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Choudhary P, Bhatt S, Chatterjee S. From freezing to functioning: cellular strategies of cold-adapted bacteria for surviving in extreme environments. Arch Microbiol 2024; 206:329. [PMID: 38940837 DOI: 10.1007/s00203-024-04058-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2024] [Revised: 06/16/2024] [Accepted: 06/17/2024] [Indexed: 06/29/2024]
Abstract
The ability of cold-adapted bacteria to survive in extreme cold and diverse temperatures is due to their unique attributes like cell membrane stability, up-regulation of peptidoglycan biosynthesis, increased production of extracellular polymeric substances, and expansion of membrane pigment. Various cold-adapted proteins, including ice-nucleating proteins (INPs), antifreeze proteins (AFPs), cold shock proteins (Csps), and cold-acclimated proteins (CAPs), help the bacteria to survive in these environments. To sustain cells from extreme cold conditions and maintain stability in temperature fluctuations, survival strategies at the molecular level and their mechanism play significant roles in adaptations in cryospheric conditions. Furthermore, cold shock domains present in the multifunctional cold shock proteins play crucial roles in their adaptation strategies. The considerable contribution of lipopeptides, osmolytes, and membrane pigments plays an integral part in their survival in extreme environments. This review summarizes the evolutionary history of cold-adapted bacteria and their molecular and cellular adaptation strategies to thrive in harsh cold environments. It also discusses the importance of carotenoids produced, lipid composition, cryoprotectants, proteins, and chaperones related to this adaptation. Furthermore, the functions and mechanisms of adaptations within the cell are discussed briefly. One can utilize and explore their potential in various biotechnology applications and their evolutionary journey by knowing the inherent mechanism of their molecular and cellular adaptation to cold climatic conditions. This review will help all branches of the life science community understand the basic microbiology of psychrophiles and their hidden prospect in life science research.
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Affiliation(s)
- Priyanka Choudhary
- Bioremediation and Metabolomics Research Group, Department of Environmental Sciences, Central University of Himachal Pradesh, Academic Block-Shahpur, Kangra, Himachal Pradesh, 176206, India
| | - Sunidhi Bhatt
- Bioremediation and Metabolomics Research Group, Department of Environmental Sciences, Central University of Himachal Pradesh, Academic Block-Shahpur, Kangra, Himachal Pradesh, 176206, India
| | - Subhankar Chatterjee
- Bioremediation and Metabolomics Research Group, Dept. of Ecology & Environmental Sciences, School of Life Sciences, Pondicherry University, R.V. Nagar, Kalapet, Puducherry, 605014, India.
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2
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Müller T, Schick S, Klemp JS, Sprenger GA, Takors R. Synthetic co-culture in an interconnected two-compartment bioreactor system: violacein production with recombinant E. coli strains. Bioprocess Biosyst Eng 2024; 47:713-724. [PMID: 38627303 PMCID: PMC11093872 DOI: 10.1007/s00449-024-03008-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 03/21/2024] [Indexed: 05/15/2024]
Abstract
The concept of modular synthetic co-cultures holds considerable potential for biomanufacturing, primarily to reduce the metabolic burden of individual strains by sharing tasks among consortium members. However, current consortia often show unilateral relationships solely, without stabilizing feedback control mechanisms, and are grown in a shared cultivation setting. Such 'one pot' approaches hardly install optimum growth and production conditions for the individual partners. Hence, novel mutualistic, self-coordinating consortia are needed that are cultured under optimal growth and production conditions for each member. The heterologous production of the antibiotic violacein (VIO) in the mutually interacting E. coli-E. coli consortium serves as an example of this new principle. Interdependencies for growth control were implemented via auxotrophies for L-tryptophan and anthranilate (ANT) that were satisfied by the respective partner. Furthermore, VIO production was installed in the ANT auxotrophic strain. VIO production, however, requires low temperatures of 20-30 °C which conflicts with the optimum growth temperature of E. coli at 37 °C. Consequently, a two-compartment, two-temperature level setup was used, retaining the mutual interaction of the cells via the filter membrane-based exchange of medium. This configuration also provided the flexibility to perform individualized batch and fed-batch strategies for each co-culture member. We achieved maximum biomass-specific productivities of around 6 mg (g h)-1 at 25 °C which holds great promise for future applications.
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Affiliation(s)
- Tobias Müller
- Institute of Biochemical Engineering, University of Stuttgart, Stuttgart, Germany
| | - Simon Schick
- Institute of Microbiology, University of Stuttgart, Stuttgart, Germany
| | - Jan-Simon Klemp
- Institute of Biochemical Engineering, University of Stuttgart, Stuttgart, Germany
| | - Georg A Sprenger
- Institute of Microbiology, University of Stuttgart, Stuttgart, Germany
| | - Ralf Takors
- Institute of Biochemical Engineering, University of Stuttgart, Stuttgart, Germany.
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Huang C, Chu X, Hui W, Xie C, Xu X. Study on extraction and characterization of new antibiotics violacein from engineered Escherichia coli VioABCDE-SD. Biotechnol Appl Biochem 2023; 70:1582-1596. [PMID: 36898961 DOI: 10.1002/bab.2454] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 02/26/2023] [Indexed: 03/12/2023]
Abstract
To better understand the characteristic properties of violacein biosynthesized by engineered Escherichia coli VioABCDE-SD, a convenient and simplified method was designed to extract violacein and its stability, antimicrobial activity, and antioxidant capacity were analyzed. Different from the traditional extraction methods, our new method is easier and less time consuming and can directly obtain violacein dry powder product with a higher extraction rate. Low temperature, dark condition, neutral pH, reducing agents, Ba2+ , Mn2+ , Ni2+ , Co2+ , and some food additives of sucrose, xylose, and glucose were conducive to maintaining its stability. The violacein also exhibited surprisingly high bacteriostatic action against Gram-positive Bacillus subtilis, Deinococcus radiodurans R1, and Staphylococcus aureus and Gram-negative Pseudomonas aeruginosa, but no effect on E. coli. The violacein of VioABCDE-SD exhibited strong antioxidant activity, with the scavenging rate of 1,1-diphenyl-2-picrylhydrazyl free radicals reaching 60.33%, the scavenging efficiency of hydroxyl radical scavenging reaching 56.34%, and the total antioxidant capacity reaching 0.63 U/mL. Violacein from VioABCDE-SD can be synthesized directionally with better stability, antibacterial, and antioxidant properties compared with that from the original strain Janthinobacterium sp. B9-8. Therefore, our study indicated that violacein from engineered E. coli VioABCDE-SD was a kind of new antibiotic with potential biological activities, which may have potential utility in multiple areas such as pharmacological, cosmetics, and healthy food industries.
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Affiliation(s)
- Chunyan Huang
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, Jiangsu Province, China
| | - Xiaoting Chu
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, Jiangsu Province, China
| | - Wenyang Hui
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, Jiangsu Province, China
| | - Chengjia Xie
- School of Chemical Engineering, Yangzhou Polytechnic Institute, Yangzhou, Jiangsu Province, China
| | - Xian Xu
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, Jiangsu Province, China
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Nemer G, Louka N, Rabiller Blandin P, Maroun RG, Vorobiev E, Rossignol T, Nicaud JM, Guénin E, Koubaa M. Purification of Natural Pigments Violacein and Deoxyviolacein Produced by Fermentation Using Yarrowia lipolytica. Molecules 2023; 28:4292. [PMID: 37298767 PMCID: PMC10254742 DOI: 10.3390/molecules28114292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 05/14/2023] [Accepted: 05/19/2023] [Indexed: 06/12/2023] Open
Abstract
Violacein and deoxyviolacein are bis-indole pigments synthesized by a number of microorganisms. The present study describes the biosynthesis of a mixture of violacein and deoxyviolacein using a genetically modified Y. lipolytica strain as a production chassis, the subsequent extraction of the intracellular pigments, and ultimately their purification using column chromatography. The results show that the optimal separation between the pigments occurs using an ethyl acetate/cyclohexane mixture with different ratios, first 65:35 until both pigments were clearly visible and distinguishable, then 40:60 to create a noticeable separation between them and recover the deoxyviolacein, and finally 80:20, which allows the recovery of the violacein. The purified pigments were then analyzed by thin-layer chromatography and nuclear magnetic resonance.
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Affiliation(s)
- Georgio Nemer
- Université de Technologie de Compiègne, ESCOM, TIMR (Integrated Transformations of Renewable Matter), Centre de Recherche Royallieu—CS 60319, 60203 Compiègne CEDEX, France; (G.N.); (P.R.B.); (E.V.); (E.G.)
- Laboratoire CTA, UR TVA, Centre d’Analyses et de Recherche, Faculté des Sciences, Université Saint-Joseph, Beyrouth 1104 2020, Lebanon; (N.L.); (R.G.M.)
| | - Nicolas Louka
- Laboratoire CTA, UR TVA, Centre d’Analyses et de Recherche, Faculté des Sciences, Université Saint-Joseph, Beyrouth 1104 2020, Lebanon; (N.L.); (R.G.M.)
| | - Paul Rabiller Blandin
- Université de Technologie de Compiègne, ESCOM, TIMR (Integrated Transformations of Renewable Matter), Centre de Recherche Royallieu—CS 60319, 60203 Compiègne CEDEX, France; (G.N.); (P.R.B.); (E.V.); (E.G.)
| | - Richard G. Maroun
- Laboratoire CTA, UR TVA, Centre d’Analyses et de Recherche, Faculté des Sciences, Université Saint-Joseph, Beyrouth 1104 2020, Lebanon; (N.L.); (R.G.M.)
| | - Eugène Vorobiev
- Université de Technologie de Compiègne, ESCOM, TIMR (Integrated Transformations of Renewable Matter), Centre de Recherche Royallieu—CS 60319, 60203 Compiègne CEDEX, France; (G.N.); (P.R.B.); (E.V.); (E.G.)
| | - Tristan Rossignol
- Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, 78350 Jouy-en-Josas, France; (T.R.); (J.-M.N.)
| | - Jean-Marc Nicaud
- Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, 78350 Jouy-en-Josas, France; (T.R.); (J.-M.N.)
| | - Erwann Guénin
- Université de Technologie de Compiègne, ESCOM, TIMR (Integrated Transformations of Renewable Matter), Centre de Recherche Royallieu—CS 60319, 60203 Compiègne CEDEX, France; (G.N.); (P.R.B.); (E.V.); (E.G.)
| | - Mohamed Koubaa
- Université de Technologie de Compiègne, ESCOM, TIMR (Integrated Transformations of Renewable Matter), Centre de Recherche Royallieu—CS 60319, 60203 Compiègne CEDEX, France; (G.N.); (P.R.B.); (E.V.); (E.G.)
