Hydrogen-bonded multilayers of self-assembling silanes: structure elucidation by combined Fourier transform infra-red spectroscopy and X-ray scattering techniques

Interfacial Electron Beam Lithography Converts an Insulating Organic Monolayer to a Patterned Single-Layer Conductor with Puzzling Charge Transport Performance

The direct generation of conducting paths within an insulating surface represents a conceptually unexplored approach to single-layer electrical conduction that opens vistas for exciting research and applications fundamentally different from those based on specific layered materials. Herein we report surface channels with single-layer -COOH functionality patterned on insulating n-octadecyltrichlorosilane monolayers on silicon that exhibit unusual ionic-electronic conduction when equipped with ion-releasing silver electrodes. The strong dependence of charge transport in such channels on their lateral dimensions (nanosize, macro-size), the type (p, n) and resistivity (doping level) of the underlying silicon substrate, the nature of the insulating spacer layer between the conducting channel and the silicon surface, and the postpatterning chemical manipulation of channel's -COOH functionality allows designing channels with variable resistivities, ranging from that of a practical insulator to some unexpectedly low values. The unusually low resistivities displayed by channels with nanometric widths and micrometer-millimeter lengths are attributed primarily to enhanced electronic transport within ultrathin nanowire-like silver metal films formed along their conductive paths. Function-structure correlations derived from a comprehensive analysis of electrical, atomic force microscopy, and Fourier transform infrared spectral data suggest an unconventional mode of conduction in these channels, which has yet to be elucidated, apparently involving coupled ionic-electronic transport mediated and enhanced by interfacial electrical interactions with charge carriers located outside the conducting channel and separated from those carrying the measured current. These intriguing findings hint at effects akin to Coulomb pairing in the proposed mechanisms of excitonic superconductivity in interfacial nanosystems structurally related to the present metalized surface channels.

THE STUDY OF INTERMOLECULAR INTERACTIONS IN THE POSS-CONTAINING NANOCOMPOSITES BASED ON POLYURETHANE AND POLYURETHANE/POLY(HYDROXYPROPYL METHACRYLATE) MATRICES

The nanocomposites based on polyurethane matrix and multicomponent polymer matrices consisting of polyurethane and poly(hydroxypropyl methacrylate) with different contents of the last, and 1,2-propanediolisobutyl polyhedral oligomeric silsesquioxane (1,2-propanediolisobutyl-POSS), which was used as a functionalized nanofiller, were synthesized. The influence of the content of 1,2-propanediolisobutyl-POSS on intermolecular interactions and structural features of the nanocomposites was investigated by the method of IR-spectroscopy with Fourier transformation and attenuated total reflection (FTIR-ATR). The study of thermal curing of the model system, which consists of the adduct of trimethylolpropane with toluene diisocyanate and 1,2-propanediolisobutyl-POSS, made it possible to conclude that 1,2-propanediolisobutyl-POSS participates in the reaction of urethane formation using of one of the terminal hydroxyl groups, and it is incorporated into the polymer chain between cross-linking of polyurethane networks. The investigation of multicomponent polymer matrices by FTIR-ATR spectroscopy was done and was shown that photopolymerization of second polymer poly(hydroxypropyl methacrylate) in the matrix of polyurethane was completed by the opening of a double bond and the formation of a linear polymer in the composition of semi-IPN. Studies of nanocomposites based on multicomponent polymer matrices consisting of polyurethane and poly(hydroxypropyl methacrylate) with 15 and 30 % of the last by FTIR-ATR spectroscopy demonstrated the presence of POSS in the nanocomposites and the influence of POSS content on the structure of the studied systems and on the degree of phase separation. The POSS is "embedded" into the polymer chain between cross-linking of the polyurethane networks, with the additional formation of a complex system of intermolecular hydrogen bonds between the carboxyl and amine components of urethane groups in the nanocomposites.

Elucidating the Mechanism of Condensation-Mediated Degradation of Organofunctional Silane Self-Assembled Monolayer Coatings

Dropwise condensation is favorable for numerous industrial and heat/mass transfer applications due to the enhanced heat transfer performance that results from efficient condensate removal. Organofunctional silane self-assembled monolayer (SAM) coatings are one of the most common ultrathin low surface energy materials used to promote dropwise condensation of water vapors because of their minimal thermal resistance and scalable synthesis process. These SAM coatings typically degrade (i.e., condensation transitions from the efficient dropwise mode to the inefficient filmwise mode) rapidly during water vapor condensation. More importantly, the condensation-mediated coating degradation/failure mechanism(s) remain unknown and/or unproven. In this work, we develop a mechanistic understanding of water vapor condensation-mediated organofunctional silane SAM coating degradation and validate our hypothesis through controlled coating synthesis procedures on silicon/silicon dioxide substrates. We further demonstrate that a pristine organofunctional silane SAM coating resulting from a water/moisture-free coating environment exhibits superior long-term robustness during water vapor condensation. Our molecular/nanoscale surface characterizations, pre- and post-condensation heat transfer testing, indicate that the presence of moisture in the coating environment leads to uncoated regions of the substrate that act as nucleation sites for coating degradation. By elucidating the reasons for formation of these degradation nuclei and demonstrating a method to suppress such defects, this study provides new insight into why low surface energy silane SAM coatings degrade during water vapor condensation. The proposed approach addresses a key bottleneck (i.e., coating failure) preventing the adoption of efficient dropwise condensation methods in industry, and it will facilitate enhanced phase-change heat transfer technologies in industrial applications.

