenji Hamase
- Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka, Japan
| | - Yoshinori Takano
- Department of Biogeochemistry, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima, Yokosuka, Kanagawa 237-0061, Japan
| | - Uwe J Meierhenrich
- Institut de Chimie de Nice, Université Côte d'Azur, CNRS, UMR 7272, 06108 Nice, France.
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11
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Atri D. On the possibility of galactic cosmic ray-induced radiolysis-powered life in subsurface environments in the Universe. J R Soc Interface 2017; 13:rsif.2016.0459. [PMID: 27707907 DOI: 10.1098/rsif.2016.0459] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2016] [Accepted: 09/05/2016] [Indexed: 12/19/2022] Open
Abstract
Photosynthesis is a mechanism developed by terrestrial life to utilize the energy from photons of solar origin for biological use. Subsurface regions are isolated from the photosphere, and consequently are incapable of utilizing this energy. This opens up the opportunity for life to evolve alternative mechanisms for harvesting available energy. Bacterium Candidatus Desulforudis audaxviator, found 2.8 km deep in a South African mine, harvests energy from radiolysis, induced by particles emitted from radioactive U, Th and K present in surrounding rock. Another radiation source in the subsurface environments is secondary particles generated by galactic cosmic rays (GCRs). Using Monte Carlo simulations, it is shown that it is a steady source of energy comparable to that produced by radioactive substances, and the possibility of a slow metabolizing life flourishing on it cannot be ruled out. Two mechanisms are proposed through which GCR-induced secondary particles can be utilized for biological use in subsurface environments: (i) GCRs injecting energy in the environment through particle-induced radiolysis and (ii) organic synthesis from GCR secondaries interacting with the medium. Laboratory experiments to test these hypotheses are also proposed. Implications of these mechanisms on finding life in the Solar System and elsewhere in the Universe are discussed.
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Affiliation(s)
- Dimitra Atri
- Blue Marble Space Institute of Science, 1001 4th Avenue, Suite 3201, Seattle, WA 98154, USA
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12
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Kobayashi K, Geppert WD, Carrasco N, Holm NG, Mousis O, Palumbo ME, Waite JH, Watanabe N, Ziurys LM. Laboratory Studies of Methane and Its Relationship to Prebiotic Chemistry. ASTROBIOLOGY 2017; 17:786-812. [PMID: 28727932 DOI: 10.1089/ast.2016.1492] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
To examine how prebiotic chemical evolution took place on Earth prior to the emergence of life, laboratory experiments have been conducted since the 1950s. Methane has been one of the key molecules in these investigations. In earlier studies, strongly reducing gas mixtures containing methane and ammonia were used to simulate possible reactions in the primitive atmosphere of Earth, producing amino acids and other organic compounds. Since Earth's early atmosphere is now considered to be less reducing, the contribution of extraterrestrial organics to chemical evolution has taken on an important role. Such organic molecules may have come from molecular clouds and regions of star formation that created protoplanetary disks, planets, asteroids, and comets. The interstellar origin of organics has been examined both experimentally and theoretically, including laboratory investigations that simulate interstellar molecular reactions. Endogenous and exogenous organics could also have been supplied to the primitive ocean, making submarine hydrothermal systems plausible sites of the generation of life. Experiments that simulate such hydrothermal systems where methane played an important role have consequently been conducted. Processes that occur in other Solar System bodies offer clues to the prebiotic chemistry of Earth. Titan and other icy bodies, where methane plays significant roles, are especially good targets. In the case of Titan, methane is both in the atmosphere and in liquidospheres that are composed of methane and other hydrocarbons, and these have been studied in simulation experiments. Here, we review the wide range of experimental work in which these various terrestrial and extraterrestrial environments have been modeled, and we examine the possible role of methane in chemical evolution. Key Words: Methane-Interstellar environments-Submarine hydrothermal systems-Titan-Origin of life. Astrobiology 17, 786-812.
