1
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Liu Z, Brian D, Sun X. PyCTRAMER: A Python package for charge transfer rate constant of condensed-phase systems from Marcus theory to Fermi's golden rule. J Chem Phys 2024; 161:064101. [PMID: 39120028 DOI: 10.1063/5.0224524] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2024] [Accepted: 07/24/2024] [Indexed: 08/10/2024] Open
Abstract
In this work, we introduce PyCTRAMER, a comprehensive Python package designed for calculating charge transfer (CT) rate constants in disordered condensed-phase systems at finite temperatures, such as organic photovoltaic (OPV) materials. PyCTRAMER is a restructured and enriched version of the CTRAMER (Charge-Transfer RAtes from Molecular dynamics, Electronic structure, and Rate theory) package [Tinnin et al. J. Chem. Phys. 154, 214108 (2021)], enabling the computation of the Marcus CT rate constant and the six levels of the linearized semiclassical approximations of Fermi's golden rule (FGR) rate constant. It supports various types of intramolecular and intermolecular CT transitions from the excitonic states to CT state. Integrating quantum chemistry calculations, all-atom molecular dynamics (MD) simulations, spin-boson model construction, and rate constant calculations, PyCTRAMER offers an automatic workflow for handling photoinduced CT processes in explicit solvent environments and interfacial CT in amorphous donor/acceptor blends. The package also provides versatile tools for individual workflow steps, including electronic state analysis, state-specific force field construction, MD simulations, and spin-boson model construction from energy trajectories. We demonstrate the software's capabilities through two examples, highlighting both intramolecular and intermolecular CT processes in prototypical OPV systems.
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Affiliation(s)
- Zengkui Liu
- Shanghai Frontiers Science Center of Artificial Intelligence and Deep Learning, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, China
- Division of Arts and Sciences, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, China
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshan Road North, Shanghai 200062, China
- Department of Chemistry, New York University, New York, New York 10003, USA
| | - Dominikus Brian
- Division of Arts and Sciences, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, China
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshan Road North, Shanghai 200062, China
- Department of Chemistry, New York University, New York, New York 10003, USA
| | - Xiang Sun
- Shanghai Frontiers Science Center of Artificial Intelligence and Deep Learning, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, China
- Division of Arts and Sciences, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, China
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshan Road North, Shanghai 200062, China
- Department of Chemistry, New York University, New York, New York 10003, USA
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2
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Dantus M. Ultrafast studies of elusive chemical reactions in the gas phase. Science 2024; 385:eadk1833. [PMID: 39116221 DOI: 10.1126/science.adk1833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2024] [Accepted: 06/11/2024] [Indexed: 08/10/2024]
Abstract
The chemical composition of the interstellar medium and planetary atmospheres is constantly in flux as atoms and molecules collide and interact with high-energy particles such as electrons, protons, and photons. These transformative processes ultimately lead to the coalescence of molecules and eventually the birth of stars. Our understanding of these chemical ecosystems relies on models that synthesize data from gas-phase experiments, providing insights into reaction cross sections. This Review examines efforts to delve into the fundamental bond-forming and bond-breaking dynamics that occur during bimolecular and electron-initiated reactions. These experiments involve clever approaches to establish a time reference and the collision geometry necessary for tracking atomic motion with femtosecond time resolution. Findings from these efforts enhance present models and improve predictions for molecule-molecule and electron-molecule collisions.
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Affiliation(s)
- Marcos Dantus
- Department of Chemistry, Michigan State University, East Lansing, MI 48824, USA
- Department of Physics and Astronomy, Michigan State University, East Lansing, MI 48824, USA
- Department of Electrical and Computer Engineering, Michigan State University, East Lansing, MI 48824, USA
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3
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Samajdar R, Meigooni M, Yang H, Li J, Liu X, Jackson NE, Mosquera MA, Tajkhorshid E, Schroeder CM. Secondary structure determines electron transport in peptides. Proc Natl Acad Sci U S A 2024; 121:e2403324121. [PMID: 39052850 DOI: 10.1073/pnas.2403324121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 06/14/2024] [Indexed: 07/27/2024] Open
Abstract
Proteins play a key role in biological electron transport, but the structure-function relationships governing the electronic properties of peptides are not fully understood. Despite recent progress, understanding the link between peptide conformational flexibility, hierarchical structures, and electron transport pathways has been challenging. Here, we use single-molecule experiments, molecular dynamics (MD) simulations, nonequilibrium Green's function-density functional theory (NEGF-DFT), and unsupervised machine learning to understand the role of secondary structure on electron transport in peptides. Our results reveal a two-state molecular conductance behavior for peptides across several different amino acid sequences. MD simulations and Gaussian mixture modeling are used to show that this two-state molecular conductance behavior arises due to the conformational flexibility of peptide backbones, with a high-conductance state arising due to a more defined secondary structure (beta turn or 310 helices) and a low-conductance state occurring for extended peptide structures. These results highlight the importance of helical conformations on electron transport in peptides. Conformer selection for the peptide structures is rationalized using principal component analysis of intramolecular hydrogen bonding distances along peptide backbones. Molecular conformations from MD simulations are used to model charge transport in NEGF-DFT calculations, and the results are in reasonable qualitative agreement with experiments. Projected density of states calculations and molecular orbital visualizations are further used to understand the role of amino acid side chains on transport. Overall, our results show that secondary structure plays a key role in electron transport in peptides, which provides broad avenues for understanding the electronic properties of proteins.
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Affiliation(s)
- Rajarshi Samajdar
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
| | - Moeen Meigooni
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
| | - Hao Yang
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801
| | - Jialing Li
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
| | - Xiaolin Liu
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801
| | - Nicholas E Jackson
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801
| | - Martín A Mosquera
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT 59717
| | - Emad Tajkhorshid
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801
| | - Charles M Schroeder
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801
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4
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Heck J, Kucenko A, Hoffmann A, Herres-Pawlis S. Position of substituents directs the electron transfer properties of entatic state complexes: new insights from guanidine-quinoline copper complexes. Dalton Trans 2024; 53:12527-12542. [PMID: 39016043 DOI: 10.1039/d4dt01539h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/18/2024]
Abstract
In a previous study, we showed that the properties and the ability as an entatic state model of copper guanidine quinoline complexes are significantly influenced by a methyl or methyl ester substituent in the 2-position. To prove the importance of the 2-position of the substituent, two novel guanidine quinoline ligands with a methyl or methyl ester substituent in the 4-position and the corresponding copper complexes were synthesized and characterized in this study. The influence of the substituent position on the copper complexes was investigated with various experimental and theoretical methods. The molecular structures of the copper complexes were examined in the solid state by single-crystal X-ray diffraction (SCXRD) and by density functional theory (DFT) calculations indicating a strong dependency on the substituent position compared to the systems substituted in the 2-position from the previous study. Further, the significantly different influence on the donor properties in dependency on the substituent position was analyzed with natural bond orbital (NBO) calculations. By the determination of the redox potentials, the impact on the electrochemical stabilization was examined. With regard to further previously analyzed guanidine quinoline copper complexes, the electrochemical stabilization was correlated with the charge-transfer energies calculated by NBO analysis and ground state energies, revealing the substituent influence and enabling a comparatively easy and accurate possibility for the theoretical calculation of the relative redox potential. Finally, the electron transfer properties were quantified by determining the electron self-exchange rates via the Marcus theory and by theoretical calculation of the reorganization energies via Nelsen's four-point method. The results gave important insights into the dependency between the ability of the copper complexes as entatic state model and the type and position of the substituent.
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Affiliation(s)
- Joshua Heck
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1a, 52074 Aachen, Germany.
| | - Anastasia Kucenko
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1a, 52074 Aachen, Germany.
| | - Alexander Hoffmann
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1a, 52074 Aachen, Germany.
| | - Sonja Herres-Pawlis
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1a, 52074 Aachen, Germany.
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5
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Gonzalvez MA, Gundry L, Garcia-Quintana L, Guo SX, Bond AM, Zhang J. Understanding the Decamethylferrocene Fe III/IV Oxidation Process in Tris(pentafluoroethyl)trifluorophosphate-Containing Ionic Liquids at Glassy Carbon and Boron-Doped Diamond Electrodes. Inorg Chem 2024; 63:14103-14115. [PMID: 38995387 DOI: 10.1021/acs.inorgchem.4c01932] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/13/2024]
Abstract
Under voltammetric conditions, the neutral decamethylferrocene ([Me10Fc]) to cationic ([Me10Fc]+) FeII/III process is a well-known reversible outer-sphere reaction. A companion cationic [Me10Fc]+ to dicationic [Me10Fc]2+ FeIII/IV process has been reported under direct current (DC) cyclic voltammetric conditions at highly positive potentials in liquid SO2 at low temperatures and in a 1.5:1.0 AlCl3/1-butylpyridinium chloride melt. This study demonstrates that in room-temperature ionic liquids containing the hard to oxidize and hydrophobic tris(pentafluoroethyl)trifluorophosphate anion, the [Me10Fc]+/2+ process can be detected as a quasi-reversible reaction at glassy carbon (GC) and boron-doped diamond (BDD) electrodes. Large amplitude Fourier-transformed alternating current (FT-AC) voltammetry minimizes background current contributions occurring at potentials similar to those of the FeIII/IV process in the second and higher-order harmonics. This enables a straightforward determination of the thermodynamics and kinetics for both the FeII/III and FeIII/IV processes. Unlike the ideal outer-sphere FeII/III process, the parameters of the FeIII/IV process may be impacted by ion-interaction effects. For the faster FeII/III process, heterogeneous rate constants are approximately 10 times smaller at BDD than those at GC electrodes. This electrode dependence is less pronounced for the slower FeIII/IV process. The slower BDD kinetics may be attributed in part to a density of states lower than that at GC.
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Affiliation(s)
- Miguel A Gonzalvez
- School of Chemistry, Monash University, Clayton, Victoria 3800, Australia
| | - Luke Gundry
- School of Chemistry, Monash University, Clayton, Victoria 3800, Australia
| | | | - Si-Xuan Guo
- School of Chemistry, Monash University, Clayton, Victoria 3800, Australia
| | - Alan M Bond
- School of Chemistry, Monash University, Clayton, Victoria 3800, Australia
| | - Jie Zhang
- School of Chemistry, Monash University, Clayton, Victoria 3800, Australia
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6
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Richardson JO. Nonadiabatic Tunneling in Chemical Reactions. J Phys Chem Lett 2024; 15:7387-7397. [PMID: 38995660 DOI: 10.1021/acs.jpclett.4c01098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/13/2024]
Abstract
Quantum tunneling can have a dramatic effect on chemical reaction rates. In nonadiabatic reactions such as electron transfers or spin crossovers, nuclear tunneling effects can be even stronger than for adiabatic proton transfers. Ring-polymer instanton theory enables molecular simulations of tunneling in full dimensionality and has been shown to be far more reliable than commonly used separable approximations. First-principles instanton calculations predict significant nonadiabatic tunneling of heavy atoms even at room temperature and give excellent agreement with experimental measurements for the intersystem crossing of two nitrenes in cryogenic matrix isolation, the spin-forbidden relaxation of photoexcited thiophosgene in the gas phase, and singlet oxygen deactivation in water at ambient conditions. Finally, an outlook of further theoretical developments is discussed.
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Affiliation(s)
- Jeremy O Richardson
- Department of Chemistry and Applied Biosciences, ETH Zurich, 8093 Zurich, Switzerland
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7
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Gao Y, Xie W, Wang B, Schreckenbach G, Govorov AO, Li X, Wang ZM. Observing the Role of Electron Delocalization in Electronic Transport by Incorporating Actinides into Ligated Metal-Chalcogenide Superatoms. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:15023-15030. [PMID: 39007426 DOI: 10.1021/acs.langmuir.4c01345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
Abstract
Since delocalization of electronic states is a prerequisite for exerting unique electron transport properties, early actinides (An) with highly delocalized 5f/6d orbitals are natural candidates. However, given the experimental difficulties of such radioactive compounds and the complex relativistic effects in theoretical studies, understanding the electronic structure and bonding of actinides is underdeveloped on the periodic table. A further challenge is the very complicated electronic structures encountered in the confinement of actinides, as vividly illustrated by the weakly radioactive Th(Thorium)-encapsulated metal chalcogenide clusters, Th@Co6Te8L6 (L = PH3, PMe3, PEt3). Here we report the electronic structure and the electron transport properties of the Th@Co6Te8L6 clusters and compare them with those of the hollow Co6Te8L6 clusters using the nonequilibrium Green's function combined with relativistic density functional theory (NEGF-DFT). We found that the equilibrium conductance in Th@Co6Te8(PH3)6 (0.76 G0) has been greatly improved over that in Co6Te8(PH3)6 (0.03 G0), which has also been verified under an applied different bias voltage. The covalent bonding character between 6d (Th) and 3d (Co) atomic orbitals resulting from steric confinement is the source of the performance enhancement and a most important factor governing the accessibility of such 5f/6d orbitals. The results are of significance to the rapidly developing field of molecular nanoelectronics.
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Affiliation(s)
- Yang Gao
- Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, Sichuan 611731, China
| | - Weiyu Xie
- School of Physics and Optoelectronic Engineering, Hainan University, Haikou 570228, China
| | - Bo Wang
- College of Science, Northeast Electric Power University, No. 169 Changchun Road Jilin City 132012, P. R. China
| | - Georg Schreckenbach
- Department of Chemistry, University of Manitoba, Winnipeg, Manitoba R3T 2N2, Canada
| | - Alexander O Govorov
- Department of Physics and Astronomy, Ohio University, Athens, Ohio 45701, United States
| | - Xiaoan Li
- NHC Key Laboratory of Nuclear Technology Medical Transformation, Mianyang Central Hospital, School of Medicine, University of Electronic Science and Technology of China, Mianyang, Sichuan 621099, China
| | - Zhiming M Wang
- Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, Sichuan 611731, China
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8
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London N, Bu S, Johnson B, Ananth N. Mean-Field Ring Polymer Rates Using a Population Dividing Surface. J Phys Chem A 2024; 128:5730-5739. [PMID: 38976564 DOI: 10.1021/acs.jpca.4c00005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/10/2024]
Abstract
Mean-field ring polymer molecular dynamics offers a computationally efficient method for the simulation of reaction rates in multilevel systems. Previous work has established that, to model a nonadiabatic state-to-state reaction accurately, it is necessary to ensure reactive trajectories form kinked ring polymer configurations at the dividing surface. Building on this idea, we introduce a population difference coordinate and a reactive flux expression modified to only include contributions from kinked configurations. We test the accuracy of the resulting mean-field rate theory on a series of linear vibronic coupling model systems. We demonstrate that this new kMF-RP rate approach is efficient to implement and quantitatively accurate for models over a wide range of driving forces, coupling strengths, and temperatures.