Orientational Analysis of Monolayers at Low Surface Concentrations Due to an Increased Signal-to-Noise Ratio (S/N) Using Broadband Sum Frequency Generation Vibrational Spectroscopy

Sum frequency generation (SFG) * Equal contributors. spectroscopy was used to deduce the orientation of the terminal methyl (CH₃) group of self-assembled monolayers (SAMs) at the air-solid and air-liquid interfaces at surface concentrations as low as 1% protonated molecules in the presence of 99% deuterated molecules. The SFG spectra of octadecanethiol (ODT) and deuterated octadecanethiol (d₃₇ ODT) SAMs on gold were used for analysis at the air-solid interface. However, the eicosanoic acid (EA) and deuterated EA (d₃₉ EA) SAMs on the water were analyzed at the air-liquid interface. The tilt angle of the terminal CH₃ group was estimated to be ∼39 ° for a SAM of 1% ODT : 99% d₃₇ ODT, whereas the tilt angle of the terminal CH₃ group of the 1% EA : 99% d₃₉ EA monolayer was estimated to be ∼32 °. The reliability of the orientational analysis at low concentrations was validated by testing the sensitivity of the SFG spectroscopy. A signal-to-noise (S/N) ratio of ∼60 and ∼45 was obtained for the CH₃ symmetric stretch (SS) of 1% ODT : 99% d₃₇ ODT and 1% EA : 99% d₃₉ EA, respectively. The estimated increase in S/N ratio values, as a measure of the sensitivity of the SFG spectroscopy, verified the capacity to acquire the SFG spectra at low concentrations of interfacial molecules under ambient conditions. Overall, the orientational analysis of CH₃ SS vibrational mode was feasible at low concentrations of protonated molecules due to increased S/N ratio. In support, the improved S/N ratio on varying incident power density of the visible beam was also experimentally demonstrated.

Investigation of the Impact of Cross-Polymerization on the Structural and Frictional Properties of Alkylsilane Monolayers Using Molecular Simulation

Cross-linked chemisorbed n-alkylsilane (CH₃(CH₂)_n−1Si(OH)₃) monolayers on amorphous silica surfaces have been studied and their structural properties and frictional performance were compared to those of equivalent monolayers without cross-linkages. The simulations isolated for the first time the effects of both siloxane cross-linkages and the fraction of chains chemisorbed to the surface, providing insight into a longstanding fundamental question in the literature regarding molecular-level structure. The results demonstrate that both cross-linkages and the fraction of chemisorbed chains affect monolayer structure in small but measurable ways, particularly for monolayers constructed from short chains; however, these changes do not appear to have a significant impact on frictional performance.

Interfacial Electron Beam Lithography: Chemical Monolayer Nanopatterning via Electron-Beam-Induced Interfacial Solid-Phase Oxidation

Chemical nanopatterning-the deliberate nanoscale modification of the chemical nature of a solid surface-is conveniently realized using organic monolayer coatings to impart well-defined chemical functionalities to selected surface regions of the coated solid. Most monolayer patterning methods, however, exploit destructive processes that introduce topographic as well as other undesired structural and chemical transformations along with the desired surface chemical modification. In particular in electron beam lithography (EBL), organic monolayers have been used mainly as ultrathin resists capable of improving the resolution of patterning via local deposition or removal of material. On the basis of the recent discovery of a class of radiation-induced interfacial chemical transformations confined to the contact surface between two solids, we have advanced a direct, nondestructive EBL approach to chemical nanopatterning-interfacial electron beam lithography (IEBL)-demonstrated here by the e-beam-induced local oxidation of the -CH₃ surface moieties of a highly ordered self-assembled n-alkylsilane monolayer to -COOH while fully preserving the monolayer structural integrity and molecular organization. In this conceptually different EBL process, the traditional resist is replaced by a thin film coating that acts as a site-activated reagent/catalyst in the chemical modification of the coated surface, here the top surface of the to-be-patterned monolayer. Structural and chemical transformations induced in the thin film coating and the underlying monolayer upon exposure to the electron beam were elucidated using a semiquantitative surface characterization methodology that combines multimode AFM imaging with postpatterning surface chemical modifications and quantitative micro-FTIR measurements. IEBL offers attractive opportunities in chemical nanopatterning, for example, by enabling the application of the advanced EBL technology to the straightforward nanoscale functionalization of the simplest commonly used organosilane monolayers.

