Bacteria of the sulphur cycle: An overview of microbiology, biokinetics and their role in petroleum and mining industries

Rhodobacteraceae are Prevalent and Ecologically Crucial Bacterial Members in Marine Biofloc Aquaculture

Bioflocs are microbial aggregates primarily composed of heterotrophic bacteria that play essential ecological roles in maintaining animal health, gut microbiota, and water quality in biofloc aquaculture systems. Despite the global adoption of biofloc aquaculture for shrimp and fish cultivation, our understanding of biofloc microbiota-particularly the dominant bacterial members and their ecological functions-remains limited. In this study, we employed integrated metataxonomic and metagenomic approaches to demonstrate that the family Rhodobacteraceae of Alphaproteobacteria consistently dominates the biofloc microbiota and plays essential ecological roles. We first analyzed a comprehensive metataxonomic dataset consisting of 200 16S rRNA gene amplicons collected across three Asian countries: South Korea, China, and Vietnam. Taxonomic investigation identified Rhodobacteraceae as the dominant and consistent bacterial members across the datasets. The predominance of this taxon was further validated through metagenomics approaches, including read taxonomy and read recruitment analyses. To explore the ecological roles of Rhodobacteraceae, we applied genome-centric metagenomics, reconstructing 45 metagenome-assembled genomes. Functional annotation of these genomes revealed that dominant Rhodobacteraceae genera, such as Marivita, Ruegeria, Dinoroseobacter, and Aliiroseovarius, are involved in vital ecological processes, including complex carbohydrate degradation, aerobic denitrification, assimilatory nitrate reduction, ammonium assimilation, and sulfur oxidation. Overall, our study reveals that the common practice of carbohydrate addition in biofloc aquaculture systems fosters the growth of specific heterotrophic bacterial communities, particularly Rhodobacteraceae. These bacteria contribute to maintaining water quality by removing toxic nitrogen and sulfur compounds and enhance animal health by colonizing gut microbiota and exerting probiotic effects.

Enterobacter sp. HIT-SHJ4 isolated from wetland with carbon, nitrogen and sulfur co-metabolism and its implication for bioremediation

Both autotrophic and heterotrophic denitrification are known as important bioprocesses of microbe-mediated nitrogen cycle in natural ecosystems. Actually, mixotrophic denitrification co-driven by organic matter and reduced sulfur substances are also common, especially in hypoxic environments such as estuarine sediments. However, carbon, nitrogen and sulfur co-metabolism during mixotrophic denitrification in natural water ecosystems has rarely been reported in detail. Therefore, this study investigated the co-metabolism of carbon, nitrogen and sulfur using samples collected from four distinct natural water ecosystems. Results demonstrated that samples from various sources all exhibited the ability for co-metabolism of carbon, nitrogen and sulfur. Microbial community analysis showed that Pseudomonas and Paracoccus were dominant bacteria ranging from 65.6% to 75.5% in mixotrophic environment. Enterobacter sp. HIT-SHJ4, a mixotrophic denitrifying strain which owned the capacity for co-metabolism of carbon, nitrogen and sulfur, was isolated and reported here for the first time. The strain preferred methanol as its carbon source and demonstrated remarkable efficiency for removing sulfide and nitrate with below 100 mg/L sulfide. Under weak acid conditions (pH 6.5-7.0), it exhibited enhanced capability in converting sulfide to elemental sulfur. Its bioactivity was evident within a temperature from 25 °C to 40 °C and C/N ratios from 0.75 to 3. This study confirmed the widespread presence of microbial-mediated synergistic carbon, nitrogen and sulfur metabolism in natural aquatic ecosystems. HIT-SHJ4 emerges as a novel strain, shedding light on carbon, nitrogen and sulfur co-metabolism in natural water bodies. Furthermore, it also serves as a promising candidate microorganism for in-situ ecological remediation, particularly in dealing with contamination posed by nitrate, sulfide, and organic matter.

Growth rate as a link between microbial diversity and soil biogeochemistry

Measuring the growth rate of a microorganism is a simple yet profound way to quantify its effect on the world. The absolute growth rate of a microbial population reflects rates of resource assimilation, biomass production and element transformation-some of the many ways in which organisms affect Earth's ecosystems and climate. Microbial fitness in the environment depends on the ability to reproduce quickly when conditions are favourable and adopt a survival physiology when conditions worsen, which cells coordinate by adjusting their relative growth rate. At the population level, relative growth rate is a sensitive metric of fitness, linking survival and reproduction to the ecology and evolution of populations. Techniques combining omics and stable isotope probing enable sensitive measurements of the growth rates of microbial assemblages and individual taxa in soil. Microbial ecologists can explore how the growth rates of taxa with known traits and evolutionary histories respond to changes in resource availability, environmental conditions and interactions with other organisms. We anticipate that quantitative and scalable data on the growth rates of soil microorganisms, coupled with measurements of biogeochemical fluxes, will allow scientists to test and refine ecological theory and advance process-based models of carbon flux, nutrient uptake and ecosystem productivity. Measurements of in situ microbial growth rates provide insights into the ecology of populations and can be used to quantitatively link microbial diversity to soil biogeochemistry.

Efficient nitrite accumulation in partial sulfide autotrophic denitrification (PSAD) system: insights of S/N ratio, pH and temperature

To provide the necessary nitrite for the Anaerobic Ammonium Oxidation (ANAMMOX) process, the effect of nitrite accumulation in the partial sulfide autotrophic denitrification (PSAD) process was investigated using an SBR reactor. The results revealed that the effectiveness of nitrate removal was unsatisfactory when the S/N ratio (mol/mol) fell below 0.6. The optimal conditions for nitrate removal and nitrite accumulation were achieved within the S/N ratio range of 0.7-0.8, resulting in an average Nitrate Removal Efficiency (NRE) of 95.84%±4.89% and a Nitrite Accumulation Rate (NAR) of 75.31%±6.61%, respectively. It was observed that the nitrate reduction rate was three times faster than that of nitrite reduction during a typical cycle test. Furthermore, batch tests were conducted to assess the influence of pH and temperature conditions. In the pH tests, it became evident that the PSAD process performed more effectively in alkaline environment. The highest levels of nitrate removal and nitrite accumulation were achieved at an initial pH of 8.5, resulting in a NRE of 98.30%±1.93% and a NAR of 85.83%±0.47%, respectively. In the temperature tests, the most favourable outcomes for nitrate removal and nitrite accumulation were observed at 22±1 ℃, with a NRE of 100.00% and a NAR of 81.03%±1.64%, respectively. Moreover, a comparative analysis of 16S rRNA sequencing results between the raw sludge and the sulfide-enriched culture sludge sample showed that Proteobacteria (49.51%) remained the dominant phylum, with Thiobacillus (24.72%), Prosthecobacter (2.55%), Brevundimonas (2.31%) and Ignavibacterium (2.04%) emerging as the dominant genera, assuming the good nitrogen performance of the system.