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Affiliation(s)
- Nathan London
- Department of Chemistry, Cornell University, Ithaca, New York 14853, United States
| | - Siyu Bu
- Department of Chemistry, Cornell University, Ithaca, New York 14853, United States
| | - Britta Johnson
- Department of Chemistry, Cornell University, Ithaca, New York 14853, United States
| | - Nandini Ananth
- Department of Chemistry, Cornell University, Ithaca, New York 14853, United States
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9
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Kahali S, Das SK, Kumar R, Gupta K, Kundu R, Bhattacharya B, Nath A, Venkatramani R, Datta A. A water-soluble, cell-permeable Mn(ii) sensor enables visualization of manganese dynamics in live mammalian cells. Chem Sci 2024; 15:10753-10769. [PMID: 39027293 PMCID: PMC11253179 DOI: 10.1039/d4sc00907j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Accepted: 06/12/2024] [Indexed: 07/20/2024] Open
Abstract
Central roles of Mn2+ ions in immunity, brain function, and photosynthesis necessitate probes for tracking this essential metal ion in living systems. However, developing a cell-permeable, fluorescent sensor for selective imaging of Mn2+ ions in the aqueous cellular milieu has remained a challenge. This is because Mn2+ is a weak binder to ligand-scaffolds and Mn2+ ions quench fluorescent dyes leading to turn-off sensors that are not applicable for in vivo imaging. Sensors with a unique combination of Mn2+ selectivity, μM sensitivity, and response in aqueous media are necessary for not only visualizing labile cellular Mn2+ ions live, but also for measuring Mn2+ concentrations in living cells. No sensor has achieved this combination thus far. Here we report a novel, completely water-soluble, reversible, fluorescent turn-on, Mn2+ selective sensor, M4, with a K d of 1.4 μM for Mn2+ ions. M4 entered cells within 15 min of direct incubation and was applied to image Mn2+ ions in living mammalian cells in both confocal fluorescence intensity and lifetime-based set-ups. The probe was able to visualize Mn2+ dynamics in live cells revealing differential Mn2+ localization and uptake dynamics under pathophysiological versus physiological conditions. In a key experiment, we generated an in-cell Mn2+ response curve for the sensor which allowed the measurement of the endogenous labile Mn2+ concentration in HeLa cells as 1.14 ± 0.15 μM. Thus, our computationally designed, selective, sensitive, and cell-permeable sensor with a 620 nM limit of detection for Mn2+ in water provides the first estimate of endogenous labile Mn2+ levels in mammalian cells.
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Affiliation(s)
- Smitaroopa Kahali
- Department of Chemical Sciences, Tata Institute of Fundamental Research 1 Homi Bhabha Road Mumbai 400005 India
| | - Sujit Kumar Das
- Department of Chemical Sciences, Tata Institute of Fundamental Research 1 Homi Bhabha Road Mumbai 400005 India
| | - Ravinder Kumar
- Department of Chemical Sciences, Tata Institute of Fundamental Research 1 Homi Bhabha Road Mumbai 400005 India
| | - Kunika Gupta
- Department of Chemical Sciences, Tata Institute of Fundamental Research 1 Homi Bhabha Road Mumbai 400005 India
| | - Rajasree Kundu
- Department of Chemical Sciences, Tata Institute of Fundamental Research 1 Homi Bhabha Road Mumbai 400005 India
| | - Baivabi Bhattacharya
- Department of Developmental Biology and Genetics, Indian Institute of Science Bangalore 560012 India
| | - Arnab Nath
- Department of Developmental Biology and Genetics, Indian Institute of Science Bangalore 560012 India
| | - Ravindra Venkatramani
- Department of Chemical Sciences, Tata Institute of Fundamental Research 1 Homi Bhabha Road Mumbai 400005 India
| | - Ankona Datta
- Department of Chemical Sciences, Tata Institute of Fundamental Research 1 Homi Bhabha Road Mumbai 400005 India
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10
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Pitié S, Dappe YJ, Maurel F, Seydou M, Lacroix JC. Marcus Theory and Long-Range Activationless Transport in Molecular Junctions. J Phys Chem Lett 2024; 15:6996-7002. [PMID: 38949503 DOI: 10.1021/acs.jpclett.4c01049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/02/2024]
Abstract
Intrachain transport in molecular junctions (MJs) longer than 5 nm has been modeled within the theoretical framework of Marcus theory. We show that in oligo(bisthienylbenzene)-based MJs, electronic transport involves polarons, localized on three monomers that are close to 4 nm in length. They hop and tunnel between adjacent localized sites with reorganization energies λ close to 400-600 meV and electronic coupling parameters Hab close to λ/2. As a consequence, the activation energy for intrachain transport, given by the equation ΔG* = (λ/4)(1 - 2Hab/λ)2, is close to zero, and transport along the chain is activationless, in agreement with experimental observation. On the contrary, similar calculations on conjugated oligonaphthalenefluoreneimine wires show that Hab is much less than λ/2 and predict that the activation energies for intrachain hopping between adjacent sites, close to λ/4, are ∼115 meV. This work proposes a new perspective for understanding long-range activationless transport in MJs beyond the tunneling regime.
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Affiliation(s)
- Sylvain Pitié
- Université Paris Cité, ITODYS, CNRS UMR 7086, 15 rue Jean-Antoine de Baïf, 75205 Paris Cedex 13, France
| | - Yannick J Dappe
- Université Paris-Saclay, CEA Saclay, SPEC, CNRS UMR 3680, 91191 Gif-sur-Yvette Cedex, France
| | - François Maurel
- Université Paris Cité, ITODYS, CNRS UMR 7086, 15 rue Jean-Antoine de Baïf, 75205 Paris Cedex 13, France
| | - Mahamadou Seydou
- Université Paris Cité, ITODYS, CNRS UMR 7086, 15 rue Jean-Antoine de Baïf, 75205 Paris Cedex 13, France
| | - Jean-Christophe Lacroix
- Université Paris Cité, ITODYS, CNRS UMR 7086, 15 rue Jean-Antoine de Baïf, 75205 Paris Cedex 13, France
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11
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Fay TP. Extending non-adiabatic rate theory to strong electronic couplings in the Marcus inverted regime. J Chem Phys 2024; 161:014101. [PMID: 38949594 DOI: 10.1063/5.0218653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Accepted: 06/12/2024] [Indexed: 07/02/2024] Open
Abstract
Electron transfer reactions play an essential role in many chemical and biological processes. Fermi's golden rule (GR), which assumes that the coupling between electronic states is small, has formed the foundation of electron transfer rate theory; however, in short range electron/energy transfer reactions, this coupling can become very large, and, therefore, Fermi's GR fails to make even qualitatively accurate rate predictions. In this paper, I present a simple modified GR theory to describe electron transfer in the Marcus inverted regime at arbitrarily large electronic coupling strengths. This theory is based on an optimal global rotation of the diabatic states, which makes it compatible with existing methods for calculating GR rates that can account for nuclear quantum effects with anharmonic potentials. Furthermore, the optimal GR (OGR) theory can also be combined with analytic theories for non-adiabatic rates, such as Marcus theory and Marcus-Levich-Jortner theory, offering clear physical insights into strong electronic coupling effects in non-adiabatic processes. OGR theory is also tested on a large set of spin-boson models and an anharmonic model against exact quantum dynamics calculations, where it performs well, correctly predicting rate turnover at large coupling strengths. Finally, an example application to a boron-dipyrromethane-anthracene photosensitizer reveals that strong coupling effects inhibit excited state charge recombination in this system, reducing the rate of this process by a factor of 4. Overall, OGR theory offers a new approach to calculating electron transfer rates at strong couplings, offering new physical insights into a range of non-adiabatic processes.
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Affiliation(s)
- Thomas P Fay
- Institut de Chimie Radicalaire, Aix-Marseille Université, Campus de Saint-Jérôme, Av. Esc. Normandie Niemen, 13397 Marseille, France
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12
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Aldossary A, Campos-Gonzalez-Angulo JA, Pablo-García S, Leong SX, Rajaonson EM, Thiede L, Tom G, Wang A, Avagliano D, Aspuru-Guzik A. In Silico Chemical Experiments in the Age of AI: From Quantum Chemistry to Machine Learning and Back. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024; 36:e2402369. [PMID: 38794859 DOI: 10.1002/adma.202402369] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Revised: 04/28/2024] [Indexed: 05/26/2024]
Abstract
Computational chemistry is an indispensable tool for understanding molecules and predicting chemical properties. However, traditional computational methods face significant challenges due to the difficulty of solving the Schrödinger equations and the increasing computational cost with the size of the molecular system. In response, there has been a surge of interest in leveraging artificial intelligence (AI) and machine learning (ML) techniques to in silico experiments. Integrating AI and ML into computational chemistry increases the scalability and speed of the exploration of chemical space. However, challenges remain, particularly regarding the reproducibility and transferability of ML models. This review highlights the evolution of ML in learning from, complementing, or replacing traditional computational chemistry for energy and property predictions. Starting from models trained entirely on numerical data, a journey set forth toward the ideal model incorporating or learning the physical laws of quantum mechanics. This paper also reviews existing computational methods and ML models and their intertwining, outlines a roadmap for future research, and identifies areas for improvement and innovation. Ultimately, the goal is to develop AI architectures capable of predicting accurate and transferable solutions to the Schrödinger equation, thereby revolutionizing in silico experiments within chemistry and materials science.
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Affiliation(s)
- Abdulrahman Aldossary
- Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, M5S 3H6, Canada
| | | | - Sergio Pablo-García
- Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, M5S 3H6, Canada
- Department of Computer Science, University of Toronto, 40 St. George Street, Toronto, ON, M5S 2E4, Canada
| | - Shi Xuan Leong
- Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, M5S 3H6, Canada
| | - Ella Miray Rajaonson
- Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, M5S 3H6, Canada
- Vector Institute for Artificial Intelligence, 661 University Ave. Suite 710, Toronto, ON, M5G 1M1, Canada
| | - Luca Thiede
- Department of Computer Science, University of Toronto, 40 St. George Street, Toronto, ON, M5S 2E4, Canada
- Vector Institute for Artificial Intelligence, 661 University Ave. Suite 710, Toronto, ON, M5G 1M1, Canada
| | - Gary Tom
- Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, M5S 3H6, Canada
- Vector Institute for Artificial Intelligence, 661 University Ave. Suite 710, Toronto, ON, M5G 1M1, Canada
| | - Andrew Wang
- Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, M5S 3H6, Canada
| | - Davide Avagliano
- Chimie ParisTech, PSL University, CNRS, Institute of Chemistry for Life and Health Sciences (iCLeHS UMR 8060), Paris, F-75005, France
| | - Alán Aspuru-Guzik
- Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, M5S 3H6, Canada
- Department of Computer Science, University of Toronto, 40 St. George Street, Toronto, ON, M5S 2E4, Canada
- Vector Institute for Artificial Intelligence, 661 University Ave. Suite 710, Toronto, ON, M5G 1M1, Canada
- Department of Materials Science & Engineering, University of Toronto, 184 College St., Toronto, ON, M5S 3E4, Canada
- Department of Chemical Engineering & Applied Chemistry, University of Toronto, 200 College St., Toronto, ON, M5S 3E5, Canada
- Lebovic Fellow, Canadian Institute for Advanced Research (CIFAR), 66118 University Ave., Toronto, M5G 1M1, Canada
- Acceleration Consortium, 80 St George St, Toronto, M5S 3H6, Canada
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13
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Panigrahi A, Mishra L, Dubey P, Dutta S, Mondal S, Sarangi MK. Interplay between photoinduced charge and energy transfer in manganese doped perovskite quantum dots. J Chem Phys 2024; 160:244702. [PMID: 38912633 DOI: 10.1063/5.0205610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Accepted: 06/04/2024] [Indexed: 06/25/2024] Open
Abstract
A comprehensive study on the photo-excited relaxation dynamics in semiconducting perovskite quantum dots (PQDs) is pivotal in realizing their extensive potential for optoelectronics applications. Among different competing photoinduced relaxation kinetics, energy transfer and charge transfer (CT) in PQDs need special attention, as they often influence the device efficacy, particularly with the donor-acceptor hybrid architecture. In this work, we explore a detailed investigation into photoinduced CT dynamics in mixed halide undoped CsPb(Br/Cl)3 and Mn2+ doped CsPb(Br/Cl)3 PQDs with a quinone molecule, p-benzoquinone (BQ). The energy level alignment of undoped PQDs with BQ allows an efficient CT, whereas Mn2+ doping reduces the CT efficiency, experiencing a competition between energy transfer from host to dopant and CT to BQ. The conductive atomic force microscopy measurements unveil a direct correlation with the spectroscopic studies by showing a significant improvement in the conductance of undoped PQDs in the presence of BQ, while an inappreciable change is observed for doped PQDs. A much-reduced transition voltage and barrier height in the presence of BQ further validate faster CT for undoped PQD than the doped one. Furthermore, Mn2+ doping in PQDs is observed to enhance their stability, showing better air and thermal stability compared to their undoped counterparts. These results reveal that doping strategy can regulate the CT dynamics in these PQDs and increase their stability, which will be beneficial for the development of desired optoelectronic devices with long-term stability.
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Affiliation(s)
- Aradhana Panigrahi
- Department of Physics, Indian Institute of Technology, Patna 801106, India
| | - Leepsa Mishra
- Department of Physics, Indian Institute of Technology, Patna 801106, India
| | - Priyanka Dubey
- Department of Physics, Indian Institute of Technology, Patna 801106, India
| | - Soumi Dutta
- Department of Physics, Indian Institute of Technology, Patna 801106, India
| | - Sankalan Mondal
- Department of Physics, Indian Institute of Technology, Patna 801106, India
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14
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Alessandri R, Li CH, Keating S, Mohanty KT, Peng A, Lutkenhaus JL, Rowan SJ, Tabor DP, de Pablo JJ. Structural, Ionic, and Electronic Properties of Solid-State Phthalimide-Containing Polymers for All-Organic Batteries. JACS AU 2024; 4:2300-2311. [PMID: 38938799 PMCID: PMC11200234 DOI: 10.1021/jacsau.4c00276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Revised: 05/13/2024] [Accepted: 05/17/2024] [Indexed: 06/29/2024]
Abstract
Redox-active polymers serving as the active materials in solid-state electrodes offer a promising path toward realizing all-organic batteries. While both cathodic and anodic redox-active polymers are needed, the diversity of the available anodic materials is limited. Here, we predict solid-state structural, ionic, and electronic properties of anodic, phthalimide-containing polymers using a multiscale approach that combines atomistic molecular dynamics, electronic structure calculations, and machine learning surrogate models. Importantly, by combining information from each of these scales, we are able to bridge the gap between bottom-up molecular characteristics and macroscopic properties such as apparent diffusion coefficients of electron transport (D app). We investigate the impact of different polymer backbones and of two critical factors during battery operation: state of charge and polymer swelling. Our findings reveal that the state of charge significantly influences solid-state packing and the thermophysical properties of the polymers, which, in turn, affect ionic and electronic transport. A combination of molecular-level properties (such as the reorganization energy) and condensed-phase properties (such as effective electron hopping distances) determine the predicted ranking of electron transport capabilities of the polymers. We predict D app for the phthalimide-based polymers and for a reference nitroxide radical-based polymer, finding a 3 orders of magnitude increase in D app (≈10-6 cm2 s-1) with respect to the reference. This study underscores the promise of phthalimide-containing polymers as highly capable redox-active polymers for anodic materials in all-organic batteries, due to their exceptional predicted electron transport capabilities.