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Bacterial Pigments and Their Multifaceted Roles in Contemporary Biotechnology and Pharmacological Applications. Microorganisms 2023; 11:microorganisms11030614. [PMID: 36985186 PMCID: PMC10053885 DOI: 10.3390/microorganisms11030614] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 02/06/2023] [Accepted: 02/07/2023] [Indexed: 03/05/2023] Open
Abstract
Synthetic dyes and colourants have been the mainstay of the pigment industry for decades. Researchers are eager to find a more environment friendly and non-toxic substitute because these synthetic dyes have a negative impact on the environment and people’s health. Microbial pigments might be an alternative to synthetic pigments. Microbial pigments are categorized as secondary metabolites and are mainly produced due to impaired metabolism under stressful conditions. These pigments have vibrant shades and possess nutritional and therapeutic properties compared to synthetic pigment. Microbial pigments are now widely used within the pharmaceuticals, food, paints, and textile industries. The pharmaceutical industries currently use bacterial pigments as a medicine alternative for cancer and many other bacterial infections. Their growing popularity is a result of their low cost, biodegradable, non-carcinogenic, and environmentally beneficial attributes. This audit article has made an effort to take an in-depth look into the existing uses of bacterial pigments in the food and pharmaceutical industries and project their potential future applications.
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Thakur M, Modi VK. Biocolorants in food: Sources, extraction, applications and future prospects. Crit Rev Food Sci Nutr 2022; 64:4674-4713. [PMID: 36503345 DOI: 10.1080/10408398.2022.2144997] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Color of a food is one of the major factors influencing its acceptance by consumers. At presently synthetic dyes are the most commonly used food colorant in food industry by providing more esthetically appearance and as a means to quality control. However, the growing concern about health and environmental due to associated toxicity with synthetic food colorants has accelerated the global efforts to replace them with safer and healthy food colorants obtained from natural resources (plants, microorganisms, and animals). Further, many of these biocolorants not only provide myriad of colors to the food but also exert biological properties, thus they can be used as nutraceuticals in foods and beverages. In order to understand the importance of nature-derived pigments as food colorants, this review provides a thorough discussion on the natural origin of food colorants. Following this, different extraction methods for isolating biocolorants from plants and microbes were also discussed. Many of these biocolorants not only provide color, but also have many health promoting properties, for this reason their physicochemical and biological properties were also reviewed. Finally, current trends on the use of biocolorants in foods, and the challenges faced by the biocolorants in their effective utilization by food industry and possible solutions to these challenges were discussed.
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Affiliation(s)
- Monika Thakur
- Amity Institute of Food Technology, Amity University, Noida, Uttar Pradesh, India
| | - V K Modi
- Amity Institute of Food Technology, Amity University, Noida, Uttar Pradesh, India
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Lyakhovchenko NS, Travkin VM, Senchenkov VY, Solyanikova IP. Bacterial Violacein: Properties, Biosynthesis and Application Prospects. APPL BIOCHEM MICRO+ 2022. [DOI: 10.1134/s0003683822060072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2022]
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8
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Development of Methylorubrum extorquens AM1 as a promising platform strain for enhanced violacein production from co-utilization of methanol and acetate. Metab Eng 2022; 72:150-160. [PMID: 35301124 DOI: 10.1016/j.ymben.2022.03.008] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Revised: 02/16/2022] [Accepted: 03/10/2022] [Indexed: 11/21/2022]
Abstract
Violacein, a blue-violet compound with a wide range of beneficial bioactivities, is an attractive product for microbial production. Currently, violacein production has been demonstrated in several sugar heterotrophs through metabolic engineering; however, the cost of production remains an obstacle for business ventures. To address this issue, the development of host strains that can utilize inexpensive alternative substrates to reduce production costs would enable the commercialization of violacein. In this study, we engineered a facultative methylotroph, Methylorubrum extorquens AM1, to develop a methanol-based platform for violacein production. By optimizing expression vectors as well as inducer concentrations, 11.7 mg/L violacein production was first demonstrated using methanol as the sole substrate. Considering that unidentified bottlenecks for violacein biosynthesis in the shikimate pathway of M. extorquens AM1 would be difficult to address using generic metabolic engineering approaches, random mutagenesis and site-directed mutagenesis were implemented, and a 2-fold improvement in violacein production was achieved. Finally, by co-utilization of methanol and acetate, a remarkable enhancement of violacein production to 118 mg/L was achieved. Our results establish a platform strain for violacein production from non-sugar feedstocks, which may contribute to the development of an economically efficient large-scale fermentation system for violacein production.
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Culturable Bacterial Isolates from Arctic Soil shows High Biotechnological Potential. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2022. [DOI: 10.22207/jpam.16.1.13] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Polar microbiology remains as the most fascinating area of research which mainly focuses on exploration of psychrophilic organisms for having their cold-active enzymes of biotechnological potential. In this study, we have explored a culturable bacterial community and isolated 27 bacterial isolates with a different morphology from an unexplored site of Arctic region, for the possibility of identifying various active biomolecules. Screening of various isolates in a culture dependent manner helped us to identify strains capable of producing extracellular enzymes. The optimal growth parameters of most of the isolates are ranges between 18-22°C temperature, 3-5 days of incubation, 6-9 pH, and 3-5% (w/v) NaCl in LB media. It has also been found that among these isolates, 63% are able to produce lipase, 17% amylase, 7% xylanase and 7% isolates have responded for phosphatase activity but there are no isolates found for gelatinase and cellulase production ability. In addition, few isolates can also produce secretory protease, urease, β-galactosidase, etc. 16SrRNA gene sequence-based phylogeny revealed that the isolates belong to the genera of Psychrobacter, Planococcus, Halomonas, Arthrobacter, Oceanisphaera, Marinbacter, Pseudomonas, Algoriphagus. Strikingly, none of the Arctic isolates showed resistance towards commonly used antibiotics which indicates that the unexplored habitat is devoid of antibiotic exposure and so does the rise of antimicrobial resistance. The structure-function relationship of the isolated bioactive compounds from these isolates are the major focus of future research.
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Ahmed A, Ahmad A, Li R, AL-Ansi W, Fatima M, Mushtaq BS, Basharat S, Li Y, Bai Z. Recent Advances in Synthetic, Industrial and Biological Applications of Violacein and Its Heterologous Production. J Microbiol Biotechnol 2021; 31:1465-1480. [PMID: 34584039 PMCID: PMC9705886 DOI: 10.4014/jmb.2107.07045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Revised: 09/15/2021] [Accepted: 09/26/2021] [Indexed: 12/15/2022]
Abstract
Violacein, a purple pigment first isolated from a gram-negative coccobacillus Chromobacterium violaceum, has gained extensive research interest in recent years due to its huge potential in the pharmaceutic area and industry. In this review, we summarize the latest research advances concerning this pigment, which include (1) fundamental studies of its biosynthetic pathway, (2) production of violacein by native producers, apart from C. violaceum, (3) metabolic engineering for improved production in heterologous hosts such as Escherichia coli, Citrobacter freundii, Corynebacterium glutamicum, and Yarrowia lipolytica, (4) biological/pharmaceutical and industrial properties, (5) and applications in synthetic biology. Due to the intrinsic properties of violacein and the intermediates during its biosynthesis, the prospective research has huge potential to move this pigment into real clinical and industrial applications.
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Affiliation(s)
- Aqsa Ahmed
- School of Biotechnology, Jiangnan University, Wuxi 214122, P.R. China,National Engineering Laboratory for Cereal Fermentation Technology, Jiangnan University, Wuxi 214122, P.R. China
| | - Abdullah Ahmad
- Department of Industrial Biotechnology, Atta-Ur-Rahman School of Applied Biosciences, National University of Science and Technology, Islamabad 44000, Pakistan
| | - Renhan Li
- School of Biotechnology, Jiangnan University, Wuxi 214122, P.R. China,National Engineering Laboratory for Cereal Fermentation Technology, Jiangnan University, Wuxi 214122, P.R. China
| | - Waleed AL-Ansi
- School of Food Science and Technology, State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Avenue, Wuxi 214122, P.R. China,Department of Food Science and Technology, Faculty of Agriculture, Sana’a University, Sana’a, 725, Yemen
| | - Momal Fatima
- Department of Industrial Biotechnology, National Institute of Biotechnology and Genetic Engineering (NIBGE), Faisalabad 38000, Pakistan
| | - Bilal Sajid Mushtaq
- School of Food Science and Technology, State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Avenue, Wuxi 214122, P.R. China
| | - Samra Basharat
- School of Biotechnology, Jiangnan University, Wuxi 214122, P.R. China
| | - Ye Li
- School of Biotechnology, Jiangnan University, Wuxi 214122, P.R. China,National Engineering Laboratory for Cereal Fermentation Technology, Jiangnan University, Wuxi 214122, P.R. China,Corresponding authors Y. Li E-mail:
| | - Zhonghu Bai
- School of Biotechnology, Jiangnan University, Wuxi 214122, P.R. China,National Engineering Laboratory for Cereal Fermentation Technology, Jiangnan University, Wuxi 214122, P.R. China,
Z. Bai Phone: +86510-85197983 Fax: +86510-85197983 E-mail:
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Ward CS, Rolison K, Li M, Rozen S, Fisher CL, Lane TW, Thelen MP, Stuart RK. Janthinobacter additions reduce rotifer grazing of microalga Microchloropsis salina in biotically complex communities. ALGAL RES 2021. [DOI: 10.1016/j.algal.2021.102400] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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12
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Carotenoids produced by the deep-sea bacterium Erythrobacter citreus LAMA 915: detection and proposal of their biosynthetic pathway. Folia Microbiol (Praha) 2021; 66:441-456. [PMID: 33723710 DOI: 10.1007/s12223-021-00858-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Accepted: 02/24/2021] [Indexed: 10/21/2022]
Abstract
Technologies based on synthetic biology to produce bacterial natural carotenoids depend on information regarding their biosynthesis. Although the biosynthetic pathway of common carotenoids is known, there are carotenoids whose pathways are not completely described. This work aimed to mine the genome of the deep-sea bacterium Erythrobacter citreus LAMA 915, an uncommon bacterium that forms yellow colonies under cultivation. This work further explores the potential application of the carotenoids found and low-cost substrates for bacterial growth. A combined approach of genome mining and untargeted metabolomics analysis was applied. The carotenoid erythroxanthin sulfate was detected in E. citreus LAMA 915 cell extract. A proposal for carotenoid biosynthesis by this bacterium is provided, involving the genes crtBIYZWG. These are responsible for the biosynthesis of carotenoids from the zeaxanthin pathway and their 2,2'-hydroxylated derivatives. E. citreus LAMA 915 extracts showed antioxidant and sun protection effects. Based on the high content of proteases and lipases, it was possible to rationally select substrates for bacterial growth, with residual oil from fish processing the best low-cost substrate selected. This work advances in the understanding of carotenoid biosynthesis and provides a genetic basis that can be further explored as a biotechnological route for carotenoid production.