Genome-centric metagenomics provides insights into the core microbial community and functional profiles of biofloc aquaculture

Bioflocs are microbial aggregates that play a pivotal role in shaping animal health, gut microbiota, and water quality in biofloc technology (BFT)-based aquaculture systems. Despite the worldwide application of BFT in aquaculture industries, our comprehension of the community composition and functional potential of the floc-associated microbiota (FAB community; ≥3 µm size fractions) remains rudimentary. Here, we utilized genome-centric metagenomic approach to investigate the FAB community in shrimp aquaculture systems, resulting in the reconstruction of 520 metagenome-assembled genomes (MAGs) spanning both bacterial and archaeal domains. Taxonomic analysis identified Pseudomonadota and Bacteroidota as core community members, with approximately 93% of recovered MAGs unclassified at the species level, indicating a large uncharacterized phylogenetic diversity hidden in the FAB community. Functional annotation of these MAGs unveiled their complex carbohydrate-degrading potential and involvement in carbon, nitrogen, and sulfur metabolisms. Specifically, genomic evidence supported ammonium assimilation, autotrophic nitrification, denitrification, dissimilatory nitrate reduction to ammonia, thiosulfate oxidation, and sulfide oxidation pathways, suggesting the FAB community's versatility for both aerobic and anaerobic metabolisms. Conversely, genes associated with heterotrophic nitrification, anaerobic ammonium oxidation, assimilatory nitrate reduction, and sulfate reduction were undetected. Members of Rhodobacteraceae emerged as the most abundant and metabolically versatile taxa in this intriguing community. Our MAGs compendium is expected to expand the available genome collection from such underexplored aquaculture environments. By elucidating the microbial community structure and metabolic capabilities, this study provides valuable insights into the key biogeochemical processes occurring in biofloc aquacultures and the major microbial contributors driving these processes.

IMPORTANCE

Biofloc technology has emerged as a sustainable aquaculture approach, utilizing microbial aggregates (bioflocs) to improve water quality and animal health. However, the specific microbial taxa within this intriguing community responsible for these benefits are largely unknown. Compounding this challenge, many bacterial taxa resist laboratory cultivation, hindering taxonomic and genomic analyses. To address these gaps, we employed metagenomic binning approach to recover over 500 microbial genomes from floc-associated microbiota of biofloc aquaculture systems operating in South Korea and China. Through taxonomic and genomic analyses, we deciphered the functional gene content of diverse microbial taxa, shedding light on their potential roles in key biogeochemical processes like nitrogen and sulfur metabolisms. Notably, our findings underscore the taxa-specific contributions of microbes in aquaculture environments, particularly in complex carbon degradation and the removal of toxic substances like ammonia, nitrate, and sulfide.

Selective Detection of Divalent Cations (Cu2+, Zn2+, Pb2+) and Anions (SO42-, S2-, CO32-) Using a pH-Sensitive Multi-functional Schiff Base in Neutral Medium

A new Schiff base-based multi-cation/anion probe (L) has been synthesized and characterized using HR-MS, FT-IR, 1H, and 13C NMR techniques. The Schiff base motif provides specific binding sites that detect cations and anions by generating distinct optical output signals upon interaction. A noticeable color change of the probe solution was observed from pale yellow to various shades of yellow upon adding cations such as Cu2+, Zn2+, and Pb2+ and anions such as CO32⁻, S2⁻, and SO42⁻. This color change results from forming complexes like M3L2 with metal ions. Whereas origin of color in presence of anion were attributed due to the deprotonation of acidic proton in the ligand. Moreover, the complexes formed by Zn2+, S2/CO32⁻ ion with L are fluorescent, enabling the detection of Cu2+ and SO42⁻ using the Stern-Volmer plot, with a limit of detection (LODs) of 8.48 µM and 10.47 µM, respectively. Additionally, increasing the pH of the probe solution above 8 reveals a significant enhancement of fluorescence intensity due to the deprotonation of phenolic -OH and amide -NH in the presence of hydroxide ions. This emission in the basic medium is quenched by Cu2+ ions and restored when Cu2+ is complexed with EDTA. A logic gate has also been constructed for understanding the TURN-OFF-TURN-ON mechanism involving Cu2+ ions and EDTA. Overall, the versatile performance of a single probe L opens up new possibilities as a multifunctional sensor, making it highly suitable for practical applications.

Wastewater Treatment with Bacterial Representatives of the Thiothrix Morphotype

Bacteria of the Thiothrix morphotype, comprising the genera Thiothrix, Thiolinea and Thiofilum, are frequently encountered in domestic and industrial wastewater treatment systems, but they are usually not clearly differentiated due to the marked similarity in their morphologies. Methods ranging from light microscopy, FISH and PCR to modern high-throughput sequencing are used to identify them. The development of these bacteria in wastewater treatment systems has both advantages and disadvantages. On the one hand, the explosive growth of these bacteria can lead to activated sludge bulking or clogging of the treatment system's membranes, with a consequent decrease in the water treatment efficiency. On the other hand, members of the Thiothrix morphotype can improve the quality of granular sludge and increase the water treatment efficiency. This may be due to their capacity for sulfide oxidation, denitrification combined with the oxidation of reduced sulfur compounds, enhanced biological phosphate removal and possibly denitrifying phosphate removal. The recently obtained pangenome of the genus Thiothrix allows the explanation, at the genomic level, of the experimental results of various studies. Moreover, this review summarizes the data on the factors affecting the proliferation of representatives of the Thiothrix morphotype.