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Affiliation(s)
- Kensei Kobayashi
- 1 Department of Chemistry, Yokohama National University , Yokohama, Japan
| | - Wolf D Geppert
- 2 Department of Geological Sciences, Stockholm University , Stockholm, Sweden
| | - Nathalie Carrasco
- 3 LATMOS, Université Versailles St-Quentin , UPMC, CNRS, Guyancourt, France
| | - Nils G Holm
- 2 Department of Geological Sciences, Stockholm University , Stockholm, Sweden
| | - Olivier Mousis
- 4 Aix Marseille Université , CNRS, LAM (Laboratoire d'Astrophysique de Marseille) UMR 7326, Marseille, France
| | | | - J Hunter Waite
- 6 Southwest Research Institute , San Antonio, Texas, USA
| | - Naoki Watanabe
- 7 Institute of Low Temperature Science, Hokkaido University , Sapporo, Japan
| | - Lucy M Ziurys
- 8 Department of Astronomy, Department of Chemistry and Biochemistry, and Steward Observatory, University of Arizona , Tucson, Arizona, USA
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Nelson AO, Dee R, Gudipati MS, Horányi M, James D, Kempf S, Munsat T, Sternovsky Z, Ulibarri Z. New experimental capability to investigate the hypervelocity micrometeoroid bombardment of cryogenic surfaces. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2016; 87:024502. [PMID: 26931872 DOI: 10.1063/1.4941960] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Ice is prevalent throughout the solar system and beyond. Though the evolution of many of these icy surfaces is highly dependent on associated micrometeoroid impact phenomena, experimental investigation of these impacts has been extremely limited, especially at the impactor speeds encountered in space. The dust accelerator facility at the Institute for Modeling Plasmas, Atmospheres, and Cosmic Dust (IMPACT) of NASA's Solar System Exploration Research Virtual Institute has developed a novel cryogenic system that will facilitate future study of hypervelocity impacts into ice and icy regolith. The target consists of a copper block, cooled by liquid nitrogen, upon which layers of vapor-deposited ice, pre-frozen ice, or icy regolith can be built in a controlled and quantifiable environment. This ice can be grown from a variety of materials, including H2O, CH3OH, NH3, and slurries containing nanophase iron. Ice temperatures can be varied between 96 K and 150 K and ice thickness greater than 150 nm can be accurately measured. Importantly, the composition of ion plumes created during micrometeoroid impacts onto these icy layers can be measured even in trace amounts by in situ time-of-flight mass spectroscopy. In this paper, we present the fundamental design components of the cryogenic target chamber at IMPACT and proof-of-concept results from target development and from first impacts into thick layers of water ice.
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Affiliation(s)
- Andrew Oakleigh Nelson
- Institute for Modeling Plasma, Atmospheres and Cosmic Dust (IMPACT), University of Colorado, Boulder, Colorado 80309, USA
| | - Richard Dee
- Institute for Modeling Plasma, Atmospheres and Cosmic Dust (IMPACT), University of Colorado, Boulder, Colorado 80309, USA
| | - Murthy S Gudipati
- Science Division, Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Pasadena, California 91109, USA
| | - Mihály Horányi
- Institute for Modeling Plasma, Atmospheres and Cosmic Dust (IMPACT), University of Colorado, Boulder, Colorado 80309, USA
| | - David James
- Institute for Modeling Plasma, Atmospheres and Cosmic Dust (IMPACT), University of Colorado, Boulder, Colorado 80309, USA
| | - Sascha Kempf
- Institute for Modeling Plasma, Atmospheres and Cosmic Dust (IMPACT), University of Colorado, Boulder, Colorado 80309, USA
| | - Tobin Munsat
- Institute for Modeling Plasma, Atmospheres and Cosmic Dust (IMPACT), University of Colorado, Boulder, Colorado 80309, USA
| | - Zoltán Sternovsky
- Institute for Modeling Plasma, Atmospheres and Cosmic Dust (IMPACT), University of Colorado, Boulder, Colorado 80309, USA
| | - Zach Ulibarri
- Institute for Modeling Plasma, Atmospheres and Cosmic Dust (IMPACT), University of Colorado, Boulder, Colorado 80309, USA
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Nhlabatsi ZP, Bhasi P, Sitha S. Possible interstellar formation of glycine through a concerted mechanism: a computational study on the reaction of CH2NH, CO2 and H2. Phys Chem Chem Phys 2016; 18:20109-17. [DOI: 10.1039/c5cp07124k] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Computational studies on the reaction of CH2NH, CO2 and H2 show the possible interstellar formation of glycine in both hot-cores and cold interstellar clouds.