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Affiliation(s)
- Riccardo Alessandri
- Pritzker
School of Molecular Engineering, University
of Chicago, Chicago, Illinois 60637, United States
| | - Cheng-Han Li
- Department
of Chemistry, Texas A&M University, College Station, Texas 77842, United States
| | - Sheila Keating
- Department
of Chemistry, University of Chicago, Chicago, Illinois 60637, United States
| | - Khirabdhi T. Mohanty
- Artie
McFerrin Department of Chemical Engineering, Texas A&M University, College
Station, Texas 77843, United States
| | - Aaron Peng
- Pritzker
School of Molecular Engineering, University
of Chicago, Chicago, Illinois 60637, United States
| | - Jodie L. Lutkenhaus
- Artie
McFerrin Department of Chemical Engineering and Department of Materials
Science & Engineering, Texas A&M
University, College Station, Texas 77843, United States
| | - Stuart J. Rowan
- Pritzker
School of Molecular Engineering, University
of Chicago, Chicago, Illinois 60637, United States
- Department
of Chemistry, University of Chicago, Chicago, Illinois 60637, United States
| | - Daniel P. Tabor
- Department
of Chemistry, Texas A&M University, College Station, Texas 77842, United States
| | - Juan J. de Pablo
- Pritzker
School of Molecular Engineering, University
of Chicago, Chicago, Illinois 60637, United States
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15
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Spiegel M. Unveiling the Antioxidative Potential of Galangin: Complete and Detailed Mechanistic Insights through Density Functional Theory Studies. J Org Chem 2024; 89:8676-8690. [PMID: 38861646 PMCID: PMC11197094 DOI: 10.1021/acs.joc.4c00611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2024] [Revised: 05/13/2024] [Accepted: 05/21/2024] [Indexed: 06/13/2024]
Abstract
A comprehensive quantum mechanical investigation delved into the antioxidative activity of galangin (Glg). Thermochemical and kinetic data were used to assess antiradical, chelating, and renewal potential under physiological conditions. A brief comparison with reference antioxidants and other flavonoids characterized Glg as a moderate antioxidative agent. The substance showed significantly lower performance in lipid compared to aqueous solvent─the reaction rates for scavenging •OOH in both media were established at 3.77 × 103 M-1 s-1 and 6.21 × 104 M-1 s-1, respectively, accounting for the molar fraction of both interacting molecules at the given pH. The impact of pH value on the kinetics was assessed. Although efficient at chelating Cu(II) ions, the formed complexes can still undergo the Fenton reaction. On the other hand, they persistently scavenge •OH in statu nascendi. The flavonoid effectively repairs oxidatively damaged biomolecules except model lipid acids. All Glg radicals are readily restored by physiologically prevailing O2•-. Given this, the polyphenol is expected to participate in antiradical and regenerating activities multiple times, amplifying its antioxidative potential.
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Affiliation(s)
- Maciej Spiegel
- Department of Organic Chemistry and
Pharmaceutical Technology, Faculty of Pharmacy, Wroclaw Medical University, Borowska 211A, 50-556 Wroclaw, Poland
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16
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Majid A, Raza NZ, Haider S, Alam K, Naeem S. Electronic Transport Properties of Molecular Clusters Sb 4O 6, P 4Se 3, and P 4O 6. J Phys Chem A 2024; 128:4814-4822. [PMID: 38857364 DOI: 10.1021/acs.jpca.4c02757] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2024]
Abstract
Inorganic molecular crystal (IMC) is a trending class of materials in which structural units comprise molecular cages or clusters bonded via van der Waal forces. The structure-property relationship in IMCs is less known due to the unusual assembly of molecular clusters in these materials. In this paper, the density functional theory-calculated electronic transport properties of the molecular clusters of antimony oxide (Sb4O6), phosphorus triselenide (P4Se3), and phosphorus trioxide (P4O6) are described in detail. The calculated values of highest occupied molecular orbital-lowest unoccupied molecular orbital gaps appeared as 5.487, 2.296, and 4.425 eV for Sb4O6, P4Se3, and P4O6, respectively. The work was carried out to explore the charge transport mechanism in IMCs in order to disclose their potential in practical applications. The calculations involved charge-transfer integral based on Marcus theory to compute the electronic coupling (V), reorganization energies (λ), and hopping rate (k) in the structures. The hopping rate for Sb4O6, P4Se3, and P4O6 is found as 8.49 × 10-12, 1.28 × 10-14, and 2.51 × 10-20 s-1, respectively. The transport properties of Sb4O6 are found better, which predicts the application of the relevant IMC for device grade applications. The findings of this study are important for future application of the IMCs in electronic and optoelectronic applications.
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Affiliation(s)
- Abdul Majid
- Department of Physics, University of Gujrat, Gujrat 50700, Pakistan
| | - Nimra Zaib Raza
- Department of Physics, University of Gujrat, Gujrat 50700, Pakistan
| | - Sajjad Haider
- Chemical Engineering Department, College of Engineering, King Saud University, P.O.Box 800, Riyadh 11421, Saudi Arabia
| | - Kamran Alam
- Department of Chemical Engineering Materials Environment Sapienza, University of Rome, Roma RM 00185, Italy
| | - Samia Naeem
- Department of Physics, Government College Women University Sialkot, Sialkot 51310, Pakistan
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17
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Moradpour B, Omidyan R. Photophysical properties of Pt(ii) complexes based on the benzoquinoline (bzq) ligand with OLED implication: a theoretical study. RSC Adv 2024; 14:20278-20289. [PMID: 38919282 PMCID: PMC11197014 DOI: 10.1039/d4ra03334e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2024] [Accepted: 06/12/2024] [Indexed: 06/27/2024] Open
Abstract
In this study, we investigate photophysical properties of eight inorganic Pt(ii) complexes containing the bzq (benzoquinoline) ligand for OLED applications using high-level density functional theory (DFT) and time-dependent density functional theory (TD-DFT) calculations. We explore the radiative and non-radiative relaxation constants (k r, k nr), spin-orbit coupling (SOC) matrix elements, and spectral properties. To ensure compatibility between the host and guest compounds, we determine the HOMO and LUMO energy levels, as well as the triplet excitation energies of the selected systems, and evaluate their efficiency for OLED devices. Our findings indicate that all systems, except for 2a and 2b, exhibit a small S1-T1 energetic gap (ΔE ≤ 0.60 eV) and promising SOC matrix elements (25-93 cm-1), leading to a significant intersystem crossing (ISC) process. These complexes also show promising radiative relaxation rates (k r = ∼10-4 s-1) and high phosphorescent quantum yields (Φ > 30%). Thus, our results confirm that six out of the eight selected Pt(ii) complexes are promising candidates for use in the emitting layer (EML) of OLED devices as efficient green emitters.
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Affiliation(s)
- Batool Moradpour
- Department of Chemistry, University of Isfahan 81746-73441 Isfahan Iran +98 31 3668 9732
| | - Reza Omidyan
- Department of Chemistry, University of Isfahan 81746-73441 Isfahan Iran +98 31 3668 9732
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18
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Sun M, Zhou P, Meng S, Zhang P, Sun Y, Zhou C, Su S, He CS, Liu Y, Zhang H, Xiong Z, Lai B. New Insights into Photo-Fenton Chemistry: The Overlooked Role of Excited Iron III Species. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:10817-10827. [PMID: 38832598 DOI: 10.1021/acs.est.4c00472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2024]
Abstract
Direct photoreduction of FeIII is a widely recognized route for accelerating FeIII/FeII cycle in photo-Fenton chemistry. However, most of the wavelengths covering the full spectral range are insufficient to supply enough photon energy for the direct reduction process. Herein, the hitherto neglected mechanism of FeIII reduction that the FeIII indirect reduction pathway initiated by light energy-dependent reactivity variation and reactive excited state (ES) was explored. Evolution of excited-state FeIII species (*FeIII) resulting from metal-centered charge excitation (MCCE) of FeIII is experimentally verified using pulsed laser femtosecond transient absorption spectroscopy with UV-vis detection and theoretically verified by quantum chemical calculation. Intense photoinduced intravalence charge transition was observed at λ = 380 and 466 nm, revealing quartet 4MCCE and doublet 2MCCE and their exponential processes. Light energy-dependent variation of *FeIII reactivity was kinetically certified by fitting the apparent rate constant of the radical-chain sequence of photo-Fenton reactions. Covalency is found to compensate for the intravalence charge separation following photoexcitation of the metal center in the MCCE state of Fenton photosensitizer. The *FeIII is established as a model, demonstrating the intravalence hole delocalization in the ES can be leveraged for photo-Fenton reaction or other photocatalytic schemes based on electron transfer chemistry.
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Affiliation(s)
- Minglu Sun
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Architecture and Environment, Sichuan University, Chengdu 610065, China
- Sino-German Centre for Water and Health Research, Sichuan University, Chengdu 610065, China
| | - Peng Zhou
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Architecture and Environment, Sichuan University, Chengdu 610065, China
- Sino-German Centre for Water and Health Research, Sichuan University, Chengdu 610065, China
| | - Shuang Meng
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Architecture and Environment, Sichuan University, Chengdu 610065, China
- Sino-German Centre for Water and Health Research, Sichuan University, Chengdu 610065, China
| | - Peng Zhang
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Architecture and Environment, Sichuan University, Chengdu 610065, China
- Sino-German Centre for Water and Health Research, Sichuan University, Chengdu 610065, China
| | - Yiming Sun
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Architecture and Environment, Sichuan University, Chengdu 610065, China
- Sino-German Centre for Water and Health Research, Sichuan University, Chengdu 610065, China
| | - Chenying Zhou
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Architecture and Environment, Sichuan University, Chengdu 610065, China
- Sino-German Centre for Water and Health Research, Sichuan University, Chengdu 610065, China
| | - Shijun Su
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Architecture and Environment, Sichuan University, Chengdu 610065, China
| | - Chuan-Shu He
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Architecture and Environment, Sichuan University, Chengdu 610065, China
- Sino-German Centre for Water and Health Research, Sichuan University, Chengdu 610065, China
| | - Yang Liu
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Architecture and Environment, Sichuan University, Chengdu 610065, China
- Sino-German Centre for Water and Health Research, Sichuan University, Chengdu 610065, China
| | - Heng Zhang
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Architecture and Environment, Sichuan University, Chengdu 610065, China
- Sino-German Centre for Water and Health Research, Sichuan University, Chengdu 610065, China
| | - Zhaokun Xiong
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Architecture and Environment, Sichuan University, Chengdu 610065, China
- Sino-German Centre for Water and Health Research, Sichuan University, Chengdu 610065, China
| | - Bo Lai
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Architecture and Environment, Sichuan University, Chengdu 610065, China
- Sino-German Centre for Water and Health Research, Sichuan University, Chengdu 610065, China
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19
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Kuan KY, Yeh SH, Yang W, Hsu CP. Excited-State Charge Transfer Coupling from Quasiparticle Energy Density Functional Theory. J Phys Chem Lett 2024; 15:6126-6136. [PMID: 38830203 PMCID: PMC11181311 DOI: 10.1021/acs.jpclett.4c00850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 04/29/2024] [Accepted: 04/30/2024] [Indexed: 06/05/2024]
Abstract
The recently developed Quasiparticle Energy (QE) scheme, based on a DFT calculation with one more (or less) electron, offers a good description of excitation energies, even with charge transfer characters. In this work, QE is further extended to calculate electron transfer (ET) couplings involving two excited states. We tested it with a donor-acceptor complex, consisting of a furan and a 1,1-dicyanoethylene (DCNE), in which two low lying charge transfer and local excitation states are involved. With generalized Mülliken-Hush and fragment charge-difference schemes, couplings from the QE approach generally agree well with those obtained from TDDFT, except that QE couplings exhibit better exponential distance dependence. Couplings from half-energy gaps with an external field are also calculated and reported. Our results show that the QE scheme is robust in calculating ET couplings with greatly reduced computational time.
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Affiliation(s)
- Kai-Yuan Kuan
- Institute
of Chemistry, Academia Sinica, 128 Academia Road, Section 2, Nankang
District, Taipei 11529, Taiwan
| | - Shu-Hao Yeh
- Institute
of Chemistry, Academia Sinica, 128 Academia Road, Section 2, Nankang
District, Taipei 11529, Taiwan
- Department
of Chemistry, National Taiwan University, 1 Roosevelt Rd, Section 4, Da’an
District, Taipei City 10617, Taiwan
| | - Weitao Yang
- Department
of Chemistry, Duke University, Durham, North Carolina 27708, United States
| | - Chao-Ping Hsu
- Institute
of Chemistry, Academia Sinica, 128 Academia Road, Section 2, Nankang
District, Taipei 11529, Taiwan
- Division
of Physics, National Center for Theoretical
Sciences, 1 Roosevelt
Road, Section 4, Taipei City 10617, Taiwan
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20
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Bjurström A, Edin H, Hillborg H, Nilsson F, Olsson RT, Pierre M, Unge M, Hedenqvist MS. A Review of Polyolefin-Insulation Materials in High Voltage Transmission; From Electronic Structures to Final Products. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024:e2401464. [PMID: 38870339 DOI: 10.1002/adma.202401464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2024] [Revised: 05/30/2024] [Indexed: 06/15/2024]
Abstract
This review focuses on the use of polyolefins in high-voltage direct-current (HVDC) cables and capacitors. A short description of the latest evolution and current use of HVDC cables and capacitors is first provided, followed by the basics of electric insulation and capacitor functions. Methods to determine dielectric properties are described, including charge transport, space charges, resistivity, dielectric loss, and breakdown strength. The semicrystalline structure of polyethylene and isotactic polypropylene is described, and the way it relates to the dielectric properties is discussed. A significant part of the review is devoted to describing the state of art of the modeling and prediction of electric or dielectric properties of polyolefins with consideration of both atomistic and continuum approaches. Furthermore, the effects of the purity of the materials and the presence of nanoparticles are presented, and the review ends with the sustainability aspects of these materials. In summary, the effective use of modeling in combination with experimental work is described as an important route toward understanding and designing the next generations of materials for electrical insulation in high-voltage transmission.