Screening the Performance of a Reverse Osmosis Pilot-Scale Process That Treats Blended Feedwater Containing a Nanofiltration Concentrate and Brackish Groundwater

A two-stage pilot plant study has been completed that evaluated the performance of a reverse osmosis (RO) membrane process for the treatment of feedwater that consisted of a blend of a nanofiltration (NF) concentrate and brackish groundwater. Membrane performance was assessed by monitoring the process operation, collecting water quality data, and documenting the blended feedwater's impact on fouling due to microbiological or organic means, plugging, and scaling, or their combination. Fluorescence and biological activity reaction tests were used to identify the types of organics and microorganisms present in the blended feedwater. Additionally, scanning electron microscopy (SEM) and energy dispersive X-ray spectroscopy (EDS) were used to analyze suspended matter that collected on the surfaces of cartridge filters used in the pilot's pretreatment system. SEM and EDS were also used to evaluate solids collected on the surfaces of 0.45 µm silver filter pads after filtering known volumes of NF concentrate and RO feedwater blends. Water quality analyses confirmed that the blended feedwater contained little to no dissolved oxygen, and a significant amount of particulate matter was absent from the blended feedwater as defined by silt density index and turbidity measurements. However, water quality results suggested that the presence of sulfate, sulfide, iron, anaerobic bacteria, and humic acid organics likely contributed to the formation of pyrite observed on some of the membrane surfaces autopsied at the conclusion of pilot operations. It was determined that first-stage membrane productivity was impacted by the location of cartridge filter pretreatment; however, second-stage productivity was maintained with no observed flux decline during the entire pilot operation's timeline. Study results indicated that the operation of an RO process treating a blend of an NF concentrate and brackish groundwater could maintain a sustainable and productive operation that provided a practical minimum liquid discharge process operation for the NF concentrate, while the dilution of RO feedwater salinity would lower overall production costs.

Comparative study of the removal of sulfate by UASB in light and dark environment

At present, the application of sewage treatment technologies is restricted by high sulfate concentrations. In the present work, the sulfate removal was biologically treated using an upflow anaerobic sludge blanket (UASB) in the absence/presence of light. First, the start-up of UASB for the sulfate removal was studied in terms of COD degradation, sulfate removal, and effluent pH. Second, the impacts of different operation parameters (i.e., COD/SO42- ratio, temperature and illumination time) on the UASB performance were explored. Third, the properties of sludge derived from the UASB at different time were analyzed. Results show that after 28 days of start-up, the COD removal efficiencies in both the photoreactor and non-photoreactor could reach a range of 85-90% while such reactors could achieve > 90% of sulfate being removed. Besides, higher illumination time could facilitate the removal of pollutants in the photoreactor. To sum up, the present study can provide technical support for the clean removal of sulfate from wastewater using photoreactors.

Elemental sulfur biorecovery from phosphogypsum using oxygen-membrane biofilm reactor: Bioreactor parameters optimization, metagenomic analysis and metabolic prediction of the biofilm activity

This work investigated elemental sulfur (S0) biorecovery from Phosphogypsum (PG) using sulfur-oxidizing bacteria in an O2-based membrane biofilm reactor (MBfR). The system was first optimized using synthetic sulfide medium (SSM) as influent, then switched to biogenic sulfide medium (BSM) generated by biological reduction of PG alkaline leachate. The results using SSM had high sulfide-oxidation efficiency (98 %), sulfide to S0 conversion (∼90 %), and S0 production rate up to 2.7 g S0/(m2.d), when the O2/S ratio was ∼0.5 g O2/g S. With the BSM influent, the system maintained high sulfide-to-S0 conversion rate (97 %), and S0-production rate of 1.6 g S0/(m2.d). Metagenomic analysis revealed that Thauera was the dominant genus in SSM and BSM biofilms. Furthermore, influent composition affected the bacterial community structure and abundances of functional microbial sulfur genes, modifying the sulfur-transformation pathways in the biofilms. Overall, this work shows promise for O2-MBfR usage in S0 biorecovery from PG-leachate and other sulfidogenic effluents.

Small Molecule Optical Probes for Detection of H2S in Water Samples: A Review

Hydrogen sulfide (H2S) is closely linked to not only environmental hazards, but also it affects human health due to its toxic nature and the exposure risks associated with several occupational settings. Therefore, detection of this pollutant in water sources has garnered immense importance in the analytical research arena. Several research groups have devoted great efforts to explore the selective as well as sensitive methods to detect H2S concentrations in water. Recent studies describe different strategies for sensing this ubiquitous gas in real-life water samples. Though many of the designed and developed H2S detection approaches based on the use of organic small molecules facilitate qualitative/quantitative detection of the toxic contaminant in water, optical detection has been acknowledged as one of the best, attributed to the simple, highly sensitive, selective, and good repeatability features of the technique. Therefore, this review is an attempt to offer a general perspective of easy-to-use and fast response optical detection techniques for H2S, fluorimetry and colorimetry, over a wide variety of other instrumental platforms. The review affords a concise summary of the various design strategies adopted by various researchers in constructing small organic molecules as H2S sensors and offers insight into their mechanistic pathways. Moreover, it collates the salient aspects of optical detection techniques and highlights the future scope for prospective exploration in this field based on the limitations of the existing H2S probes.

Biochemical engineering for elemental sulfur from flue gases through multi-enzymatic based approaches - A review

Flue gases are the gases which are produced from industries related to chemical manufacturing, petrol refineries, power plants and ore processing plants. Along with other pollutants, sulfur present in the flue gas is detrimental to the environment. Therefore, environmentalists are concerned about its removal and recovery of resources from flue gases due to its activation ability in the atmosphere to transform into toxic substances. This review is aimed at a critical assessment of the techniques developed for resource recovery from flue gases. The manuscript discusses various bioreactors used in resource recovery such as hollow fibre membrane reactor, rotating biological contractor, sequential batch reactor, fluidized bed reactor, entrapped cell bioreactor and hybrid reactors. In conclusion, this manuscript provides a comprehensive analysis of the potential of thermotolerant and thermophilic microbes in sulfur removal. Additionally, it evaluates the efficacy of a multi-enzyme engineered bioreactor in this process. Furthermore, the study introduces a groundbreaking sustainable model for elemental sulfur recovery, offering promising prospects for environmentally-friendly and economically viable sulfur removal techniques in various industrial applications.