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Affiliation(s)
- Zanele P. Nhlabatsi
- Department of Chemistry
- University of Johannesburg
- Auckland Park
- South Africa 2006
| | - Priya Bhasi
- Department of Chemistry
- University of Johannesburg
- Auckland Park
- South Africa 2006
| | - Sanyasi Sitha
- Department of Chemistry
- University of Johannesburg
- Auckland Park
- South Africa 2006
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15
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Ranković ML, Canon F, Nahon L, Giuliani A, Milosavljević AR. Photoinduced fragmentation of gas-phase protonated leucine- enkephalin peptide in the VUV range. ACTA ACUST UNITED AC 2015. [DOI: 10.1088/1742-6596/635/1/012034] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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16
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Louie MK, Francisco JS, Verdicchio M, Klippenstein SJ, Sinha A. Dimethylamine Addition to Formaldehyde Catalyzed by a Single Water Molecule: A Facile Route for Atmospheric Carbinolamine Formation and Potential Promoter of Aerosol Growth. J Phys Chem A 2015; 120:1358-68. [DOI: 10.1021/acs.jpca.5b04887] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Matthew K. Louie
- Department
of Chemistry and Biochemistry, University of California−San Diego, La Jolla, California 92093-0314, United States
| | - Joseph S. Francisco
- Department
of Chemistry, Purdue University, West Lafayette, Indiana 47907-2084, United States
| | - Marco Verdicchio
- Argonne National
Laboratory, Chemical Sciences and Engineering Division, Argonne, Illinois 60439-4837, United States
| | - Stephen J. Klippenstein
- Argonne National
Laboratory, Chemical Sciences and Engineering Division, Argonne, Illinois 60439-4837, United States
| | - Amitabha Sinha
- Department
of Chemistry and Biochemistry, University of California−San Diego, La Jolla, California 92093-0314, United States
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17
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Oba Y, Watanabe N, Osamura Y, Kouchi A. Chiral glycine formation on cold interstellar grains by quantum tunneling hydrogen–deuterium substitution reactions. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.05.070] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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18
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Munegumi T. Chemical Evolution of Simple Amino Acids to Asparagine under Discharge onto the Primitive Hydrosphere: Simulation Experiments Using Contact Glow Discharge. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2014. [DOI: 10.1246/bcsj.20140164] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Paardekooper DM, Bossa JB, Isokoski K, Linnartz H. Laser desorption time-of-flight mass spectrometry of ultraviolet photo-processed ices. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2014; 85:104501. [PMID: 25362425 DOI: 10.1063/1.4896754] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
A new ultra-high vacuum experiment is described that allows studying photo-induced chemical processes in interstellar ice analogues. MATRI(2)CES - a Mass Analytical Tool to study Reactions in Interstellar ICES applies a new concept by combining laser desorption and time-of-flight mass spectrometry with the ultimate goal to characterize in situ and in real time the solid state evolution of organic compounds upon UV photolysis for astronomically relevant ice mixtures and temperatures. The performance of the experimental setup is demonstrated by the kinetic analysis of the different photoproducts of pure methane (CH4) ice at 20 K. A quantitative approach provides formation yields of several new species with up to four carbon atoms. Convincing evidence is found for the formation of even larger species. Typical mass resolutions obtained range from M/ΔM ∼320 to ∼400 for CH4 and argon, respectively. Additional tests show that the typical detection limit (in monolayers) is ⩽0.02 ML, substantially more sensitive than the regular techniques used to investigate chemical processes in interstellar ices.
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Affiliation(s)
- D M Paardekooper
- Raymond and Beverly Sackler Laboratory for Astrophysics, Leiden Observatory, Leiden University, PO Box 9513, 2300 RA Leiden, The Netherlands
| | - J-B Bossa
- Raymond and Beverly Sackler Laboratory for Astrophysics, Leiden Observatory, Leiden University, PO Box 9513, 2300 RA Leiden, The Netherlands
| | - K Isokoski
- Raymond and Beverly Sackler Laboratory for Astrophysics, Leiden Observatory, Leiden University, PO Box 9513, 2300 RA Leiden, The Netherlands
| | - H Linnartz
- Raymond and Beverly Sackler Laboratory for Astrophysics, Leiden Observatory, Leiden University, PO Box 9513, 2300 RA Leiden, The Netherlands
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20
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Nishino H, Hosaka M, Katoh M, Inoue Y. Photoreaction of rac-leucine in ice by circularly polarized synchrotron radiation: temperature-induced mechanism switching from Norrish Type II to deamination. Chemistry 2013; 19:13929-36. [PMID: 24038443 DOI: 10.1002/chem.201301831] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2013] [Revised: 07/07/2013] [Indexed: 11/08/2022]
Abstract
The delivery of extraterrestrial organics to primitive Earth is considered to have triggered the origin and subsequent evolution of life. Indeed, enantiomerically enriched amino acids of nonterrestrial origin have been found in carbonaceous meteorites, and enantioselective photodecomposition by circularly polarized light (CPL) in outer space has been proposed to have played some role in the initial enantiomeric bias. To experimentally examine this possibility and elucidate the photoreaction mechanisms, we have studied the photolysis of racemic leucine (rac-Leu) in acidic and neutral ice/water media at 21-298 K with left- and right-CPL in an attempt to detect enantiomerically enriched D- and L-Leu, respectively. Comprehensive product analyses revealed that the CPL-induced deracemization of Leu proceeds in both acidic and neutral ice matrices even at 21 K, and that the main mechanism switches from Norrish-type II γ-hydrogen abstraction to SN i deamination on lowering the temperature. The potential role of the CPL-induced photodecomposition of amino acids as a source of the enantiomer imbalance in meteorites is discussed.