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13
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Mechanical Cell Disruption Technologies for the Extraction of Dyes and Pigments from Microorganisms: A Review. FERMENTATION-BASEL 2021. [DOI: 10.3390/fermentation7010036] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
The production of pigments using single cell microorganisms is gaining traction as a sustainable alternative to conventional syntheses, which rely, in no negligible proportions, on petrochemicals. In addition to depending on petroleum, these syntheses involved the use of toxic organic solvents, which may be inadequately disposed of across a range of industries, thus compounding the deleterious effects of fossil fuel exploitation. Literature suggests that notable research efforts in the area of sustainable pigment production using single cell microorganisms are focused on the production of pigments coveted for their interesting qualities, which transcend their mere capacity to dye various fabrics both natural and synthetic. As interest in sustainable pigment biosynthesis grows, the need to devise effective and efficient cell disruption processes becomes more pressing given that the viability of pigment biosynthesis is not only dependent on microorganisms’ yield in terms of production, but also on researchers’ ability to recover them. This review chiefly reports findings as to mechanical cell disruption methods, used individually or in various combinations, and their aptitude to recover biosynthetic pigments.
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Dasgupta Mandal D, Majumdar S, Dey S, Dutta S, Mandal T. Utilization of Low-Cost Fatty Acid Sources by Bacterial Isolate for Improved Production of Valuable Prodigiosin. LECTURE NOTES IN BIOENGINEERING 2021. [DOI: 10.1007/978-981-15-7409-2_3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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15
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Souza Mesquita LM, Martins M, Pisani LP, Ventura SPM, Rosso VV. Insights on the use of alternative solvents and technologies to recover bio‐based food pigments. Compr Rev Food Sci Food Saf 2020; 20:787-818. [DOI: 10.1111/1541-4337.12685] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Revised: 09/24/2020] [Accepted: 11/06/2020] [Indexed: 01/01/2023]
Affiliation(s)
- Leonardo M. Souza Mesquita
- Department of Biosciences Federal University of São Paulo (UNIFESP) Santos Brazil
- Department of Chemistry CICECO − Aveiro Institute of Materials, Campus Universitário de Santiago University of Aveiro Portugal
| | - Margarida Martins
- Department of Chemistry CICECO − Aveiro Institute of Materials, Campus Universitário de Santiago University of Aveiro Portugal
| | - Luciana P. Pisani
- Department of Biosciences Federal University of São Paulo (UNIFESP) Santos Brazil
| | - Sónia P. M. Ventura
- Department of Chemistry CICECO − Aveiro Institute of Materials, Campus Universitário de Santiago University of Aveiro Portugal
| | - Veridiana V. Rosso
- Department of Biosciences Federal University of São Paulo (UNIFESP) Santos Brazil
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Majumdar S, Paul I, Dey S, Dutta S, Mandal T, Mandal DD. Biotransformation of paper mill sludge by Serratia marcescens NITDPER1 for prodigiosin and cellulose nanocrystals: A strategic valorization approach. Biochem Eng J 2020. [DOI: 10.1016/j.bej.2020.107766] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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17
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Ruan Y, Wang T, Guo S, Ling N, Shen Q. Plant Grafting Shapes Complexity and Co-occurrence of Rhizobacterial Assemblages. MICROBIAL ECOLOGY 2020; 80:643-655. [PMID: 32514604 DOI: 10.1007/s00248-020-01532-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Accepted: 05/25/2020] [Indexed: 06/11/2023]
Abstract
Grafting is a basic technique which is widely used to increase yield and enhance biotic and abiotic stress tolerance in plant production. The diversity and interactions of rhizobacterial assemblages shaped by grafting are important for the growth of their hosts but remain poorly understood. To test the hypothesis that plant grafting shapes complexity and co-occurrence of rhizobacterial assemblage, four types of plants, including ungrafted bottle gourd (B), ungrafted watermelon (W), grafted watermelon with bottle gourd rootstock (W/B), and grafted bottle gourd with watermelon rootstock (B/W), were cultivated in two soil types in a greenhouse, and the rhizosphere bacterial communities were analyzed by 16S rRNA gene high-throughput sequencing. Both the soil type and grafting significantly influenced the bacterial community composition. Grafting increased bacterial within-sample diversity in both soils. Core enriched operational taxonomic units (OTUs) in the W/B rhizosphere compared with the other three treatments (B, W, and B/W) were mainly affiliated with Alphaproteobacteria, Deltaproteobacteria, and Bacteroidetes, which are likely related to methanol oxidation, methylotrophy, fermentation, and ureolysis. Co-occurrence network analysis proved that grafting increased network complexity, including the number of nodes, edges, and modules. Moreover, grafting strengthened the structural robustness of the network in the rhizosphere, while ungrafted watermelon had the lowest network robustness. Homogeneous selection played a predominant role in bacterial community assembly, and the contribution of dispersal limitation was increased in grafted watermelon with bottle gourd rootstock. Grafting increased the diversity and transformed the network topology of the bacterial community, which indicated that grafting could improve species coexistence in the watermelon rhizosphere.
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Affiliation(s)
- Yang Ruan
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing, 210095, China
| | - Tingting Wang
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing, 210095, China
| | - Shiwei Guo
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing, 210095, China
| | - Ning Ling
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing, 210095, China.
| | - Qirong Shen
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing, 210095, China
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Alem D, Marizcurrena JJ, Saravia V, Davyt D, Martinez-Lopez W, Castro-Sowinski S. Production and antiproliferative effect of violacein, a purple pigment produced by an Antarctic bacterial isolate. World J Microbiol Biotechnol 2020; 36:120. [DOI: 10.1007/s11274-020-02893-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Accepted: 07/11/2020] [Indexed: 12/22/2022]
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20
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Sajjad W, Din G, Rafiq M, Iqbal A, Khan S, Zada S, Ali B, Kang S. Pigment production by cold-adapted bacteria and fungi: colorful tale of cryosphere with wide range applications. Extremophiles 2020; 24:447-473. [PMID: 32488508 PMCID: PMC7266124 DOI: 10.1007/s00792-020-01180-2] [Citation(s) in RCA: 58] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 05/18/2020] [Indexed: 12/18/2022]
Abstract
Pigments are an essential part of everyday life on Earth with rapidly growing industrial and biomedical applications. Synthetic pigments account for a major portion of these pigments that in turn have deleterious effects on public health and environment. Such drawbacks of synthetic pigments have shifted the trend to use natural pigments that are considered as the best alternative to synthetic pigments due to their significant properties. Natural pigments from microorganisms are of great interest due to their broader applications in the pharmaceutical, food, and textile industry with increasing demand among the consumers opting for natural pigments. To fulfill the market demand of natural pigments new sources should be explored. Cold-adapted bacteria and fungi in the cryosphere produce a variety of pigments as a protective strategy against ecological stresses such as low temperature, oxidative stresses, and ultraviolet radiation making them a potential source for natural pigment production. This review highlights the protective strategies and pigment production by cold-adapted bacteria and fungi, their industrial and biomedical applications, condition optimization for maximum pigment extraction as well as the challenges facing in the exploitation of cryospheric microorganisms for pigment extraction that hopefully will provide valuable information, direction, and progress in forthcoming studies.
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Affiliation(s)
- Wasim Sajjad
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Ghufranud Din
- Department of Microbiology, Quaid-I-Azam University, Islamabad, 45320, Pakistan
| | - Muhammad Rafiq
- Department of Microbiology, Faculty of Life Sciences and Informatics, Balochistan University of IT, Engineering and Management Sciences, Quetta, Pakistan
| | - Awais Iqbal
- School of Life Sciences, State Key Laboratory of Grassland Agro-Ecosystems, Lanzhou University, Lanzhou, People's Republic of China
| | - Suliman Khan
- The Department of Cerebrovascular Diseases, The Second Affiliated Hospital of Zhengzhou University, Zhengzhou, China
| | - Sahib Zada
- Department of Biology, College of Science, Shantou University, Shantou, China
| | - Barkat Ali
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Shichang Kang
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, 730000, China.
- CAS Center for Excellence in Tibetan Plateau Earth Sciences, Beijing, China.
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21
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Majumdar S, Mandal T, Dasgupta Mandal D. Production kinetics of β-carotene from Planococcus sp. TRC1 with concomitant bioconversion of industrial solid waste into crystalline cellulose rich biomass. Process Biochem 2020. [DOI: 10.1016/j.procbio.2020.01.012] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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22
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Cao M, Gao M, Suástegui M, Mei Y, Shao Z. Building microbial factories for the production of aromatic amino acid pathway derivatives: From commodity chemicals to plant-sourced natural products. Metab Eng 2020; 58:94-132. [DOI: 10.1016/j.ymben.2019.08.008] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Revised: 08/03/2019] [Accepted: 08/07/2019] [Indexed: 01/23/2023]
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Choi SY, Lim S, Cho G, Kwon J, Mun W, Im H, Mitchell RJ. Chromobacterium violaceum delivers violacein, a hydrophobic antibiotic, to other microbes in membrane vesicles. Environ Microbiol 2020; 22:705-713. [PMID: 31814287 DOI: 10.1111/1462-2920.14888] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Revised: 12/05/2019] [Accepted: 12/05/2019] [Indexed: 12/01/2022]
Abstract
This study describes Chromobacterium violaceum's use of extracellular membrane vesicles (MVs) to both solubilize and transport violacein to other microorganisms. Violacein is a hydrophobic bisindole with known antibiotic activities against other microorganisms. Characterization of the MVs found they carried more violacein than protein (1.37 ± 0.19-fold), suggesting they may act as a reservoir for this compound. However, MVs are not produced in response to violacein - a ΔvioA isogenic mutant, which is incapable of making violacein, actually produced significantly more MVs (3.2-fold) than the wild-type strain. Although violacein is insoluble in water (Log Poctanol:water = 3.34), 79.5% remained in the aqueous phase when it was present within the C. violaceum MVs, an increase in solubility of 1740-fold. Moreover, tests with a strain of Staphylococcus aureus showed MV-associated violacein is bactericidal, with 3.1 mg/l killing 90% of S. aureus in 6 h. Tests with the ΔvioA MVs found no loss in the S. aureus viability, even when its MVs were added at much higher concentrations, demonstrating violacein is the active component within the wild-type MVs. In conclusion, our study clearly demonstrates C. violaceum produces MVs and uses them as vehicles to solubilize violacein and transport this hydrophobic antibiotic to other microbes.
