1
|
Singh K, Saini I, Sood N. A framework based on the information domain to measure coupling changes in electrophysiological signals. Biomed Phys Eng Express 2023; 9:055022. [PMID: 37527634 DOI: 10.1088/2057-1976/acec4e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Accepted: 08/01/2023] [Indexed: 08/03/2023]
Abstract
Objectives.In this paper, the features of physiological signals of healthy dataset are extracted using the linear and non-linear techniques, and a comparison has been made on healthy young and old subjects to study the aging and gender-related changes in the contribution of Heart Rate (HR), Blood Pressure (BP), and Respiration (RESP).Methods. To quantify the coupling changes in cardiovascular, cardiorespiratory, and vasculorespiratory complexity, an information domain approach based on compensated transfer entropy (cTE) is proposed.Result. The results show that there is a substantial decrease in the flow of information from BP tro the time interval between successive R-peaks (RR) and from RR to BP. There is also a significant decrease in the flow of information from RESP to BP and RESP to RR but there is no significant change in the information flow from BP to RESP and RR to RESP.Conclusion. We have done linear and non-linear analysis on the healthy datasets of young and old subjects. As already existed techniques lacks in studying complex behaviours of electrophysiological signals so to overcome these limitations, we have proposed compensated transfer entropy (cTE). We conducted an investigation to determine the degree to which recordings of RESP, BP, and HR can be utilized to predict changes in the other parameters. Specifically, the proposed analysis examined the relationship between these variables and assessed their consistency across different age groups and genders. By analyzing the data, we aimed to gain insights into the interdependencies and predictive potential of these physiological measures in relation to each other.
Collapse
Affiliation(s)
- Kirti Singh
- Department of ECE, Dr BR Ambedkar National Institute of Technology, Jalandhar, Punjab 144001, India
| | - Indu Saini
- Department of ECE, Dr BR Ambedkar National Institute of Technology, Jalandhar, Punjab 144001, India
| | - Neetu Sood
- Department of ECE, Dr BR Ambedkar National Institute of Technology, Jalandhar, Punjab 144001, India
| |
Collapse
|
2
|
The complexity analysis of cerebral oxygen saturation during pneumoperitoneum and Trendelenburg position: a retrospective cohort study. Aging Clin Exp Res 2023; 35:177-184. [PMID: 36322328 PMCID: PMC9816202 DOI: 10.1007/s40520-022-02283-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Accepted: 10/14/2022] [Indexed: 01/07/2023]
Abstract
BACKGROUND The human brain is a highly complex and nonlinear system, nonlinear complexity measures such as approximate entropy (ApEn) and sample entropy (SampEn) can better reveal characteristics of brain dynamics. However, no studies report complexity of perioperative physiological signals to reveal how brain complexity associates with age, varies along with the development of surgery and postoperative neurological complications. AIM This study examined the complexity of intraoperative regional cerebral oxygen saturation (rSO2), aiming to reveal brain dynamics during surgery. METHODS This retrospective cohort study enrolled patients who scheduled for robot-assisted urological surgery. Intraoperative rSO2 was continuously monitored throughout the surgery. Postoperative delirium (POD) was diagnosed by the Confusion Assessment Method. ApEn and SampEn were used to characterize the complexity of rSO2. Pearson correlation coefficients were used to measure the correlation between complexity of rSO2 and age. The association between complexity of rSO2 and POD was examined using T tests. RESULTS A total of 68 patients (mean [SD] age, 63.0 (12.0) years; 47 (69.1%) males) were include in this analysis. There was a significant reverse relationship between the complexity of rSO2 and age (The correlation coefficients range between - 0.32 and - 0.28, all p < 0.05). Patients ≥ 75 years showed significantly lower complexity of rSO2 than the other two groups. Older age remained an independent factor influencing complexity of rSO2 after adjusting for a number of covariates. Six patients (8.8%) developed POD, and POD patients had lower complexity of rSO2 compared with non-POD patients. CONCLUSIONS The complexity of rSO2 may serve as a new candidate marker of aging and POD prediction.
Collapse
|
3
|
Fares S, Bakkar NMZ, Alami R, Lakkis I, Badr K. Longitudinal study on the effect of surgical weight loss on beat-to-beat blood pressure variability in patients undergoing bariatric surgery: a study protocol. BMJ Open 2021; 11:e050957. [PMID: 34667007 PMCID: PMC8527146 DOI: 10.1136/bmjopen-2021-050957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Abstract
INTRODUCTION Alterations in linear and non-linear parameters of beat-to-beat blood pressure variability (BPV) have been shown to predict disease prognosis and distinguish between risk categories in various pathological conditions, independently of average blood pressure levels. Obesity places subjects at elevated risk of vascular diseases, including hypertension, resulting in serious cardiac, respiratory and cerebral events. However, little is known about the status of vascular dynamics in obese and morbidly obese adults. METHODS AND ANALYSIS In this present quasi-experimental longitudinal study, changes in beat-to-beat BPV, using continuous, non-invasive blood pressure monitoring, in obese subjects undergoing bariatric surgery are characterised. The capacity of linear and non-linear measures of BPV to detect differences between hypertensive, prehypertensive and normotensive obese subjects prebariatric and postbariatric surgery are tested. Additionally, potential correlations between beat-to-beat BPV and age, body mass index, gender and comorbidities will be investigated. In parallel, the impact of the unsteady fluctuations of beat-to-beat blood pressure on the dynamic stresses imparted by blood flow on blood vessel walls will be explored. We expect to find altered BPV profiles in hypertensive and prehypertensive subjects as compared with normotensive subjects. We also expect to see differential normalisation in BPV profiles between hypertensive, prehypertensive and normotensive subjects over time. ETHICS AND DISSEMINATION The study has been approved by the Institutional Review Board at the American University of Beirut (IRB ID: BIO-2018-0040). Study results will be made available to the public through publications in peer-reviewed journals and conference papers and/or presentations.
Collapse
Affiliation(s)
- Souha Fares
- Rafic Hariri School of Nursing, American University of Beirut, Beirut, Lebanon
| | | | - Ramzi Alami
- Department of Surgery, American University of Beirut Medical Center, Beirut, Lebanon
| | - Issam Lakkis
- Department of Mechanical Engineering, American University of Beirut Faculty of Engineering and Architecture, Beirut, Lebanon
| | - Kamal Badr
- Department of Internal Medicine, American University of Beirut Faculty of Medicine, Beirut, Lebanon
| |
Collapse
|
4
|
Jara JL, Morales-Rojas C, Fernández-Muñoz J, Haunton VJ, Chacón M. Using complexity-entropy planes to detect Parkinson's disease from short segments of haemodynamic signals. Physiol Meas 2021; 42. [PMID: 34256359 DOI: 10.1088/1361-6579/ac13ce] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Accepted: 07/13/2021] [Indexed: 11/11/2022]
Abstract
Objective. There is emerging evidence that analysing the entropy and complexity of biomedical signals can detect underlying changes in physiology which may be reflective of disease pathology. This approach can be used even when only short recordings of biomedical signals are available. This study aimed to determine whether entropy and complexity measures can detect differences between subjects with Parkinsons disease and healthy controls (HCs).Approach. A method based on a diagram of entropy versus complexity, named complexity-entropy plane, was used to re-analyse a dataset of cerebral haemodynamic signals from subjects with Parkinsons disease and HCs obtained under poikilocapnic conditions. A probability distribution for a set of ordinal patterns, designed to capture regularities in a time series, was computed from each signal under analysis. Four types of entropy and ten types of complexity measures were estimated from these distributions. Mean values of entropy and complexity were compared and their classification power was assessed by evaluating the best linear separator on the corresponding complexity-entropy planes.Main results. Few linear separators obtained significantly better classification, evaluated as the area under the receiver operating characteristic curve, than signal mean values. However, significant differences in both entropy and complexity were detected between the groups of participants.Significance. Measures of entropy and complexity were able to detect differences between healthy volunteers and subjects with Parkinson's disease, in poikilocapnic conditions, even though only short recordings were available for analysis. Further work is needed to refine this promising approach, and to help understand the findings in the context of specific pathophysiological changes.