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Affiliation(s)
- Hideo Nishino
- Entropy Control Project (Japan) Science and Technology Agency; Osaka Municipal Technical Research Institute, 1-6-50 Morinomiya, Joto-ku, Osaka 536-8553 (Japan)
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21
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Kurihara H, Takano Y, Kaneko T, Obayashi Y, Kobayashi K. Stability of Amino Acids and Related Compounds in Simulated Submarine Hydrothermal Systems. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2012. [DOI: 10.1246/bcsj.20110349] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
| | | | - Takeo Kaneko
- Faculty of Engineering, Yokohama National University
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22
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Sarker PK, Takahashi JI, Kawamoto Y, Obayashi Y, Kaneko T, Kobayashi K. Photostability of Iiovaline and its precursor 5-Ethyl-5- methylhydantoin exposed to simulated space radiations. Int J Mol Sci 2012; 13:1006-1017. [PMID: 22312300 PMCID: PMC3269734 DOI: 10.3390/ijms13011006] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2011] [Revised: 01/04/2012] [Accepted: 01/09/2012] [Indexed: 11/16/2022] Open
Abstract
Aqueous solutions of isovaline and its precursor molecule, 5-ethyl-5-methylhydantoin, were irradiated with ultraviolet and γ-ray photons, to evaluate their structural stability against space radiation. The degree of photolysis was measured and irradiation products were identified using chiral, reversed-phase and ion-exchange high-performance liquid chromatography. The experimental results show that the degree of photolysis of 5-ethyl-5-methylhydantoin is more significant than that of isovaline under ultraviolet light irradiation, while the results under γ-ray irradiation are the opposite. As the products of isovaline photolysis, aspartic acid, serine, glutamic acid and alanine were dominantly detected.
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Affiliation(s)
- Palash K. Sarker
- Department of Chemistry and Biotechnology, Faculty of Engineering, Yokohama National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan; E-Mails: (Y.K.); (Y.O.); (T.K.); (K.K.)
| | - Jun-ichi Takahashi
- NTT Microsystem Integration Laboratories, 3-1 Morinosato Wakamiya, Atsugi 243-0198, Japan; E-Mail:
| | - Yukinori Kawamoto
- Department of Chemistry and Biotechnology, Faculty of Engineering, Yokohama National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan; E-Mails: (Y.K.); (Y.O.); (T.K.); (K.K.)
| | - Yumiko Obayashi
- Department of Chemistry and Biotechnology, Faculty of Engineering, Yokohama National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan; E-Mails: (Y.K.); (Y.O.); (T.K.); (K.K.)
| | - Takeo Kaneko
- Department of Chemistry and Biotechnology, Faculty of Engineering, Yokohama National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan; E-Mails: (Y.K.); (Y.O.); (T.K.); (K.K.)
| | - Kensei Kobayashi
- Department of Chemistry and Biotechnology, Faculty of Engineering, Yokohama National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan; E-Mails: (Y.K.); (Y.O.); (T.K.); (K.K.)
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23
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Izumi Y, Nakagawa K. Quantum yields of decomposition and homo-dimerization of solid L-alanine induced by 7.2 eV Vacuum ultraviolet light irradiation: an estimate of the half-life of L-alanine on the surface of space objects. ORIGINS LIFE EVOL B 2011; 41:385-95. [PMID: 21461647 DOI: 10.1007/s11084-011-9237-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2011] [Accepted: 02/21/2011] [Indexed: 11/30/2022]
Abstract
One of the leading hypotheses regarding the origin of prebiotic molecules on primitive Earth is that they formed from inorganic molecules in extraterrestrial environments and were delivered by meteorites, space dust and comets. To evaluate the availability of extraterrestrial amino acids, it is necessary to examine their decomposition and oligomerization rates as induced by extraterrestrial energy sources, such as vacuum ultraviolet (VUV) and X-ray photons and high energy particles. This paper reports the quantum yields of decomposition ((8.2 ± 0.7) × 10(-2) photon(-1)) and homo-dimerization ((1.2 ± 0.3) × 10(-3) photon(-1)) and decomposition of the dimer (0.24 ± 0.06 photon(-1)) of solid L-alanine (Ala) induced by VUV light with an energy of 7.2 eV. Using these quantum yields, the half-life of L-Ala on the surface of a space object in the present earth orbit was estimated to be about 52 days, even when only photons with an energy of 7.2 eV emitted from the present Sun were considered. The actual half-life of solid L-Ala on the surface of a space object orbit around the present day Earth would certainly be much shorter than our estimate, because of the added effect of photons and particles of other energies. Thus, we propose that L-Ala needs to be shielded from solar VUV in protected environments, such as the interior of a meteorite, within a time scale of days after synthesis to ensure its arrival on the primitive Earth.