Optimizing Autotrophic Sulfide Oxidation in the Oxygen-Based Membrane Biofilm Reactor to Recover Elemental Sulfur

Biological sulfide oxidation is an efficient means to recover elemental sulfur (S0) as a valuable resource from sulfide-bearing wastewater. This work evaluated the autotrophic sulfide oxidation to S0 in the O2-based membrane biofilm reactor (O2-MBfR). High recovery of S0 (80-90% of influent S) and high sulfide oxidation (∼100%) were simultaneously achieved when the ratio of O2-delivery capacity to sulfide-to S0 surface loading (SL) (O2/S2- → S0 ratio) was around 1.5 (g O2/m2-day/g O2/m2-day). On average, most of the produced S0 was recovered in the MBfR effluent, although the biofilm could be a source or sink for S0. Shallow metagenomic analysis of the biofilm showed that the top sulfide-oxidizing genera present in all stages were Thauera, Thiomonas, Thauera_A, and Pseudomonas. Thiomonas or Pseudomonas was the most important genus in stages that produced almost only S0 (i.e., the O2/S2- → S0 ratio around 1.5 g of the O2/m2-day/g O2/m2-day). With a lower sulfide SL, the S0-producing genes were sqr and fccAB in Thiomonas. With a higher sulfide SL, the S0-producing genes were in the soxABDXYZ system in Pseudomonas. Thus, the biofilm community of the O2-MBfR adapted to different sulfide-to-S0 SLs and corresponding O2-delivery capacities. The results illustrate the potential for S0 recovery using the O2-MBfR.

A biological strategy for sulfide control in sewers: Removing sulfide by sulfur-oxidizing bacteria

Sulfide produced from sewers is considered one of the dominant threats to public health and sewer lifespan due to its toxicity and corrosiveness. In this study, we developed an environmentally friendly strategy for gaseous sulfide control by enriching indigenous sulfur-oxidizing bacteria (SOB) from sewer sediment. Ceramics acted as bio-carriers for immobilizing SOB for practical use in a lab-scale sewer reactor. 16 S rRNA gene sequences revealed that the SOB consortium was successfully enriched, with Thiobacillus, Pseudomonas, and Alcaligenes occupying a dominant abundance of 64.7% in the microbial community. Metabolic pathway analysis in different acclimatization stages indicates that microorganisms could convert thiosulfate and sulfide into elemental sulfur after enrichment and immobilization. A continuous experiment in lab-scale sewer reactors confirmed an efficient result for sulfide removal with hydrogen sulfide reduction of 43.9% and 85.1% under high-sulfur load and low-sulfur load conditions, respectively. This study shed light on the promising application for sewer sulfide control by biological sulfur oxidation strategy.

Effect of alkaline leaching of phosphogypsum on sulfate reduction activity and bacterial community composition using different sources of anaerobic microbial inoculum

Phosphogypsum (PG), a by-product of the phosphate industry, is high in sulfate, (SO42-), which makes it an excellent substrate for sulfate-reducing bacteria (SRB) to produce hydrogen sulfide. This work aimed to optimize SO42- leaching from PG to achieve a high biological reduction of SO42- and generate high sulfide concentrations for subsequent use in the biological recovery of elemental sulfur. Five SRB consortia were isolated and enriched from: IS (Industrial sludges), MS (Marine sediments), WC (Winogradsky column), SNV (petroleum industry sediments) and PG (stored Phosphogypsum). The five consortia showed reduction activity when using PG leachate (with water) as source of SO42- and lactate, acetate, or glucose as the electron donor. The highest reduction rate (81.5 %) was registered using lactate and the IS consortium (81.5 %) followed by MS (79 %) and PG (71 %). To enhance the concentration of leached SO42- from PG for future utilization with the isolated consortia, PG was treated with NaOH solutions (2 % and 5 %). SO42- release of 97 % was achieved with a 5 % concentration and the resulting leachate was further diluted to target a SO42- concentration of 12.4 g·L-1 for utilization with the isolated consortia. Compared to water leachate, a significantly higher reduction rate was registered (2 g·L-1 of SO42) using the IS consortium, demonstrating limited inhibition effect of sulfide- concentration on SRB functionalities. Moreover, metagenomic analysis of the consortia revealed that using PG as a source of SO42- increased the abundance of Deltaproteobacteria, including known SRB like Desulfovibrio, Desulfomicrobium, and Desulfosporosinus, as well as novel SRB genera (Cupidesulfovibrio, Desulfocurvus, Desulfococcus) that showed, for the first time, significant potential as novel sulfate-reducers using PG as a SO42- source.

Characteristics of dissolved organic matter in point-source wastewaters at a petrochemical plant: Molecular constituents and contributions to the influent of wastewater treatment plant

Dissolved organic matter (DOM) in point-source petrochemical wastewaters (PCWs) from different operating units is closely linked to the efficiency of wastewater treatment plant (WWTP). However, systematic studies on DOM characters of point-source PCWs and their influences on WWTP influents were seldom conducted. In this study, DOM in three low-salinity point-source PCWs and four high-salinity point-source PCWs at a typical petrochemical plant were comprehensively characterized at a molecular level. Orbitrap mass spectrometry results indicated that point-source PCWs had diverse DOM constituents tightly related to the corresponding petrochemical processes. Phenols in oily wastewaters (OW), phenols and N-containing compounds in coal partial oxidation wastewater (POXW), and naphthenic acids (NAs) and aromatic acids in crude oil electric desalting unit wastewater (EDW) were characteristic DOM constituents for low-salinity point-source PCWs. While S-containing compounds (mercaptans, thiophenes) and NAs in spent caustic liquors (SCL), alcohols and esters in butanol-octanol plant wastewater (BOW), high molecular weight aromatic ketones in phenol-acetone plant wastewater (PAW), and oxygenated NAs as well as short chain N-containing compounds in concentrate from reverse osmosis unit (ROC) were characteristic DOM constituents for high-salinity point-source PCWs. Spearman correlation analysis indicated that though with relative low pollutant contents (OW) and discharge volume (EDW), N/O/S-containing compounds of OW and EDW greatly contributed to the polar DOM constituents of low-salinity influent in WWTP (R > 0.5, P < 0.001). While N-containing compounds of ROC mainly contributed to the polar DOM of high-salinity influent (R > 0.5, P < 0.001). Though N-/S-containing species in PAW had low contents, they also posed obvious impacts on DOM constituents of high-salinity influent. Interestingly, some O-/S-containing species were newly formed during the confluent process of high-salinity point-source PCWs. The results strengthened the combined contributions of pollutants contents, discharge emission and DOM constituents of point-source PCWs to the water matrix of WWTP influents, which would provide reference for the management of PCW streams.