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Affiliation(s)
- Seong Yeol Choi
- Applied and Environmental Microbiology Lab, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, South Korea
| | - Sungbin Lim
- Applied and Environmental Microbiology Lab, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, South Korea
| | - Gayoung Cho
- Applied and Environmental Microbiology Lab, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, South Korea
| | - Jisoo Kwon
- Applied and Environmental Microbiology Lab, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, South Korea
| | - Wonsik Mun
- Applied and Environmental Microbiology Lab, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, South Korea
| | - Hansol Im
- Applied and Environmental Microbiology Lab, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, South Korea
| | - Robert J Mitchell
- Applied and Environmental Microbiology Lab, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, South Korea
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Pires TCSP, Caleja C, Santos-Buelga C, Barros L, Ferreira IC. Vaccinium myrtillus L. Fruits as a Novel Source of Phenolic Compounds with Health Benefits and Industrial Applications - A Review. Curr Pharm Des 2020; 26:1917-1928. [PMID: 32183662 PMCID: PMC7403651 DOI: 10.2174/1381612826666200317132507] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2019] [Accepted: 03/08/2020] [Indexed: 12/21/2022]
Abstract
Consumers' demand for healthier foods with functional properties has had a clear influence on the food industry and in this sense, they have been attaching natural sources of bioactive ingredients into food products. Vaccinium myrtillus L. (bilberry) is known to be a functional food, presenting its fruits in the form of a small dark blueberry. This coloration is due to its high content in anthocyanin, being also associated with bilberries' beneficial health effects. In the bilberry industry, there is a very high annual loss of this fruit due to the less aesthetic shape or appearance, in which they cannot be considered suitable for sale and are therefore disposed of as biological waste. Therefore, it is of great importance to valorize this fruit and this review aimed to completely characterize the fruits of V. myrtillus in order to comprehend the relationship between their consumption and the beneficial effects regarding consumer's health. Thus, this review provides a description of the nutritional and bioactive compounds present in bilberry fruits, followed by their beneficial health effects. An overview of the natural pigments present in these fruits was also explored, focusing particularly in the anthocyanins composition, which represents the most widely studied class of bioactive compounds of V. myrtillus fruits. Finally, industrial applications of these fruits and by-products, as an efficient approach to the production of value-added products with economical and environmental impact, were also discussed. In general, V. myrtillus is a rich source of micronutrients and phytochemical compounds, such as organic acids, sugars, vitamins, fibers and phenolic compounds (anthocyanin and non-anthocyanin compounds), with nutritional and functional properties, that justify the growing interest in these berries, not only for food applications, but also in the pharmaceutical industry.
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Affiliation(s)
| | | | | | - Lillian Barros
- Address correspondence to these authors at the Centro de Investigação de Montanha (CIMO), Instituto Politécnico de Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal; Tel: +351273303219; Fax: +351273325405; E-mail: ; Tel: +351273303285; Fax: +351273325405; E-mail:
| | - Isabel C.F.R. Ferreira
- Address correspondence to these authors at the Centro de Investigação de Montanha (CIMO), Instituto Politécnico de Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal; Tel: +351273303219; Fax: +351273325405; E-mail: ; Tel: +351273303285; Fax: +351273325405; E-mail:
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25
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Petrushin IS, Belikov SI, Chernogor LI. Draft Genome Sequence of Janthinobacterium sp. Strain SLB01, Isolated from the Diseased Sponge Lubomirskia baicalensis. Microbiol Resour Announc 2019; 8:e01108-19. [PMID: 31699764 PMCID: PMC6838622 DOI: 10.1128/mra.01108-19] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2019] [Accepted: 10/16/2019] [Indexed: 11/20/2022] Open
Abstract
The draft genome sequence of Janthinobacterium sp. strain SLB01, a violacein-producing psychrotolerant bacterium isolated from the diseased sponge Lubomirskia baicalensis, was determined. We identified five genes encoding VioA, VioB, VioC, VioD, and VioE proteins related to violacein biosynthesis that were like those identified in published Janthinobacterium lividum strains MTR and RIT308.
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Affiliation(s)
- Ivan S Petrushin
- Limnological Institute, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russia
- Irkutsk State University, Irkutsk, Russia
| | - Sergei I Belikov
- Limnological Institute, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russia
| | - Lubov I Chernogor
- Limnological Institute, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russia
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26
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Isolation and characterization of violacein from an Antarctic Iodobacter: a non-pathogenic psychrotolerant microorganism. Extremophiles 2019; 24:43-52. [DOI: 10.1007/s00792-019-01111-w] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2019] [Accepted: 06/17/2019] [Indexed: 10/26/2022]
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27
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Gao A, Chen H, Hou A, Xie K. Efficient antimicrobial silk composites using synergistic effects of violacein and silver nanoparticles. MATERIALS SCIENCE & ENGINEERING. C, MATERIALS FOR BIOLOGICAL APPLICATIONS 2019; 103:109821. [PMID: 31349531 DOI: 10.1016/j.msec.2019.109821] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Revised: 04/29/2019] [Accepted: 05/27/2019] [Indexed: 10/26/2022]
Abstract
Violacein, a natural violet biopigment with efficient bioactivities from Gram-negative bacteria, possesses good affinity to silk fiber and complexes with silver. In this paper, a new approach involving the surface modification of silk fabrics with violacein for the in-situ synthesis of silver nanoparticles (SNPs) was developed. Violacein is used to modify silk material. Subsequently, silk containing bio-violacein was in situ assembled by silver ions and formed SNPs. Functional silk composites (FSC) containing bio-violacein and SNPs were obtained with effective synergistic antimicrobial effects. FSC were characterized by FT-IR spectroscopy, UV-visible absorption spectroscopy, and scanning electron microscopy/energy dispersive spectroscopy, and X-ray diffraction. Exhaustion and amount of violacein on silk fabric were 65.82% and 0.16 g/g, respectively. SNPs were small particles with irregular shapes and sizes <60-70 nm. Antimicrobial activities of the FSC were evaluated against S. aureus, E. coli, and C. albicans. The silk fabric with violacein possessed good antimicrobial activity against S. aureus, with a bacterial reduction of 81.25%. FSC with violacein combined with SNPs integration exhibited good synergistic properties as excellent antimicrobial activities against S. aureus, E. coli, and C. albicans, with microbial reductions of 99.98%, 99.90%, and 99.85%, respectively. FSC not only exhibited the enhanced antimicrobial effects but also exhibited a broadened antimicrobial range.
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Affiliation(s)
- Aiqin Gao
- College of Chemistry, Chemical Engineering and Biotechnology, Donghua University, Shanghai 201620, China
| | - Huanghuang Chen
- College of Chemistry, Chemical Engineering and Biotechnology, Donghua University, Shanghai 201620, China
| | - Aiqin Hou
- National Engineering Research Center for Dyeing and Finishing of Textiles, Donghua University, Shanghai 201620, China
| | - Kongliang Xie
- College of Chemistry, Chemical Engineering and Biotechnology, Donghua University, Shanghai 201620, China.
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28
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Xu X, Tian L, Zhang S, Jiang L, Zhang Z, Huang H. Complete genome sequence of Janthinobacterium sp. B9-8, a violacein-producing bacterium isolated from low-temperature sewage. Microb Pathog 2019; 128:178-183. [DOI: 10.1016/j.micpath.2019.01.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 12/30/2018] [Accepted: 01/02/2019] [Indexed: 10/27/2022]
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29
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Azman AS, Mawang CI, Abubakar S. Bacterial Pigments: The Bioactivities and as an Alternative for Therapeutic Applications. Nat Prod Commun 2018. [DOI: 10.1177/1934578x1801301240] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Synthetic pigments have been widely used in various applications since the 1980s. However, the hyperallergenicity or carcinogenicity effects of synthetic dyes have led to the increased research on natural pigments. Among the natural resources, bacterial pigments are a good alternative to synthetic pigments because of their significant properties. Bacterial pigments are also one of the emerging fields of research since it offers promising opportunities for different applications. Besides its use as safe coloring agents in the cosmetic and food industry, bacterial pigments also possess biological properties such as antimicrobial, antiviral, antioxidant and anticancer activities. This review article highlights the various types of bacterial pigments, the latest studies on the discovery of bacterial pigments and the therapeutic insights of these bacterial pigments which hopefully provides useful information, guidance and improvement in future study.
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Affiliation(s)
- Adzzie-Shazleen Azman
- Tropical Infectious Diseases Research and Education Centre, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Christina-Injan Mawang
- School of Science, Monash University Malaysia, Jalan Lagoon Selatan, 47500 Bandar Sunway, Selangor, Malaysia
| | - Sazaly Abubakar
- Tropical Infectious Diseases Research and Education Centre, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia
- Department of Medical Microbiology, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia
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30
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Finger S, Godoy FA, Wittwer G, Aranda CP, Calderón R, Miranda CD. Purification and characterization of indochrome type blue pigment produced by Pseudarthrobacter sp. 34LCH1 isolated from Atacama desert. J Ind Microbiol Biotechnol 2018; 46:101-111. [PMID: 30377866 DOI: 10.1007/s10295-018-2088-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2018] [Accepted: 10/15/2018] [Indexed: 01/29/2023]
Abstract
The interest in and demand for natural dyes has increased significantly in recent years; however, very few natural blue dyes are commercially available, because blue colored compounds in nature are relatively rare. In this study, a blue pigment-producing bacteria from Lake Chungará (Atacama Desert, Chile) was isolated, and its blue pigment was purified and chemically characterized. The pigment-producing strain was identified as Pseudarthrobacter sp. by 16S rRNA gene sequencing. The pigment was separated from the filtered culture medium by column chromatography/solid-phase extraction using different resins (ionic exchange, C-18, size exclusion). The strain produced up to 2.5 g L-1 of blue pigment, which was very soluble in water, partially soluble in methanol and insoluble in other organic solvents. The pigment was analyzed and characterized by analytical HPLC, UV-Vis, FT-IR, and H-NMR, and purified by semi-preparative HPLC. The pigment was non-toxic to brine shrimp (LD50 > 2.3 g L-1) and was stable at pH 6-10 at temperatures below 60 °C. HPLC analysis shows that the pigment is composed of four major blue fractions. The physicochemical properties and structural analysis demonstrate that this pigment belongs to the indochrome isomers, whose properties have yet to have been characterized. The high solubility in water, good stability in neutral and basic pH, and negligible toxicity of the blue pigment make it a good candidate suitable for several industrial and possibly some food applications.