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Affiliation(s)
- Yudai Izumi
- Graduate School of Human Development and Environment, Kobe University, Kobe, Hyogo, Japan.
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24
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Bari S, Gonzalez-Magaña O, Reitsma G, Werner J, Schippers S, Hoekstra R, Schlathölter T. Photodissociation of protonated leucine-enkephalin in the VUV range of 8–40 eV. J Chem Phys 2011; 134:024314. [DOI: 10.1063/1.3515301] [Citation(s) in RCA: 73] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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25
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Kayi H, Kaiser RI, Head JD. A computational study on the structures of methylamine–carbon dioxide–water clusters: evidence for the barrier free formation of the methylcarbamic acid zwitterion (CH3NH2+COO−) in interstellar water ices. Phys Chem Chem Phys 2011; 13:11083-98. [DOI: 10.1039/c0cp01962c] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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26
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Park SC, Moon ES, Kang H. Some fundamental properties and reactions of ice surfaces at low temperatures. Phys Chem Chem Phys 2010; 12:12000-11. [PMID: 20683515 DOI: 10.1039/c003592k] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ice surfaces offer a unique chemical environment in which reactions occur quite differently from those in liquid water or gas phases. In this article, we examine the basic properties of ice surfaces below the surface premelting temperature and discuss some of the recent investigations carried out on reactions at the ice surfaces. The static and dynamic properties of an ice surface as a reaction medium, such as its structure, molecule diffusion and proton transfer dynamics, and the surface preference of hydronium and hydroxide ions, are discussed in relation to the reactivity of the surface.
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Affiliation(s)
- Seong-Chan Park
- Analytical Research Group, Central R&D Institute, Samsung Electro-Mechanics Co., Suwon, South Korea 443-743
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27
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Rimola A, Ugliengo P. The role of defective silica surfaces in exogenous delivery of prebiotic compounds: clues from first principles calculations. Phys Chem Chem Phys 2009; 11:2497-506. [DOI: 10.1039/b820577a] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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29
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Zaia DAM, Zaia CTBV, De Santana H. Which amino acids should be used in prebiotic chemistry studies? ORIGINS LIFE EVOL B 2008; 38:469-88. [PMID: 18925425 DOI: 10.1007/s11084-008-9150-5] [Citation(s) in RCA: 108] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2008] [Accepted: 09/30/2008] [Indexed: 11/25/2022]
Abstract
The adsorption of amino acids on minerals and their condensation under conditions that resemble those of prebiotic earth is a well studied subject. However, which amino acids should be used in these experiments is still an open question. The main goal of this review is to attempt to answer this question. There were two sources of amino acids for the prebiotic earth: (1) exogenous -- meaning that the amino acids were synthesized outside the earth and delivered to our planet by interplanetary dust particles (IDPs), meteorites, comets, etc. and (2) endogenous -- meaning that they were synthesized on earth in atmospheric mixtures, hydrothermal vents, etc. For prebiotic chemistry studies, the use of a mixture of amino acids from both endogenous and exogenous sources is suggested. The exogenous contribution of amino acids to this mixture is very different from the average composition of proteins, and contains several non-protein amino acids. On the other hand, the mixture of amino acids from endogenous sources is seems to more closely resemble the amino acid composition of terrestrial proteins.
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Affiliation(s)
- Dimas A M Zaia
- Departamento de Química-CCE, Universidade Estadual de Londrina, Londrina, PR, Brazil.