Peracetic acid activated by ferrous ion mitigates sulfide and methane production in rising main sewers

Iron-based peracetic acid (PAA) advanced oxidation process (AOP) is widely used in water purification because of its high efficiency and low toxicity. In this study, for the first time, ferrous iron (Fe2+) and PAA were dosed jointly into the rising main sewer reactor, to verify the feasibility of sulfide and methane control as well as investigate the comprehensive mechanism of Fe2+/PAA on sewer biofilm. Results demonstrated the superior biocidal effect of Fe2+/PAA dosing than that of PAA alone. Intermittent Fe2+/PAA dosing showed that the average inhibitory rate of sulfide production rate (SPR) and methane production rate (MPR) was 52.0% and 29.9%, respectively, at a Fe2+/PAA molar ratio of 1:1 and PAA concentration of 3 mmol/L (i.e., the mass-based concentrations of Fe2+ and PAA were 6.79 mg-Fe/L and 228 mg/L, respectively). Beside, sewer biofilm was found to be resistant to PAA during repeated dosing events. However, resistance could be alleviated by introducing sulfide in situ in the Fe2+/PAA process, and SPR and MPR were further reduced to 27.39% and 67.32% of the control, respectively. LIVE/DEAD Staining showed that Fe2+/PAA exhibited a strong destructive effect on microbial cells, with the proportion of viable cells being 26.34%. Electron paramagnetic resonance (EPR) and free radical quenching results indicated that the inhibitory order was R-O• > •OH > Fe(IV), which led to the disruption of cellular integrity (i.e., 17.24% increase in LDH) and intracellular enzyme system (i.e., cellular metabolic disorders). Microbial analysis revealed that long-term Fe2+/PAA dosing decreased the sulfate-reducing bacteria (SRB) abundance, and the dominant genus of methanogenic archaea (MA) shifted from Methanofastidiosum, Methanobacterium to Methanosaeta. The cost of Fe2+/PAA dosing on methane and sulfide control in rising main sewers was $1.81/kg-S, economically and environmental-friendly attractive for practical applications.

Stepwise Sulfite Reduction on a Dinuclear Ruthenium Complex Leading to Hydrogen Sulfide

Sulfite reduction by dissimilatory sulfite reductases is a key process in the global sulfur cycle. Sulfite reductases catalyze the 6e- reduction of SO32- to H2S using eight protons (SO32- + 8H+ + 6e- → H2S + 3H2O). However, detailed research into the reductive conversion of sulfite on transition-metal-based complexes remains unexplored. As part of our ongoing research into reproducing the function of reductases using dinuclear ruthenium complex {(TpRu)2(μ-Cl)(μ-pz)} (Tp = HB(pyrazolyl)3), we have targeted the function of sulfite reductase. The isolation of a key SO-bridged complex, followed by a sulfite-bridged complex, eventually resulted in a stepwise sulfite reduction. The reduction of a sulfite to a sulfur monoxide using 4H+ and 4e-, which was followed by conversion of the sulfur monoxide to a disulfide with concomitant consumption of 2H+ and 2e-, proceeded on the same platform. Finally, the production of H2S from the disulfide-bridged complex was achieved.

Approaches to mitigation of hydrogen sulfide during anaerobic digestion process - A review

Anaerobic digestion (AD) is the primary technology for energy production from wet biomass under a limited oxygen supply. Various wastes rich in organic content have been renowned for enhancing the process of biogas production. However, several other intermediate unwanted products such as hydrogen sulfide, ammonia, carbon dioxide, siloxanes and halogens have been generated during the process, which tends to lower the quality and quantity of the harvested biogas. The removal of hydrogen sulfide from wastewater, a potential substrate for anaerobic digestion, using various technologies is covered in this study. It is recommended that microaeration would increase the higher removal efficiency of hydrogen sulfide based on a number of benefits for the specific method. The process is primarily accomplished by dosing smaller amounts of oxygen in the digester, which increases the system's oxidizing capacity by rendering the sulfate reducing bacteria responsible for converting sulfate ions to hydrogen sulfide inactive. This paper reviews physicochemical and biological methods that have been in place to eliminate the effects of hydrogen sulfide from wastewater treated anaerobically and future direction to remove hydrogen sulfide from biogas produced.

Effect of Different Catholytes on the Removal of Sulfate/Sulfide and Electricity Generation in Sulfide-Oxidizing Fuel Cell

Microbial fuel cells are one of the alternative methods that generate green, renewable sources of energy from wastewater. In this study, a new bio-electrochemical system called the sulfide-oxidizing fuel cell (SOFC) is developed for the simultaneous removal of sulfide/sulfide and electricity generation. To improve the application capacity of the SOFC, a system combining sulfate-reducing and sulfide-oxidizing processes for sulfate/sulfide removal and electricity generation was designed. Key factors influencing the sulfide-removal efficiency and electricity-generation capacity of the SOFC are the anolytes and catholytes. The sulfide produced from the sulfate-reducing process is thought to play the key role of an electron mediator (anolyte), which transfers electrons to the electrode to produce electricity. Sulfide can be removed in the anodic chamber of the SOFC when it is oxidized to the element sulfur (S°) through the biochemical reaction at the anode. The performance of wastewater treatment for sulfate/sulfide removal and electricity generation was evaluated by using different catholytes (dissolved oxygen in deionized water, a phosphate buffer, and ferricyanide). The results showed that the sulfate-removal efficiency is 92 ± 1.2% during a 95-day operation. A high sulfide-removal efficiency of 93.5 ± 1.2 and 83.7 ± 2% and power density of 18.5 ± 1.1 and 15.2 ± 1.2 mW/m2 were obtained with ferricyanide and phosphate buffers as the catholyte, respectively, which is about 2.6 and 2.1 times higher than dissolved oxygen being used as a catholyte, respectively. These results indicated that cathode electron acceptors have a direct effect on the performance of the treatment system. The sulfide-removal efficiency and power density of the phosphate buffer SOFC were only slightly less than the ferricyanide SOFC. Therefore, a phosphate buffer could serve as a low-cost and effective pH buffer for practical applications, especially for wastewater treatment. The results presented in this study clearly revealed that the integrated treatment system can be effectively applied for sulfate/sulfide removal and electricity generation simultaneously.