Chemical Vapor Deposition of Azidoalkylsilane Monolayer Films

N₃-functionalized monolayers on silicon wafer substrates are prepared via the controlled vapor-phase deposition of 11-azidoundecyltrimethoxysilanes at reduced pressure and elevated temperature. The quality of the layer is assessed using contact angle, attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR), and ellipsometry measurements. At 60 °C, longer deposition times are needed to achieve monolayers with similar N₃ density compared to depositions at 145 °C. The monolayers formed via the vapor phase are denser compared to those formed via a solvent-based deposition process. ATR-FTIR measurements confirm the incorporation of azido-alkyl chains in the monolayer and the formation of siloxane bridges with the underlying oxide at both deposition temperatures. X-ray photon spectroscopy shows that the N₃ group is oriented upward in the grafted layer. Finally, the density was determined using total reflection X-ray fluorescence after a click reaction with chlorohexyne and amounts to 2.5 × 10¹⁴ N₃ groups/cm². In summary, our results demonstrate the formation of a uniform and reproducible N₃-containing monolayer on silicon wafers, hereby providing a functional coating that enables click reactions at the substrate.

Site-Targeted Interfacial Solid-Phase Chemistry: Surface Functionalization of Organic Monolayers via Chemical Transformations Locally Induced at the Boundary between Two Solids

Effective control of chemistry at interfaces is of fundamental importance for the advancement of methods of surface functionalization and patterning that are at the basis of many scientific and technological applications. A conceptually new type of interfacial chemical transformations has been discovered, confined to the contact surface between two solid materials, which may be induced by exposure to X-rays, electrons or UV light, or by the application of electrical bias. One of the reacting solids is a removable thin film coating that acts as a reagent/catalyst in the chemical modification of the solid surface on which it is applied. Given the diversity of thin film coatings that may be used as solid reagents/catalysts and the lateral confinement options provided by the use of irradiation masks, conductive AFM probes or stamps, and electron beams in such solid-phase reactions, this approach is suitable for precise targeting of different desired chemical modifications to predefined surface sites spanning the macro- to nanoscale.

A method to derivatize surface silanol groups to Si-alkyl groups in carbon-doped silicon oxides

A carbon-doped silicon oxide (CDO) finds use as a material with a low dielectric constant (k) for copper interconnects in multilayered integrated circuits (ICs).

Structure of n-Alkyltrichlorosilane Monolayers on Si(100)/SiO2

The structure of n-alkyltrichlorosilane self-assembled monolayers (SAMs) of alkyl chain lengths n = 12, 14, 18, and 22 formed on the amorphous native oxide of silicon (100) has been investigated via angstrom-resolution surface X-ray scattering techniques, with particular focus on the proliferation of lateral order along the molecules' long axis. Grazing incidence diffraction shows that the monolayer is composed of hexagonally packed crystalline-like domains for n = 14, 18, and 22 with a lateral size of about 60 Å. However, Bragg rod analysis shows that ∼12 of the CH2 units are not included in the crystalline-like domains. We assign this, and the limited lateral crystallites' size, to strain induced by the size mismatch between the optimal chain-chain and headgroup-headgroup spacings. Analysis of X-ray reflectivity profiles for n = 12, 14, and 22 shows that the density profile used to successfully model n = 18 provides an excellent fit where the analysis-derived parameters provide complementary structural information to the grazing incidence results.

Single-layer ionic conduction on carboxyl-terminated silane monolayers patterned by constructive lithography

Ionic transport plays a central role in key technologies relevant to energy, and information processing and storage, as well as in the implementation of biological functions in living organisms. Here, we introduce a supramolecular strategy based on the non-destructive chemical patterning of a highly ordered self-assembled monolayer that allows the reproducible fabrication of ion-conducting surface patterns (ion-conducting channels) with top -COOH functional groups precisely definable over the full range of length scales from nanometre to centimetre. The transport of a single layer of selected metal ions and the electrochemical processes related to their motion may thus be confined to predefined surface paths. As a generic solid ionic conductor that can accommodate different mobile ions in the absence of any added electrolyte, these ion-conducting channels exhibit bias-induced competitive transport of different ionic species. This approach offers unprecedented opportunities for the realization of designed ion-conducting systems with nanoscale control, beyond the inherent limitations posed by available ionic materials.

Nanoscale structure of Si/SiO2/organics interfaces

X-ray reflectivity measurements of increasingly more complex interfaces involving silicon (001) substrates reveal the existence of a thin low-density layer intruding between the single-crystalline silicon and the amorphous native SiO2 terminating it. The importance of accounting for this layer in modeling silicon/liquid interfaces and silicon-supported monolayers is demonstrated by comparing fits of the measured reflectivity curves by models including and excluding this layer. The inclusion of this layer, with 6-8 missing electrons per silicon unit cell area, consistent with one missing oxygen atom whose bonds remain hydrogen passivated, is found to be particularly important for an accurate and high-resolution determination of the surface normal density profile from reflectivities spanning extended momentum transfer ranges, now measurable at modern third-generation synchrotron sources.