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30
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Hudson RL, Moore MH, Dworkin JP, Martin MP, Pozun ZD. Amino acids from ion-irradiated nitrile-containing ices. ASTROBIOLOGY 2008; 8:771-779. [PMID: 18752457 DOI: 10.1089/ast.2007.0131] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Solid CH(3)CN and solid H(2)O + CH(3)CN were ion irradiated near 10 K to initiate chemical reactions thought to occur in extraterrestrial ices. The infrared spectra of these samples after irradiation revealed the synthesis of new molecules. After the irradiated ices were warmed to remove volatiles, the resulting residual material was extracted and analyzed. Both unhydrolyzed and acid-hydrolyzed residues were examined by both liquid and gas chromatographic-mass spectral methods and found to contain a rich mixture of products. The unhydrolyzed samples showed HCN, NH(3), acetaldehyde (formed by reaction with background and atmospheric H(2)O), alkyamines, and numerous other compounds, but no amino acids. However, reaction products in hydrolyzed residues contained a suite of amino acids that included some found in carbonaceous chondrite meteorites. Equal amounts of D- and L-enantiomers were found for each chiral amino acid detected. Extensive use was made of (13)C-labeled CH(3)CN to confirm amino acid identifications and discriminate against possible terrestrial contaminants. The results reported here show that ices exposed to cosmic rays can yield products that, after hydrolysis, form a set of primary amino acids equal in richness to those made by other methods, such as photochemistry.
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Affiliation(s)
- Reggie L Hudson
- Department of Chemistry, Eckerd College, St. Petersburg, Florida 33711, USA.
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31
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Ruiz-Bermejo M, Menor-Salván C, Osuna-Esteban S, Veintemillas-Verdaguer S. The effects of ferrous and other ions on the abiotic formation of biomolecules using aqueous aerosols and spark discharges. ORIGINS LIFE EVOL B 2007; 37:507-21. [PMID: 17899439 DOI: 10.1007/s11084-007-9107-0] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2006] [Accepted: 07/14/2007] [Indexed: 10/22/2022]
Abstract
It has been postulated that the oceans on early Earth had a salinity of 1.5 to 2 times the modern value and a pH between 4 and 10. Moreover, the presence of the banded iron formations shows that Fe(+2) was present in significant concentrations in the primitive oceans. Assuming the hypotheses above, in this work we explore the effects of Fe(+2) and other ions in the generation of biomolecules in prebiotic simulation experiments using spark discharges and aqueous aerosols. These aerosols have been prepared using different sources of Fe(+2), such as FeS, FeCl(2) and FeCO(3), and other salts (alkaline and alkaline earth chlorides and sodium bicarbonate at pH = 5.8). In all these experiments, we observed the formation of some amino acids, carboxylic acids and heterocycles, involved in biological processes. An interesting consequence of the presence of soluble Fe(+2) was the formation of Prussian Blue, Fe(4)[Fe(CN)(6)](3), which has been suggested as a possible reservoir of HCN in the initial prebiotic conditions on the Earth.
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Affiliation(s)
- M Ruiz-Bermejo
- Consejo de Investigaciones Científicas-Instituto Nacional de Técnica Aeroespacial (CSIC-INTA), Centro de Astrobiología, Carretera Torrejón-Ajalvir, Km. 4,2, 28850 Torrejón de Ardoz, Madrid, Spain.
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Courmier D, Gardebien F, Minot C, St-Amant A. A computational study of the water-catalyzed formation of NH2CH2OH. Chem Phys Lett 2005. [DOI: 10.1016/j.cplett.2004.12.121] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Sanfelix PC, Al-Halabi A, Darling GR, Holloway S, Kroes GJ. Protons colliding with crystalline ice: proton reflection and collision induced water desorption at low incidence energies. J Am Chem Soc 2005; 127:3944-51. [PMID: 15771531 DOI: 10.1021/ja040171u] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
We present results of classical trajectory (CT) calculations on the sticking of protons to the basal plane (0001) face of crystalline ice, for normal incidence at a surface temperature (Ts) of 80 K. The calculations were performed for moderately low incidence energies (Ei) ranging from 0.05 to 4.0 eV. Surprisingly, significant reflection is predicted at low values of Ei (< or = 0.2 eV) due to repulsive electrostatic interactions between the incident proton and the surface water molecules with one of their H-atoms pointing upward toward the gas phase. The sticking probability increases with Ei and converges to unity for Ei > or = 0.8 eV. In the case of sticking, the proton is trapped in the ice forming a Zundel complex (H5O2+), with an average binding energy of 9.9 eV with a standard deviation of 0.5 eV, independent of the value of Ei. In nearly all sticking trajectories, the proton is implanted into the ice surface, with a penetration depth that increases with Ei. The strong interaction with the neighboring water molecules leads to a local rupture of the hydrogen bonding network, resulting in collision induced desorption of water (puffing), a process that occurs with significant probability even at the lowest Ei considered. The probability of water desorption increases with Ei. In nearly all trajectories in which water desorption occurs, a single three-coordinated water molecule is desorbed from the topmost monolayer.