Collapse
Affiliation(s)
- J L Jara
- Departamento de Ingeniería Informática, Universidad de Santiago de Chile, Usach, Santiago, Chile
| | - Catalina Morales-Rojas
- Departamento de Ingeniería Informática, Universidad de Santiago de Chile, Usach, Santiago, Chile
| | - Juan Fernández-Muñoz
- Departamento de Ingeniería Informática, Universidad de Santiago de Chile, Usach, Santiago, Chile
| | - Victoria J Haunton
- Department of Cardiovascular Sciences, University of Leicester, Leicester, United Kingdom
| | - Max Chacón
- Departamento de Ingeniería Informática, Universidad de Santiago de Chile, Usach, Santiago, Chile
| |
Collapse
|
5
|
Singh V, Gupta A, Sohal JS, Singh A, Bakshi S. Age induced interactions between heart rate variability and systolic blood pressure variability using approximate entropy and recurrence quantification analysis: a multiscale cross correlation analysis. Phys Eng Sci Med 2021; 44:497-510. [PMID: 33939105 DOI: 10.1007/s13246-021-01000-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2018] [Accepted: 04/03/2021] [Indexed: 10/21/2022]
Abstract
The purpose of this study is to study the effect of age on the correlation between heart rate variability (HRV) and blood pressure variability (BPV). To meet this end, multi-scale cross correlation (CC) analysis of HRV and systolic blood pressure variability (SBPV) was performed. The Approximate Entropy (ApEn) and Recurrence Quantification Analysis (RQA) derived indices, calculated from RR interval series (RRi) and systolic blood pressure (SBP) series at multiple temporal scales, are the basis of this CC analysis. For the computation of ApEn and RQA indices, the tolerance threshold (r) is chosen by either: (i) selecting any arbitrary value (0.2) within the recommended range (0.1-0.25) times standard deviation (SD) of time series, and (ii) taking the 'r' (ropt) corresponding to maximum ApEn (ApEnmax) as tolerance threshold. It is found that (i) at each time scale (τ), a lower SD is observed when indices are computed using ropt than [Formula: see text] (r0.2), for RRi as well as SBP series, (ii) descriptive indices of RRi are found significant (p < 0.05) at all scales (τ), however for SBP, these are found insignificant (p > 0.05) at most of the scales, (iii) CC values of descriptive statistics viz., mean and SD are not significant (p > 0.05) irrespective of τ, barring τ = 1, (iv) CC values of ApEn and RQA indices, found using ropt, are found significant (p < 0.05) and provide enhanced stratification at τ = 1, 2 and 3, whereas this significant correlation and strong classification is missing for indices calculated using r0.2, and (v) Lastly as τ increases, ApEn and RQA indices, computed with ropt, reverse their trend but manage to provide significant difference in elder and younger subjects. It is concluded that HRV and SBPV interactions gets altered with age. Descriptive indicators however are not enough to capture these changes. These complex interactions can only be deciphered using complexity-based methods such as approximate entropy and that too at the multiple scale level.
Collapse
Affiliation(s)
- Vikramjit Singh
- Department of Electronics and Communication Engineering, I K G Punjab Technical University, Jalandhar, Punjab, India.
| | - Amit Gupta
- Department of Electronics and Communication Engineering, I K G Punjab Technical University, Jalandhar, Punjab, India
| | - J S Sohal
- Ludhiana College of Engineering and Technology, Ludhiana, Punjab, India
| | | | - Surbhi Bakshi
- Department of Electrical Engineering, Chandigarh University, Mohali, India
| |
Collapse
|
6
|
Beat-to-beat blood pressure variability: an early predictor of disease and cardiovascular risk. J Hypertens 2021; 39:830-845. [PMID: 33399302 DOI: 10.1097/hjh.0000000000002733] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Blood pressure (BP) varies on the long, short and very-short term. Owing to the hidden physiological and pathological information present in BP time-series, increasing interest has been given to the study of continuous, beat-to-beat BP variability (BPV) using invasive and noninvasive methods. Different linear and nonlinear parameters of variability are employed in the characterization of BP signals in health and disease. Although linear parameters of beat-to-beat BPV are mainly measures of dispersion, such as standard deviation (SD), nonlinear parameters of BPV quantify the degree of complexity/irregularity- using measures of entropy or self-similarity/correlation. In this review, we summarize the value of linear and nonlinear parameters in reflecting different information about the pathophysiology of changes in beat-to-beat BPV independent of or superior to mean BP. We then provide a comparison of the relative power of linear and nonlinear parameters of beat-to-beat BPV in detecting early and subtle differences in various states. The practical advantage and utility of beat-to-beat BPV monitoring support its incorporation into routine clinical practices.
Collapse
|
7
|
Platiša MM, Radovanović NN, Kalauzi A, Milašinović G, Pavlović SU. Multiscale Entropy Analysis: Application to Cardio-Respiratory Coupling. ENTROPY 2020; 22:e22091042. [PMID: 33286811 PMCID: PMC7597100 DOI: 10.3390/e22091042] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Revised: 07/30/2020] [Accepted: 08/14/2020] [Indexed: 02/07/2023]
Abstract
It is known that in pathological conditions, physiological systems develop changes in the multiscale properties of physiological signals. However, in real life, little is known about how changes in the function of one of the two coupled physiological systems induce changes in function of the other one, especially on their multiscale behavior. Hence, in this work we aimed to examine the complexity of cardio-respiratory coupled systems control using multiscale entropy (MSE) analysis of cardiac intervals MSE (RR), respiratory time series MSE (Resp), and synchrony of these rhythms by cross multiscale entropy (CMSE) analysis, in the heart failure (HF) patients and healthy subjects. We analyzed 20 min of synchronously recorded RR intervals and respiratory signal during relaxation in the supine position in 42 heart failure patients and 14 control healthy subjects. Heart failure group was divided into three subgroups, according to the RR interval time series characteristics (atrial fibrillation (HFAF), sinus rhythm (HFSin), and sinus rhythm with ventricular extrasystoles (HFVES)). Compared with healthy control subjects, alterations in respiratory signal properties were observed in patients from the HFSin and HFVES groups. Further, mean MSE curves of RR intervals and respiratory signal were not statistically different only in the HFSin group (p = 0.43). The level of synchrony between these time series was significantly higher in HFSin and HFVES patients than in control subjects and HFAF patients (p < 0.01). In conclusion, depending on the specific pathologies, primary alterations in the regularity of cardiac rhythm resulted in changes in the regularity of the respiratory rhythm, as well as in the level of their asynchrony.
Collapse
Affiliation(s)
- Mirjana M. Platiša
- Institute of Biophysics, Faculty of Medicine, University of Belgrade, KCS, PO Box 22, 11129 Belgrade, Serbia
- Correspondence: ; Tel.: +381-11-360-7158; Fax: +381-11-360-7061
| | - Nikola N. Radovanović
- Pacemaker Center, Clinical Center of Serbia, 11000 Belgrade, Serbia; (N.N.R.); (G.M.); (S.U.P.)
| | - Aleksandar Kalauzi
- Department for Life Sciences, Institute for Multidisciplinary Research, University of Belgrade, 11000 Belgrade, Serbia;
| | - Goran Milašinović
- Pacemaker Center, Clinical Center of Serbia, 11000 Belgrade, Serbia; (N.N.R.); (G.M.); (S.U.P.)
- Faculty of Medicine, University of Belgrade, 11000 Belgrade, Serbia
| | - Siniša U. Pavlović
- Pacemaker Center, Clinical Center of Serbia, 11000 Belgrade, Serbia; (N.N.R.); (G.M.); (S.U.P.)
- Faculty of Medicine, University of Belgrade, 11000 Belgrade, Serbia
| |
Collapse
|
8
|
ABELLÁN-AYNÉS ORIOL, NARANJO-ORELLANA JOSE, MANONELLES PEDRO, ALACID FERNANDO. MULTISCALE ENTROPY AND MULTISCALE TIME IRREVERSIBILITY ANALYSIS OF RR TIME SERIES DEPENDING ON AMBIENT TEMPERATURE. J MECH MED BIOL 2020. [DOI: 10.1142/s0219519420500293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Purpose: The main aim of this paper is to study the influence of temperature on multiscale entropy (MSE) and multiscale time irreversibility (MTI) through the use of short-term measurements. Methods: A total of 12 physically active, healthy, and nonsmoker individuals ([Formula: see text] years old; [Formula: see text][Formula: see text]cm of height; and [Formula: see text][Formula: see text]kg of body mass) voluntarily participated in this study. Two beat-to-beat recordings of 15[Formula: see text]min length were performed on every participant, one under hot conditions ([Formula: see text]C) and the other assessment under cool conditions ([Formula: see text]C). The order of these two assessments was randomly assigned. Multiscale sample entropy and MTI were assessed in every measurement through 10 scales. Results: Entropy was significantly higher under hot conditions ([Formula: see text]) from the fifth scale compared to cool conditions. On the contrary, MTI values were significantly lower under hotter conditions ([Formula: see text]). Conclusions: The study of MSE and time irreversibility of short RR measurements presents consistent and reliable data. Moreover, exposures to hot conditions provoke an increment of interbeat complexity throughout larger scales and a decrease in the MTI in a healthy population.
Collapse
Affiliation(s)
- ORIOL ABELLÁN-AYNÉS
- Faculty of Sport, University San Antonio of Murcia (UCAM), Avenida Jeronimos s/n, 30007 Murcia, Spain
| | - JOSE NARANJO-ORELLANA
- Department of Sport and Computing, Pablo de Olavide University, Carretera de Utrera, Km. 1, 41013 Seville, Spain
| | - PEDRO MANONELLES
- International Chair of Sports Medicine, Faculty of Medicine, University San Antonio of Murcia (UCAM), Avenida Jeronimos s/n, 30007 Murcia, Spain
| | - FERNANDO ALACID
- Department of Education Health Research Centre, University of Almeria, Carretera Sacramento s/n, 04120 La Cañada de San Urbano, Almeria, Spain
| |
Collapse
|
9
|
Suppressing the Influence of Ectopic Beats by Applying a Physical Threshold-Based Sample Entropy. ENTROPY 2020; 22:e22040411. [PMID: 33286185 PMCID: PMC7516878 DOI: 10.3390/e22040411] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Revised: 03/31/2020] [Accepted: 04/01/2020] [Indexed: 11/17/2022]
Abstract
Sample entropy (SampEn) is widely used for electrocardiogram (ECG) signal analysis to quantify the inherent complexity or regularity of RR interval time series (i.e., heart rate variability (HRV)), with the hypothesis that RR interval time series in pathological conditions output lower SampEn values. However, ectopic beats can significantly influence the entropy values, resulting in difficulty in distinguishing the pathological situation from normal situations. Although a theoretical operation is to exclude the ectopic intervals during HRV analysis, it is not easy to identify all of them in practice, especially for the dynamic ECG signal. Thus, it is important to suppress the influence of ectopic beats on entropy results, i.e., to improve the robustness and stability of entropy measurement for ectopic beats-inserted RR interval time series. In this study, we introduced a physical threshold-based SampEn method, and tested its ability to suppress the influence of ectopic beats for HRV analysis. An experiment on the PhysioNet/MIT RR Interval Databases showed that the SampEn use physical meaning threshold has better performance not only for different data types (normal sinus rhythm (NSR) or congestive heart failure (CHF) recordings), but also for different types of ectopic beat (atrial beats, ventricular beats or both), indicating that using a physical meaning threshold makes SampEn become more consistent and stable.