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Affiliation(s)
- Anton Bjurström
- Department of Fibre and Polymer Technology, Polymeric Materials Division, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, SE-100 44, Sweden
- NKT HV Cables, Technology Consulting, Västerås, SE-721 78, Sweden
- Wallenberg Initiative Materials Science for Sustainability, Department of Fibre and Polymer Technology, KTH Royal Institute of Technology, Stockholm, SE-100 44, Sweden
| | - Hans Edin
- Department of Electrical Engineering, Division of Electromagnetic Engineering and Fusion Science, School of Electrical Engineering and Computer Science, KTH Royal Institute of Technology, Stockholm, SE-100 44, Sweden
| | - Henrik Hillborg
- Department of Fibre and Polymer Technology, Polymeric Materials Division, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, SE-100 44, Sweden
- Hitachi Energy Research, Västerås, SE-721 78, Sweden
| | - Fritjof Nilsson
- Department of Fibre and Polymer Technology, Polymeric Materials Division, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, SE-100 44, Sweden
- FSCN Research Centre, Mid Sweden University, Sundsvall, SE-851 70, Sweden
| | - Richard T Olsson
- Department of Fibre and Polymer Technology, Polymeric Materials Division, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, SE-100 44, Sweden
- Wallenberg Initiative Materials Science for Sustainability, Department of Fibre and Polymer Technology, KTH Royal Institute of Technology, Stockholm, SE-100 44, Sweden
| | - Max Pierre
- Department of Fibre and Polymer Technology, Polymeric Materials Division, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, SE-100 44, Sweden
| | - Mikael Unge
- Department of Fibre and Polymer Technology, Polymeric Materials Division, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, SE-100 44, Sweden
- NKT HV Cables, Technology Consulting, Västerås, SE-721 78, Sweden
- Wallenberg Initiative Materials Science for Sustainability, Department of Fibre and Polymer Technology, KTH Royal Institute of Technology, Stockholm, SE-100 44, Sweden
| | - Mikael S Hedenqvist
- Department of Fibre and Polymer Technology, Polymeric Materials Division, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, SE-100 44, Sweden
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21
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Goodwin MJ, Dickenson JC, Ripak A, Deetz AM, McCarthy JS, Meyer GJ, Troian-Gautier L. Factors that Impact Photochemical Cage Escape Yields. Chem Rev 2024; 124:7379-7464. [PMID: 38743869 DOI: 10.1021/acs.chemrev.3c00930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2024]
Abstract
The utilization of visible light to mediate chemical reactions in fluid solutions has applications that range from solar fuel production to medicine and organic synthesis. These reactions are typically initiated by electron transfer between a photoexcited dye molecule (a photosensitizer) and a redox-active quencher to yield radical pairs that are intimately associated within a solvent cage. Many of these radicals undergo rapid thermodynamically favored "geminate" recombination and do not diffuse out of the solvent cage that surrounds them. Those that do escape the cage are useful reagents that may undergo subsequent reactions important to the above-mentioned applications. The cage escape process and the factors that determine the yields remain poorly understood despite decades of research motivated by their practical and fundamental importance. Herein, state-of-the-art research on light-induced electron transfer and cage escape that has appeared since the seminal 1972 review by J. P. Lorand entitled "The Cage Effect" is reviewed. This review also provides some background for those new to the field and discusses the cage escape process of both homolytic bond photodissociation and bimolecular light induced electron transfer reactions. The review concludes with some key goals and directions for future research that promise to elevate this very vibrant field to even greater heights.
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Affiliation(s)
- Matthew J Goodwin
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - John C Dickenson
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Alexia Ripak
- Université catholique de Louvain (UCLouvain), Institut de la Matière Condensée et des Nanosciences (IMCN), Molecular Chemistry, Materials and Catalysis (MOST), Place Louis Pasteur 1, bte L4.01.02, 1348 Louvain-la-Neuve, Belgium
| | - Alexander M Deetz
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Jackson S McCarthy
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Gerald J Meyer
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Ludovic Troian-Gautier
- Université catholique de Louvain (UCLouvain), Institut de la Matière Condensée et des Nanosciences (IMCN), Molecular Chemistry, Materials and Catalysis (MOST), Place Louis Pasteur 1, bte L4.01.02, 1348 Louvain-la-Neuve, Belgium
- Wel Research Institute, Avenue Pasteur 6, 1300 Wavre, Belgium
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22
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Gutiérrez-Vílchez AM, Ileperuma CV, Navarro-Pérez V, Karr PA, Fernández-Lázaro F, D'Souza F. Excited Charge Transfer Promoted Electron Transfer in all Perylenediimide Derived, Wide-Band Capturing Conjugates: A Mimicry of the Early Events of Natural Photosynthesis. Chempluschem 2024:e202400348. [PMID: 38856517 DOI: 10.1002/cplu.202400348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2024] [Revised: 06/06/2024] [Accepted: 06/10/2024] [Indexed: 06/11/2024]
Abstract
Fundamental discoveries in electron transfer advance scientific and technological advancements. It is suggested that in plant and bacterial photosynthesis, the primary donor, a chlorophyll or bacteriochlorophyll dimer, forms an initial excited symmetry-breaking charge transfer state (1CT*) upon photoexcitation that subsequently promotes sequential electron transfer (ET) events. This is unlike monomeric photosensitizer-bearing donor-acceptor dyads where ET occurs from the excited donor or acceptor (1D* or 1A*). In the present study, we successfully demonstrated the former photochemical event using an excited charge transfer molecule as a donor. Electron-deficient perylenediimide (PDI) is functionalized with three electron-rich piperidine entities at the bay positions, resulting in a far-red emitting CT molecule (DCT). Further, this molecule is covalently linked to another PDI (APDI) carrying no substituents at the bay positions, resulting in wide-band capturing DCT-APDI conjugates. Selective excitation of the CT band of DCT in these conjugates leads to an initial 1DCT* that undergoes subsequent ET involving APDI, resulting in DCT +-APDI - charge separation product (kCS~109 s-1). Conversely, when APDI was directly excited, ultrafast energy transfer (ENT) from 1APDI* to DCT (kENT~1011 s-1) followed by ET from 1DCT* to PDI is witnessed. While increasing solvent polarity improved kCS rates, for a given solvent, the magnitude of the kCS values was almost the same, irrespective of the excitation wavelengths. The present findings demonstrate ET from an initial CT state to an acceptor is key to understanding the intricate ET events in complex natural and bacterial photosynthetic systems possessing multiple redox- and photoactive entities.
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Affiliation(s)
- Ana M Gutiérrez-Vílchez
- División de Química Orgánica, Instituto de Bioingeniería, Universidad Miguel Hernández, Avda. de la Universidad s/n, 03203, Elche, Spain
| | - Chamari V Ileperuma
- Department of Chemistry, University of North Texas at Denton, 1155 Union Circle, #305070, Denton, TX 76203-5017, USA
| | - Valeria Navarro-Pérez
- División de Química Orgánica, Instituto de Bioingeniería, Universidad Miguel Hernández, Avda. de la Universidad s/n, 03203, Elche, Spain
| | - Paul A Karr
- Department of Physical Sciences and Mathematics, Wayne State College, 111 Main Street, Wayne, Nebraska, 68787, USA
| | - Fernando Fernández-Lázaro
- División de Química Orgánica, Instituto de Bioingeniería, Universidad Miguel Hernández, Avda. de la Universidad s/n, 03203, Elche, Spain
| | - Francis D'Souza
- Department of Chemistry, University of North Texas at Denton, 1155 Union Circle, #305070, Denton, TX 76203-5017, USA
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23
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Sutcliffe E, Cagan DA, Hadt RG. Ultrafast Photophysics of Ni(I)-Bipyridine Halide Complexes: Spanning the Marcus Normal and Inverted Regimes. J Am Chem Soc 2024; 146:15506-15514. [PMID: 38776490 PMCID: PMC11157544 DOI: 10.1021/jacs.4c04091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Revised: 05/09/2024] [Accepted: 05/13/2024] [Indexed: 05/25/2024]
Abstract
Owing to their light-harvesting properties, nickel-bipyridine (bpy) complexes have found wide use in metallaphotoredox cross-coupling reactions. Key to these transformations are Ni(I)-bpy halide intermediates that absorb a significant fraction of light at relevant cross-coupling reaction irradiation wavelengths. Herein, we report ultrafast transient absorption (TA) spectroscopy on a library of eight Ni(I)-bpy halide complexes, the first such characterization of any Ni(I) species. The TA data reveal the formation and decay of Ni(I)-to-bpy metal-to-ligand charge transfer (MLCT) excited states (10-30 ps) whose relaxation dynamics are well described by vibronic Marcus theory, spanning the normal and inverted regions as a result of simple changes to the bpy substituents. While these lifetimes are relatively long for MLCT excited states in first-row transition metal complexes, their duration precludes excited-state bimolecular reactivity in photoredox reactions. We also present a one-step method to generate an isolable, solid-state Ni(I)-bpy halide species, which decouples light-initiated reactivity from dark, thermal cycles in catalysis.
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Affiliation(s)
| | | | - Ryan G. Hadt
- Division of Chemistry and
Chemical Engineering, Arthur Amos Noyes Laboratory of Chemical Physics, California Institute of Technology, Pasadena, California 91125, United States
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24
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Kisgeropoulos EC, Artz JH, Blahut M, Peters JW, King PW, Mulder DW. Properties of the iron-sulfur cluster electron transfer relay in an [FeFe]-hydrogenase that is tuned for H 2 oxidation catalysis. J Biol Chem 2024; 300:107292. [PMID: 38636659 PMCID: PMC11126806 DOI: 10.1016/j.jbc.2024.107292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 04/09/2024] [Accepted: 04/11/2024] [Indexed: 04/20/2024] Open
Abstract
[FeFe]-hydrogenases catalyze the reversible oxidation of H2 from electrons and protons at an organometallic active site cofactor named the H-cluster. In addition to the H-cluster, most [FeFe]-hydrogenases possess accessory FeS cluster (F-cluster) relays that function in mediating electron transfer with catalysis. There is significant variation in the structural properties of F-cluster relays among the [FeFe]-hydrogenases; however, it is unknown how this variation relates to the electronic and thermodynamic properties, and thus the electron transfer properties, of enzymes. Clostridium pasteurianum [FeFe]-hydrogenase II (CpII) exhibits a large catalytic bias for H2 oxidation (compared to H2 production), making it a notable system for examining if F-cluster properties contribute to the overall function and efficiency of the enzyme. By applying a combination of multifrequency and potentiometric electron paramagnetic resonance, we resolved two electron paramagnetic resonance signals with distinct power- and temperature-dependent properties at g = 2.058 1.931 1.891 (F2.058) and g = 2.061 1.920 1.887 (F2.061), with assigned midpoint potentials of -140 ± 18 mV and -406 ± 12 mV versus normal hydrogen electrode, respectively. Spectral analysis revealed features consistent with spin-spin coupling between the two [4Fe-4S] F-clusters, and possible functional models are discussed that account for the contribution of coupling to the electron transfer landscape. The results signify the interplay of electronic coupling and free energy properties and parameters of the FeS clusters to the electron transfer mechanism through the relay and provide new insight as to how relays functionally complement the catalytic directionality of active sites to achieve highly efficient catalysis.
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Affiliation(s)
| | - Jacob H Artz
- Biosciences Center, National Renewable Energy Laboratory, Golden, Colorado, USA
| | - Matthew Blahut
- Biosciences Center, National Renewable Energy Laboratory, Golden, Colorado, USA
| | - John W Peters
- Department of Chemistry and Biochemistry, The University of Oklahoma, Norman, Oklahoma, USA
| | - Paul W King
- Biosciences Center, National Renewable Energy Laboratory, Golden, Colorado, USA; Renewable and Sustainable Energy Institute, National Renewable Energy Laboratory and University of Colorado Boulder, Boulder, Colorado, USA
| | - David W Mulder
- Biosciences Center, National Renewable Energy Laboratory, Golden, Colorado, USA.
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25
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Song Y, Gao Y, Fang H. Unexpected large charge transfer rate mediated by adenine in twisted DNA structure. Phys Rev E 2024; 109:064412. [PMID: 39020924 DOI: 10.1103/physreve.109.064412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Accepted: 04/15/2024] [Indexed: 07/20/2024]
Abstract
DNA exhibits remarkable charge transfer ability, which is crucial for its biological functions and potential electronic applications. The charge transfer process in DNA is widely recognized as primarily mediated by guanine, while the contribution of other nucleobases is negligible. Using the tight-binding models in conjunction with first-principles calculations, we investigated the charge transfer behavior of homogeneous GC and AT pairs. We found that the charge transfer rate of adenine significantly changes. With overstretching, the charge transfer rate of adenine can even surpass that of guanine, by as much as five orders of magnitude at a twist angle of around 26°. Further analysis reveals that it is attributed to the turnover of the relative coupling strength between homogeneous GC and AT base pairs, which is caused by the symmetry exchange between the two highest occupied molecular orbitals of base pairs occurring at different twist angles. Given the high degree of flexibility of DNA in vivo and in vitro conditions, these findings prompt us to reconsider the mechanism of biological functions concerning the charge transfer in DNA molecules and further open the potential of DNA as a biomaterial for electronic applications.
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26
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Trukhanov VA, Sosorev AY, Dominskiy DI, Fedorenko RS, Tafeenko VA, Borshchev OV, Ponomarenko SA, Paraschuk DY. Dual Optoelectronic Organic Field-Effect Device: Combination of Electroluminescence and Photosensitivity. Molecules 2024; 29:2533. [PMID: 38893409 PMCID: PMC11173939 DOI: 10.3390/molecules29112533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2024] [Revised: 05/12/2024] [Accepted: 05/23/2024] [Indexed: 06/21/2024] Open
Abstract
Merging the functionality of an organic field-effect transistor (OFET) with either a light emission or a photoelectric effect can increase the efficiency of displays or photosensing devices. In this work, we show that an organic semiconductor enables a multifunctional OFET combining electroluminescence (EL) and a photoelectric effect. Specifically, our computational and experimental investigations of a six-ring thiophene-phenylene co-oligomer (TPCO) revealed that this material is promising for OFETs, light-emitting, and photoelectric devices because of the large oscillator strength of the lowest-energy singlet transition, efficient luminescence, pronounced delocalization of the excited state, and balanced charge transport. The fabricated OFETs showed a photoelectric response for wavelengths shorter than 530 nm and simultaneously EL in the transistor channel, with a maximum at ~570 nm. The devices demonstrated an EL external quantum efficiency (EQE) of ~1.4% and a photoelectric responsivity of ~0.7 A W-1, which are among the best values reported for state-of-the-art organic light-emitting transistors and phototransistors, respectively. We anticipate that our results will stimulate the design of efficient materials for multifunctional organic optoelectronic devices and expand the potential applications of organic (opto)electronics.