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Affiliation(s)
- Pepa Cabrera Sanfelix
- Surface Science Research Centre, Department of Chemistry, The University of Liverpool, Liverpool L69 3BX, UK
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Comets: Potential Sources of Prebiotic Molecules for the Early Earth. LECTURES IN ASTROBIOLOGY 2005. [DOI: 10.1007/10913406_9] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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Takano Y, Tsuboi T, Kaneko T, Kobayashi K, Marumo K. Pyrolysis of High-Molecular-Weight Complex Organics Synthesized from a Simulated Interstellar Gas Mixture Irradiated with 3 MeV Proton Beam. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2004. [DOI: 10.1246/bcsj.77.779] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Jochims HW, Schwell M, Chotin JL, Clemino M, Dulieu F, Baumgärtel H, Leach S. Photoion mass spectrometry of five amino acids in the 6–22 eV photon energy range. Chem Phys 2004. [DOI: 10.1016/j.chemphys.2003.11.035] [Citation(s) in RCA: 108] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Delitsky ML, Lane AL. Saturn's inner satellites: Ice chemistry and magnetosphere effects. ACTA ACUST UNITED AC 2002. [DOI: 10.1029/2002je001855] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Kobayashi K, Masuda H, Ushio KI, Ohashi A, Yamanashi H, Kaneko T, Takahashi JI, Hosokawa T, Hashimoto H, Saito T. Formation of bioorganic compounds in simulated planetary atmospheres by high energy particles or photons. ADVANCES IN SPACE RESEARCH : THE OFFICIAL JOURNAL OF THE COMMITTEE ON SPACE RESEARCH (COSPAR) 2001; 27:207-215. [PMID: 11605633 DOI: 10.1016/s0273-1177(01)00049-7] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Various types of organic compounds have been detected in Jupiter, Titan, and cometary coma. It is probable that organic compounds were formed in primitive Earth and Mars atmospheres. Cosmic rays and solar UV are believed to be two major energy sources for organic formation in space. We examined energetics of organic formation in simulated planetary atmospheres. Gas mixtures including a C-source (carbon monoxide or methane) and a N-source (nitrogen or ammonia) was irradiated with the followings: High energy protons or electrons from accelerators, gamma-rays from 60Co, UV light from a deuterium lamp, and soft X-rays or UV light from an electron synchrotron. Amino acids were detected in the products of particles, gamma-rays and soft X-rays irradiation from each gas mixture examined. UV light gave, however, no amino acid precursors in the gas mixture of carbon monoxide, nitrogen and nitrogen. It gave only a trace of them in the gas mixture of carbon monoxide, ammonia and water or that of methane, nitrogen and water. Yield of amino acid precursors by photons greatly depended on their wavelength. These results suggest that nitrogen-containing organic compounds like amino acid precursors were formed chiefly with high energy particles, not UV photons, in Titan or primitive Earth/Mars atmospheres where ammonia is not available as a predominant N-source.
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Affiliation(s)
- K Kobayashi
- Department of Chemistry and Biotechnology, Yokohama National University, Hodogaya-ku, Yokohama 240-8501, Japan
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Strazzulla G, Palumbo ME. Organics produced by ion irradiation of ices: some recent results. ADVANCES IN SPACE RESEARCH : THE OFFICIAL JOURNAL OF THE COMMITTEE ON SPACE RESEARCH (COSPAR) 2001; 27:237-243. [PMID: 11605638 DOI: 10.1016/s0273-1177(01)00053-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Some results, recently obtained from laboratory experiments of ion irradiation of ice mixtures containing H, C, N, and O, are here summarized. They are relevant to the formation and evolution of complex organics on interstellar dust, comets and other small bodies in the external Solar System. In particular the formation of CN-bearing species is discussed. Interstellar dust incorporated into primitive Solar System bodies and subsequently delivered to the early Earth, may have contributed to the origin of life. The delivery of CN-bearing species seems to have been necessary because molecules containing the cyanogen bond are difficult to be produced in an environment that is not strongly reducing as that of the early Earth probably was. Moreover we report on an ongoing research program concerning the interaction between refractory materials produced by ion irradiation of simple ices and biological materials (amino acids, proteins, cells).
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Affiliation(s)
- G Strazzulla
- Osservatorio Astrofisico di Catania, Via S. Sofia 78, I-95123 Catania, Italy
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Greenberg JM, Li A. Evolution of interstellar dust and its relevance to life's origin: laboratory and space experiments. UCHU SEIBUTSU KAGAKU 1998; 12:96-101. [PMID: 11541889 DOI: 10.2187/bss.12.96] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
A scheme is presented for an analog investigation of long term irradiation of ices and organics following the cyclic evolution of interstellar dust. The irradiation is proposed to be performed at cryogenic temperatures on a space platform, and with an enhancement of the solar ultraviolet flux using a concave mirror, grating combination which eliminates the visual and infrared from the sample surface.