Collapse
|
10
|
Berry D, Palmer AR, Distefano R, Masten AS. Autonomic complexity and emotion (dys-)regulation in early childhood across high- and low-risk contexts. Dev Psychopathol 2019; 31:1173-1190. [PMID: 31290736 PMCID: PMC6790229 DOI: 10.1017/s0954579419000683] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Developing the ability to regulate one's emotions in accordance with contextual demands (i.e., emotion regulation) is a central developmental task of early childhood. These processes are supported by the engagement of the autonomic nervous system (ANS), a physiological hub of a vast network tasked with dynamically integrating real-time experiential inputs with internal motivational and goal states. To date, much of what is known about the ANS and emotion regulation has been based on measures of respiratory sinus arrhythmia, a cardiac indicator of parasympathetic activity. In the present study, we draw from dynamical systems models to introduce two nonlinear indices of cardiac complexity (fractality and sample entropy) as potential indicators of these broader ANS dynamics. Using data from a stratified sample of preschoolers living in high- (i.e., emergency homeless shelter) and low-risk contexts (N = 115), we show that, in conjunction with respiratory sinus arrhythmia, these nonlinear indices may help to clarify important differences in the behavioral manifestations of emotion regulation. In particular, our results suggest that cardiac complexity may be especially useful for discerning active, effortful emotion regulation from less effortful regulation and dysregulation.
Collapse
Affiliation(s)
- Daniel Berry
- Institute of Child Development, University of Minnesota,Minneapolis,MN,USA
| | - Alyssa R Palmer
- Institute of Child Development, University of Minnesota,Minneapolis,MN,USA
| | - Rebecca Distefano
- Institute of Child Development, University of Minnesota,Minneapolis,MN,USA
| | - Ann S Masten
- Institute of Child Development, University of Minnesota,Minneapolis,MN,USA
| |
Collapse
|
11
|
Information-Domain Analysis of Cardiovascular Complexity: Night and Day Modulations of Entropy and the Effects of Hypertension. ENTROPY 2019; 21:e21060550. [PMID: 33267264 PMCID: PMC7515040 DOI: 10.3390/e21060550] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Revised: 05/27/2019] [Accepted: 05/28/2019] [Indexed: 11/17/2022]
Abstract
Multiscale entropy (MSE) provides information-domain measures of the systems’ complexity. The increasing interest in MSE of the cardiovascular system lies in the possibility of detecting interactions with other regulatory systems, as higher neural networks. However, most of the MSE studies considered the heart-rate (HR) series only and a limited number of scales: actually, an integrated approach investigating HR and blood-pressure (BP) entropies and cross-entropy over the range of scales of traditional spectral analyses is missing. Therefore, we aim to highlight influences of higher brain centers and of the autonomic control on multiscale entropy and cross-entropy of HR and BP over a broad range of scales, by comparing different behavioral states over 24 h and by evaluating the influence of hypertension, which reduces the autonomic control of BP. From 24-h BP recordings in eight normotensive and eight hypertensive participants, we selected subperiods during daytime activities and nighttime sleep. In each subperiod, we derived a series of 16,384 consecutive beats for systolic BP (SBP), diastolic BP (DBP), and pulse interval (PI). We applied a modified MSE method to obtain robust estimates up to time scales of 334 s, covering the traditional frequency bands of spectral analysis, for three embedding dimensions and compared groups (rank-sum test) and conditions (signed-rank test) at each scale. Results demonstrated night-and-day differences at scales associable with modulations in vagal activity, in respiratory mechanics, and in local vascular regulation, and reduced SBP-PI cross-entropy in hypertension, possibly representing a loss of complexity due to an impaired baroreflex sensitivity.
Collapse
|
12
|
Complexity-Based Measures of Heart Rate Dynamics in Older Adults Following Long- and Short-Term Tai Chi Training: Cross-sectional and Randomized Trial Studies. Sci Rep 2019; 9:7500. [PMID: 31097732 PMCID: PMC6522618 DOI: 10.1038/s41598-019-43602-y] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2018] [Accepted: 04/27/2019] [Indexed: 12/19/2022] Open
Abstract
Measures characterizing the complexity of heart rate (HR) dynamics have been informative in predicting age- and disease-related decline in cardiovascular health, but few studies have evaluated whether mind-body exercise can impact HR complexity. This study evaluated the effects of long-term Tai Chi (TC) practice on the complexity of HR dynamics using an observational comparison of TC experts and age- and gender-matched TC-naïve individuals. Shorter-term effects of TC were assessed by randomly assigning TC-naïve participants to either TC group to receive six months of TC training or to a waitlist control group. 23 TC experts (age = 63.3 ± 8.0 y; 24.6 ± 12.0 y TC experience) and 52 TC-naïve (age = 64.3 ± 7.7 y) were enrolled. In cross-sectional analyses, TC experts had a higher overall complexity index (CI, p = 0.004) and higher entropy at multiple individual time scales (p < 0.05); these findings persisted in models accounting for age, gender, body mass index (BMI), and physical activity levels. Longitudinal changes in complexity index did not differ significantly following random assignment to six months of TC vs. a waitlist control; however, within the TC group, complexity at select time scales showed statistically non-significant trends toward increases. Our study supports that longer-term TC mind-body training may be associated with increased complexity of HR dynamics.
Collapse
|
13
|
Song Z, Deng B, Wang J, Wang R. Biomarkers for Alzheimer's Disease Defined by a Novel Brain Functional Network Measure. IEEE Trans Biomed Eng 2019; 66:41-49. [DOI: 10.1109/tbme.2018.2834546] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
|
14
|
Wan X, Xu L. A study for multiscale information transfer measures based on conditional mutual information. PLoS One 2018; 13:e0208423. [PMID: 30521578 PMCID: PMC6283631 DOI: 10.1371/journal.pone.0208423] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2018] [Accepted: 11/17/2018] [Indexed: 11/28/2022] Open
Abstract
As the big data science develops, efficient methods are demanded for various data analysis. Granger causality provides the prime model for quantifying causal interactions. However, this theoretic model does not meet the requirement for real-world data analysis, because real-world time series are diverse whose models are usually unknown. Therefore, model-free measures such as information transfer measures are strongly desired. Here, we propose the multi-scale extension of conditional mutual information measures using MORLET wavelet, which are named the WM and WPM. The proposed measures are computational efficient and interpret information transfer by multi-scales. We use both synthetic data and real-world examples to demonstrate the efficiency of the new methods. The results of the new methods are robust and reliable. Via the simulation studies, we found the new methods outperform the wavelet extension of transfer entropy (WTE) in both computational efficiency and accuracy. The features and properties of the proposed measures are also discussed.
Collapse
Affiliation(s)
- Xiaogeng Wan
- Department of Mathematics, College of Science, Beijing University of Chemical Technology, Beijing, China
- * E-mail:
| | - Lanxi Xu
- Department of Mathematics, College of Science, Beijing University of Chemical Technology, Beijing, China
| |
Collapse
|
15
|
Hortelano M, Reilly RB, Castells F, Cervigón R. Refined Multiscale Fuzzy Entropy to Analyse Post-Exercise Cardiovascular Response in Older Adults With Orthostatic Intolerance. ENTROPY 2018; 20:e20110860. [PMID: 33266584 PMCID: PMC7512426 DOI: 10.3390/e20110860] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/21/2018] [Revised: 10/20/2018] [Accepted: 10/30/2018] [Indexed: 12/15/2022]
Abstract
Orthostatic intolerance syndrome occurs when the autonomic nervous system is incapacitated and fails to respond to the demands associated with the upright position. Assessing this syndrome among the elderly population is important in order to prevent falls. However, this problem is still challenging. The goal of this work was to determine the relationship between orthostatic intolerance (OI) and the cardiovascular response to exercise from the analysis of heart rate and blood pressure. More specifically, the behavior of these cardiovascular variables was evaluated in terms of refined composite multiscale fuzzy entropy (RCMFE), measured at different scales. The dataset was composed by 65 older subjects, 44.6% (n = 29) were OI symptomatic and 55.4% (n = 36) were not. Insignificant differences were found in age and gender between symptomatic and asymptomatic OI participants. When heart rate was evaluated, higher differences between groups were observed during the recovery period immediately after exercise. With respect to the blood pressure and other hemodynamic parameters, most significant results were obtained in the post-exercise stage. In any case, the symptomatic OI group exhibited higher irregularity in the measured parameters, as higher RCMFE levels in all time scales were obtained. This information could be very helpful for a better understanding of cardiovascular instability, as well as to recognize risk factors for falls and impairment of functional status.