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Affiliation(s)
- Vasiliy A. Trukhanov
- Faculty of Physics, Lomonosov Moscow State University, Leninskie Gory 1/62, Moscow 119991, Russia
| | - Andrey Y. Sosorev
- Faculty of Physics, Lomonosov Moscow State University, Leninskie Gory 1/62, Moscow 119991, Russia
- Enikolopov Institute of Synthetic Polymeric Materials, Russian Academy of Science, Profsoyuznaya 70, Moscow 117393, Russia
| | - Dmitry I. Dominskiy
- Faculty of Physics, Lomonosov Moscow State University, Leninskie Gory 1/62, Moscow 119991, Russia
- Enikolopov Institute of Synthetic Polymeric Materials, Russian Academy of Science, Profsoyuznaya 70, Moscow 117393, Russia
| | - Roman S. Fedorenko
- Faculty of Physics, Lomonosov Moscow State University, Leninskie Gory 1/62, Moscow 119991, Russia
| | - Victor A. Tafeenko
- Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory 1/3, Moscow 119991, Russia
| | - Oleg V. Borshchev
- Enikolopov Institute of Synthetic Polymeric Materials, Russian Academy of Science, Profsoyuznaya 70, Moscow 117393, Russia
| | - Sergey A. Ponomarenko
- Enikolopov Institute of Synthetic Polymeric Materials, Russian Academy of Science, Profsoyuznaya 70, Moscow 117393, Russia
| | - Dmitry Y. Paraschuk
- Faculty of Physics, Lomonosov Moscow State University, Leninskie Gory 1/62, Moscow 119991, Russia
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27
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Zhao S, Lin Z, Wang F, Si Z, Chen Z. Theoretical simulation of TADF character of 3,9'-bicarbazole-modified 2,4,6-triphenyl-1,3,5-triazine. J Mol Model 2024; 30:186. [PMID: 38801631 DOI: 10.1007/s00894-024-05976-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2023] [Accepted: 05/15/2024] [Indexed: 05/29/2024]
Abstract
CONTEXT Three donor (D)-acceptor (A)-type temperature-activated delayed fluorescent (TADF) molecules of 9-(2-(4,6-diphenyl-1,3,5-triazin-2-yl)phenyl)-9H-3,9'-bicarbazole (o-TrzDCz), 9-(3-(4,6-diphenyl-1,3,5-triazin-2-yl)phenyl)-9H-3,9'-bicarbazole (m-TrzDCz), and 9-(4-(4,6-diphenyl-1,3,5-triazin-2-yl)phenyl)-9H-3,9'-bicarbazole (p-TrzDCz) were designed in this paper, and the photophysical properties, including the intersystem crossing rate, the reorganization energies (λ), and the intersystem crossing/reverse intersystem crossing (ISC/RISC) rate, were simulated to explore the effect of substitution sites on their TADF character. The values of the twist angle between the D and A moieties in ground state and the molecular root-mean-square deviation (RMSD) of the S1 and T1 states referenced to the S0 state indicate that o-TrzDCz possess bigger steric hindrance and stabler molecular configuration. The λ values of the ISC/RISC process should be 0.06/0.04 eV for o-TrzDCz, which are much smaller than those of m-TrzDCz (0.51/0.41 eV) and p-TrzDCz (1.93/1.06 eV). At the same time, o-TrzDCz possess the biggest kRISC (7.28 × 106 s-1) and kr (3.12 × 106 s-1) values and the smallest kp (0.10 s-1) value among the three titled molecules. These data indicate that o-TrzDCz should have more excellent TADF character than m-TrzDCz and p-TrzDCz. In a word, this research presents that adjusting the molecular linking manner should be a charming way to explore novel high-efficient TADF molecules. METHODS Quantum chemical calculations were performed at PBE0/6-31G* level by Gaussian 09 and ORCA 4.1.0 software packages, and reorganization energies and Huang-Rhys were performed by the DUSHIN program and MOMAP 2019B software package based on the Gaussian 09 output files, while the phosphorescence rates were performed at B3LYP/6-31G* level by Dalton 2021.
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Affiliation(s)
- Shuyuan Zhao
- School of Materials Science and Technology, Jilin Institute of Chemical Technology, Jilin City, People's Republic of China
| | - Zhengwen Lin
- School of Materials Science and Technology, Changchun University of Science and Technology, Changchun City, People's Republic of China
| | - Fang Wang
- School of Materials Science and Technology, Changchun University of Science and Technology, Changchun City, People's Republic of China
| | - Zhenjun Si
- School of Materials Science and Technology, Jilin Institute of Chemical Technology, Jilin City, People's Republic of China.
- School of Materials Science and Technology, Changchun University of Science and Technology, Changchun City, People's Republic of China.
| | - Zhe Chen
- School of Materials Science and Technology, Jilin Institute of Chemical Technology, Jilin City, People's Republic of China
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28
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Stasyuk OA, Voityuk AA, Stasyuk AJ. Facilitating Electron Transfer by Resizing Cyclocarbon Acceptor from C 18 to C 16. Chemistry 2024; 30:e202400215. [PMID: 38530218 DOI: 10.1002/chem.202400215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Revised: 03/25/2024] [Accepted: 03/26/2024] [Indexed: 03/27/2024]
Abstract
Recent advances in synthetic methods, combined with tip-induced on-surface chemistry, have enabled the formation of numerous cyclocarbon molecules. Here, we investigate computationally the experimentally studied C16 and C18 molecules as well as their van der Waals (vdW) complexes with several typical donor and acceptor molecules. Our results demonstrate a remarkable electron-withdrawing ability of cyclocarbon molecules. The vdW complexes of C16 and C18 exhibit a thermodynamically favorable photoinduced electron transfer (ET) from the donor partner to the cyclocarbons that occurs on a picosecond time scale. The lower reorganization energy of C16 compared to C18 leads to a significant acceleration of the ET reactions.
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Affiliation(s)
- O A Stasyuk
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/ Maria Aurèlia, Capmany 69, 17003, Girona, Catalonia, Spain
| | - A A Voityuk
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/ Maria Aurèlia, Capmany 69, 17003, Girona, Catalonia, Spain
| | - A J Stasyuk
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/ Maria Aurèlia, Capmany 69, 17003, Girona, Catalonia, Spain
- Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093, Warsaw, Poland
- Departament de Farmàcia, i Tecnologia Farmacèutica, i Fisicoquímica, Facultat de Farmàcia i Ciències de l'Alimentació, Universitat de Barcelona (UB), Barcelona, Spain
- Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona (UB), Barcelona, Spain
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29
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Ansari IM, Heller ER, Trenins G, Richardson JO. Heavy-atom tunnelling in singlet oxygen deactivation predicted by instanton theory with branch-point singularities. Nat Commun 2024; 15:4335. [PMID: 38773078 DOI: 10.1038/s41467-024-48463-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Accepted: 04/29/2024] [Indexed: 05/23/2024] Open
Abstract
The reactive singlet state of oxygen (O2) can decay to the triplet ground state nonradiatively in the presence of a solvent. There is a controversy about whether tunnelling is involved in this nonadiabatic spin-crossover process. Semiclassical instanton theory provides a reliable and practical computational method for elucidating the reaction mechanism and can account for nuclear quantum effects such as zero-point energy and multidimensional tunnelling. However, the previously developed instanton theory is not directly applicable to this system because of a branch-point singularity which appears in the flux correlation function. Here we derive a new instanton theory for cases dominated by the singularity, leading to a new picture of tunnelling in nonadiabatic processes. Together with multireference electronic-structure theory, this provides a rigorous framework based on first principles that we apply to calculate the decay rate of singlet oxygen in water. The results indicate a new reaction mechanism that is 27 orders of magnitude faster at room temperature than the classical process through the minimum-energy crossing point. We find significant heavy-atom tunnelling contributions as well as a large temperature-dependent H2O/D2O kinetic isotope effect of approximately 20, in excellent agreement with experiment.
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Affiliation(s)
- Imaad M Ansari
- Department of Chemistry and Applied Biosciences, ETH Zürich, 8093, Zürich, Switzerland
| | - Eric R Heller
- Department of Chemistry and Applied Biosciences, ETH Zürich, 8093, Zürich, Switzerland
- Department of Chemistry, University of California, Berkeley, 94720, Berkeley, USA
| | - George Trenins
- Department of Chemistry and Applied Biosciences, ETH Zürich, 8093, Zürich, Switzerland
- MPI for the Structure and Dynamics of Matter, Luruper Chaussee 149, 22761, Hamburg, Germany
| | - Jeremy O Richardson
- Department of Chemistry and Applied Biosciences, ETH Zürich, 8093, Zürich, Switzerland.
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30
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Deepakvijay K, Prakasam A. Exploring the effects of mono-bromination on hole-electron transport and distribution in dibenzofuran and dibenzothiophene isomers: a first-principles study. J Mol Model 2024; 30:171. [PMID: 38761303 DOI: 10.1007/s00894-024-05966-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Accepted: 05/06/2024] [Indexed: 05/20/2024]
Abstract
CONTEXT This study delves into hole-electron transport and distribution properties inherent in mono-brominated dibenzofuran (DBF) and dibenzothiophene (DBT) isomers. As determined by frontier molecular orbitals, all brominated structures have narrower bandgaps than their primary structures. The TD-DFT calculation showed that 2BDBT had the highest absorption wavelength of all molecules at 315.35 nm. Notably, the study unveils remarkably low electron and hole reorganization energies due to bromine substitution in DBF and DBT molecules. Specifically, the 4BDBF has the lowest hole reorganization energy of all DBF configurations, 0.229 eV. In addition, 3BDBF has 0.226 eV less electron reorganization energy than all other molecules. Compared to DBT, 3BDBT has the lowest electron reorganization energy of 0.254 eV. Overall, this research sheds significant light on the fundamental electronic and hole transport characteristics of bromine-substituted DBF and DBT isomers, highlighting their promising role in polymer design as donors/acceptors for advanced organic electronic applications. METHODS Molecular structures were optimized using Density Functional Theory (DFT) B3LYP/6-311 + + G (d, p) level of theory, and the study further elucidates these molecules' energy levels and absorption spectra through Time-Dependent Density Functional Theory TD-DFT; these calculations were performed using Gaussian 09W software package. The key parameters such as reorganization energies, Electron Localization Function map, Laplacian Bond Order, and NCI-RDG were meticulously examined for the molecules with the results of DFT calculations were analyzed and displayed by utilizing the software packages VMD 1.9.4 and Multiwfn 3.8, aiming to comprehend their charge transport and distribution properties.
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Affiliation(s)
- K Deepakvijay
- Computational & Theoretical Physics Laboratory, PG & Research Department of Physics, Thiruvalluvar Govt. Arts College, Rasipuram, 637408, Tamil Nadu, India.
| | - A Prakasam
- Computational & Theoretical Physics Laboratory, PG & Research Department of Physics, Thiruvalluvar Govt. Arts College, Rasipuram, 637408, Tamil Nadu, India.
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31
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Huang XL. Unveiling the role of inorganic nanoparticles in Earth's biochemical evolution through electron transfer dynamics. iScience 2024; 27:109555. [PMID: 38638571 PMCID: PMC11024932 DOI: 10.1016/j.isci.2024.109555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/20/2024] Open
Abstract
This article explores the intricate interplay between inorganic nanoparticles and Earth's biochemical history, with a focus on their electron transfer properties. It reveals how iron oxide and sulfide nanoparticles, as examples of inorganic nanoparticles, exhibit oxidoreductase activity similar to proteins. Termed "life fossil oxidoreductases," these inorganic enzymes influence redox reactions, detoxification processes, and nutrient cycling in early Earth environments. By emphasizing the structural configuration of nanoparticles and their electron conformation, including oxygen defects and metal vacancies, especially electron hopping, the article provides a foundation for understanding inorganic enzyme mechanisms. This approach, rooted in physics, underscores that life's origin and evolution are governed by electron transfer principles within the framework of chemical equilibrium. Today, these nanoparticles serve as vital biocatalysts in natural ecosystems, participating in critical reactions for ecosystem health. The research highlights their enduring impact on Earth's history, shaping ecosystems and interacting with protein metal centers through shared electron transfer dynamics, offering insights into early life processes and adaptations.
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Affiliation(s)
- Xiao-Lan Huang
- Center for Clean Water Technology, School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY 11794-6044, USA
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32
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Liu Z, Song Z, Sun X. All-Atom Photoinduced Charge Transfer Dynamics in Condensed Phase via Multistate Nonlinear-Response Instantaneous Marcus Theory. J Chem Theory Comput 2024; 20:3993-4006. [PMID: 38657208 PMCID: PMC11099976 DOI: 10.1021/acs.jctc.4c00010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 03/30/2024] [Accepted: 04/08/2024] [Indexed: 04/26/2024]
Abstract
Photoinduced charge transfer (CT) in the condensed phase is an essential component in solar energy conversion, but it is challenging to simulate such a process on the all-atom level. The traditional Marcus theory has been utilized for obtaining CT rate constants between pairs of electronic states but cannot account for the nonequilibrium effects due to the initial nuclear preparation. The recently proposed instantaneous Marcus theory (IMT) and its nonlinear-response formulation allow for incorporating the nonequilibrium nuclear relaxation to electronic transition between two states after the photoexcitation from the equilibrium ground state and provide the time-dependent rate coefficient. In this work, we extend the nonlinear-response IMT method for treating photoinduced CT among general multiple electronic states and demonstrate it in the organic photovoltaic carotenoid-porphyrin-fullerene triad dissolved in explicit tetrahydrofuran solvent. All-atom molecular dynamics simulations were employed to obtain the time correlation functions of energy gaps, which were used to generate the IMT-required time-dependent averages and variances of the relevant energy gaps. Our calculations show that the multistate IMT could capture the significant nonequilibrium effects due to the initial nuclear state preparation, and this is corroborated by the substantial differences between the population dynamics predicted by the multistate IMT and the Marcus theory, where the Marcus theory underestimates the population transfer. The population dynamics by multistate IMT is also shown to have a better agreement with the all-atom nonadiabatic mapping dynamics than the Marcus theory does. Because the multistate nonlinear-response IMT is straightforward and cost-effective in implementation and accounts for the nonequilibrium nuclear effects, we believe this method offers a practical strategy for studying charge transfer dynamics in complex condensed-phase systems.