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Kobayashi K, Kaneko T, Saito T, Oshima T. Amino acid formation in gas mixtures by high energy particle irradiation. ORIGINS LIFE EVOL B 1998; 28:155-65. [PMID: 11536862 DOI: 10.1023/a:1006561217063] [Citation(s) in RCA: 94] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Amino acids were formed from carbon monoxide, nitrogen and water, which are possible constituents of the primitive earth's atmosphere, by irradiation with high energy particles (components of cosmic rays). Glycine yield was proportional to the total energy deposited to the gas mixture, and its G-value was as high as 0.02 when the carbon monoxide/nitrogen ratio was 1. Based on an estimate of the effective energies of various types of energy sources available in the primitive earth's atmosphere for amino acid synthesis, it is suggested that cosmic rays were one of the most important energy sources for the synthesis of amino acids on the primitive earth.
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Affiliation(s)
- K Kobayashi
- Department of Physical Chemistry, Yokohama National University, Japan
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Kasamatsu T, Kaneko T, Saito T, Kobayashi K. Formation of Organic Compounds in Simulated Interstellar Media with High Energy Particles. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 1997. [DOI: 10.1246/bcsj.70.1021] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Kobayashi K, Sato T, Kajishima S, Kaneko T, Ishikawa Y, Saito T. Possible complex organic compounds on Mars. ADVANCES IN SPACE RESEARCH : THE OFFICIAL JOURNAL OF THE COMMITTEE ON SPACE RESEARCH (COSPAR) 1997; 19:1067-1076. [PMID: 11541335 DOI: 10.1016/s0273-1177(97)00355-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
It is suggested that primitive Mars had somehow similar environments as primitive Earth. If life was born on the primitive earth using organic compounds which were produced from the early Earth environment, the same types of organic compounds were also formed on primitive Mars. Such organic compounds might have been preserved on Mars still now. We are studying possible organic formation on primitive and present Mars. A gaseous mixture of CO2, CO, N2 and H2O with various mixing ratios were irradiated with high energy protons (major components of cosmic rays). Hydrogen cyanide and formaldehyde were detected among volatile products, and yellow-brown-colored water-soluble non-volatile substances were produced, which gave amino acids after acid-hydrolysis. Major part of "amino acid precursors" were not simple molecules like aminonitriles, but complex compounds which eluted earlier than free amino acids in cation-exchange HPLC. These organic compounds should be major targets in the future Mars mission. Strategy for the detection of the complex organics on Mars will be discussed.
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Affiliation(s)
- K Kobayashi
- Faculty of Engineering, Yokohama National University, Hodogaya-ku, Japan
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Simakov MB, Kuzicheva EA, Antropov AE. Formation of oligopeptides on the surface of small bodies in solar system by cosmic radiation. ADVANCES IN SPACE RESEARCH : THE OFFICIAL JOURNAL OF THE COMMITTEE ON SPACE RESEARCH (COSPAR) 1997; 19:1063-1066. [PMID: 11541334 DOI: 10.1016/s0273-1177(97)00354-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
The present experiment indicates that oligopeptides are easily produced in solid state from mixtures of simple amino acids by irradiating with high energy charged particles. We investigated such amino acids and their mixtures as tryptophan, tyrosine and glycine. The thin films was irradiated with protons (6.6 MeV). Such dipeptides as Trp-Trp, Gly-Tyr, Tyr-Gly, and Tyr-Tyr have been detected as products of irradiation. Cosmic rays might be an effective energy source for abiotic formation of bioorganic compounds on the surface of small bodies in the solar system on early stage of formation of planets as well as at present day.
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Affiliation(s)
- M B Simakov
- Institute of Cytology, St. Petersburg, Russia
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Strazzulla G. Ion irradiation: its relevance to the evolution of complex organics in the outer solar system. ADVANCES IN SPACE RESEARCH : THE OFFICIAL JOURNAL OF THE COMMITTEE ON SPACE RESEARCH (COSPAR) 1997; 19:1077-1084. [PMID: 11541336 DOI: 10.1016/s0273-1177(97)00356-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Ion irradiation of carbon containing ices produces several effects among which the formation of complex molecules and even refractory organic materials whose spectral color and molecular complexity both depend on the amount of deposited energy. Here results from laboratory experiments are summarized. Their relevance for the formation and evolution of simple molecules and complex organic materials on planetary bodies in the external Solar System is outlined.
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Affiliation(s)
- G Strazzulla
- Osservatorio Astrofisico, Citta Universitaria, Catania, Italy
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