Collapse
Affiliation(s)
- Marcos Hortelano
- Escuela Politécnica, UCLM Camino del Pozuelo sn, 16071 Cuenca, Spain
| | - Richard B. Reilly
- School of Engineering, Trinity College, The University of Dublin, Dublin 2 D02 PN40, Ireland
- School of Medicine, Trinity College, The University of Dublin, Dublin 2 D02 PN40, Ireland
- Trinity Centre for Bioengineering, Trinity College, The University of Dublin, Dublin 2 D02 PN40, Ireland
| | - Francisco Castells
- Instituto ITACA, Universitat Politècnica de València, 46022 Valencia, Spain
| | - Raquel Cervigón
- Escuela Politécnica, UCLM Camino del Pozuelo sn, 16071 Cuenca, Spain
- Correspondence: ; Tel.: +34-969-179100
| |
Collapse
|
16
|
Valente M, Javorka M, Porta A, Bari V, Krohova J, Czippelova B, Turianikova Z, Nollo G, Faes L. Univariate and multivariate conditional entropy measures for the characterization of short-term cardiovascular complexity under physiological stress. Physiol Meas 2018; 39:014002. [PMID: 29135467 DOI: 10.1088/1361-6579/aa9a91] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
OBJECTIVE A defining feature of physiological systems under the neuroautonomic regulation is their dynamical complexity. The most common approach to assess physiological complexity from short-term recordings, i.e. to compute the rate of entropy generation of an individual system by means of measures of conditional entropy (CE), does not consider that complexity may change when the investigated system is part of a network of physiological interactions. This study aims at extending the concept of short-term complexity towards the perspective of network physiology, defining multivariate CE measures whereby multiple physiological processes are accounted for in the computation of entropy rates. APPROACH Univariate and multivariate CE measures are computed using state-of-the-art methods for entropy estimation and applied to time series of heart period (H), systolic (S) and diastolic (D) arterial pressure, and respiration (R) variability measured in healthy subjects monitored in a resting state and during conditions of postural and mental stress. MAIN RESULTS Compared with the traditional univariate metric of short-term complexity, multivariate measures provide additional information with plausible physiological interpretation, such as (i) the dampening of respiratory sinus arrhythmia and activation of the baroreflex control during postural stress; (ii) the increased complexity of heart period and blood pressure variability during mental stress, reflecting the effect of respiratory influences and upper cortical centers; (iii) the strong influence of D on S, mediated by left ventricular ejection fraction and vascular properties; (iv) the role of H in reducing the complexity of D, related to cardiac run-off effects; and (v) the unidirectional role of R in influencing cardiovascular variability. SIGNIFICANCE Our results document the importance of employing a network perspective in the evaluation of the short-term complexity of cardiovascular and respiratory dynamics across different physiological states.
Collapse
Affiliation(s)
- M Valente
- Department of Industrial Engineering and BIOtech, University of Trento, Trento, Italy
| | | | | | | | | | | | | | | | | |
Collapse
|
17
|
Multiscale Sample Entropy of Cardiovascular Signals: Does the Choice between Fixed- or Varying-Tolerance among Scales Influence Its Evaluation and Interpretation? ENTROPY 2017. [DOI: 10.3390/e19110590] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
18
|
Castiglioni P, Brambilla L, Bini M, Coruzzi P, Faini A. Multiscale sample entropy of heart rate and blood pressure: Methodological aspects. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2017; 2017:3134-3137. [PMID: 29060562 DOI: 10.1109/embc.2017.8037521] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The entropy of heart rate variability is one of the main features characterizing the complexity of the cardiovascular system. In order to take into account the multiscale nature of cardiovascular regulation, it was proposed to evaluate entropy with a multiscale approach, based on the estimation of Sample Entropy on progressively coarse-grained series (Multiscale Sample Entropy, MSE). Aim of this work is to investigate two methodological aspects related to MSE of cardiovascular signals. The first aspect regards the tolerance below which a couple of points are considered similar in a given embedding dimension, in particular how the way the tolerance is set at each level of coarse graining influences the MSE estimates. The second aspect regards whether heart rate and blood pressure (BP) signals are characterized by different MSE structures.To investigate these aspects, we analyzed 65 continuous BP recordings of more than 90-minute duration in healthy volunteers sitting at rest, and applied MSE estimators to beat-by-beat series of systolic BP, diastolic BP and pulse interval (inverse of heart rate). Results indicate that the way the tolerance is set during coarse graining influences substantially the MSE profile of cardiovascular signals, modifying the relative level of their unpredictability.
Collapse
|
19
|
Can Tai Chi training impact fractal stride time dynamics, an index of gait health, in older adults? Cross-sectional and randomized trial studies. PLoS One 2017; 12:e0186212. [PMID: 29020106 PMCID: PMC5636131 DOI: 10.1371/journal.pone.0186212] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2016] [Accepted: 09/19/2017] [Indexed: 02/07/2023] Open
Abstract
Purpose To determine if Tai Chi (TC) has an impact on long-range correlations and fractal-like scaling in gait stride time dynamics, previously shown to be associated with aging, neurodegenerative disease, and fall risk. Methods Using Detrended Fluctuation Analysis (DFA), this study evaluated the impact of TC mind-body exercise training on stride time dynamics assessed during 10 minute bouts of overground walking. A hybrid study design investigated long-term effects of TC via a cross-sectional comparison of 27 TC experts (24.5 ± 11.8 yrs experience) and 60 age- and gender matched TC-naïve older adults (50–70 yrs). Shorter-term effects of TC were assessed by randomly allocating TC-naïve participants to either 6 months of TC training or to a waitlist control. The alpha (α) long-range scaling coefficient derived from DFA and gait speed were evaluated as outcomes. Results Cross-sectional comparisons using confounder adjusted linear models suggest that TC experts exhibited significantly greater long-range scaling of gait stride time dynamics compared with TC-naïve adults. Longitudinal random-slopes with shared baseline models accounting for multiple confounders suggest that the effects of shorter-term TC training on gait dynamics were not statistically significant, but trended in the same direction as longer-term effects although effect sizes were very small. In contrast, gait speed was unaffected in both cross-sectional and longitudinal comparisons. Conclusion These preliminary findings suggest that fractal-like measures of gait health may be sufficiently precise to capture the positive effects of exercise in the form of Tai Chi, thus warranting further investigation. These results motivate larger and longer-duration trials, in both healthy and health-challenged populations, to further evaluate the potential of Tai Chi to restore age-related declines in gait dynamics. Trial registration The randomized trial component of this study was registered at ClinicalTrials.gov (NCT01340365).
Collapse
|
20
|
Sortica da Costa C, Placek MM, Czosnyka M, Cabella B, Kasprowicz M, Austin T, Smielewski P. Complexity of brain signals is associated with outcome in preterm infants. J Cereb Blood Flow Metab 2017; 37:3368-3379. [PMID: 28075691 PMCID: PMC5624386 DOI: 10.1177/0271678x16687314] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
A characteristic feature of complex healthy biological systems is the ability to react and adapt to minute changes in the environment. This 'complexity' manifests itself in highly irregular patterns of various physiological measurements. Here, we apply Multiscale Entropy (MSE) analysis to assess the complexity of systemic and cerebral near-infrared spectroscopy (NIRS) signals in a cohort of 61 critically ill preterm infants born at median (range) gestational age of 26 (23-31) weeks, before 24 h of life. We further correlate the complexity of these parameters with brain injury and mortality. Lower complexity index (CoI) of oxygenated haemoglobin (HbO2), deoxygenated haemoglobin (Hb) and tissue oxygenation index (TOI) were observed in those infants who developed intraventricular haemorrhage (IVH) compared to those who did not (P = 0.002, P = 0.010 and P = 0.038, respectively). Mean CoI of HbO2, Hb and total haemoglobin index (THI) were lower in those infants who died compared to those who survived (P = 0.012, P = 0.004 and P = 0.003, respectively). CoI-HbO2 was an independent predictor of IVH (P = 0.010). Decreased complexity of brain signals was associated with mortality and brain injury. Measurement of brain signal complexity in preterm infants is feasible and could represent a significant advance in the brain-oriented care.