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Affiliation(s)
- Zengkui Liu
- Division
of Arts and Sciences, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, China
- NYU-ECNU
Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshan Road North, Shanghai 200062, China
- Department
of Chemistry, New York University, New York, New York 10003, United States
| | - Zailing Song
- Division
of Arts and Sciences, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, China
| | - Xiang Sun
- Division
of Arts and Sciences, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, China
- NYU-ECNU
Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshan Road North, Shanghai 200062, China
- Department
of Chemistry, New York University, New York, New York 10003, United States
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33
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Lesanavičius M, Seo D, Maurutytė G, Čėnas N. Redox Properties of Bacillus subtilis Ferredoxin:NADP + Oxidoreductase: Potentiometric Characteristics and Reactions with Pro-Oxidant Xenobiotics. Int J Mol Sci 2024; 25:5373. [PMID: 38791410 PMCID: PMC11121358 DOI: 10.3390/ijms25105373] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Revised: 05/03/2024] [Accepted: 05/10/2024] [Indexed: 05/26/2024] Open
Abstract
Bacillus subtilis ferredoxin:NADP+ oxidoreductase (BsFNR) is a thioredoxin reductase-type FNR whose redox properties and reactivity with nonphysiological electron acceptors have been scarcely characterized. On the basis of redox reactions with 3-acetylpyridine adenine dinucleotide phosphate, the two-electron reduction midpoint potential of the flavin adenine dinucleotide (FAD) cofactor was estimated to be -0.240 V. Photoreduction using 5-deazaflavin mononucleotide (5-deazaFMN) as a photosensitizer revealed that the difference in the redox potentials between the first and second single-electron transfer steps was 0.024 V. We examined the mechanisms of the reduction of several different groups of non-physiological electron acceptors catalyzed by BsFNR. The reactivity of quinones and aromatic N-oxides toward BsFNR increased when increasing their single-electron reduction midpoint redox potentials. The reactivity of nitroaromatic compounds was lower due to their lower electron self-exchange rate, but it exhibited the same trend. A mixed single- and two-electron reduction reaction was characteristic of quinones, whereas reactions involving nitroaromatics proceeded exclusively via the one-electron reduction reaction. The oxidation of FADH• to FAD is the rate-limiting step during the oxidation of fully reduced FAD. The calculated electron transfer distances in the reaction with nitroaromatics were close to those of other FNRs including the plant-type enzymes, thus demonstrating their similar active site accessibility to low-molecular-weight oxidants despite the fundamental differences in their structures.
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Affiliation(s)
- Mindaugas Lesanavičius
- Department of Xenobiotics Biochemistry, Institute of Biochemistry, Life Sciences Center, Vilnius University, Saulėtekio Av. 7, LT-10257 Vilnius, Lithuania; (M.L.); (G.M.)
| | - Daisuke Seo
- Division of Material Sciences, Graduate School of Natural Science and Technology, Kanazawa University, Kakuma, Kanazawa 920-1192, Japan;
| | - Gintarė Maurutytė
- Department of Xenobiotics Biochemistry, Institute of Biochemistry, Life Sciences Center, Vilnius University, Saulėtekio Av. 7, LT-10257 Vilnius, Lithuania; (M.L.); (G.M.)
| | - Narimantas Čėnas
- Department of Xenobiotics Biochemistry, Institute of Biochemistry, Life Sciences Center, Vilnius University, Saulėtekio Av. 7, LT-10257 Vilnius, Lithuania; (M.L.); (G.M.)
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34
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Karnes JP, Kumar A, Hopkins Leseberg JA, Day VW, Blakemore JD. Trivalent Cations Slow Electron Transfer to Macrocyclic Heterobimetallic Complexes. Inorg Chem 2024; 63:8710-8729. [PMID: 38669449 DOI: 10.1021/acs.inorgchem.4c00230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/28/2024]
Abstract
Incorporation of secondary redox-inactive cations into heterobimetallic complexes is an attractive strategy for modulation of metal-centered redox chemistry, but quantification of the consequences of incorporating strongly Lewis acidic trivalent cations has received little attention. Here, a family of seven heterobimetallic complexes that pair a redox-active nickel center with La3+, Y3+, Lu3+, Sr2+, Ca2+, K+, and Na+ (in the form of their triflate salts) have been prepared on a heteroditopic ligand platform to understand how chemical behavior varies across the comprehensive series. Structural data from X-ray diffraction analysis demonstrate that the positions adopted by the secondary cations in the crown-ether-like site of the ligand relative to nickel are dependent primarily on the secondary cations' ionic radii and that the triflate counteranions are bound to the cations in all cases. Electrochemical data, in concert with electron paramagnetic resonance studies, show that nickel(II)/nickel(I) redox is modulated by the secondary metals; the heterogeneous electron-transfer rate is diminished for the derivatives incorporating trivalent metals, an effect that is dependent on steric crowding about the nickel metal center and that was quantified here with a topographical free-volume analysis. As related analyses carried out here on previously reported systems bear out similar relationships, we conclude that the placement and identity of both the secondary metal cations and their associated counteranions can afford unique changes in the (electro)chemical behavior of heterobimetallic species.
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Affiliation(s)
- Joseph P Karnes
- Department of Chemistry, University of Kansas, 1567 Irving Hill Road, Lawrence, Kansas 66045, United States
| | - Amit Kumar
- Department of Chemistry, University of Kansas, 1567 Irving Hill Road, Lawrence, Kansas 66045, United States
| | - Julie A Hopkins Leseberg
- Department of Chemistry, University of Kansas, 1567 Irving Hill Road, Lawrence, Kansas 66045, United States
| | - Victor W Day
- Department of Chemistry, University of Kansas, 1567 Irving Hill Road, Lawrence, Kansas 66045, United States
| | - James D Blakemore
- Department of Chemistry, University of Kansas, 1567 Irving Hill Road, Lawrence, Kansas 66045, United States
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35
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Garrido-Barros P, Romero CG, Winkler JR, Peters JC. Intermolecular Proton-Coupled Electron Transfer Reactivity from a Persistent Charge-Transfer State for Reductive Photoelectrocatalysis. J Am Chem Soc 2024; 146:12750-12757. [PMID: 38669102 PMCID: PMC11082884 DOI: 10.1021/jacs.4c02610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 04/05/2024] [Accepted: 04/10/2024] [Indexed: 04/28/2024]
Abstract
Interest in applying proton-coupled electron transfer (PCET) reagents in reductive electro- and photocatalysis requires strategies that mitigate the competing hydrogen evolution reaction. Photoexcitation of a PCET donor to a charge-separated state (CSS) can produce a powerful H-atom donor capable of being electrochemically recycled at a comparatively anodic potential corresponding to its ground state. However, the challenge is designing a mediator with a sufficiently long-lived excited state for bimolecular reactivity. Here, we describe a powerful ferrocene-derived photoelectrochemical PCET mediator exhibiting an unusually long-lived CSS (τ ∼ 0.9 μs). In addition to detailed photophysical studies, proof-of-concept stoichiometric and catalytic proton-coupled reductive transformations are presented, which illustrate the promise of this approach.
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Affiliation(s)
| | | | - Jay R. Winkler
- Division of Chemistry and Chemical
Engineering, California Institute of Technology
(Caltech), Pasadena, California 91125, United States
| | - Jonas C. Peters
- Division of Chemistry and Chemical
Engineering, California Institute of Technology
(Caltech), Pasadena, California 91125, United States
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36
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Li Q, Wu K, Zhu H, Yang Y, He S, Lian T. Charge Transfer from Quantum-Confined 0D, 1D, and 2D Nanocrystals. Chem Rev 2024; 124:5695-5763. [PMID: 38629390 PMCID: PMC11082908 DOI: 10.1021/acs.chemrev.3c00742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 03/29/2024] [Accepted: 04/02/2024] [Indexed: 05/09/2024]
Abstract
The properties of colloidal quantum-confined semiconductor nanocrystals (NCs), including zero-dimensional (0D) quantum dots, 1D nanorods, 2D nanoplatelets, and their heterostructures, can be tuned through their size, dimensionality, and material composition. In their photovoltaic and photocatalytic applications, a key step is to generate spatially separated and long-lived electrons and holes by interfacial charge transfer. These charge transfer properties have been extensively studied recently, which is the subject of this Review. The Review starts with a summary of the electronic structure and optical properties of 0D-2D nanocrystals, followed by the advances in wave function engineering, a novel way to control the spatial distribution of electrons and holes, through their size, dimension, and composition. It discusses the dependence of NC charge transfer on various parameters and the development of the Auger-assisted charge transfer model. Recent advances in understanding multiple exciton generation, decay, and dissociation are also discussed, with an emphasis on multiple carrier transfer. Finally, the applications of nanocrystal-based systems for photocatalysis are reviewed, focusing on the photodriven charge separation and recombination processes that dictate the function and performance of these materials. The Review ends with a summary and outlook of key remaining challenges and promising future directions in the field.
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Affiliation(s)
- Qiuyang Li
- Department
of Physics, University of Michigan, 450 Church St, Ann Arbor, Michigan 48109, United States
| | - Kaifeng Wu
- State
Key Laboratory of Molecular Reaction Dynamics and Collaborative Innovation
Center of Chemistry for Energy Materials (iChEM), Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China
- University
of Chinese Academy of Sciences, Beijing 100049, China
| | - Haiming Zhu
- Department
of Chemistry, Zhejiang University, Hangzhou, Zhejiang 310027, China
| | - Ye Yang
- The
State Key Laboratory of Physical Chemistry of Solid Surfaces, iChEM
(Collaborative Innovation Center of Chemistry for Energy Materials),
College of Chemistry & Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
| | - Sheng He
- Department
of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - Tianquan Lian
- Department
of Chemistry, Emory University, Atlanta, Georgia 30322, United States
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37
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Narita M, Kavungathodi MFM, Dheendayal M, Wagner P, Mori S, Mozer AJ. High Electronic Coupling between Cu Complexes and Oxidized Dyes Confirmed by Measurements of Driving Force Dependent Regeneration Kinetics in Minimal Electrolyte System. J Am Chem Soc 2024; 146:12310-12314. [PMID: 38668078 DOI: 10.1021/jacs.4c02237] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/09/2024]
Abstract
We confirm fast regeneration kinetics between copper complexes and oxidized organic dyes and the major contribution of electronic coupling (HDA). The highest efficiency of dye-sensitized TiO2 solar cells has been shown by employing Cu complex redox couples. Various groups have reported a fast regeneration rate of oxidized dyes by Cu complexes giving a low driving force attributed to low reorganization energy (λ), but the effect of HDA has not been evaluated. The values of HDA and λ can be derived from driving force dependent transient absorption (TA) measurements. However, analyzing TA decay using Cu complexes is not trivial because accelerated recombination by the presence of Cu2+ complexes and biphasic TA decay often complicates the analysis. Here we employ 16 Cu1+ and Co2+ complexes and two dyes. To simplify the system, i.e., making a minimal electrolyte system, Cu2+ and Co3+ complexes and a common additive of 4-tert-butylpyridine are not used. From the driving force dependent TA decays of oxidized dyes by both Cu1+ and Co2+ complexes, λ for the combination of the Cu complexes and dyes is found to be about 0.15 eV lower than that of Co complexes. Approximately 3 to 5 times higher HDA values of Cu complexes than those of Co complexes are obtained, which is the dominant factor for faster rates. The values vary with the structure of the molecules, showing the possibility of increasing the HDA values further. The higher HDA values of a Cu complex than that of a Co complex are also reproduced by quantum chemical calculations.
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Affiliation(s)
- Mitsuru Narita
- Division of Chemistry and Materials, Faculty of Textile Science, Shinshu University, Ueda, Nagano 386-8567, Japan
- Intelligent Polymer Research Institute, Australian Institute for Innovative Materials, University of Wollongong, Wollongong, New South Wales 2522, Australia
| | - Munavvar Fairoos Mele Kavungathodi
- Intelligent Polymer Research Institute, Australian Institute for Innovative Materials, University of Wollongong, Wollongong, New South Wales 2522, Australia
| | - Mantra Dheendayal
- Intelligent Polymer Research Institute, Australian Institute for Innovative Materials, University of Wollongong, Wollongong, New South Wales 2522, Australia
| | - Pawel Wagner
- Intelligent Polymer Research Institute, Australian Institute for Innovative Materials, University of Wollongong, Wollongong, New South Wales 2522, Australia
| | - Shogo Mori
- Division of Chemistry and Materials, Faculty of Textile Science, Shinshu University, Ueda, Nagano 386-8567, Japan
| | - Attila J Mozer
- Intelligent Polymer Research Institute, Australian Institute for Innovative Materials, University of Wollongong, Wollongong, New South Wales 2522, Australia
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38
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Liu Z, Sun X. Instantaneous Marcus theory for photoinduced charge transfer dynamics in multistate harmonic model systems. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2024; 36:315201. [PMID: 38657642 DOI: 10.1088/1361-648x/ad42f2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 04/24/2024] [Indexed: 04/26/2024]
Abstract
Modeling the dynamics of photoinduced charge transfer (CT) in condensed phases presents challenges due to complicated many-body interactions and the quantum nature of electronic transitions. While traditional Marcus theory is a robust method for calculating CT rate constants between electronic states, it cannot account for the nonequilibrium effects arising from the initial nuclear state preparation. In this study, we employ the instantaneous Marcus theory (IMT) to simulate photoinduced CT dynamics. IMT incorporates nonequilibrium structural relaxation following a vertical photoexcitation from the equilibrated ground state, yielding a time-dependent rate coefficient. The multistate harmonic (MSH) model Hamiltonian characterizes an organic photovoltaic carotenoid-porphyrin-fullerene triad dissolved in explicit tetrahydrofuran solvent, constructed by mapping all-atom inputs from molecular dynamics simulations. Our calculations reveal that the electronic population dynamics of the MSH models obtained with IMT agree with the more accurate quantum-mechanical nonequilibrium Fermi's golden rule. This alignment suggests that IMT provides a practical approach to understanding nonadiabatic CT dynamics in condensed-phase systems.