Effect of leaving group on the structures of alkylsilane SAMs

Multiple transmission and reflection (MTR) infrared spectroscopy has been used to study the kinetics of the formation of self-assembled monolayers (SAM) of octadecylsilanes with different leaving groups, viz. trichloro, trimethoxy, and triethoxy. It was observed that the chlorosilanes form much denser and crystalline-like SAMs and ethoxysilanes form thin SAMs, while methoxysilanes form extremely thin SAMs. The high sensitivity of the MTR IR technique allows the molecular conformations of the alkyl chains and appearance/disappearance of the silanol groups to be scrutinized in detail. This enables the formulation of models for the structures of the SAMs that are in many ways different than the classical picture of silanes on oxide surfaces. We observe that the structure of SAMs depends on the rate of hydrolysis of the leaving groups and thus their chemical nature. SAMs of chlorosilanes resemble a structure of snow moguls or densely packed umbrellas. SAMs of ethoxysilanes, on the other hand, look like stacks of fallen trees, while the molecules of the ultrathin methoxysilane SAMs are lying nearly parallel to the surface, resembling creepers.

Studying the role of surface chemistry on polyelectrolyte adsorption using gold-thiol self-assembled monolayer with optical reflectivity

Self-assembled monolayers of thiols on gold are employed to study the role of surface chemistry on adsorption of polyelectrolytes to solid substrates. The suitability of these substrates is demonstrated in optical reflectivity, which combines high sensitivity to the possibility to precisely control the hydrodynamic conditions at the solid/water interface. Therefore, this system allows the determination of both the adsorbed amount and the kinetics of adsorption. The behavior of two representative strong polyelectrolytes of opposite charge is discussed as a function of pH and of concentration of a monovalent electrolyte in aqueous solutions. The application of equivalent substrates with varying surface chemistry sheds light on the role of different energetic contributions driving polyelectrolyte adsorption.

Connecting supramolecular bond lifetime and network mobility for scratch healing in poly(butyl acrylate) ionomers containing sodium, zinc and cobalt

In this work, we correlate network dynamics, supramolecular reversibility and the macroscopic surface scratch healing behavior for a series of elastomeric ionomers based on an amorphous backbone with varying fractions of carboxylate pendant groups completely neutralized by Na(+), Zn(2+) or Co(2+) as the counter ions. Our results based on temperature dependent dynamic rheology with simultaneous FTIR analysis clearly indicate that the effective supramolecular bond lifetime (τ(b)) is an important parameter to ascertain the ideal range of viscoelasticity for good macroscopic healing. The reversible coordination increased with higher valence metal ions and ionic content. Both rheological and spectroscopic analyses show a decrease in supramolecular assembly with temperature. The temperature dependent τ(b) was used to calculate the activation energy (Ea) of dissociation for the ionic clusters. According to self-healing experiments based on macroscale surface scratching, a supramolecular bond lifetime between 10 and 100 s results in samples with complete surface scratch healing and good mechanical robustness.

Pseudorotational epitaxy of self-assembled octadecyltrichlorosilane monolayers on sapphire (0001)

The structure of octadecyltrichlorosilane self-assembled monolayers (SAMs) on sapphire (0001) was studied by Å-resolution surface-specific x-ray scattering methods. The monolayer was found to consist of three sublayers where the outermost layer corresponds to vertically oriented, closely packed alkyl tails. Laterally, the monolayer is hexagonally packed and exhibits pseudorotational epitaxy to the sapphire, manifested by a broad scattering peak at zero relative azimuthal rotation, with long powderlike tails. The lattice mismatch of ∼ 1%-3% to the sapphire's and the different length scale introduced by the lateral Si-O-Si bonding prohibit positional epitaxy. However, the substrate induces an intriguing increase in the crystalline coherence length of the SAM's powderlike crystallites when rotationally aligned with the sapphire's lattice. The increase correlates well with the rotational dependence of the separation of corresponding substrate-monolayer lattice sites.

Interfacial assembly of lipopeptide surfactants on octyltrimethoxysilane-modified silica surface

The adsorption of a series of cationic lipopeptide surfactants, C14Kn (where C14 denotes the myristic acyl chain and Kn represents n number of lysine residues) at the hydrophobic solid/water interface has been studied using spectroscopic ellipsometry (SE) and neutron reflection (NR). The hydrophobic C8 surface was prepared by grafting a monolayer of octyltrimethoxysilane on the silicon surface. SE was used to follow the dynamic adsorption from these lipopeptide surfactants and the amount was found to undergo a fast increase within the first 2-3 min, followed by a much slower process tending to equilibration in the subsequent 15-20 min. Lipopetide surfactants with n = 1-4 showed similar dynamic features, indicating that the interaction between the acyl chain and the C8 surface is the main driving force for adsorption. The saturation adsorption amount of C14Kn at the C8/water interface was found to be inversely related to the increasing number of Lys residues in the head group due to the increase of steric hindrance and electrostatic repulsion between the head groups. Solution concentration had a significant effect on the initial adsorption rate, similar to the feature observed from nonionic surfactants CmEn. The structure of the adsorbed layers was studied by NR in conjunction with isotopic contrasts. The layer formed by the head groups of C14K1 was 10 Å thick, and those formed by C14K2, C14K3 and C14K4 head groups were all about 13 Å thick. In contrast, the thicknesses of the layers formed by hydrophobic tails of C14K1, C14K2 C14K3, and C14K4 were found to be 17, 13, 10, and 10 Å, respectively, resulting in the steady increase of area per molecule at the interface from 29 ± 2 Å(2) for C14K1 to 65 ± 2 Å(2) for C14K4. Thus, with an increase in the head group length, the molecules in the adsorbed layer tended to lie down upon adsorption.