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Affiliation(s)
- Sebastian Finger
- Facultad de Medicina y Ciencia, Universidad San Sebastián, Lago Panguipulli 1390, 5501842, Puerto Montt, Chile
| | - Félix A Godoy
- Centro i-mar, Universidad de Los Lagos, Camino a Chinquihue s/n km 6, Puerto Montt, Chile.
| | - Geraldine Wittwer
- Centro i-mar, Universidad de Los Lagos, Camino a Chinquihue s/n km 6, Puerto Montt, Chile
| | - Carlos P Aranda
- Departamento de Ciencias Biológicas y Biodiversidad, Universidad de Los Lagos, Av. Fuchslocher 1305, Osorno, Chile
| | - Raúl Calderón
- Centro de Investigación en Recursos Naturales y Sustentabilidad, Universidad Bernardo O'Higgins, Fábrica 1990, Santiago, Chile.,Instituto de Investigaciones Agropecuarias, INIA La Platina, Santa Rosa 11610, Santiago, Chile
| | - Claudio D Miranda
- Laboratorio de Patobiología Acuática, Departamento de Acuicultura, Universidad Católica del Norte, Larrondo 1281, Coquimbo, Chile
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Mumtaz R, Bashir S, Numan M, Shinwari ZK, Ali M. Pigments from Soil Bacteria and Their Therapeutic Properties: A Mini Review. Curr Microbiol 2018; 76:783-790. [PMID: 30178099 DOI: 10.1007/s00284-018-1557-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Accepted: 08/22/2018] [Indexed: 12/17/2022]
Abstract
Advancement in research on dyes obtained from natural sources e.g., plants, animals, insects and micro-organisms is widening the application of natural dyes in various fields. The natural dyes substituted their synthetic analogs at the beginning of twentieth century due to their improved quality, value, ease of production, ease of dyeing and some other factors. This era of dominance ended soon when toxic effects of synthetic dyes were reported. In the last few decades, pigments from micro-organisms especially soil derived bacteria is replacing dyes from other natural sources because of the increasing demand for safe, non-toxic, and biodegradable natural product. Apart from application in agriculture practices, cosmetics, textile, food and paper industries, bacterial pigments have additional biological activities e.g., anti-tumor, anti-fungal, anti-bacterial, immunosuppressive anti-viral, and many more which make them a potential candidate for pharmaceutical industry. Optimization of culture conditions and fermentation medium is the key strategies for large scale production of these natural dyes. An effort has been done to give an overview of pigments obtained from bacteria of soil origin, their dominance over dyes from other sources (natural and synthetic) and applications in the medical world in the underlying study.
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Affiliation(s)
- Roqayya Mumtaz
- Department of Biotechnology, Quaid-i-Azam University, Islamabad, Pakistan.
- Department of Biotechnology, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, 45320, Pakistan.
| | - Samina Bashir
- Department of Biotechnology, Quaid-i-Azam University, Islamabad, Pakistan.
- Department of Biotechnology, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, 45320, Pakistan.
| | - Muhammad Numan
- Department of Biotechnology, Quaid-i-Azam University, Islamabad, Pakistan
| | | | - Muhammad Ali
- Department of Biotechnology, Quaid-i-Azam University, Islamabad, Pakistan
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Kanelli M, Mandic M, Kalakona M, Vasilakos S, Kekos D, Nikodinovic-Runic J, Topakas E. Microbial Production of Violacein and Process Optimization for Dyeing Polyamide Fabrics With Acquired Antimicrobial Properties. Front Microbiol 2018; 9:1495. [PMID: 30042746 PMCID: PMC6048185 DOI: 10.3389/fmicb.2018.01495] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Accepted: 06/18/2018] [Indexed: 12/02/2022] Open
Abstract
In the present study, crude bacterial extract containing violacein is investigated for the preparation of antimicrobial polyamide fabrics. The optimal culture conditions of Janthinobacterium lividum (JL) for maximum biomass and violacein production were found to be 25°C, pH 7.0, while the addition of ampicillin of 0.2 mg mL-1 in the small scale increased violacein production 1.3-fold. In scale-up trials, the addition of 1% (v/v) glycerol in a fed-batch bioreactor, resulted in fivefold extracted crude violacein increase with final concentration of 1.828 g L-1. Polyamide 6.6 fabrics were dyed following three different processes; through simultaneous fermentation and dyeing (SFD), by incubating the fabric in the sonicated bacterial culture after fermentation and by using cell-free extract containing violacein. Maximum color change (ΔE) and color strength (K/S) obtained for SFD fabrics were 74.81 and 22.01, respectively, while no alteration of fastness and staining of dye at acid and alkaline perspiration or at water was indicated. The dyed fabrics presented significant antifungal activity against Candida albicans, C. parapsilosis, and C. krusei, as well as antibacterial properties against Escherichia coli, Staphylococcus aureus, and the S. aureus MRSA. We have shown that J. lividum cultures can be successfully used for violacein production and for simultaneous dying of fabrics resulting in dyed fabrics with antimicrobial properties without utilization of organic solvents.
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Affiliation(s)
- Maria Kanelli
- IndBioCat Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Mina Mandic
- Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia
| | - Margarita Kalakona
- IndBioCat Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Sozon Vasilakos
- Materials Industrial Research and Technology Center S.A., Athens, Greece
| | - Dimitris Kekos
- IndBioCat Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | | | - Evangelos Topakas
- IndBioCat Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece.,Biochemical and Chemical Process Engineering, Division of Sustainable Process Engineering, Department of Civil, Environmental and Natural Resources Engineering, Luleå University of Technology, Luleå, Sweden
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Bilsland E, Tavella TA, Krogh R, Stokes JE, Roberts A, Ajioka J, Spring DR, Andricopulo AD, Costa FTM, Oliver SG. Antiplasmodial and trypanocidal activity of violacein and deoxyviolacein produced from synthetic operons. BMC Biotechnol 2018; 18:22. [PMID: 29642881 PMCID: PMC5896143 DOI: 10.1186/s12896-018-0428-z] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2017] [Accepted: 03/15/2018] [Indexed: 02/02/2023] Open
Abstract
BACKGROUND Violacein is a deep violet compound that is produced by a number of bacterial species. It is synthesized from tryptophan by a pathway that involves the sequential action of 5 different enzymes (encoded by genes vioA to vioE). Violacein has antibacterial, antiparasitic, and antiviral activities, and also has the potential of inducing apoptosis in certain cancer cells. RESULTS Here, we describe the construction of a series of plasmids harboring the complete or partial violacein biosynthesis operon and their use to enable production of violacein and deoxyviolacein in E.coli. We performed in vitro assays to determine the biological activity of these compounds against Plasmodium, Trypanosoma, and mammalian cells. We found that, while deoxyviolacein has a lower activity against parasites than violacein, its toxicity to mammalian cells is insignificant compared to that of violacein. CONCLUSIONS We constructed E. coli strains capable of producing biologically active violacein and related compounds, and propose that deoxyviolacein might be a useful starting compound for the development of antiparasite drugs.
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Affiliation(s)
- Elizabeth Bilsland
- 0000000121885934grid.5335.0Cambridge Systems Biology Centre and Department of Biochemistry, University of Cambridge, Cambridge, UK ,0000 0001 0723 2494grid.411087.bDepartment of Structural and Functional Biology, Institute of Biology, UNICAMP, Campinas, SP Brazil ,0000 0001 0723 2494grid.411087.bLaboratory of Tropical Diseases – Prof. Dr. Luiz Jacintho da Silva - Department of Genetics, Evolution, Microbiology and Immunology, University of Campinas, Campinas, SP Brazil
| | - Tatyana A. Tavella
- 0000 0001 0723 2494grid.411087.bLaboratory of Tropical Diseases – Prof. Dr. Luiz Jacintho da Silva - Department of Genetics, Evolution, Microbiology and Immunology, University of Campinas, Campinas, SP Brazil
| | - Renata Krogh
- 0000 0004 1937 0722grid.11899.38Laboratory of Medicinal and Computational Chemistry, University of São Paulo, São Carlos, SP Brazil
| | - Jamie E. Stokes
- 0000000121885934grid.5335.0Department of Chemistry, University of Cambridge, Cambridge, UK
| | - Annabelle Roberts
- 0000000121885934grid.5335.0Cambridge Systems Biology Centre and Department of Biochemistry, University of Cambridge, Cambridge, UK
| | - James Ajioka
- 0000000121885934grid.5335.0Department of Pathology, University of Cambridge, Cambridge, UK
| | - David R. Spring
- 0000000121885934grid.5335.0Department of Chemistry, University of Cambridge, Cambridge, UK
| | - Adriano D. Andricopulo
- 0000 0004 1937 0722grid.11899.38Laboratory of Medicinal and Computational Chemistry, University of São Paulo, São Carlos, SP Brazil
| | - Fabio T. M. Costa
- 0000 0001 0723 2494grid.411087.bLaboratory of Tropical Diseases – Prof. Dr. Luiz Jacintho da Silva - Department of Genetics, Evolution, Microbiology and Immunology, University of Campinas, Campinas, SP Brazil
| | - Stephen G. Oliver
- 0000000121885934grid.5335.0Cambridge Systems Biology Centre and Department of Biochemistry, University of Cambridge, Cambridge, UK
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Parmar RS, Singh C. A comprehensive study of eco-friendly natural pigment and its applications. Biochem Biophys Rep 2017; 13:22-26. [PMID: 29234729 PMCID: PMC5723356 DOI: 10.1016/j.bbrep.2017.11.002] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2017] [Revised: 11/02/2017] [Accepted: 11/13/2017] [Indexed: 11/07/2022] Open
Abstract
Actinomycetes, a large group of filamentous bacteria account for 70–80% of secondary metabolites available commercially. The present investigation was undertaken with an aim to identify and characterize pigment from actinomycetes. Actinomycetes were isolated from rhizosphere soil samples collected from different regions of Madhya Pradesh state. Out of 85 actinomycetes, only 5 actinomycetes showed pigment production and based on diffusible pigment production ability one actinomycete ARITM02 was selected. The extraction of pigment was done by solvent extraction method using methanol and purified by TLC and column chromatography. The pigment was characterized by UV–Vis spectroscopy which showed the lamda maximum of 277.44. FTIR spectroscopy suggested various functional groups like amino group, amide group, hydroxide, benzene and lactone group. The Mass spectroscopy and NMR spectroscopy showed that the molecular mass of pigment is 621.7 and molecular formula is C34H43N3O8. The pigment was also tested for Antimicrobial activity against broad spectrum human pathogens, antioxidant test and toxicity test for safe use as a natural colorant in cosmetic, food, pharmaceutical and textile industries. The conclusion of study suggested that this novel pigment could be a versatile natural, safe and multipurpose. This study clearly describes about the characterization of pigment extracted from actinomycete ARITM02 which was isolated from rhizosphere soil. The selected isolate showed antimicrobial activity against bacteria, fungi and molds but no activity against dermatophytes. The study confirmed the basic biochemical nature of pigment which is similar to previous reported pigments. The pigment was characterized by UV–Vis spectroscopy, FTIR spectroscopy, Mass spectroscopy and NMR spectroscopy. The natural pigment is tested for Antimicrobial, antioxidant, anticancer and Allergy tests.