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Affiliation(s)
- Zengkui Liu
- Division of Arts and Sciences, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, People's Republic of China
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshan Road North, Shanghai 200062, People's Republic of China
- Department of Chemistry, New York University, New York, NY 10003, United States of America
| | - Xiang Sun
- Division of Arts and Sciences, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, People's Republic of China
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshan Road North, Shanghai 200062, People's Republic of China
- Department of Chemistry, New York University, New York, NY 10003, United States of America
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39
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Aleksandrov A, Bonvalet A, Müller P, Sorigué D, Beisson F, Antonucci L, Solinas X, Joffre M, Vos MH. Catalytic Mechanism of Fatty Acid Photodecarboxylase: On the Detection and Stability of the Initial Carbonyloxy Radical Intermediate. Angew Chem Int Ed Engl 2024; 63:e202401376. [PMID: 38466236 DOI: 10.1002/anie.202401376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Revised: 02/29/2024] [Accepted: 03/11/2024] [Indexed: 03/12/2024]
Abstract
In fatty acid photodecarboxylase (FAP), light-induced formation of the primary radical product RCOO⋅ from fatty acid RCOO- occurs in 300 ps, upon which CO2 is released quasi-immediately. Based on the hypothesis that aliphatic RCOO⋅ (spectroscopically uncharacterized because unstable) absorbs in the red similarly to aromatic carbonyloxy radicals such as 2,6-dichlorobenzoyloxy radical (DCB⋅), much longer-lived linear RCOO⋅ has been suggested recently. We performed quantum chemical reaction pathway and spectral calculations. These calculations are in line with the experimental DCB⋅ decarboxylation dynamics and spectral properties and show that in contrast to DCB⋅, aliphatic RCOO⋅ radicals a) decarboxylate with a very low energetic barrier and on the timescale of a few ps and b) exhibit little red absorption. A time-resolved infrared spectroscopy experiment confirms very rapid, ≪300 ps RCOO⋅ decarboxylation in FAP. We argue that this property is required for the observed high quantum yield of hydrocarbons formation by FAP.
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Affiliation(s)
- Alexey Aleksandrov
- LOB, CNRS, INSERM, École Polytechnique, Institut Polytechnique de Paris, 91120, Palaiseau, France
| | - Adeline Bonvalet
- LOB, CNRS, INSERM, École Polytechnique, Institut Polytechnique de Paris, 91120, Palaiseau, France
| | - Pavel Müller
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France
| | - Damien Sorigué
- Aix-Marseille University, CEA, CNRS, Institute of Biosciences and Biotechnologies, BIAM Cadarache, 13108, Saint-Paul-lez-Durance, France
- Department of Chemistry, Princeton University, Princeton, NJ, 08544, USA
| | - Fred Beisson
- Aix-Marseille University, CEA, CNRS, Institute of Biosciences and Biotechnologies, BIAM Cadarache, 13108, Saint-Paul-lez-Durance, France
| | - Laura Antonucci
- LOB, CNRS, INSERM, École Polytechnique, Institut Polytechnique de Paris, 91120, Palaiseau, France
| | - Xavier Solinas
- LOB, CNRS, INSERM, École Polytechnique, Institut Polytechnique de Paris, 91120, Palaiseau, France
| | - Manuel Joffre
- LOB, CNRS, INSERM, École Polytechnique, Institut Polytechnique de Paris, 91120, Palaiseau, France
| | - Marten H Vos
- LOB, CNRS, INSERM, École Polytechnique, Institut Polytechnique de Paris, 91120, Palaiseau, France
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40
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Lewis NM, Kisgeropoulos EC, Lubner CE, Fixen KR. Characterization of ferredoxins involved in electron transfer pathways for nitrogen fixation implicates differences in electronic structure in tuning 2[4Fe4S] Fd activity. J Inorg Biochem 2024; 254:112521. [PMID: 38471286 DOI: 10.1016/j.jinorgbio.2024.112521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Revised: 03/03/2024] [Accepted: 03/05/2024] [Indexed: 03/14/2024]
Abstract
Ferredoxins (Fds) are small proteins which shuttle electrons to pathways like biological nitrogen fixation. Physical properties tune the reactivity of Fds with different pathways, but knowledge on how these properties can be manipulated to engineer new electron transfer pathways is lacking. Recently, we showed that an evolved strain of Rhodopseudomonas palustris uses a new electron transfer pathway for nitrogen fixation. This pathway involves a variant of the primary Fd of nitrogen fixation in R. palustris, Fer1, in which threonine at position 11 is substituted for isoleucine (Fer1T11I). To understand why this substitution in Fer1 enables more efficient electron transfer, we used in vivo and in vitro methods to characterize Fer1 and Fer1T11I. Electrochemical characterization revealed both Fer1 and Fer1T11I have similar redox transitions (-480 mV and - 550 mV), indicating the reduction potential was unaffected despite the proximity of T11 to an iron‑sulfur (FeS) cluster of Fer1. Additionally, disruption of hydrogen bonding around an FeS cluster in Fer1 by substituting threonine with alanine (T11A) or valine (T11V) did not increase nitrogenase activity, indicating that disruption of hydrogen bonding does not explain the difference in activity observed for Fer1T11I. Electron paramagnetic resonance spectroscopy studies revealed key differences in the electronic structure of Fer1 and Fer1T11I, which indicate changes to the high spin states and/or spin-spin coupling between the FeS clusters of Fer1. Our data implicates these electronic structure differences in facilitating electron flow and sets a foundation for further investigations to understand the connection between these properties and intermolecular electron transfer.
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Affiliation(s)
- Nathan M Lewis
- Department of Plant and Microbial Biology and the Biotechnology Institute, University of Minnesota, Minneapolis, MN, United States of America
| | | | - Carolyn E Lubner
- National Renewable Energy Laboratory, Golden, CO, United States of America.
| | - Kathryn R Fixen
- Department of Plant and Microbial Biology and the Biotechnology Institute, University of Minnesota, Minneapolis, MN, United States of America.
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41
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Takahashi H, Borrelli R, Gelin MF, Chen L. Finite temperature dynamics in a polarized sub-Ohmic heat bath: A hierarchical equations of motion-tensor train study. J Chem Phys 2024; 160:164106. [PMID: 38656440 DOI: 10.1063/5.0202312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2024] [Accepted: 04/08/2024] [Indexed: 04/26/2024] Open
Abstract
The dynamics of the sub-Ohmic spin-boson model under polarized initial conditions at finite temperatures is investigated by employing both analytical tools and the numerically accurate hierarchical equations of motion-tensor train method. By analyzing the features of nonequilibrium dynamics, we discovered a bifurcation phenomenon, which separates two regimes of the dynamics. It is found that before the bifurcation time, increasing temperature slows down the population dynamics, while the opposite effect occurs after the bifurcation time. The dynamics is highly sensitive to both initial preparation of the bath and thermal effects.
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Affiliation(s)
| | | | - Maxim F Gelin
- School of Science, Hangzhou Dianzi University, Hangzhou 310018, China
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42
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Stewart J, Zayka P, Courter C, Cuk T. Formation of the oxyl's potential energy surface by the spectral kinetics of a vibrational mode. J Chem Phys 2024; 160:164202. [PMID: 38682740 DOI: 10.1063/5.0202441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2024] [Accepted: 04/07/2024] [Indexed: 05/01/2024] Open
Abstract
One of the most reactive intermediates for oxidative reactions is the oxyl radical, an electron-deficient oxygen atom. The discovery of a new vibration upon photoexcitation of the oxygen evolution catalysis detected the oxyl radical at the SrTiO3 surface. The vibration was assigned to a motion of the sub-surface oxygen underneath the titanium oxyl (Ti-O●-) created upon hole transfer to (or electron extraction from) a hydroxylated surface site. Evidence for such an interfacial mode is derived from its spectral shape, which exhibited a Fano resonance-a coupling of a sharp normal mode to continuum excitations. Here, this Fano resonance is utilized to derive precise formation kinetics of the oxyl radical and its associated potential energy surface (PES). From the Fano lineshape, the formation kinetics are obtained from the anti-resonance (the kinetics of the coupling factor), the resonance (the kinetics of the coupled continuum excitations), and the frequency integrated spectrum (the kinetics of the normal mode's cross-section). All three perspectives yield logistic function growth with a half-rise of 2.3 ± 0.3 ps and a time constant of 0.48 ± 0.09 ps. A non-equilibrium transient associated with photoexcitation is separated from the rise of the equilibrated PES. The logistic function characterizes the oxyl coverage at the very initial stages (t ∼ 0) to have an exponential growth rate that quickly decreases toward zero as a limiting coverage is reached. Such time-dependent reaction kinetics identify a dynamic activation barrier associated with the formation of a PES and quantify it for oxyl radical coverage.
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Affiliation(s)
- James Stewart
- Department of Chemistry, University of Colorado, Boulder, Colorado 80303, USA
| | - Paul Zayka
- Department of Chemistry, University of Colorado, Boulder, Colorado 80303, USA
| | - Christen Courter
- Department of Chemistry, University of Colorado, Boulder, Colorado 80303, USA
| | - Tanja Cuk
- Department of Chemistry, University of Colorado, Boulder, Colorado 80303, USA
- Renewable and Sustainable Energy Institute (RASEI), University of Colorado, Boulder, Colorado 80303, USA
- Materials Science and Engineering Program (MSE), University of Colorado, Boulder, Colorado 80303, USA
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43
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Beck WF. Intramolecular charge transfer and the function of vibronic excitons in photosynthetic light harvesting. PHOTOSYNTHESIS RESEARCH 2024:10.1007/s11120-024-01095-5. [PMID: 38656684 DOI: 10.1007/s11120-024-01095-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2023] [Accepted: 03/15/2024] [Indexed: 04/26/2024]
Abstract
A widely discussed explanation for the prevalence of pairs or clusters of closely spaced electronic chromophores in photosynthetic light-harvesting proteins is the presence of ultrafast and highly directional excitation energy transfer pathways mediated by vibronic excitons, the delocalized optical excitations derived from mixing of the electronic and vibrational states of the chromophores. We discuss herein the hypothesis that internal conversion processes between exciton states on the <100 fs timescale are possible when the excitonic potential energy surfaces are controlled by the vibrational modes that induce charge transfer character in a strongly coupled system of chromophores. We discuss two examples, the peridinin-chlorophyll protein from marine dinoflagellates and the intact phycobilisome from cyanobacteria, in which the intramolecular charge-transfer (ICT) character arising from out-of-plane distortion of the conjugation of carotenoid or bilin chromophores also results in localization of the initially delocalized optical excitation on the vibrational timescale. Tuning of the ground state conformations of the chromophores to manipulate their ICT character provides a natural photoregulatory mechanism, which would control the overall quantum yield of excitation energy transfer by turning on and off the delocalized character of the optical excitations.
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Affiliation(s)
- Warren F Beck
- Department of Chemistry, Michigan State University, East Lansing, MI, 48824, USA.
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44
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Frederiksen A, Aldag M, Solov’yov IA, Gerhards L. Activation of Cryptochrome 4 from Atlantic Herring. BIOLOGY 2024; 13:262. [PMID: 38666874 PMCID: PMC11048568 DOI: 10.3390/biology13040262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 04/04/2024] [Accepted: 04/11/2024] [Indexed: 04/28/2024]
Abstract
Marine fish migrate long distances up to hundreds or even thousands of kilometers for various reasons that include seasonal dependencies, feeding, or reproduction. The ability to perceive the geomagnetic field, called magnetoreception, is one of the many mechanisms allowing some fish to navigate reliably in the aquatic realm. While it is believed that the photoreceptor protein cryptochrome 4 (Cry4) is the key component for the radical pair-based magnetoreception mechanism in night migratory songbirds, the Cry4 mechanism in fish is still largely unexplored. The present study aims to investigate properties of the fish Cry4 protein in order to understand the potential involvement in a radical pair-based magnetoreception. Specifically, a computationally reconstructed atomistic model of Cry4 from the Atlantic herring (Clupea harengus) was studied employing classical molecular dynamics (MD) and quantum mechanics/molecular mechanics (QM/MM) methods to investigate internal electron transfers and the radical pair formation. The QM/MM simulations reveal that electron transfers occur similarly to those found experimentally and computationally in Cry4 from European robin (Erithacus rubecula). It is therefore plausible that the investigated Atlantic herring Cry4 has the physical and chemical properties to form radical pairs that in turn could provide fish with a radical pair-based magnetic field compass sensor.
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Affiliation(s)
- Anders Frederiksen
- Institute of Physics, Carl von Ossietzky University of Oldenburg, Carl-von-Ossietzky Straße 9-11, 26129 Oldenburg, Germany; (A.F.); (M.A.); (I.A.S.)
| | - Mandus Aldag
- Institute of Physics, Carl von Ossietzky University of Oldenburg, Carl-von-Ossietzky Straße 9-11, 26129 Oldenburg, Germany; (A.F.); (M.A.); (I.A.S.)
| | - Ilia A. Solov’yov
- Institute of Physics, Carl von Ossietzky University of Oldenburg, Carl-von-Ossietzky Straße 9-11, 26129 Oldenburg, Germany; (A.F.); (M.A.); (I.A.S.)
- Research Centre for Neurosensory Sciences, Carl von Ossietzky University of Oldenburg, Carl-von-Ossietzky Straße 9-11, 26129 Oldenburg, Germany
- Center for Nanoscale Dynamics (CENAD), Carl von Ossietzky University of Oldenburg, Ammerländer Heerstr. 114-118, 26129 Oldenburg, Germany
| | - Luca Gerhards
- Institute of Physics, Carl von Ossietzky University of Oldenburg, Carl-von-Ossietzky Straße 9-11, 26129 Oldenburg, Germany; (A.F.); (M.A.); (I.A.S.)
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45
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Phelan BT, Xie ZL, Liu X, Li X, Mulfort KL, Chen LX. Photodriven electron-transfer dynamics in a series of heteroleptic Cu(I)-anthraquinone dyads. J Chem Phys 2024; 160:144905. [PMID: 38619061 DOI: 10.1063/5.0188245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Accepted: 03/24/2024] [Indexed: 04/16/2024] Open
Abstract
Solar fuels catalysis is a promising route to efficiently harvesting, storing, and utilizing abundant solar energy. To achieve this promise, however, molecular systems must be designed with sustainable components that can balance numerous photophysical and chemical processes. To that end, we report on the structural and photophysical characterization of a series of Cu(I)-anthraquinone-based electron donor-acceptor dyads. The dyads utilized a heteroleptic Cu(I) bis-diimine architecture with a copper(I) bis-phenanthroline chromophore donor and anthraquinone electron acceptor. We characterized the structures of the complexes using x-ray crystallography and density functional theory calculations and the photophysical properties via resonance Raman and optical transient absorption spectroscopy. The calculations and resonance Raman spectroscopy revealed that excitation of the Cu(I) metal-to-ligand charge-transfer (MLCT) transition transfers the electron to a delocalized ligand orbital. The optical transient absorption spectroscopy demonstrated that each dyad formed the oxidized copper-reduced anthraquinone charge-separated state. Unlike most Cu(I) bis-phenanthroline complexes where increasingly bulky substituents on the phenanthroline ligands lead to longer MLCT excited-state lifetimes, here, we observe a decrease in the long-lived charge-separated state lifetime with increasing steric bulk. The charge-separated state lifetimes were best explained in the context of electron-transfer theory rather than with the energy gap law, which is typical for MLCT excited states, despite the complete conjugation between the phenanthroline and anthraquinone moieties.