Treatment of Organic and Sulfate/Sulfide Contaminated Wastewater and Bioelectricity Generation by Sulfate-Reducing Bioreactor Coupling with Sulfide-Oxidizing Fuel Cell

A wastewater treatment system has been established based on sulfate-reducing and sulfide-oxidizing processes for treating organic wastewater containing high sulfate/sulfide. The influence of COD/SO42- ratio and hydraulic retention time (HRT) on removal efficiencies of sulfate, COD, sulfide and electricity generation was investigated. The continuous operation of the treatment system was carried out for 63 days with the optimum COD/SO42- ratio and HRT. The result showed that the COD and sulfate removal efficiencies were stable, reaching 94.8 ± 0.6 and 93.0 ± 1.3% during the operation. A power density level of 18.0 ± 1.6 mW/m2 was obtained with a sulfide removal efficiency of 93.0 ± 1.2%. However, the sulfide removal efficiency and power density decreased gradually after 45 days. The results from scanning electron microscopy (SEM) with an energy dispersive X-ray (EDX) show that sulfur accumulated on the anode, which could explain the decline in sulfide oxidation and electricity generation. This study provides a promising treatment system to scale up for its actual applications in this type of wastewater.

Development of microbial enrichments for simultaneous removal of sulfur and nitrogenous metabolites in saline water aquaculture

AIM

The aim of the study was to develop microbial enrichments from the nitrifying microbial consortia and the environment for simultaneous removal of ammonia, nitrate, and sulfide in aquaculture systems at varied salinities.

METHODS AND RESULTS

Sulfur and nitrogen metabolites are the major factors affecting the farmed aquatic animal species and deteriorate the receiving environments causing ecological damage. The present study reports the development of microbial enrichments from the nitrifying microbial consortia and the environment. The enrichments used thiosulfate or thiocyanate as an energy source and simultaneously removed sulfur, ammonia, and nitrite in spiked medium (125 mg/l ammonia; 145 mg/l nitrite). Further, the microbes in the enrichments could grow up to 30 g/l salinity. Metagenomic studies revealed limited microbial diversity suggesting the enrichment of highly specialized taxa, and co-occurrence network analysis showed the formation of three micro-niches with multiple interactions at different taxonomic levels.

CONCLUSIONS

The ability of the enrichments to grow in both organic and inorganic medium and simultaneous removal of sulfide, ammonia, and nitrite under varied salinities suggests their potential application in sulfur, nitrogen, and organic matter-rich aquaculture pond environments and other industrial effluents.

Study on the treatment of sulfite wastewater by Desulfovibrio

In the wet flue gas desulfurization (WFGD) process, SO₂ is adsorbed by alkaline liquor to produce alkaline wastewater containing sulfate and sulfite. Although the traditional chemical treatment method can achieve a high removal rate, it consumes a large number of chemicals and yields a large number of low-value by-products. The biological treatment process is a greener and more environmentally friendly treatment method. The current work studies microbial flue gas desulfurization directly using sulfite as the electron acceptor in the reduction process. Desulfovibrio were obtained by isolation and purification, and their growth conditions in sulfite wastewater and desulfurization process conditions were investigated by intermittent and continuous experiments. The results of intermittent experiments indicated that the optimal growth conditions of Desulfovibrio were a temperature of 38 °C, a pH value of 8.0, a COD/SO₃^2- of 2 and that the growth of bacteria would be inhibited at a pH above 9.0 or below 7.3. Furthermore, Desulfovibrio could grow in simulated wastewater with a high SO₃^2- concentration of 8000 mg/L. The results of continuous experiments showed that the removal of sulfite and the recovery of elemental sulfur was realized by a micro-oxygen depletion process, and the removal rate of sulfite of 99%, the yield of elemental sulfur is more than 80% and can reach 90% under the condition of low influent concentration. The bacteria grew well at a temperature of 40 °C and a pH value of the influent water of 7.5. To ensure the treatment effect, the hydraulic retention time (HRT) should be more than doubled for each 1000 mg/L increase in the influent sulfite concentration under the same reflux ratio. When the influent sulfite concentration was 1000 mg/L, 2000 mg/L, 3000 mg/L, and 4000 mg/L, the corresponding HRT was 3.01 h, 6.94 h, 17.4 h, and 31.9 h, respectively. The dominant species in the reactor was Desulfovibrio bacteria at 63.9% abundance. This study demonstrated the feasibility of using sulfite as an electron acceptor for microbial desulfurization, which can optimize the initial process and provide the possibility of treating high-concentration sulfite wastewater.