Semirigid Biobased Polymer Brush: Poly(α-methylene-γ-butyrolactone) Brushes

High-density poly(α-methylene-γ-butyrolactone) (PMBL) brushes were produced by surface-initiated atom transfer radical polymerization of α-methylene-γ-butyrolactone (MBL), a biomass derived from tulips, on a silicon substrate. The relative elastic modulus was evaluated through force-curve measurements using a scanning force microscopy. The friction coefficient was measured using a macroscopic friction test. The PMBL brushes exhibit larger elastic modulus and better friction resistance than PMMA brushes as a result of the highly stretched conformation and polar interaction between PMBL chains.

Conductance statistics from a large array of sub-10 nm molecular junctions

Devices made of few molecules constitute the miniaturization limit that both inorganic and organic-based electronics aspire to reach. However, integration of millions of molecular junctions with less than 100 molecules each has been a long technological challenge requiring well controlled nanometric electrodes. Here we report molecular junctions fabricated on a large array of sub-10 nm single crystal Au nanodots electrodes, a new approach that allows us to measure the conductance of up to a million of junctions in a single conducting atomic force microscope (C-AFM) image. We observe two peaks of conductance for alkylthiol molecules. Tunneling decay constant (β) for alkanethiols, is in the same range as previous studies. Energy position of molecular orbitals, obtained by transient voltage spectroscopy, varies from peak to peak, in correlation with conductance values.

Sample cells for probing solid/liquid interfaces with broadband sum-frequency-generation spectroscopy

Two sample cells designed specifically for sum-frequency-generation (SFG) measurements at the solid/liquid interface were developed: one thin-layer analysis cell allowing measurement of films on reflective metallic surfaces through a micrometer layer of solution and one spectroelectrochemical cell allowing investigation of processes at the indium tin oxide/solution interface. Both sample cells are described in detail and data illustrating the capabilities of each are shown. To further improve measurements at solid/liquid interfaces, the broadband SFG system was modified to include a reference beam which can be measured simultaneously with the sample signal, permitting background correction of SFG spectra in real time. Sensitivity tests of this system yielded a signal-to-noise ratio of 100 at a surface coverage of 0.2 molecules/nm(2). Details on data analysis routines, pulse shaping methods of the visible beam, as well as the design of a purging chamber and sample stage setup are presented. These descriptions will be useful to those planning to set up a SFG spectrometer or seeking to optimize their own SFG systems for measurements of solid/liquid interfaces.

Surface functionalization of WS2 fullerene-like nanoparticles

WS(2) belongs to a family of layered metal dichalcogenide compounds that are known to form cylindrical (inorganic nanotubes-INT) and polyhedral nanostructures--onion or nested fullerene-like (IF) particles. The outermost layers of these IF nanoparticles can be peeled under shear stress, thus IF nanoparticles have been studied for their use as solid lubricants. However, the IF nanoparticles tend to agglomerate, presumably because of surface structural defects induced by elastic strain and curvature, a fact that has a deleterious effect on their tribological properties. In the present work, chemical modification of the IF-WS(2) surface with alkyl-silane molecules is reported. The surface-modified IF nanoparticles display improved dispersion in oil-based suspensions. The alkyl-silane coating reduces the IF-WS(2) nanoparticles' tendency to agglomerate and consequently improves the long-term tribological behavior of oil formulated with the IF additive.

Patterned organosilane monolayers as lyophobic-lyophilic guiding templates in surface self-assembly: monolayer self-assembly versus wetting-driven self-assembly

Monolayer self-assembly (MSA) was discovered owing to the spectacular liquid repellency (lyophobicity) characteristic of typical self-assembling monolayers of long tail amphiphiles, which facilitates a straightforward visualization of the MSA process without the need of any sophisticated analytical equipment. It is this remarkable property that allows precise control of the self-assembly of discrete, well-defined monolayers, and it was the alternation of lyophobicity and lyophilicity (liquid affinity) in a system of monolayer-forming bifunctional organosilanes that allowed the extension of the principle of MSA to the layer-by-layer self-assembly of planed multilayers. On this basis, the possibility of generating at will patterned monolayer surfaces with lyophobic and lyophilic regions paves the way to the engineering of molecular templates for site-defined deposition of materials on a surface via either precise MSA or wetting-driven self-assembly (WDSA), namely, the selective retention of a liquid repelled by the lyophobic regions of the pattern on its lyophilic sites. Highly ordered organosilane monolayer and thicker layer-by-layer assembled structures are shown to be ideally suited for this purpose. Examples are given of novel WDSA and MSA processes, such as guided deposition by WDSA on lyophobic-lyophilic monolayer and bilayer template patterns at elevated temperatures, from melts and solutions that solidify upon cooling to the ambient temperature, and the possible extension of constructive nanolithography to thicker layer-by-layer assembled films, which paves the way to three-dimensional (3D) template patterns made of readily available monofunctional n-alkyl silanes only. It is further shown how WDSA may contribute to MSA on nanoscale template features as well as how combined MSA and WDSA modes of surface assembly may lead to composite surface architectures exhibiting rather surprising new properties. Finally, a critical evaluation is offered of the scope, advantages, and limitations of MSA and WDSA in the bottom-up fabrication of surface structures on variable length scales from nano to macro.