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Affiliation(s)
- Brian T Phelan
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Zhu-Lin Xie
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Xiaolin Liu
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Xiaosong Li
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Karen L Mulfort
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Lin X Chen
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, USA
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46
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Tao Z, Qiu T, Bhati M, Bian X, Duston T, Rawlinson J, Littlejohn RG, Subotnik JE. Practical phase-space electronic Hamiltonians for ab initio dynamics. J Chem Phys 2024; 160:124101. [PMID: 38526114 DOI: 10.1063/5.0192084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Accepted: 02/14/2024] [Indexed: 03/26/2024] Open
Abstract
Modern electronic structure theory is built around the Born-Oppenheimer approximation and the construction of an electronic Hamiltonian Ĥel(X) that depends on the nuclear position X (and not the nuclear momentum P). In this article, using the well-known theory of electron translation (Γ') and rotational (Γ″) factors to couple electronic transitions to nuclear motion, we construct a practical phase-space electronic Hamiltonian that depends on both nuclear position and momentum, ĤPS(X,P). While classical Born-Oppenheimer dynamics that run along the eigensurfaces of the operator Ĥel(X) can recover many nuclear properties correctly, we present some evidence that motion along the eigensurfaces of ĤPS(X,P) can better capture both nuclear and electronic properties (including the elusive electronic momentum studied by Nafie). Moreover, only the latter (as opposed to the former) conserves the total linear and angular momentum in general.
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Affiliation(s)
- Zhen Tao
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Tian Qiu
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Mansi Bhati
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Xuezhi Bian
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Titouan Duston
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Jonathan Rawlinson
- Department of Mathematics, University of Manchester, Manchester M13 9PL, United Kingdom
| | - Robert G Littlejohn
- Department of Physics, University of California, Berkeley, California 94720, USA
| | - Joseph E Subotnik
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
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47
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Keshari K, Santra A, Velasco L, Sauvan M, Kaur S, Ugale AD, Munshi S, Marco JF, Moonshiram D, Paria S. Functional Model of Compound II of Cytochrome P450: Spectroscopic Characterization and Reactivity Studies of a Fe IV-OH Complex. JACS AU 2024; 4:1142-1154. [PMID: 38559734 PMCID: PMC10976569 DOI: 10.1021/jacsau.3c00844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Revised: 02/12/2024] [Accepted: 02/26/2024] [Indexed: 04/04/2024]
Abstract
Herein, we show that the reaction of a mononuclear FeIII(OH) complex (1) with N-tosyliminobenzyliodinane (PhINTs) resulted in the formation of a FeIV(OH) species (3). The obtained complex 3 was characterized by an array of spectroscopic techniques and represented a rare example of a synthetic FeIV(OH) complex. The reaction of 1 with the one-electron oxidizing agent was reported to form a ligand-oxidized FeIII(OH) complex (2). 3 revealed a one-electron reduction potential of -0.22 V vs Fc+/Fc at -15 °C, which was 150 mV anodically shifted than 2 (Ered = -0.37 V vs Fc+/Fc at -15 °C), inferring 3 to be more oxidizing than 2. 3 reacted spontaneously with (4-OMe-C6H4)3C• to form (4-OMe-C6H4)3C(OH) through rebound of the OH group and displayed significantly faster reactivity than 2. Further, activation of the hydrocarbon C-H and the phenolic O-H bond by 2 and 3 was compared and showed that 3 is a stronger oxidant than 2. A detailed kinetic study established the occurrence of a concerted proton-electron transfer/hydrogen atom transfer reaction of 3. Studying one-electron reduction of 2 and 3 using decamethylferrocene (Fc*) revealed a higher ket of 3 than 2. The study established that the primary coordination sphere around Fe and the redox state of the metal center is very crucial in controlling the reactivity of high-valent Fe-OH complexes. Further, a FeIII(OMe) complex (4) was synthesized and thoroughly characterized, including X-ray structure determination. The reaction of 4 with PhINTs resulted in the formation of a FeIV(OMe) species (5), revealing the presence of two FeIV species with isomer shifts of -0.11 mm/s and = 0.17 mm/s in the Mössbauer spectrum and showed FeIV/FeIII potential at -0.36 V vs Fc+/Fc couple in acetonitrile at -15 °C. The reactivity studies of 5 were investigated and compared with the FeIV(OH) complex (3).
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Affiliation(s)
- Kritika Keshari
- Department
of Chemistry, Indian Institute of Technology
Delhi, Hauz Khas, New Delhi 110016, India
| | - Aakash Santra
- Department
of Chemistry, Indian Institute of Technology
Delhi, Hauz Khas, New Delhi 110016, India
| | - Lucía Velasco
- Instituto
de Ciencia de Materiales de Madrid, Consejo
Superior de Investigaciones Científicas, Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Maxime Sauvan
- Instituto
de Ciencia de Materiales de Madrid, Consejo
Superior de Investigaciones Científicas, Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Simarjeet Kaur
- Department
of Chemistry, Indian Institute of Technology
Delhi, Hauz Khas, New Delhi 110016, India
| | - Ashok D. Ugale
- Instituto
de Ciencia de Materiales de Madrid, Consejo
Superior de Investigaciones Científicas, Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Sandip Munshi
- School
of Chemical Science, Indian Association
for the Cultivation of Science, Raja S C Mulliick Road, Kolkata 700032, India
| | - J. F. Marco
- Instituto
de Quimica Fisica Blas Cabrera, Consejo
Superior de Investigaciones Científicas, C. de Serrano, 119, Serrano, Madrid 28006, Spain
| | - Dooshaye Moonshiram
- Instituto
de Ciencia de Materiales de Madrid, Consejo
Superior de Investigaciones Científicas, Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Sayantan Paria
- Department
of Chemistry, Indian Institute of Technology
Delhi, Hauz Khas, New Delhi 110016, India
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48
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Lan J, Chergui M, Pasquarello A. Dynamics of the charge transfer to solvent process in aqueous iodide. Nat Commun 2024; 15:2544. [PMID: 38514610 PMCID: PMC11258362 DOI: 10.1038/s41467-024-46772-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Accepted: 03/05/2024] [Indexed: 03/23/2024] Open
Abstract
Charge-transfer-to-solvent states in aqueous halides are ideal systems for studying the electron-transfer dynamics to the solvent involving a complex interplay between electronic excitation and solvent polarization. Despite extensive experimental investigations, a full picture of the charge-transfer-to-solvent dynamics has remained elusive. Here, we visualise the intricate interplay between the dynamics of the electron and the solvent polarization occurring in this process. Through the combined use of ab initio molecular dynamics and machine learning methods, we investigate the structure, dynamics and free energy as the excited electron evolves through the charge-transfer-to-solvent process, which we characterize as a sequence of states denoted charge-transfer-to-solvent, contact-pair, solvent-separated, and hydrated electron states, depending on the distance between the iodine and the excited electron. Our assignment of the charge-transfer-to-solvent states is supported by the good agreement between calculated and measured vertical binding energies. Our results reveal the charge transfer process in terms of the underlying atomic processes and mechanisms.
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Affiliation(s)
- Jinggang Lan
- Chaire de Simulation à l'Echelle Atomique (CSEA), Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015, Lausanne, Switzerland.
- Department of Chemistry, New York University, New York, NY, 10003, USA.
- Simons Center for Computational Physical Chemistry at New York University, New York, NY, 10003, USA.
| | - Majed Chergui
- Lausanne Centre for Ultrafast Science (LACUS), ISIC, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015, Lausanne, Switzerland
- Elettra - Sincrotrone Trieste, Area Science Park I - 34149, Trieste, Italy
| | - Alfredo Pasquarello
- Chaire de Simulation à l'Echelle Atomique (CSEA), Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015, Lausanne, Switzerland
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49
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Dantus M. Tracking Molecular Fragmentation in Electron-Ionization Mass Spectrometry with Ultrafast Time Resolution. Acc Chem Res 2024; 57:845-854. [PMID: 38366970 PMCID: PMC10956387 DOI: 10.1021/acs.accounts.3c00713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2023] [Revised: 01/24/2024] [Accepted: 01/26/2024] [Indexed: 02/19/2024]
Abstract
ConspectusMass spectrometry is a powerful analytical method capable of identifying compounds given a minute amount of material. The fragmentation pattern that results following molecular activation serves as a fingerprint that can be matched to a database compound for identification. Over the past half century, studies have addressed and, in many cases, named the chemical reactions that lead to some of the principal fragment ions. Theories have been developed to predict the observed fragmentation patterns, many of which assume that energy redistributes prior to dissociation. However, the existence of rearrangements and nonergodic processes complicates the prediction of fragmentation patterns and the identification of compounds that have yet to be entered into a curated database. To date, very few studies have addressed the time-dependent nature of the fragmentation of radical cations and, in particular, processes occurring with picosecond or shorter time scales where one expects to find nonergodic reactions.This Account focuses on a novel approach that enables tracking of molecular fragmentation in electron-ionization mass spectrometry with ultrafast time resolution. The two challenges that have prevented the time-resolved studies following electron ionization are the random impact parameter and moment of ionization of each molecule. In addition, medium-sized molecules can produce fragmentation patterns with tens if not hundreds of product ions. Spectroscopically interrogating all of these ions as a function of time is another major challenge. We describe strong field disruptive probing, a method that ionizes molecules on a femtosecond time scale and allows us to track in time the formation of all fragment ions simultaneously.Molecular fragmentation following ionization can occur on a very wide range of time scales. Metastable ions can survive from nanoseconds to microseconds; reactions that depend on vibrational energy redistribution can take picoseconds to nanoseconds; and direct dissociation processes and some rearrangements can take place in femtoseconds to picoseconds. All of these processes depend on the dynamics that occur during attoseconds and femtoseconds following the ionization process. Following a discussion of these time scales, we provide three examples of fragmentations that have been studied with femtosecond time resolution. Each of these examples include unforeseen reaction dynamics that involve a nonergodic process, highlighting the importance of time resolution in mass spectrometry. Finally, we explore future challenges and unresolved questions in mass spectrometry and, more broadly, in the domain of electron-initiated chemical reactions.
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Affiliation(s)
- Marcos Dantus
- Department
of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
- Department
of Physics and Astronomy, Michigan State
University, East Lansing, Michigan 48824, United States
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50
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Nilsen-Moe A, Reinhardt CR, Huang P, Agarwala H, Lopes R, Lasagna M, Glover S, Hammes-Schiffer S, Tommos C, Hammarström L. Switching the proton-coupled electron transfer mechanism for non-canonical tyrosine residues in a de novo protein. Chem Sci 2024; 15:3957-3970. [PMID: 38487244 PMCID: PMC10935721 DOI: 10.1039/d3sc05450k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Accepted: 01/23/2024] [Indexed: 03/17/2024] Open
Abstract
The proton-coupled electron transfer (PCET) reactions of tyrosine (Y) are instrumental to many redox reactions in nature. This study investigates how the local environment and the thermodynamic properties of Y influence its PCET characteristics. Herein, 2- and 4-mercaptophenol (MP) are placed in the well-folded α3C protein (forming 2MP-α3C and 4MP-α3C) and oxidized by external light-generated [Ru(L)3]3+ complexes. The resulting neutral radicals are long-lived (>100 s) with distinct optical and EPR spectra. Calculated spin-density distributions are similar to canonical Y˙ and display very little spin on the S-S bridge that ligates the MPs to C32 inside the protein. With 2MP-α3C and 4MP-α3C we probe how proton transfer (PT) affects the PCET rate constants and mechanisms by varying the degree of solvent exposure or the potential to form an internal hydrogen bond. Solution NMR ensemble structures confirmed our intended design by displaying a major difference in the phenol OH solvent accessible surface area (≤∼2% for 2MP and 30-40% for 4MP). Additionally, 2MP-C32 is within hydrogen bonding distance to a nearby glutamate (average O-O distance is 3.2 ± 0.5 Å), which is suggested also by quantum mechanical/molecular mechanical (QM/MM) molecular dynamics simulations. Neither increased exposure of the phenol OH to solvent (buffered water), nor the internal hydrogen bond, was found to significantly affect the PCET rates. However, the lower phenol pKa values associated with the MP-α3C proteins compared to α3Y provided a sufficient change in PT driving force to alter the PCET mechanism. The PCET mechanism for 2MP-α3C and 4MP-α3C with moderately strong oxidants was predominantly step-wise PTET for pH values, but changed to concerted PCET at neutral pH values and below when a stronger oxidant was used, as found previously for α3Y. This shows how the balance of ET and PT driving forces is critical for controlling PCET mechanisms. The presented results improve our general understanding of amino-acid based PCET in enzymes.
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Affiliation(s)
- Astrid Nilsen-Moe
- Department of Chemistry, Ångström Laboratory, Uppsala University Box 523 75120 Uppsala Sweden
| | - Clorice R Reinhardt
- Department of Molecular Biophysics and Biochemistry, Yale University New Haven CT 06520 USA
| | - Ping Huang
- Department of Chemistry, Ångström Laboratory, Uppsala University Box 523 75120 Uppsala Sweden
| | - Hemlata Agarwala
- Technical University Munich, Campus Straubing for Biotechnology and Sustainability Uferstraße 53 94315 Straubing Germany
| | - Rosana Lopes
- Department of Biochemistry and Biophysics, Texas A&M University College Station TX 77843 USA
| | - Mauricio Lasagna
- Department of Biochemistry and Biophysics, Texas A&M University College Station TX 77843 USA
| | - Starla Glover
- Department of Chemistry, Ångström Laboratory, Uppsala University Box 523 75120 Uppsala Sweden
| | | | - Cecilia Tommos
- Department of Biochemistry and Biophysics, Texas A&M University College Station TX 77843 USA
| | - Leif Hammarström
- Department of Chemistry, Ångström Laboratory, Uppsala University Box 523 75120 Uppsala Sweden
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