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Manivasagan P, Bharathiraja S, Santha Moorthy M, Mondal S, Seo H, Dae Lee K, Oh J. Marine natural pigments as potential sources for therapeutic applications. Crit Rev Biotechnol 2017; 38:745-761. [PMID: 29124966 DOI: 10.1080/07388551.2017.1398713] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
In recent years, marine natural pigments have emerged as a powerful alternative in the various fields of food, cosmetic, and pharmaceutical industries because of their excellent biocompatibility, bioavailability, safety, and stability. Marine organisms are recognized as a rich source of natural pigments such as chlorophylls, carotenoids, and phycobiliproteins. Numerous studies have shown that marine natural pigments have considerable medicinal potential and promising applications in human health. In this review, we summarize the marine natural pigments as potential sources for therapeutic applications, including: antioxidant, anticancer, antiangiogenic, anti-obesity, anti-inflammatory activities, drug delivery, photothermal therapy (PTT), photodynamic therapy (PDT), photoacoustic imaging (PAI), and wound healing. Marine natural pigments will offer a better platform for future theranostic applications.
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Affiliation(s)
- Panchanathan Manivasagan
- a Marine-Integrated Bionics Research Center , Pukyong National University , Busan , Republic of Korea
| | - Subramaniyan Bharathiraja
- a Marine-Integrated Bionics Research Center , Pukyong National University , Busan , Republic of Korea
| | - Madhappan Santha Moorthy
- a Marine-Integrated Bionics Research Center , Pukyong National University , Busan , Republic of Korea
| | - Sudip Mondal
- a Marine-Integrated Bionics Research Center , Pukyong National University , Busan , Republic of Korea
| | - Hansu Seo
- b Department of Biomedical Engineering and Center for Marine-Integrated Biotechnology (BK21 Plus) , Pukyong National University , Busan , Republic of Korea
| | - Kang Dae Lee
- c Department of Otolaryngology Head and Neck Surgery , Kosin University Gospel Hospital, Kosin University College of Medicine , Busan , Republic of Korea
| | - Junghwan Oh
- a Marine-Integrated Bionics Research Center , Pukyong National University , Busan , Republic of Korea.,b Department of Biomedical Engineering and Center for Marine-Integrated Biotechnology (BK21 Plus) , Pukyong National University , Busan , Republic of Korea
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36
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Narsing Rao MP, Xiao M, Li WJ. Fungal and Bacterial Pigments: Secondary Metabolites with Wide Applications. Front Microbiol 2017; 8:1113. [PMID: 28690593 PMCID: PMC5479939 DOI: 10.3389/fmicb.2017.01113] [Citation(s) in RCA: 173] [Impact Index Per Article: 24.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2016] [Accepted: 05/31/2017] [Indexed: 12/21/2022] Open
Abstract
The demand for natural colors is increasing day by day due to harmful effects of some synthetic dyes. Bacterial and fungal pigments provide a readily available alternative source of naturally derived pigments. In contrast to other natural pigments, they have enormous advantages including rapid growth, easy processing, and independence of weather conditions. Apart from colorant, bacterial and fungal pigments possess many biological properties such as antioxidant, antimicrobial and anticancer activity. This review outlines different types of pigments. It lists some bacterial and fungal pigments and current bacterial and fungal pigment status and challenges. It also focuses on possible fungal and bacterial pigment applications.
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Affiliation(s)
- Manik Prabhu Narsing Rao
- State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen UniversityGuangzhou, China
| | - Min Xiao
- State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen UniversityGuangzhou, China
| | - Wen-Jun Li
- State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen UniversityGuangzhou, China.,Key Laboratory of Biogeography and Bioresource in Arid Land, Xinjiang Institute of Ecology and Geography, Chinese Academy of SciencesÛrúmqi, China
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Ismail I, Gurusamy TP, Ramachandran H, Al-Ashraf Amirul A. Enhanced production of poly(3-hydroxybutyrate-co-4-hydroxybutyrate) copolymer and antimicrobial yellow pigmentation from Cupriavidus sp. USMAHM13 with antibiofilm capability. Prep Biochem Biotechnol 2017; 47:388-396. [DOI: 10.1080/10826068.2016.1252925] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Iszatty Ismail
- School of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia
| | | | - Hema Ramachandran
- School of Biological Sciences, Quest International University Perak, Perak, Malaysia
| | - Abdullah Al-Ashraf Amirul
- School of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia
- Malaysian Institute of Pharmaceuticals and Nutraceuticals, NIBM, Penang, Malaysia
- Centre for Chemical Biology, Universiti Sains Malaysia, Penang, Malaysia
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Rondón J, Gómez W, Ball MM, Melfo A, Rengifo M, Balcázar W, Dávila-Vera D, Balza-Quintero A, Mendoza-Briceño RV, Yarzábal LA. Diversity of culturable bacteria recovered from Pico Bolívar's glacial and subglacial environments, at 4950 m, in Venezuelan tropical Andes. Can J Microbiol 2016; 62:904-917. [PMID: 27564086 DOI: 10.1139/cjm-2016-0172] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Even though tropical glaciers are retreating rapidly and many will disappear in the next few years, their microbial diversity remains to be studied in depth. In this paper we report on the biodiversity of the culturable fraction of bacteria colonizing Pico Bolívar's glacier ice and subglacial meltwaters, at ∼4950 m in the Venezuelan Andean Mountains. Microbial cells of diverse morphologies and exhibiting uncompromised membranes were present at densities ranging from 1.5 × 104 to 4.7 × 104 cells/mL in glacier ice and from 4.1 × 105 to 9.6 × 105 cells/mL in subglacial meltwater. Of 89 pure isolates recovered from the samples, the majority were eurypsychrophilic or stenopsychrophilic, according to their temperature range of growth. Following analysis of their 16S rDNA nucleotidic sequence, 54 pure isolates were assigned to 23 phylotypes distributed within 4 different phyla or classes: Beta- and Gammaproteobacteria, Actinobacteria, and Bacteroidetes. Actinobacteria dominated the culturable fraction of glacier ice samples, whereas Proteobacteria were dominant in subglacial meltwater samples. Chloramphenicol and ampicillin resistance was exhibited by 73.07% and 65.38%, respectively, of the subglacial isolates, and nearly 35% of them were multiresistant. Considering the fast rate at which tropical glaciers are melting, this study confirms the urgent need to study the microbial communities immured in such environments.
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Affiliation(s)
- Johnma Rondón
- a Laboratorio de Microbiología Molecular y Biotecnología, Facultad de Ciencias, Núcleo de La Hechicera, Universidad de Los Andes, Av. Alberto Carnevalli, Mérida 5101, Estado Mérida, Venezuela
| | - Wileidy Gómez
- a Laboratorio de Microbiología Molecular y Biotecnología, Facultad de Ciencias, Núcleo de La Hechicera, Universidad de Los Andes, Av. Alberto Carnevalli, Mérida 5101, Estado Mérida, Venezuela
| | - María M Ball
- a Laboratorio de Microbiología Molecular y Biotecnología, Facultad de Ciencias, Núcleo de La Hechicera, Universidad de Los Andes, Av. Alberto Carnevalli, Mérida 5101, Estado Mérida, Venezuela
| | - Alejandra Melfo
- b Centro de Física Fundamental, Facultad de Ciencias, Núcleo de La Hechicera, Universidad de Los Andes, Av. Alberto Carnevalli, Mérida 5101, Estado Mérida, Venezuela
| | - Marcos Rengifo
- a Laboratorio de Microbiología Molecular y Biotecnología, Facultad de Ciencias, Núcleo de La Hechicera, Universidad de Los Andes, Av. Alberto Carnevalli, Mérida 5101, Estado Mérida, Venezuela
| | - Wilvis Balcázar
- a Laboratorio de Microbiología Molecular y Biotecnología, Facultad de Ciencias, Núcleo de La Hechicera, Universidad de Los Andes, Av. Alberto Carnevalli, Mérida 5101, Estado Mérida, Venezuela
| | - Delsy Dávila-Vera
- c Centro de Microscopía Electrónica Dr. Ernesto Palacios Prü, Vicerrectorado Académico, Universidad de Los Andes, Av. Tulio Febres Cordero, Mérida 5101, Estado Mérida, Venezuela
| | - Alirio Balza-Quintero
- c Centro de Microscopía Electrónica Dr. Ernesto Palacios Prü, Vicerrectorado Académico, Universidad de Los Andes, Av. Tulio Febres Cordero, Mérida 5101, Estado Mérida, Venezuela
| | - Rosa Virginia Mendoza-Briceño
- c Centro de Microscopía Electrónica Dr. Ernesto Palacios Prü, Vicerrectorado Académico, Universidad de Los Andes, Av. Tulio Febres Cordero, Mérida 5101, Estado Mérida, Venezuela
| | - Luis Andrés Yarzábal
- a Laboratorio de Microbiología Molecular y Biotecnología, Facultad de Ciencias, Núcleo de La Hechicera, Universidad de Los Andes, Av. Alberto Carnevalli, Mérida 5101, Estado Mérida, Venezuela.,d Laboratorio de Biología Molecular, Carrera de Ingeniería Agronómica, Facultad de Ciencias Agropecuarias, Universidad de Cuenca, Av. 12 de Octubre, Cuenca, Ecuador
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Ballestriero F, Nappi J, Zampi G, Bazzicalupo P, Di Schiavi E, Egan S. Caenorhabditis elegans employs innate and learned aversion in response to bacterial toxic metabolites tambjamine and violacein. Sci Rep 2016; 6:29284. [PMID: 27384057 PMCID: PMC4935850 DOI: 10.1038/srep29284] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2015] [Accepted: 06/14/2016] [Indexed: 12/19/2022] Open
Abstract
Bacteriovorus eukaryotes such as nematodes are one of the major natural predators of bacteria. In their defense bacteria have evolved a number of strategies to avoid predation, including the production of deterrent or toxic metabolites, however little is known regarding the response of predators towards such bacterial defenses. Here we use the nematode C. elegans as a model to study a predators’ behavioral response towards two toxic bacterial metabolites, tambjamine YP1 and violacein. We found that C. elegans displays an innate avoidance behavior towards tambjamine YP1, however requires previous exposure to violacein before learning to avoid this metabolite. The learned avoidance of violacein is specific, reversible, is mediated via the nematode olfactory apparatus (aversive olfactory learning) and is reduced in the absence of the neurotransmitter serotonin. These multiple strategies to evade bacterial toxic metabolites represent a valuable behavioral adaptation allowing bacteriovorus predators to distinguish between good and bad food sources, thus contributing to the understanding of microbial predator-prey interactions.