Aptamer fiber anchored on the edge of a protein pattern: a template for nanowire fabrication

How to lay down nanowires at designated positions is a challenge that undermines the development of nanowire-based devices. We demonstrate that aptamer fibers, which are formed by the self-assembly of multiple aptamers, anchor specifically on the edge of protein patterns. This edge-anchoring effect originates from the biospecific recognition between the aptamer and its target protein. The fractal- shaped aptamer fibers are 1-6 nm high and can be tens of micrometers long. Once these edge-bound fibers have formed, they can serve as scaffolds for further assembly processes. We used these aptamer fibers as templates to fabricate palladium and streptavidin nanowires, which anchored on the pattern edges and never cross over or collapse over each other. The aptamer fiber scaffold provides a solution for fabricating and interfacing nanowires to existing surface patterns.

The partially degraded hydrophilic silane pattern and its application in studying the structures of long chain alkane films

We developed a protocol to fabricate hydrophilic patterns over an octadecyltrichlorosilane (OTS) film surface with an atomic force microscope (AFM). Through a local probe oxidation under a 100% humidity environment, the OTS was converted into a hydrophilic, carboxylic acid-terminated surface (OTSpd). The OTSpd pattern grew with the voltage dwell time applied on the conducting AFM probe. Eighty nanometer to submillimeter sized OTSpd patterns could be fabricated with a single scanning probe. The OTSpd patterns were used to study the spreading of long chain alkanes. Hexatriacontane (C36H74) was dip-coated on an OTSpd pattern. Subsequently, an additional hydrophilic OTSpd region was fabricated surrounding the coated C36H74. The alkane spread over this newly created region when heated above its melting point. After cooling to room temperature, the shape and structures of the solidified alkane patterns were characterized. On the methyl-terminated, low-energy surface, the alkane molecules stood directly on the surface. In contrast, on the hydrophilic, high-energy surface, the alkane formed seaweed-shaped patterns after spreading. On the OTSpd surface, the alkane molecules initially adsorbed on the hydrophilic surface with their alkyl chains parallel to the surface. Additional alkane molecules stood vertically or tilted on top of the parallel layer, forming the seaweed-shaped layer. The seaweed patterns were previously thought to consist of only vertically standing alkane molecules. We found that three additional tilted phases existed in the seaweed-shaped structures.

Label-free detection of the aptamer binding on protein patterns using Kelvin probe force microscopy (KPFM)

Anti-lysozyme aptamers are found to preferentially bind to the edge of a tightly packed lysozyme pattern. Such edge-binding is due to the better accessibility and flexibility of the edge lysozyme molecules. Kelvin probe force microscopy (KPFM) was used to study the aptamer-lysozyme binding. Our results show that KPFM is capable of detecting the aptamer-protein binding down to the 30 nm scale. The surface potential of the aptamer-lysozyme complex is approximately 12 mV lower than that of the lysozyme. The surface potential images of the aptamer-bound lysozyme patterns have the characteristic shoulder steps around the pattern edge, which is much wider than that of a clean lysozyme pattern. These results demonstrate the potentials of KPFM as a label-free method for the detection of protein-DNA interactions.

Contact electrochemical replication of hydrophilic-hydrophobic monolayer patterns

Contact electrochemical replication (CER) is a novel pattern replication methodology advanced in this laboratory that offers the unprecedented capability of direct one-step reproduction of monolayer surface patterns consisting of hydrophilic domains surrounded by a hydrophobic monolayer background (hydrophilic @ hydrophobic monolayer patterns), regardless of how the initial "master" pattern was created. CER is based on the direct electrochemical transfer of information, through aqueous electrolyte bridges acting as an information transfer medium, between two organosilane monolayers self-assembled on smooth silicon wafer surfaces. Upon the application of an appropriate voltage bias between a patterned monolayer/silicon specimen playing the role of "stamp" and a monolayer/silicon specimen playing the role of "target", the hydrophilic features of the stamp are copied onto the hydrophobic surface of the target. It is shown that this electrochemical printing process may be implemented under a variety of experimental configurations conducive to the formation of nanometric electrolyte bridges between stamp and target; however, using plain liquid water for this purpose is, in general, not satisfactory because of the high surface tension, volatility, and incompressibility of water. High-fidelity replication of monolayer patterns with variable size of hydrophilic features was achieved by replacing water with a sponge-like hydrogel that is nonvolatile, compressible, and binds specifically to the hydrophilic features of such patterns. Since any copy resulting from the CER process can equally perform as stamp in a subsequent CER step, this methodology offers the rather unique option of multiple parallel reproduction of an initially fabricated master pattern.