Collapse
Affiliation(s)
| | - Michal M Placek
- 2 Department of Biomedical Engineering, Wroclaw University of Science and Technology, Wroclaw, Poland
| | - Marek Czosnyka
- 3 Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK
| | - Brenno Cabella
- 3 Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK
| | - Magdalena Kasprowicz
- 2 Department of Biomedical Engineering, Wroclaw University of Science and Technology, Wroclaw, Poland
| | - Topun Austin
- 1 The Rosie Hospital, Cambridge University Hospitals, Cambridge, UK
| | - Peter Smielewski
- 3 Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK
| |
Collapse
|
21
|
Bhogal AS, Mani AR. Pattern Analysis of Oxygen Saturation Variability in Healthy Individuals: Entropy of Pulse Oximetry Signals Carries Information about Mean Oxygen Saturation. Front Physiol 2017; 8:555. [PMID: 28824451 PMCID: PMC5539125 DOI: 10.3389/fphys.2017.00555] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2017] [Accepted: 07/17/2017] [Indexed: 11/13/2022] Open
Abstract
Pulse oximetry is routinely used for monitoring patients' oxygen saturation levels with little regard to the variability of this physiological variable. There are few published studies on oxygen saturation variability (OSV), with none describing the variability and its pattern in a healthy adult population. The aim of this study was to characterize the pattern of OSV using several parameters; the regularity (sample entropy analysis), the self-similarity [detrended fluctuation analysis (DFA)] and the complexity [multiscale entropy (MSE) analysis]. Secondly, to determine if there were any changes that occur with age. The study population consisted of 36 individuals. The “young” population consisted of 20 individuals [Mean (±1 SD) age = 21.0 (±1.36 years)] and the “old” population consisted of 16 individuals [Mean (±1 SD) age = 50.0 (±10.4 years)]. Through DFA analysis, OSV was shown to exhibit fractal-like patterns. The sample entropy revealed the variability to be more regular than heart rate variability and respiratory rate variability. There was also a significant inverse correlation between mean oxygen saturation and sample entropy in healthy individuals. Additionally, the MSE analysis described a complex fluctuation pattern, which was reduced with age (p < 0.05). These findings suggest partial “uncoupling” of the cardio-respiratory control system that occurs with aging. Overall, this study has characterized OSV using pre-existing tools. We have showed that entropy analysis of pulse oximetry signals carries information about body oxygenation. This may have the potential to be used in clinical practice to detect differences in diseased patient subsets.
Collapse
Affiliation(s)
- Amar S Bhogal
- UCL Division of Medicine, University College LondonLondon, United Kingdom
| | - Ali R Mani
- UCL Division of Medicine, University College LondonLondon, United Kingdom
| |
Collapse
|
22
|
Xiong W, Faes L, Ivanov PC. Entropy measures, entropy estimators, and their performance in quantifying complex dynamics: Effects of artifacts, nonstationarity, and long-range correlations. Phys Rev E 2017; 95:062114. [PMID: 28709192 PMCID: PMC6117159 DOI: 10.1103/physreve.95.062114] [Citation(s) in RCA: 85] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2017] [Indexed: 11/07/2022]
Abstract
Entropy measures are widely applied to quantify the complexity of dynamical systems in diverse fields. However, the practical application of entropy methods is challenging, due to the variety of entropy measures and estimators and the complexity of real-world time series, including nonstationarities and long-range correlations (LRC). We conduct a systematic study on the performance, bias, and limitations of three basic measures (entropy, conditional entropy, information storage) and three traditionally used estimators (linear, kernel, nearest neighbor). We investigate the dependence of entropy measures on estimator- and process-specific parameters, and we show the effects of three types of nonstationarities due to artifacts (trends, spikes, local variance change) in simulations of stochastic autoregressive processes. We also analyze the impact of LRC on the theoretical and estimated values of entropy measures. Finally, we apply entropy methods on heart rate variability data from subjects in different physiological states and clinical conditions. We find that entropy measures can only differentiate changes of specific types in cardiac dynamics and that appropriate preprocessing is vital for correct estimation and interpretation. Demonstrating the limitations of entropy methods and shedding light on how to mitigate bias and provide correct interpretations of results, this work can serve as a comprehensive reference for the application of entropy methods and the evaluation of existing studies.
Collapse
Affiliation(s)
- Wanting Xiong
- School of Systems Science, Beijing Normal University, Beijing 100875, People’s Republic of China
- Keck Laboratory for Network Physiology, Department of Physics, Boston University, Boston, Massachusetts 02215, USA
| | - Luca Faes
- Bruno Kessler Foundation and BIOtech, University of Trento, Trento 38123, Italy
| | - Plamen Ch. Ivanov
- Keck Laboratory for Network Physiology, Department of Physics, Boston University, Boston, Massachusetts 02215, USA
- Harvard Medical School and Division of Sleep Medicine, Brigham and Women’s Hospital, Boston, Massachusetts 02115, USA
- Institute of Solid State Physics, Bulgarian Academy of Sciences, Sofia 1784, Bulgaria
| |
Collapse
|
23
|
St Clair Gibson A, Swart J, Tucker R. The interaction of psychological and physiological homeostatic drives and role of general control principles in the regulation of physiological systems, exercise and the fatigue process – The Integrative Governor theory. Eur J Sport Sci 2017; 18:25-36. [DOI: 10.1080/17461391.2017.1321688] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- A. St Clair Gibson
- Faculty of Health, Sport and Human Performance, University of Waikato, Hamilton, New Zealand
| | - J. Swart
- Division of Exercise Science and Sports Medicine, Department of Human Biology, University of Cape Town, Cape Town, South Africa
| | - R. Tucker
- Faculty of Health Sciences, University of the Free State, Bloemfontein, South Africa
| |
Collapse
|
24
|
Refined multiscale fuzzy entropy based on standard deviation for biomedical signal analysis. Med Biol Eng Comput 2017; 55:2037-2052. [PMID: 28462498 PMCID: PMC5644759 DOI: 10.1007/s11517-017-1647-5] [Citation(s) in RCA: 62] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2016] [Accepted: 04/01/2017] [Indexed: 11/30/2022]
Abstract
Multiscale entropy (MSE) has been a prevalent algorithm to quantify the complexity of biomedical time series. Recent developments in the field have tried to alleviate the problem of undefined MSE values for short signals. Moreover, there has been a recent interest in using other statistical moments than the mean, i.e., variance, in the coarse-graining step of the MSE. Building on these trends, here we introduce the so-called refined composite multiscale fuzzy entropy based on the standard deviation (RCMFEσ) and mean (RCMFEμ) to quantify the dynamical properties of spread and mean, respectively, over multiple time scales. We demonstrate the dependency of the RCMFEσ and RCMFEμ, in comparison with other multiscale approaches, on several straightforward signal processing concepts using a set of synthetic signals. The results evidenced that the RCMFEσ and RCMFEμ values are more stable and reliable than the classical multiscale entropy ones. We also inspect the ability of using the standard deviation as well as the mean in the coarse-graining process using magnetoencephalograms in Alzheimer’s disease and publicly available electroencephalograms recorded from focal and non-focal areas in epilepsy. Our results indicated that when the RCMFEμ cannot distinguish different types of dynamics of a particular time series at some scale factors, the RCMFEσ may do so, and vice versa. The results showed that RCMFEσ-based features lead to higher classification accuracies in comparison with the RCMFEμ-based ones. We also made freely available all the Matlab codes used in this study at 10.7488/ds/1477.
Collapse
|
25
|
Namazi H, Akrami A, Kulish VV. The Analysis of the Influence of Odorant's Complexity on Fractal Dynamics of Human Respiration. Sci Rep 2016; 6:26948. [PMID: 27244590 PMCID: PMC4886627 DOI: 10.1038/srep26948] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2016] [Accepted: 05/11/2016] [Indexed: 11/09/2022] Open
Abstract
One of the major challenges in olfaction research is to relate the structural features of the odorants to different features of olfactory system. However, no relationship has been yet discovered between the structure of the olfactory stimulus, and the structure of respiratory signal. This study reveals the plasticity of human respiratory signal in relation to 'complex' olfactory stimulus (odorant). We demonstrated that fractal temporal structure of respiration dynamics shifts towards the properties of the odorants used. The results show for the first time that more structurally complex a monomolecular odorant will result in less fractal respiratory signal. On the other hand, odorant with higher entropy will result the respiratory signal with lower entropy. The capability observed in this research can be further investigated and applied for treatment of patients with different respiratory diseases.
Collapse
Affiliation(s)
- Hamidreza Namazi
- School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore
| | - Amin Akrami
- School of Metallurgy and Material engineering, University of Tehran, Iran
| | - Vladimir V Kulish
- School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore
| |
Collapse
|
26
|
Marwaha P, Sunkaria RK. Optimal Selection of Threshold Value 'r' for Refined Multiscale Entropy. Cardiovasc Eng Technol 2015; 6:557-76. [PMID: 26577486 DOI: 10.1007/s13239-015-0242-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/19/2015] [Accepted: 08/20/2015] [Indexed: 11/25/2022]
Abstract
Refined multiscale entropy (RMSE) technique was introduced to evaluate complexity of a time series over multiple scale factors 't'. Here threshold value 'r' is updated as 0.15 times SD of filtered scaled time series. The use of fixed threshold value 'r' in RMSE sometimes assigns very close resembling entropy values to certain time series at certain temporal scale factors and is unable to distinguish different time series optimally. The present study aims to evaluate RMSE technique by varying threshold value 'r' from 0.05 to 0.25 times SD of filtered scaled time series and finding optimal 'r' values for each scale factor at which different time series can be distinguished more effectively. The proposed RMSE was used to evaluate over HRV time series of normal sinus rhythm subjects, patients suffering from sudden cardiac death, congestive heart failure, healthy adult male, healthy adult female and mid-aged female groups as well as over synthetic simulated database for different datalengths 'N' of 3000, 3500 and 4000. The proposed RMSE results in improved discrimination among different time series. To enhance the computational capability, empirical mathematical equations have been formulated for optimal selection of threshold values 'r' as a function of SD of filtered scaled time series and datalength 'N' for each scale factor 't'.