Effects of microorganisms on the migration and transformation of typical heavy metal (loid)s in mercury-thallium mining waste slag during the combined application of fish manure and natural minerals

Mercury-thallium mining waste slag has the characteristics of extremely acidic, low fertility and highly toxic polymetallic composite pollution, making it difficult to be treated. We use nitrogen- and phosphorus-rich natural organic matter (fish manure) and calcium- and phosphorus-rich natural minerals (carbonate and phosphate tailings) individually or in combination to amend the slag, analyze their effects on the migration and transformation of potentially toxic elements (Tl and As) in the waste slag. We set up sterile and non-sterile treatments specifically to further investigate the direct or indirect effect of microorganisms attached to added organic matter on Tl and As. The results showed that addition of fish manure and natural minerals to the non-sterile treatments promoted the release of As and Tl, resulting in an increase in As and Tl concentrations in the tailing lixiviums from 0.57 to 2.38-6.37 μg/L and from 69.92 to 107.51-157.21 μg/L, respectively. Sterile treatments promoted the release of As (from 0.28 to 49.88-104.18 μg/L) and inhibited the release of Tl (from 94.53 to 27.60-34.50 μg/L). Use of fish manure and natural minerals alone or in combination significantly reduced the biotoxicity of the mining waste slag, in which the combination was more efficient. XRD analysis showed that microorganisms in the medium promoted the dissolution of jarosite and other minerals, which indicated that the release and migration of As and Tl in Hg-Tl mining waste slag were closely related to microbial activities. Furthermore, metagenomic sequencing revealed that microorganisms such as Prevotella, Bacteroides, Geobacter, and Azospira, which were abundant in the non-sterile treatments, had remarkable resistance to a variety of highly toxic heavy metals and could affect the dissolution of minerals and the release and migration of heavy metals through redox reactions. Our results may aid in the rapid soilless ecological restoration of related large multi-metal waste slag dumps.

Reduced sulfide and methane in rising main sewer via calcium peroxide dosing: Insights from microbial physiological characteristics, metabolisms and community traits

Although the biocidal effect of calcium peroxide (CaO2) has attracted increasing attention in wastewater and sludge management, its potential in the reduction of sulfide and methane from sewer is not tapped. This study aims to fill this gap through the long-term operated sewer reactors. Results showed one-time dose of 0.2% (w/v) CaO2 with 12-h exposure decreased the average sulfide and methane production by 80% during one week. The electron paramagnetic resonance and free radical quenching tests indicated free radicals from CaO2 decomposing posed a major contribution on sewer biofilms (•OH>•O2->alkali). Mechanistic analysis revealed extracellular polymeric matrix breakdown (e.g., protein secondary structure) and cell membrane damage were caused by the increased lipid peroxidation of cells and exacerbated intracellular reactive oxygen species under CaO2 stress. Moreover, the intracellular metabolic pathways, such as electrons provision and transfer, as well as pivotal enzymatic activities (e.g., APS reductase, sulfite reductase and coenzymes F420) were significantly impaired. RT-qPCR analysis unveiled the absolute abundances of dsrA and mcrA were decreased by 7.53-40.37% and 67.00-74.85%, respectively. Although this study broadens the application scope of CaO2 and provides in-depth understanding of advanced oxidation-based technology in sewer management, the pipe scale risk due to the release of calcium ions warrants further investigation.

Effects of organic substrates on sulfate-reducing microcosms treating acid mine drainage: Performance dynamics and microbial community comparison

Bioremediation techniques utilizing sulfate-reducing bacteria (SRB) for acid mine drainage (AMD) treatment have attracted growing attention in recent years, yet substrate bioavailability for SRB is a key factor influencing treatment effectiveness and long-term stability. This study investigated the effects of external organic substrates, including four complex organic wastes (i.e., sugarcane bagasse, straw compost, shrimp shell (SS), and crab shell (CS)) and a small-molecule organic acid (i.e., propionate), on AMD removal performance and associated microbial communities during the 30-day operation of sulfate-reducing microcosms. The results showed that the pH values increased in all five microcosms, while CS exhibited the highest neutralization ability and a maximum alkalinity generation of 1507 mg/L (as CaCO₃). Sulfate reduction was more effective in SS and CS microcosms, with sulfate removal efficiencies of 95.6% and 86.0%, respectively. All sulfate-reducing microcosms could remove heavy metals to different degrees, with the highest removal rate of >99.0% observed for aluminum. The removal efficiency of manganese, the most recalcitrant metal, was the highest (96%) in the CS microcosm. Correspondingly, SRB was more abundant in the CS and SS microcosms as revealed by sequencing analysis, while Desulfotomaculum was the dominant SRB in the CS microcosm, accounting for 10.8% of total effective bacterial sequences. Higher abundances of functional genes involved in fermentation and sulfur cycle were identified in CS and SS microcosms. This study suggests that complex organic wastes such as CS and SS could create and maintain preferable micro-environments for active growth and metabolism of functional microorganisms, thus offering a cost-efficient, stable, and environmental-friendly solution for AMD treatment and management.

Characterization of sulfide oxidation and optimization of sulfate production by a thermophilic Paenibacillus naphthalenovorans LYH-3 isolated from sewage sludge composting

The sulfur-containing odor emitted from sludge composting could be controlled by sulfide oxidizing bacteria, yet mesophilic strains show inactivation during the thermophilic stage of composting. Aimed to investigate and characterize the thermotolerant bacterium that could oxidize sulfide into sulfate, a heterotrophic strain was isolated from sewage sludge composting and identified as Paenibacillus naphthalenovorans LYH-3. The effects of various environmental factors on sulfide oxidation capacities were studied to optimize the sulfate production, and the highest production rate (27.35% ± 0.86%) was obtained at pH 7.34, the rotation speed of 161.14 r/min, and the inoculation amount of 5.83% by employing Box-Behnken design. The results of serial sulfide substrates experiments indicated that strain LYH-3 could survive up to 400 mg/L of sulfide with the highest sulfide removal rate (88.79% ± 0.35%) obtained at 50 mg/L of sulfide. Growth kinetic analysis presented the maximum specific growth rate µ_m (0.5274 hr^-1) after 22 hr cultivation at 50°C. The highest enzyme activities of sulfide quinone oxidoreductase (0.369 ± 0.052 U/mg) and sulfur dioxygenase (0.255 ± 0.014 U/mg) were both obtained at 40°C, and the highest enzyme activity of sulfite acceptor oxidoreductase (1.302 ± 0.035 U/mg) was assessed at 50°C. The results indicated that P. naphthalenovorans possessed a rapid growth rate and efficient sulfide oxidation capacities under thermophilic conditions, promising a potential application in controlling sulfur-containing odors during the thermophilic stage of sludge composting.