The boundary molecules in a lysozyme pattern exhibit preferential antibody binding

Lysozyme was immobilized on a prefabricated carboxylic acid terminated chemical template, forming a tightly packed, one monolayer thick lysozyme pattern. Polyclonal anti-lysozyme antibodies can bind to the immobilized lysozyme pattern. Atomic force microscope (AFM) observation reveals that the antibodies bind to the lysozyme molecules on the pattern edge before they bind to the lysozyme molecules in the pattern interior. Better spatial accessibility and flexibility of the lysozyme molecules on the pattern edge are used to explain the observed antibody binding preference. The topographies of the lysozyme pattern also affect the antibody binding. The antibodies bind to the edge lysozyme from the top if the lysozyme pattern is half-buried in a 10 A deep channel, whereas the antibodies bind to the edge lysozyme from the side if the lysozyme pattern is immobilized on a protruding terrace. The observed "edge effect" suggests that, for the same protein coverage, reducing the protein pattern feature to the nanoscale will improve the overall binding activity of the immobilized protein toward the antibody.

In situ ATR FTIR monitoring of the formation of functionalized mono- and multilayers on germanium substrate: from 7-octenyltrichlorosilane to 7-carboxylsilane

The development and optimization of biomimetic surfaces required for biosensors and medical assays are made more efficient by quantitatively monitoring the surface chemical reactions in situ by means of attenuated total reflection (ATR) FTIR spectroscopy. single-beam-sample-reference (SBSR) ATR, as well as modulated excitation (ME), techniques have been applied to get physicochemical information on growth and structure of the surface layer. SBSR and ME methods result in optimum background compensation and signal-to-noise ratio. Surface modification was performed on a germanium multiple internal reflection element (Ge-MIRE). Activation of the surface resulted in free Ge-OH groups used for a spontaneous chemical reaction with 7-octenyltrichlorosilane (7-OTCS) in toluene. Formation of Ge-O-Si bonds was enabled by hydrolization of Si-Cl3 after partial elimination of a tightly bound thin water layer covering the MIRE. Unwanted side-reaction by hydrolization of Si-Cl3 in solution followed by polymerization paralleled this process. Steady growing of the silane layer to multilayer thickness with increasing time was observed in all experiments. Most unexpectedly, in some experiments the end-standing double bond of the silane layer was found to be partly oxidized even after being exposed only to toluene, probably because of catalysis by molecular sieve nanoparticles remaining in toluene after drying. Finally, theoretical means are presented enabling the calculation of the spectrum of dissolved 7-OTCS in toluene, a prerequisite for background compensation during in situ studies of the growing layer.

Postassembly chemical modification of a highly ordered organosilane multilayer: new insights into the structure, bonding, and dynamics of self-assembling silane monolayers

Experimental evidence derived from a comprehensive study of a self-assembled organosilane multilayer film system undergoing a process of postassembly chemical modification that affects interlayer-located polar groups of the constituent molecules while preserving its overall molecular architecture allows a quantitative evaluation of both the degree of intralayer polymerization and that of interlayer covalent bonding of the silane headgroups in a highly ordered layer assembly of this type. The investigated system consists of a layer-by-layer assembled multilayer of a bifunctional n-alkyl silane with terminal alcohol group that is in situ converted, via a wet chemical oxidation process conducted on the entire multilayer, to the corresponding carboxylic acid function. A combined chemical-structural analysis of data furnished by four different techniques, Fourier transform infrared spectroscopy (FTIR), synchrotron X-ray scattering, X-ray photoelectron spectroscopy (XPS), and contact angle measurements, demonstrates that the highly ordered 3D molecular arrangement of the initial alcohol-silane multilayer stack is well preserved upon virtually quantitative conversion of the alcohol to carboxylic acid and the concomitant irreversible cleavage of interlayer covalent bonds. Thus, the correlation of quantitative chemical and structural data obtained from such unreacted and fully reacted film samples offers an unprecedented experimental framework within which it becomes possible to differentiate between intralayer and interlayer covalent bonding. In addition, the use of a sufficiently thick multilayer effectively eliminates the interfering contributions of the underlying silicon oxide substrate to both the X-ray scattering and XPS data. The present findings contribute a firm experimental basis to the elucidation of the self-assembly mechanism, the molecular organization, and the modes and dynamics of intra- and interlayer bonding prevailing in highly ordered organosilane films; with further implications for the rational exploitation of some of the unique options such supramolecular surface entities can offer in the advancement of a chemical nanofabrication methodology.

Comparative study of the molecular aggregation state of alkyl organic monolayers prepared on Si and hydrogen-terminated Si substrates

A comparative study of the molecular aggregation states of n-octadecyltrichlorosilane (OTS) and octadecene monolayers was carried out based on water contact angle, x-ray reflectivity (XR), grazing incidence x-ray diffraction (GIXD), and Fourier transform infrared spectroscopy (FT-IR) measurements. Water contact angle, XR, and FT-IR measurements revealed that the packing density and orientational order of the OTS were higher than those of octadecene. The OTS monolayer was in a hexagonal crystalline state with (10) spacing of 0.417 nm, whereas the octadecene monolayer was in an amorphous state. The growth mechanisms of the OTS and octadecene monolayers are also proposed. The alkyl molecular aggregation states strongly depended on the chemical bonding state at the interface between the alkyl organic molecule and the substrate surface.