Collapse
Affiliation(s)
- Puneeta Marwaha
- Department of Electronics and Communication Engineering, Dr. B R Ambedkar National Institute of Technology, Jalandhar, Punjab, 144011, India.
| | - Ramesh Kumar Sunkaria
- Department of Electronics and Communication Engineering, Dr. B R Ambedkar National Institute of Technology, Jalandhar, Punjab, 144011, India.
| |
Collapse
|
27
|
Xu Y, Zhao L. Filter-based multiscale entropy analysis of complex physiological time series. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 88:022716. [PMID: 24032873 DOI: 10.1103/physreve.88.022716] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2012] [Revised: 08/01/2013] [Indexed: 06/02/2023]
Abstract
Multiscale entropy (MSE) has been widely and successfully used in analyzing the complexity of physiological time series. We reinterpret the averaging process in MSE as filtering a time series by a filter of a piecewise constant type. From this viewpoint, we introduce filter-based multiscale entropy (FME), which filters a time series to generate multiple frequency components, and then we compute the blockwise entropy of the resulting components. By choosing filters adapted to the feature of a given time series, FME is able to better capture its multiscale information and to provide more flexibility for studying its complexity. Motivated by the heart rate turbulence theory, which suggests that the human heartbeat interval time series can be described in piecewise linear patterns, we propose piecewise linear filter multiscale entropy (PLFME) for the complexity analysis of the time series. Numerical results from PLFME are more robust to data of various lengths than those from MSE. The numerical performance of the adaptive piecewise constant filter multiscale entropy without prior information is comparable to that of PLFME, whose design takes prior information into account.
Collapse
Affiliation(s)
- Yuesheng Xu
- Department of Mathematics, Syracuse University, Syracuse, New York 13244, USA and Guangdong Province Key Lab of Computational Science, Sun Yat-sen University, Guangzhou 510275, China
| | | |
Collapse
|
28
|
Manor B, Lipsitz LA. Physiologic complexity and aging: implications for physical function and rehabilitation. Prog Neuropsychopharmacol Biol Psychiatry 2013; 45:287-93. [PMID: 22985940 PMCID: PMC3568237 DOI: 10.1016/j.pnpbp.2012.08.020] [Citation(s) in RCA: 98] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/15/2012] [Revised: 08/08/2012] [Accepted: 08/19/2012] [Indexed: 11/28/2022]
Abstract
The dynamics of most healthy physiological processes are complex, in that they are comprised of fluctuations with information-rich structure correlated over multiple temporospatial scales. Lipsitz and Goldberger (1992) first proposed that the aging process may be characterized by a progressive loss of physiologic complexity. We contend that this loss of complexity results in functional decline of the organism by diminishing the range of available, adaptive responses to the innumerable stressors of everyday life. From this relationship, it follows that rehabilitative interventions may be optimized by targeting the complex dynamics of human physiology, and by quantifying their effects using tools derived from complex systems theory. Here, we first discuss several caveats that one must consider when examining the functional and rehabilitative implications of physiologic complexity. We then review available evidence regarding the relationship between physiologic complexity and system functionality, as well as the potential for interventions to restore the complex dynamics that characterize healthy physiological function.
Collapse
Affiliation(s)
- Brad Manor
- Division of Gerontology, Department of Medicine, Beth Israel Deaconess Medical Center, Boston, MA, USA.
| | - Lewis A Lipsitz
- Division of Gerontology, Department of Medicine, Beth Israel Deaconess Medical Center, Boston, MA, USA,Harvard Medical School, Boston, MA, USA,Center for Dynamical Biomarkers and Translational Medicine, National Central University, Taiwan,Institute for Aging Research, Hebrew SeniorLife, Roslindale, MA, USA
| |
Collapse
|
29
|
Soehle M, Gies B, Smielewski P, Czosnyka M. Reduced complexity of intracranial pressure observed in short time series of intracranial hypertension following traumatic brain injury in adults. J Clin Monit Comput 2013; 27:395-403. [PMID: 23306818 DOI: 10.1007/s10877-012-9427-0] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2012] [Accepted: 12/27/2012] [Indexed: 01/08/2023]
Abstract
Physiological parameters, such as intracranial pressure (ICP), are regulated by interconnected feedback loops, resulting in a complex time course. According to the decomplexification theory, disease is characterised by a loss of feedback loops resulting in a reduced complexity of the time course of physiological parameters. We hypothesized that complexity of the ICP time series is decreased during periods of intracranial hypertension (IHT) following adult traumatic brain injury. In an observational retrospective cohort study, ICP was continuously monitored using intraparenchymally implanted probes and stored using ICM + -software. Periods of IHT (ICP > 25 mmHg for at least 1,024 s), were compared with preceding periods of intracranial normotension (ICP < 20 mmHg) and analysed at 1 s-intervals. ICP data (length = 1,024 s) were normalised (mean = 0, SD = 1) and complexity was estimated using the scaling exponent α (as derived from detrended fluctuation analysis), sample entropy (SampEn, m = 1, r = 0.2 × SD) and multiscale entropy. 344 episodes were analysed in 22 patients. During IHT (ICP = 31.7 ± 7.8 mmHg, mean ± SD), α was significantly elevated (α = 1.02 ± 0.22, p < 0.001) and SampEn significantly reduced (SampEn = 1.45 ± 0.46, p = 0.004) as compared to before IHT (ICP = 15.7 ± 3.2 mmHg, α = 0.81 ± 0.14, SampEn = 1.81 ± 0.24). In addition, MSE revealed a significantly (p < 0.05) decreased entropy at scaling factors ranging from 1 to 10. Both the increase in α as well as the decrease in SampEn and MSE indicate a loss of ICP complexity. Therefore following traumatic brain injury, periods of IHT seem to be characterised by a decreased complexity of the ICP waveform.
Collapse
Affiliation(s)
- Martin Soehle
- Department of Anaesthesiology and Intensive Care Medicine, University of Bonn, Sigmund-Freud-Str. 25, 53105, Bonn, Germany.
| | | | | | | |
Collapse
|
30
|
Wayne PM, Manor B, Novak V, Costa MD, Hausdorff JM, Goldberger AL, Ahn AC, Yeh GY, Peng CK, Lough M, Davis RB, Quilty MT, Lipsitz LA. A systems biology approach to studying Tai Chi, physiological complexity and healthy aging: design and rationale of a pragmatic randomized controlled trial. Contemp Clin Trials 2013; 34:21-34. [PMID: 23026349 PMCID: PMC3638751 DOI: 10.1016/j.cct.2012.09.006] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2012] [Revised: 09/21/2012] [Accepted: 09/25/2012] [Indexed: 01/22/2023]
Abstract
INTRODUCTION Aging is typically associated with progressive multi-system impairment that leads to decreased physical and cognitive function and reduced adaptability to stress. Due to its capacity to characterize complex dynamics within and between physiological systems, the emerging field of complex systems biology and its array of quantitative tools show great promise for improving our understanding of aging, monitoring senescence, and providing biomarkers for evaluating novel interventions, including promising mind-body exercises, that treat age-related disease and promote healthy aging. MATERIAL AND METHODS An ongoing, two-arm randomized clinical trial is evaluating the potential of Tai Chi mind-body exercise to attenuate age-related loss of complexity. A total of 60 Tai Chi-naïve healthy older adults (aged 50-79) are being randomized to either six months of Tai Chi training (n=30), or to a waitlist control receiving unaltered usual medical care (n=30). Our primary outcomes are complexity-based measures of heart rate, standing postural sway and gait stride interval dynamics assessed at 3 and 6months. Multiscale entropy and detrended fluctuation analysis are used as entropy- and fractal-based measures of complexity, respectively. Secondary outcomes include measures of physical and psychological function and tests of physiological adaptability also assessed at 3 and 6months. DISCUSSION Results of this study may lead to novel biomarkers that help us monitor and understand the physiological processes of aging and explore the potential benefits of Tai Chi and related mind-body exercises for healthy aging.