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Affiliation(s)
- Francesco Ballestriero
- School of Biological, Earth and Environmental Science and Centre for Marine Bio-Innovation, University of New South Wales, Australia
| | - Jadranka Nappi
- School of Biological, Earth and Environmental Science and Centre for Marine Bio-Innovation, University of New South Wales, Australia
| | - Giuseppina Zampi
- Institute of Biosciences and BioResources, National Research Council, Naples, Italy
| | - Paolo Bazzicalupo
- Institute of Biosciences and BioResources, National Research Council, Naples, Italy.,Institute of Genetics and Biophysics, National Research Council, Naples, Italy
| | - Elia Di Schiavi
- Institute of Biosciences and BioResources, National Research Council, Naples, Italy.,Institute of Genetics and Biophysics, National Research Council, Naples, Italy
| | - Suhelen Egan
- School of Biological, Earth and Environmental Science and Centre for Marine Bio-Innovation, University of New South Wales, Australia
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40
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Durán N, Justo GZ, Durán M, Brocchi M, Cordi L, Tasic L, Castro GR, Nakazato G. Advances in Chromobacterium violaceum and properties of violacein-Its main secondary metabolite: A review. Biotechnol Adv 2016; 34:1030-1045. [PMID: 27288924 DOI: 10.1016/j.biotechadv.2016.06.003] [Citation(s) in RCA: 87] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2015] [Revised: 06/02/2016] [Accepted: 06/07/2016] [Indexed: 12/22/2022]
Abstract
Chromobacterium violaceum is important in the production of violacein, like other bacteria, such as Alteromonas, Janthinobacterium, Pseudoalteromonas, Duganella, Collimonas and Escherichia. Violacein is a versatile pigment, where it exhibits several biological activities, and every year, it shows increasing commercially interesting uses, especially for industrial applications in cosmetics, medicines and fabrics. This review on violacein focuses mainly on the last five years of research regarding this target compound and describes production and importance of quorum sensing in C. violaceum, mechanistic aspects of its biosynthesis, monitoring processes, genetic perspectives, pathogenic effects, antiparasitic and antimicrobial activities, immunomodulatory potential and uses, antitumor potential and industrial applications.
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Affiliation(s)
- Nelson Durán
- Institute of Chemistry, Biological Chemistry Laboratory, University of Campinas, CP 6154, CEP 13083-970 Campinas, SP, Brazil; NanoBioss, Institute of Chemistry, University of Campinas, Campinas, SP, Brazil; LNNano (CNPEM) Campinas, SP, Brazil.
| | - Giselle Z Justo
- Department of Cell Biology and Department of Biochemistry, Federal University of São Paulo (UNIFESP-Diadema), SP, Brazil
| | - Marcela Durán
- NanoBioss, Institute of Chemistry, University of Campinas, Campinas, SP, Brazil; Institute of Biology, Urogenital, Carcinogenesis and Immunotherapy Laboratory, University of Campinas, SP, Brazil
| | - Marcelo Brocchi
- Institute of Biology, Department Genetics, Evolution and Bioagents, Universidade Estadual de Campinas, Campinas, SP, Brazil
| | - Livia Cordi
- NanoBioss, Institute of Chemistry, University of Campinas, Campinas, SP, Brazil; Institute of Biology, Department Genetics, Evolution and Bioagents, Universidade Estadual de Campinas, Campinas, SP, Brazil
| | - Ljubica Tasic
- Institute of Chemistry, Biological Chemistry Laboratory, University of Campinas, CP 6154, CEP 13083-970 Campinas, SP, Brazil; NanoBioss, Institute of Chemistry, University of Campinas, Campinas, SP, Brazil
| | - Guillermo R Castro
- Nanobiomaterials Laboratory, Applied Biotechnology Institute (CINDEFI, UNLP-CONICET CCT La Plata) - School of Sciences, Universidad Nacional de La Plata, La Plata, Argentina
| | - Gerson Nakazato
- Department of Microbiology, Biology Sciences Center, Londrina State University (UEL), Londrina, Brazil
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High-level production of violacein by the newly isolated Duganella violaceinigra str. NI28 and its impact on Staphylococcus aureus. Sci Rep 2015; 5:15598. [PMID: 26489441 PMCID: PMC4614999 DOI: 10.1038/srep15598] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2015] [Accepted: 09/23/2015] [Indexed: 11/24/2022] Open
Abstract
A violacein-producing bacterial strain was isolated and identified as a relative of Duganella violaceinigra YIM 31327 based upon phylogenetic analyses using the 16S rRNA, gyrB and vioA gene sequences and a fatty acid methyl ester (FAME) analysis. This new strain was designated D. violaceinigra str. NI28. Although these two strains appear related based upon these analyses, the new isolate was phenotypically different from the type strain as it grew 25% faster on nutrient media and produced 45-fold more violacein. When compared with several other violacein producing strains, including Janthinobacterium lividum, D. violaceinigra str. NI28 was the best violacein producer. For instance, the crude violacein yield with D. violaceinigra str. NI28 was 6.0 mg/OD at 24 hours, a value that was more than two-fold higher than all the other strains. Finally, the antibacterial activity of D. violaceinigra str. NI28 crude violacein was assayed using several multidrug resistant Staphylococcus aureus. Addition of 30 μM crude violacein led to a 96% loss in the initial S. aureus population while the minimum inhibitory concentration was 1.8 μM. Consequently, this novel isolate represents a phenotypic variant of D. violaceinigra capable of producing much greater quantities of crude violacein, an antibiotic effective against multidrug resistant S. aureus.
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Sasidharan A, Sasidharan NK, Amma DBNS, Vasu RK, Nataraja AV, Bhaskaran K. Antifungal activity of violacein purified from a novel strain of Chromobacterium sp. NIIST (MTCC 5522). J Microbiol 2015; 53:694-701. [PMID: 26428920 DOI: 10.1007/s12275-015-5173-6] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2015] [Revised: 06/08/2015] [Accepted: 06/22/2015] [Indexed: 11/25/2022]
Abstract
A novel strain of Chromobacterium sp. NIIST (MTCC 5522) producing high level of purple blue bioactive compound violacein was isolated from clay mine acidic sediment. During 24 h aerobic incubation in modified Luria Bertani medium, around 0.6 g crude violacein was produced per gram of dry weight biomass. An inexpensive method for preparing crystalline, pure violacein from crude pigment was developed (12.8 mg violacein/L) and the pure compound was characterized by different spectrometric methods. The violacein prepared was found effective against a number of plant and human pathogenic fungi and yeast species such as Cryptococcus gastricus, Trichophyton rubrum, Fusarium oxysporum, Rhizoctonia solani, Aspergillus flavus, Penicillium expansum, and Candida albicans. The best activity was recorded against Trichophyton rubrum (2 -g/ml), a human pathogen responsible for causing athlete-s foot infection. This is the first report of antifungal activity of purified violacein against pathogenic fungi and yeast.
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Affiliation(s)
- Anju Sasidharan
- Environmental Technology, Thiruvananthapuram, 695 019, India
| | | | | | - Radhakrishnan Kokkuvayil Vasu
- Chemical Sciences Division, CSIR-National Institute for Interdisciplinary Science and Technology (CSIR-NIIST), Thiruvananthapuram, 695 019, India
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Mireille Ayé A, Bonnin-Jusserand M, Brian-Jaisson F, Ortalo-Magné A, Culioli G, Koffi Nevry R, Rabah N, Blache Y, Molmeret M. Modulation of violacein production and phenotypes associated with biofilm by exogenous quorum sensing N-acylhomoserine lactones in the marine bacterium Pseudoalteromonas ulvae TC14. Microbiology (Reading) 2015; 161:2039-2051. [DOI: 10.1099/mic.0.000147] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Affiliation(s)
| | - Maryse Bonnin-Jusserand
- Université de Toulon, MAPIEM, EA 4323, 83957 La Garde, France
- Unité Biochimie des Produits Aquatiques (BPA), Université du Littoral Côte d'Opale, Institut Charles Viollette, EA 7394, 62327 Boulogne sur Mer, France
| | | | | | - Gérald Culioli
- Université de Toulon, MAPIEM, EA 4323, 83957 La Garde, France
| | - Rose Koffi Nevry
- Laboratoire de Microbiologie et Biotechnologie, Université Nangui-Abrogoua 02 BP 801, Abidjan 02, Côte d'Ivoire
| | - Nadia Rabah
- Université de Toulon, MAPIEM, EA 4323, 83957 La Garde, France
| | - Yves Blache
- Université de Toulon, MAPIEM, EA 4323, 83957 La Garde, France
| | - Maëlle Molmeret
- Université de Toulon, MAPIEM, EA 4323, 83957 La Garde, France
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Violacein: Properties and Production of a Versatile Bacterial Pigment. BIOMED RESEARCH INTERNATIONAL 2015; 2015:465056. [PMID: 26339614 PMCID: PMC4538413 DOI: 10.1155/2015/465056] [Citation(s) in RCA: 87] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/19/2014] [Accepted: 12/18/2014] [Indexed: 01/01/2023]
Abstract
Violacein-producing bacteria, with their striking purple hues, have undoubtedly piqued the curiosity of scientists since their first discovery. The bisindole violacein is formed by the condensation of two tryptophan molecules through the action of five proteins. The genes required for its production, vioABCDE, and the regulatory mechanisms employed have been studied within a small number of violacein-producing strains. As a compound, violacein is known to have diverse biological activities, including being an anticancer agent and being an antibiotic against Staphylococcus aureus and other Gram-positive pathogens. Identifying the biological roles of this pigmented molecule is of particular interest, and understanding violacein's function and mechanism of action has relevance to those unmasking any of its commercial or therapeutic benefits. Unfortunately, the production of violacein and its related derivatives is not easy and so various groups are also seeking to improve the fermentative yields of violacein through genetic engineering and synthetic biology. This review discusses the recent trends in the research and production of violacein by both natural and genetically modified bacterial strains.