Chemical template directed iodine patterns on the octadecyltrichlorosilane surface

A carboxylic-terminated nanometer-scale chemical pattern on an octadecyltrichlorosilane (OTS) surface can guide the deposition and crystallization of iodine, forming an iodine pattern on the chemical pattern. The iodine in the pattern is gel-like when fabricated by the solution-deposit method. In contrast, a dendritic, snowflake-shaped polycrystalline iodine sheet is formed by the vapor-phase condensation method. The data demonstrate that iodine is a good tracing and visualizing agent for studying liquid behavior at the nano scale. The topography of the iodine stain reveals that the "coffee ring" effect can be suppressed by reducing the pattern size and increasing the evaporation rate. The chemical template-bound iodine pattern has an unusually low vapor pressure and it can withstand prolonged baking at elevated temperature, which differs significantly from bulk iodine crystals.

Phase transition of alkylsilane monolayers studied by temperature-dependent grazing incidence X-ray diffraction

The phase transition of organosilane monolayers on Si-wafer substrate surfaces prepared from octadecyltrichlorosilane (OTS) or docosyltrichlorosilane (DOTS) was investigated on the basis of grazing incidence X-ray diffraction (GIXD) at various temperatures. The OTS monolayer was prepared by a chemisorption method. The DOTS monolayer was prepared by a water-cast method (DOTS). The GIXD measurement clarified that the OTS monolayer also changed from hexagonal phase to amorphous state above a melting point of otadecyl groups. The GIXD measurements also clarified that the molecular aggregation state of the DOTS monolayer changes from an anisotropic phase to an isotropic phase with an increase in temperature. An estimated linear thermal expansion coefficient of the lattice lengths of a and b of the DOTS monolayer in the rectangular crystalline state assigned a similar value to those of bulk polyethylene with an orthorhombic crystalline lattice. The setting angle of the ab plane of the rectangular DOTS monolayer also showed similar behavior to that of the ab plane of bulk polyethylene.

Understanding solvation in hydrofluoroalkanes: ab initio calculations and chemical force microscopy

Understanding solvation in hydrofluoroalkane (HFA) propellants is of great importance for the development of novel pressurized metered-dose inhaler (pMDI) formulations. HFA-based pMDIs are not only the most widely used inhalation therapy devices for treating lung diseases, but they also hold promise as vehicles for the systemic delivery of biomolecules to and through the lungs. In this work we propose a combined microscopic experimental and computational approach to quantitatively relate the chemistry of moieties to their HFA-philicity. Binding energy calculations are used to determine the degree of interaction between a propellant HFA and candidate fragments. We define a new quantity, the enhancement factor E, which also takes into account fragment-fragment interactions. This quantity is expected to correlate well with the solubility and the ability of the moieties of interest to impart stability to colloidal dispersions in HFAs. We use a methyl-based (CH) segment and its fluorinated analog (CF) to test our approach. CH is an important baseline case since it represents the tails of surfactants in FDA-approved pMDIs. CF was chosen due to the improved solubility and ability of this chemistry to stabilize aqueous dispersions in HFAs. Adhesion force from Chemical Force Microscopy (CFM) is used as an experimental analog to the binding energy calculations. The force of interaction between a chemically modified AFM tip and substrate is measured in a model HFA, which is a liquid at ambient conditions. Silanes with the same chemistry as the fragments used in the ab initio calculations allow for direct comparison between the two techniques. The CFM results provide an absolute scale for HFA-philicity. Single molecule (pair) forces calculated from the CFM experiments are shown to be in very good agreement to the E determined from the ab initio calculations. The ab initio calculations and CFM are corroborated by previous experimental studies where propellants HFAs are seen to better solvate the CF functionality.

Thin film processing using S-layer proteins: Biotemplated assembly of colloidal gold etch masks for fabrication of silicon nanopillar arrays

We explored the bionanofabrication of silicon nanopillar structures using ordered gold nanoparticle arrays generated from microbial surface layer (S-layer) protein templates. The S-layer template used for these thin film processing experiments was isolated from the Gram-positive bacterium Deinococcus radiodurans. In this preliminary work, S-layers preimmobilized onto chemically modified silicon substrates were initially used to template the fabrication of a nanolithographic hard mask pattern comprised of a hexagonally ordered array of 5-nm gold nanoparticles (lattice constant=18 nm). Significantly, the use of the biotemplated gold nanoparticle mask patterns in an inductively coupled plasma (ICP) etching process successfully yielded silicon nanopillar structures. However, it was found that the resultant nanopillars (8-13 nm wide at the tip, 15-20 nm wide at half-height, 20-30 nm wide at the base, and 60-90 nm tall) appeared to lack any significant degree of translational ordering. The results suggest that further studies are needed in order to elucidate the optimal plasma processing parameters that will lead to the generation of long-range ordered arrays of silicon-based nanostructures using S-layer protein templates.