Collapse
Affiliation(s)
- Peter M Wayne
- Osher Center for Integrative Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston, MA, USA
| | - Brad Manor
- Department of Gerontology, Beth Israel Deaconess Medical Center, Boston, MA, USA
- Harvard Medical School, Boston, MA, USA
| | - Vera Novak
- Department of Gerontology, Beth Israel Deaconess Medical Center, Boston, MA, USA
- Harvard Medical School, Boston, MA, USA
| | - Madelena D Costa
- Harvard Medical School, Boston, MA, USA
- Division of Interdisciplinary Medicine and Biotechnology, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA
| | - Jeffrey M Hausdorff
- Movement Disorders Unit, Tel-Aviv Sourasky Medical Center; Sackler School of Medicine, Tel-Aviv, Israel
| | - Ary L Goldberger
- Harvard Medical School, Boston, MA, USA
- Division of Interdisciplinary Medicine and Biotechnology, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA
| | - Andrew C Ahn
- Harvard Medical School, Boston, MA, USA
- Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA
- Division of General Medicine and Primary Care, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA
| | - Gloria Y Yeh
- Harvard Medical School, Boston, MA, USA
- Division of General Medicine and Primary Care, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA
| | - C-K Peng
- Division of Interdisciplinary Medicine and Biotechnology, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA
- Center for Dynamical Biomarkers and Translational Medicine, National Central University, Chungli, Taiwan
| | - Matthew Lough
- Institute for Aging Research, Hebrew SeniorLife, Roslindale, MA, USA
| | - Roger B. Davis
- Harvard Medical School, Boston, MA, USA
- Division of General Medicine and Primary Care, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA
| | - Mary T Quilty
- Osher Center for Integrative Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston, MA, USA
| | - Lewis A Lipsitz
- Department of Gerontology, Beth Israel Deaconess Medical Center, Boston, MA, USA
- Harvard Medical School, Boston, MA, USA
- Institute for Aging Research, Hebrew SeniorLife, Roslindale, MA, USA
| |
Collapse
|
31
|
Lu CW, Czosnyka M, Shieh JS, Smielewska A, Pickard JD, Smielewski P. Complexity of intracranial pressure correlates with outcome after traumatic brain injury. Brain 2012; 135:2399-408. [PMID: 22734128 PMCID: PMC3407422 DOI: 10.1093/brain/aws155] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
This study applied multiscale entropy analysis to investigate the correlation between the complexity of intracranial pressure waveform and outcome after traumatic brain injury. Intracranial pressure and arterial blood pressure waveforms were low-pass filtered to remove the respiratory and pulse components and then processed using a multiscale entropy algorithm to produce a complexity index. We identified significant differences across groups classified by the Glasgow Outcome Scale in intracranial pressure, pressure-reactivity index and complexity index of intracranial pressure (P < 0.0001; P = 0.001; P < 0.0001, respectively). Outcome was dichotomized as survival/death and also as favourable/unfavourable. The complexity index of intracranial pressure achieved the strongest statistical significance (F = 28.7; P < 0.0001 and F = 17.21; P < 0.0001, respectively) and was identified as a significant independent predictor of mortality and favourable outcome in a multivariable logistic regression model (P < 0.0001). The results of this study suggest that complexity of intracranial pressure assessed by multiscale entropy was significantly associated with outcome in patients with brain injury.
Collapse
Affiliation(s)
- Cheng-Wei Lu
- 1 Division of Neurosurgery, Department of Clinical Neurosciences, University of Cambridge, Cambridge CB0 2QQ, UK,2 Department of Anaesthesiology, Far-Eastern Memorial Hospital, Taipei 220, Taiwan,3 Department of Mechanical Engineering, Yuan Ze University, Taoyuan 320, Taiwan
| | - Marek Czosnyka
- 1 Division of Neurosurgery, Department of Clinical Neurosciences, University of Cambridge, Cambridge CB0 2QQ, UK
| | - Jiann-Shing Shieh
- 3 Department of Mechanical Engineering, Yuan Ze University, Taoyuan 320, Taiwan
| | - Anna Smielewska
- 4 Department of Virology, Public Health Laboratory, Addenbrooke’s Hospital, Cambridge CB0 2QQ, UK
| | - John D. Pickard
- 1 Division of Neurosurgery, Department of Clinical Neurosciences, University of Cambridge, Cambridge CB0 2QQ, UK
| | - Peter Smielewski
- 1 Division of Neurosurgery, Department of Clinical Neurosciences, University of Cambridge, Cambridge CB0 2QQ, UK
| |
Collapse
|
32
|
Ouyang G, Dang C, Li X. MULTISCALE ENTROPY ANALYSIS OF EEG RECORDINGS IN EPILEPTIC RATS. BIOMEDICAL ENGINEERING-APPLICATIONS BASIS COMMUNICATIONS 2012. [DOI: 10.4015/s1016237209001222] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
In this study, we investigate multiscale entropy (MSE) as a tool to evaluate the dynamic characteristics of electroencephalogram (EEG) during seizure-free, pre-seizure and seizure state, respectively, in epileptic rats. The results show that MSE method is able to reveal that EEG signals are more complex in seizure-free state than in seizure state, and can successfully distinguish among different seizure states. The classification ability of the MSE measures is tested using the linear discriminant analysis (LDA). Test results confirm that the classification accuracy of MSE method is superior to traditional single-scale entropy method. MSE method has potential in classifying the epileptic EEG signals.
Collapse
Affiliation(s)
- Gaoxiang Ouyang
- Department of MEEM, City University of Hong Kong, Kowloon, Hong Kong
| | - Chuangyin Dang
- Department of MEEM, City University of Hong Kong, Kowloon, Hong Kong
| | - Xiaoli Li
- Center for Networking Control and Bioinformatics (CNCB), Yanshan University, Qinhuangdao, China
| |
Collapse
|
33
|
Pan YH, Wang YH, Liang SF, Lee KT. Fast computation of sample entropy and approximate entropy in biomedicine. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2011; 104:382-396. [PMID: 21208680 DOI: 10.1016/j.cmpb.2010.12.003] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2010] [Revised: 11/28/2010] [Accepted: 12/06/2010] [Indexed: 05/30/2023]
Abstract
Both sample entropy and approximate entropy are measurements of complexity. The two methods have received a great deal of attention in the last few years, and have been successfully verified and applied to biomedical applications and many others. However, the algorithms proposed in the literature require O(N(2)) execution time, which is not fast enough for online applications and for applications with long data sets. To accelerate computation, the authors of the present paper have developed a new algorithm that reduces the computational time to O(N(3/2))) using O(N) storage. As biomedical data are often measured with integer-type data, the computation time can be further reduced to O(N) using O(N) storage. The execution times of the experimental results with ECG, EEG, RR, and DNA signals show a significant improvement of more than 100 times when compared with the conventional O(N(2)) method for N=80,000 (N=length of the signal). Furthermore, an adaptive version of the new algorithm has been developed to speed up the computation for short data length. Experimental results show an improvement of more than 10 times when compared with the conventional method for N>4000.
Collapse
Affiliation(s)
- Yu-Hsiang Pan
- Department of Environmental Biology and Fisheries Science, National Taiwan Ocean University, 2 Pei-Ning Road, Keelung 20224, Taiwan.
| | | | | | | |
Collapse
|
34
|
Turianikova Z, Javorka K, Baumert M, Calkovska A, Javorka M. The effect of orthostatic stress on multiscale entropy of heart rate and blood pressure. Physiol Meas 2011; 32:1425-37. [PMID: 21799239 DOI: 10.1088/0967-3334/32/9/006] [Citation(s) in RCA: 66] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Cardiovascular control acts over multiple time scales, which introduces a significant amount of complexity to heart rate and blood pressure time series. Multiscale entropy (MSE) analysis has been developed to quantify the complexity of a time series over multiple time scales. In previous studies, MSE analyses identified impaired cardiovascular control and increased cardiovascular risk in various pathological conditions. Despite the increasing acceptance of the MSE technique in clinical research, information underpinning the involvement of the autonomic nervous system in the MSE of heart rate and blood pressure is lacking. The objective of this study is to investigate the effect of orthostatic challenge on the MSE of heart rate and blood pressure variability (HRV, BPV) and the correlation between MSE (complexity measures) and traditional linear (time and frequency domain) measures. MSE analysis of HRV and BPV was performed in 28 healthy young subjects on 1000 consecutive heart beats in the supine and standing positions. Sample entropy values were assessed on scales of 1-10. We found that MSE of heart rate and blood pressure signals is sensitive to changes in autonomic balance caused by postural change from the supine to the standing position. The effect of orthostatic challenge on heart rate and blood pressure complexity depended on the time scale under investigation. Entropy values did not correlate with the mean values of heart rate and blood pressure and showed only weak correlations with linear HRV and BPV measures. In conclusion, the MSE analysis of heart rate and blood pressure provides a sensitive tool to detect changes in autonomic balance as induced by postural change.
Collapse
Affiliation(s)
- Zuzana Turianikova
- Department of Physiology, Jessenius Faculty of Medicine, Comenius University, Martin, Slovak Republic
| | | | | | | | | |
Collapse
|
35
|
Yuan HK, Lin C, Tsai PH, Chang FC, Lin KP, Hu HH, Su MC, Lo MT. Acute increase of complexity in the neurocardiovascular dynamics following carotid stenting. Acta Neurol Scand 2011; 123:187-92. [PMID: 20569227 DOI: 10.1111/j.1600-0404.2010.01384.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
OBJECTIVE Percutaneous carotid angioplasty and stenting (CAS) has been used to improve cerebral circulation and autoregulation. However, whether CAS ameliorates the autonomic regulatory dynamics remains unclear. This prospective study examines the neurocardiovascular dynamics following carotid stenting. METHODS Thirty minutes electrocardiograms were recorded at three different time points (pre-operative, 1-h post-operative, 1-day post-operative) on twelve male patients (mean age 70.8 ± 9.6 years) receiving unilateral primary CAS. The HR data were analyzed by the conventional heart rate variability (HRV) and the multiscale entropy (MSE) methods; the former associates with autonomic activities and the latter quantifies the regulatory complexity of heart beat intervals. Loss of complexity at multiple scales has been associated with decoupled regulatory network in vivo. RESULTS Conventional HRV indices showed no difference after CAS. Complexity indices increased significantly on scales 2-8 at 1-h and on scales 2-3 1-day post-treatment. The lower scale MSE (1-5) correlated with the frequency components of conventional HRV indices. The increased complexity could imply a restoration of the neurocardiovascular dynamics on the path to a healthier state. CONCLUSIONS Primary CAS can induce a recovery in the neurocardiovascular regulatory dynamics in patients with high-grade carotid stenosis.