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Fang MY, Zhang C, Yang S, Cui JY, Jiang PX, Lou K, Wachi M, Xing XH. High crude violacein production from glucose by Escherichia coli engineered with interactive control of tryptophan pathway and violacein biosynthetic pathway. Microb Cell Fact 2015; 14:8. [PMID: 25592762 PMCID: PMC4306242 DOI: 10.1186/s12934-015-0192-x] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2014] [Accepted: 01/06/2015] [Indexed: 12/18/2022] Open
Abstract
Background As bacteria-originated crude violacein, a natural indolocarbazole product, consists of violacein and deoxyviolacein, and can potentially be a new type of natural antibiotics, the reconstruction of an effective metabolic pathway for crude violacein (violacein and deoxyviolacein mixture) synthesis directly from glucose in Escherichia coli was of importance for developing industrial production process. Results Strains with a multivariate module for varied tryptophan productivities were firstly generated by combinatorial knockout of trpR/tnaA/pheA genes and overexpression of two key genes trpEfbr/trpD from the upstream tryptophan metabolic pathway. Then, the gene cluster of violacein biosynthetic pathway was introduced downstream of the generated tryptophan pathway. After combination of these two pathways, maximum crude violacein production directly from glucose by E. coli B2/pED + pVio was realized with a titer of 0.6 ± 0.01 g L−1 in flask culture, which was four fold higher than that of the control without the tryptophan pathway up-regulation. In a 5-L bioreactor batch fermentation with glucose as the carbon source, the recombinant E. coli B2/pED + pVio exhibited a crude violacein titer of 1.75 g L−1 and a productivity of 36 mg L−1 h−1, which was the highest titer and productivity reported so far under the similar culture conditions without tryptophan addition. Conclusion Metabolic pathway analysis using 13C labeling illustrated that the up-regulated tryptophan supply enhanced tryptophan metabolism from glucose, whereas the introduction of violacein pathway drew more carbon flux from glucose to tryptophan, thereby contributing to the effective production of crude violacein in the engineered E. coli cell factory. Electronic supplementary material The online version of this article (doi:10.1186/s12934-015-0192-x) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Ming-Yue Fang
- Department of Chemical Engineering, Tsinghua University, Beijing, 10084, China.
| | - Chong Zhang
- Department of Chemical Engineering, Tsinghua University, Beijing, 10084, China.
| | - Song Yang
- School of Life Sciences, Qingdao Agriculture University, Qingdao, 266109, China.
| | - Jin-Yu Cui
- School of Life Sciences, Qingdao Agriculture University, Qingdao, 266109, China.
| | - Pei-Xia Jiang
- Institute of Microbiology, Chinese Academy of Science, Beijing, 10084, China.
| | - Kai Lou
- Institute of Microbiology, Xinjiang Academy of Agricultural Science, Urumqi, 830000, China.
| | - Masaaki Wachi
- Department of Bioengineering, Tokyo Institute of Technology, Yokohama, 226-8503, Japan.
| | - Xin-Hui Xing
- Department of Chemical Engineering, Tsinghua University, Beijing, 10084, China.
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Ballestriero F, Daim M, Penesyan A, Nappi J, Schleheck D, Bazzicalupo P, Di Schiavi E, Egan S. Antinematode activity of Violacein and the role of the insulin/IGF-1 pathway in controlling violacein sensitivity in Caenorhabditis elegans. PLoS One 2014; 9:e109201. [PMID: 25295516 PMCID: PMC4189955 DOI: 10.1371/journal.pone.0109201] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2014] [Accepted: 09/10/2014] [Indexed: 01/23/2023] Open
Abstract
The purple pigment violacein is well known for its numerous biological activities including antibacterial, antiviral, antiprotozoan, and antitumor effects. In the current study we identify violacein as the antinematode agent produced by the marine bacterium Microbulbifer sp. D250, thereby extending the target range of this small molecule. Heterologous expression of the violacein biosynthetic pathway in E. coli and experiments using pure violacein demonstrated that this secondary metabolite facilitates bacterial accumulation in the nematode intestine, which is accompanied by tissue damage and apoptosis. Nematodes such as Caenorhabditis elegans utilise a well-defined innate immune system to defend against pathogens. Using C. elegans as a model we demonstrate the DAF-2/DAF-16 insulin/IGF-1 signalling (IIS) component of the innate immune pathway modulates sensitivity to violacein-mediated killing. Further analysis shows that resistance to violacein can occur due to a loss of DAF-2 function and/or an increased function of DAF-16 controlled genes involved in antimicrobial production (spp-1) and detoxification (sod-3). These data suggest that violacein is a novel candidate antinematode agent and that the IIS pathway is also involved in the defence against metabolites from non-pathogenic bacteria.
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Affiliation(s)
- Francesco Ballestriero
- School of Biotechnology and Biomolecular Sciences and Centre for Marine Bio-Innovation, University of New South Wales, Sydney, New South Wales, Australia
| | - Malak Daim
- School of Biotechnology and Biomolecular Sciences and Centre for Marine Bio-Innovation, University of New South Wales, Sydney, New South Wales, Australia
| | - Anahit Penesyan
- Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, New South Wales, Australia
| | - Jadranka Nappi
- School of Biotechnology and Biomolecular Sciences and Centre for Marine Bio-Innovation, University of New South Wales, Sydney, New South Wales, Australia
| | - David Schleheck
- Biology Department, University of Konstanz, Konstanz, Germany
| | - Paolo Bazzicalupo
- Institute of Genetics and Biophysics "Adriano Buzzati Traverso", National Research Council, Naples, Italy
| | - Elia Di Schiavi
- Institute of Genetics and Biophysics "Adriano Buzzati Traverso", National Research Council, Naples, Italy
| | - Suhelen Egan
- School of Biotechnology and Biomolecular Sciences and Centre for Marine Bio-Innovation, University of New South Wales, Sydney, New South Wales, Australia
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Gallardo MJ, Staforelli JP, Meza P, Bordeu I, Torres S. Characterization of Chromobacterium violaceum pigment through a hyperspectral imaging system. AMB Express 2014; 4:4. [PMID: 24417877 PMCID: PMC3924903 DOI: 10.1186/2191-0855-4-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2013] [Accepted: 12/30/2013] [Indexed: 11/25/2022] Open
Abstract
In this paper, a comprehensive spatio-spectral and temporal analysis for Chromobacterium violaceum colonies is reported. A hyperspectral imaging (HSI) system is used to recover the spectral signatures of pigment production in a non-homogeneous media with high spectral resolution and high sensitivity in vivo, without destructing the sample. This non-contact sensing technique opens avenues to study the temporal growing of a specific section in the bacterial colony. Further, from a 580 [nm] and 764 [nm] spatio-spectral time series, a wild-type and mutant Chromobacterium violaceum strains are characterized. Such study provides quantitative information about kinetic parameters of pigment production and bacterial growing.
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Biosynthesis and characterization of violacein, deoxyviolacein and oxyviolacein in heterologous host, and their antimicrobial activities. Biochem Eng J 2012. [DOI: 10.1016/j.bej.2012.06.005] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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49
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Ahmad WA, Yusof NZ, Nordin N, Zakaria ZA, Rezali MF. Production and characterization of violacein by locally isolated Chromobacterium violaceum grown in agricultural wastes. Appl Biochem Biotechnol 2012; 167:1220-34. [PMID: 22278051 DOI: 10.1007/s12010-012-9553-7] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2011] [Accepted: 01/06/2012] [Indexed: 11/27/2022]
Abstract
The present work highlighted the production of violacein by the locally isolated Chromobacterium violaceum (GenBank accession no. HM132057) in various agricultural waste materials (sugarcane bagasse, solid pineapple waste, molasses, brown sugar), as an alternative to the conventional rich medium. The highest yield for pigment production (0.82 g L⁻¹) was obtained using free cells when grown in 3 g of sugarcane bagasse supplemented with 10% (v/v) of L-tryptophan. A much lower yield (0.15 g L⁻¹) was obtained when the cells were grown either in rich medium (nutrient broth) or immobilized onto sugarcane bagasse. Violacein showed similar chemical properties as other natural pigments based on the UV-Vis, Fourier transform infrared spectroscopy, thin-layer chromatography, nuclear magnetic resonance, and mass spectrometry analysis. The pigment is highly soluble in acetone and methanol, insoluble in water or non-polar organic solvents, and showed good stability between pH 5-9, 25-100 °C, in the presence of light metal ions and oxidant such as H₂O₂. However, violacein would be slowly degraded upon exposure to light. This is the first report on the use of cheap and easily available agricultural wastes as growth medium for violacein-producing C. violaceum.
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Affiliation(s)
- Wan Azlina Ahmad
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia, Johor, Malaysia.
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Fed-batch fermentation of recombinant Citrobacter freundii with expression of a violacein-synthesizing gene cluster for efficient violacein production from glycerol. Biochem Eng J 2011. [DOI: 10.1016/j.bej.2011.08.008] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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