Collapse
Affiliation(s)
- H-K Yuan
- Department of Biomedical Engineering, Duke University, Durham, NC, USA
| | | | | | | | | | | | | | | |
Collapse
|
36
|
Jovic A, Bogunovic N. Electrocardiogram analysis using a combination of statistical, geometric, and nonlinear heart rate variability features. Artif Intell Med 2010; 51:175-86. [PMID: 20980134 DOI: 10.1016/j.artmed.2010.09.005] [Citation(s) in RCA: 72] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2009] [Revised: 06/13/2010] [Accepted: 09/10/2010] [Indexed: 11/30/2022]
Abstract
OBJECTIVE The paper addresses a common and recurring problem of electrocardiogram (ECG) classification based on heart rate variability (HRV) analysis. Current understanding of the limits of HRV analysis in diagnosing different cardiac conditions is not complete. Existing research suggests that a combination of carefully selected linear and nonlinear HRV features should significantly improve the accuracy for both binary and multiclass classification problems. The primary goal of this work is to evaluate a proposed combination of HRV features. Other explored objectives are the comparison of different machine learning algorithms in the HRV analysis and the inspection of the most suitable period T between two consecutively analyzed R-R intervals for nonlinear features. METHODS AND MATERIAL We extracted 11 features from 5min of R-R interval recordings: SDNN, RMSSD, pNN20, HRV triangular index (HTI), spatial filling index (SFI), correlation dimension, central tendency measure (CTM), and four approximate entropy features (ApEn1-ApEn4). Analyzed heart conditions included normal heart rhythm, arrhythmia (any), supraventricular arrhythmia, and congestive heart failure. One hundred patient records from six online databases were analyzed, 25 for each condition. Feature vectors were extracted by a platform designed for this purpose, named ECG Chaos Extractor. The vectors were then analyzed by seven clustering and classification algorithms in the Weka system: K-means, expectation maximization (EM), C4.5 decision tree, Bayesian network, artificial neural network (ANN), support vector machines (SVM) and random forest (RF). Four-class and two-class (normal vs. abnormal) classification was performed. Relevance of particular features was evaluated using 1-Rule and C4.5 decision tree in the cases of individual features classification and classification with features' pairs. RESULTS Average total classification accuracy obtained for top three classification methods in the two classes' case was: RF 99.7%, ANN 99.1%, SVM 98.9%. In the four classes' case the best results were: RF 99.6%, Bayesian network 99.4%, SVM 98.4%. The best overall method was RF. C4.5 decision tree was successful in the construction of useful classification rules for the two classes' case. EM and K-means showed comparable clustering results: around 50% for the four classes' case and around 75% for the two classes' case. HTI, pNN20, RMSSD, ApEn3, ApEn4 and SFI were shown to be the most relevant features. HTI in particular appears in most of the top-ranked pairs of features and is the best analyzed feature. The choice of the period T for nonlinear features was shown to be arbitrary. However, a combination of five different periods significantly improved classification accuracy, from 70% for a single period up to 99% for five periods. CONCLUSIONS Analysis shows that the proposed combination of 11 linear and nonlinear HRV features gives high classification accuracy when nonlinear features are extracted for five periods. The features' combination was thoroughly analyzed using several machine learning algorithms. In particular, RF algorithm proved to be highly efficient and accurate in both binary and multiclass classification of HRV records. Interpretable and useful rules were obtained with C4.5 decision tree. Further work in this area should elucidate which features should be extracted for the best classification results for specific types of cardiac disorders.
Collapse
Affiliation(s)
- Alan Jovic
- Department of Electronics, Microelectronics, Computer and Intelligent Systems, Faculty of Electrical Engineering and Computing, Unska 3, HR-10000 Zagreb, Croatia.
| | | |
Collapse
|
37
|
Caminal P, Giraldo BF, Vallverdú M, Benito S, Schroeder R, Voss A. Symbolic dynamic analysis of relations between cardiac and breathing cycles in patients on weaning trials. Ann Biomed Eng 2010; 38:2542-52. [PMID: 20405218 PMCID: PMC2900596 DOI: 10.1007/s10439-010-0027-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2009] [Accepted: 03/25/2010] [Indexed: 11/21/2022]
Abstract
Traditional time-domain techniques of data analysis are often not sufficient to characterize the complex dynamics of the cardiorespiratory interdependencies during the weaning trials. In this paper, the interactions between the heart rate (HR) and the breathing rate (BR) were studied using joint symbolic dynamic analysis. A total of 133 patients on weaning trials from mechanical ventilation were analyzed: 94 patients with successful weaning (group S) and 39 patients that failed to maintain spontaneous breathing (group F). The word distribution matrix enabled a coarse-grained quantitative assessment of short-term nonlinear analysis of the cardiorespiratory interactions. The histogram of the occurrence probability of the cardiorespiratory words presented a higher homogeneity in group F than in group S, measured with a higher number of forbidden words in group S as well as a higher number of words whose probability of occurrence is higher than a probability threshold in group S. The discriminant analysis revealed the best results when applying symbolic dynamic variables. Therefore, we hypothesize that joint symbolic dynamic analysis provides enhanced information about different interactions between HR and BR, when comparing patients with successful weaning and patients that failed to maintain spontaneous breathing in the weaning procedure.
Collapse
Affiliation(s)
- P. Caminal
- Departament ESAII, Universitat Politècnica de Catalunya (UPC), Pau Gargallo, 5, 08028 Barcelona, Spain
- Biomedical Engineering Research Centre (CREB), Universitat Politècnica de Catalunya (UPC), Barcelona, Spain
- CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Barcelona, Spain
| | - B. F. Giraldo
- Departament ESAII, Universitat Politècnica de Catalunya (UPC), Pau Gargallo, 5, 08028 Barcelona, Spain
- CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Barcelona, Spain
- Institut de Bioenginyeria de Catalunya (IBEC), Barcelona, Spain
| | - M. Vallverdú
- Departament ESAII, Universitat Politècnica de Catalunya (UPC), Pau Gargallo, 5, 08028 Barcelona, Spain
- Biomedical Engineering Research Centre (CREB), Universitat Politècnica de Catalunya (UPC), Barcelona, Spain
- CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Barcelona, Spain
| | - S. Benito
- Hospital de la Santa Creu i Sant Pau, Barcelona, Spain
| | - R. Schroeder
- Department of Medical Engineering and Biotechnology, University of Applied Sciences Jena, Jena, Germany
| | - A. Voss
- Department of Medical Engineering and Biotechnology, University of Applied Sciences Jena, Jena, Germany
| |
Collapse
|
38
|
Multiscale analysis of heart beat interval increment series and its clinical significance. CHINESE SCIENCE BULLETIN-CHINESE 2009. [DOI: 10.1007/s11434-009-0596-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
|
39
|
Kang X, Jia X, Geocadin RG, Thakor NV, Maybhate A. Multiscale entropy analysis of EEG for assessment of post-cardiac arrest neurological recovery under hypothermia in rats. IEEE Trans Biomed Eng 2009; 56:1023-31. [PMID: 19174339 DOI: 10.1109/tbme.2008.2011917] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Neurological complications after cardiac arrest (CA) can be fatal. Although hypothermia has been shown to be beneficial, understanding the mechanism and establishing neurological outcomes remains challenging because effects of CA and hypothermia are not well characterized. This paper aims to analyze EEG (and the alpha-rhythms) using multiscale entropy (MSE) to demonstrate the ability of MSE in tracking changes due to hypothermia and compare MSE during early recovery with long-term neurological examinations. Ten Wistar rats, upon post-CA resuscitation, were randomly subjected to hypothermia (32 degrees C-34 degrees C, N = 5) or normothermia (36.5 degrees C-37.5 degrees C, N = 5). EEG was recorded and analyzed using MSE during seven recovery phases for each experiment: baseline, CA, and five early recovery phases (R1-R5). Postresuscitation neurological examination was performed at 6, 24, 48, and 72 h to obtain neurological deficit scores (NDSs). Results showed MSE to be a sensitive marker of changes in alpha-rhythms. Significant difference (p < 0.05) was found between the MSE for two groups during recovery, suggesting that MSE can successfully reflect temperature modulation. A comparison of short-term MSE and long-term NDS suggested that MSE could be used for predicting favorability of long-term outcome. These experiments point to the role of cortical rhythms in reporting early neurological response to ischemia and therapeutic hypothermia.
Collapse
Affiliation(s)
- Xiaoxu Kang
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA.
| | | | | | | | | |
Collapse
|
40
|
Trunkvalterova Z, Javorka M, Tonhajzerova I, Javorkova J, Lazarova Z, Javorka K, Baumert M. Reduced short-term complexity of heart rate and blood pressure dynamics in patients with diabetes mellitus type 1: multiscale entropy analysis. Physiol Meas 2008; 29:817-28. [DOI: 10.1088/0967-3334/29/7/010] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
|