Photoautotrophic removal of hydrogen sulfide from biogas using purple and green sulfur bacteria

Biogas desulfurization based on anoxygenic photosynthetic processes represents an alternative to physicochemical technologies, decreasing the risk of O₂ and N₂ contamination. This work aimed at assessing the potential of Allochromatium vinosum and Chlorobium limicola for biogas desulfurization under different light intensities (10 and 25 klx) and H₂S concentrations (1 %, 1.5 % and 2 %) in batch photobioreactors. In addition, the influence of rising biogas flow rates (2.9, 5.8 and 11.5 L d^-1 in stage I, II and III, respectively) on the desulfurization performance in a 2.3 L photobioreactor utilizing C. limicola under continuous mode was assessed. The light intensity of 25 klx negatively influenced the growth of A. vinosum and C. limicola, resulting in decreased H₂S removal capacity. An increase in H₂S concentrations resulted in higher volumetric H₂S removal rates in C. limicola (2.9-5.3 mg L^-1 d^-1) tests compared to A. vinosum (2.4-4.6 mg L^-1 d^-1) tests. The continuous photobioreactor completely removed H₂S from biogas in stage I and II. The highest flow rate in stage III induced a deterioration in the desulfurization activity of C. limicola. Overall, the high H₂S tolerance of A. vinosum and C. limicola supports their use in H₂S desulfurization from biogas.

Evaluation of microaeration strategies in the digestion zone of UASB reactors as an alternative for biogas desulfurization

This study aimed at evaluating the microaeration as an alternative for hydrogen sulfide removal from biogas of UASB reactors treating sewage. The set-up consisted of two pilot-scale UASB reactors, including a conventional anaerobic and a modified UASB reactor, operated under microaerated conditions. Air was supplied in the digestion zone, at 1 and 3 m from the bottom of the reactor, and three different air flows were investigated: 10, 20, and 30 mL.min^-1, corresponding to 0.003, 0.005 and 0.005 LO₂/L_influent, respectively. The main results showed that the microaeration provided a substantial decrease in hydrogen sulfide concentrations when compared to the concentrations observed in the biogas of the anaerobic UASB reactor. Hydrogen sulfide concentrations remained below 70 ppm_v throughout the experimental period, corresponding to an average removal efficiency of 98%. Although a decrease in methane concentrations in biogas was observed, the feasibility of energy use would not be affected. The effect of microaeration on the overall performance of the reactor was evaluated, however, no significant differences were observed. The feasibility of limiting aeration conditions in the reactor digestion zone as an efficient alternative for hydrogen sulfide removal from biogas was demonstrated.

Investigation of carbon steel corrosion by oilfield nitrate- and sulfate-reducing prokaryotes consortia in a hypersaline environment

Microbiologically influenced corrosion (MIC) behavior of the AISI 1020 carbon steel caused by consortia of nitrate-reducing prokaryotes (NRP) and sulfate-reducing prokaryotes (SRP) was investigated separately in hypersaline seawater conditions. Microbiological analysis, surface images, characterization of corrosion products, weight loss, and electrochemical measurements were employed to monitor the corrosion process for 10 days at 40 °C. Compared to abiotic corrosion (control), the extent of corrosion was more aggravated in the conditions with microbial consortia. It corroborates the critical role of microbial activity in corrosion processes in natural and industrial environments since microorganisms are widely spread. Corrosion rates obtained from Tafel extrapolation were statically equal for both microbial consortia (0.093 ± 0.009 mm.y^-1); however, the maximum pit depth on the steel surface subjected to NRP-MIC was about 25% deeper (48.5 µm) than that caused by SRP-MIC (32.6 µm). In contrast, SRP activity almost doubled the number of pits on the steel surface (2.7 × 10⁴ ± 4.1 × 10³ pits.m^-2), resulting in more weight loss than NRP activity. In addition, SRP cells formed nanowires to support direct electron uptake from steel oxidation. This research contributes to the understanding of steel corrosion mechanisms in hypersaline environments with the prevalence of NRP or SRP, as oil reservoirs undergo nitrate injection treatments.

Roles, mechanism of action, and potential applications of sulfur-oxidizing bacteria for environmental bioremediation

Sulfur (S) is a crucial component in the environment and living organisms. This work is the first attempt to provide an overview and critical discussion on the roles, mechanisms, and environmental applications of sulfur-oxidizing bacteria (SOB). The findings reveal that key enzymes of SOB embarked on oxidation of sulfide, sulfite, thiosulfate, and elemental S. Conversion of reduced S compounds was oxidatively catalyzed by various enzymes (e.g. sulfide: quinone oxidoreductase, flavocytochrome c-sulfide dehydrogenase, dissimilatory sulfite reductase, heterodisulfide reductase-like proteins). Environmental applications of SOB discussed include detoxifying hydrogen sulfide, soil bioremediation, and wastewater treatment. SOB producing S⁰ engaged in biological S soil amendments (e.g. saline-alkali soil remediation, the oxidation of sulfide-bearing minerals). Biotreatment of H₂S using SOB occurred under both aerobic and anaerobic conditions. Sulfide, nitrate, and sulfamethoxazole were removed through SOB suspension cultures and S⁰-based carriers. Finally, this work presented future perspectives on SOB development, including S⁰ recovery, SOB enrichment, field measurement and identification of sulfur compounds, and the development of mathematical simulation.

Coupling sulfur-based denitrification with anammox for effective and stable nitrogen removal: A review

Anoxic ammonium oxidation (anammox) is an energy-efficient nitrogen removal process for wastewater treatment. However, the unstable nitrite supply and residual nitrate in the anammox process have limited its wide application. Recent studies have proven coupling of sulfur-based denitrification with anammox (SDA) can achieve an effective nitrogen removal, owing to stable provision of substrate nitrite from the sulfur-based denitrification, thus making its process control more efficient in comparison with that of partial nitrification and anammox process. Meanwhile, the anammox-produced nitrate can be eliminated through sulfur-based denitrification, thereby enhancing SDA's overall nitrogen removal efficiency. Nonetheless, this process is governed by a complex microbial system that involves both complicated sulfur and nitrogen metabolisms as well as multiple interactions among sulfur-oxidising bacteria and anammox bacteria. A comprehensive understanding of the principles of the SDA process is the key to facilitating the development and application of this novel process. Hence, this review is conducted to systematically summarise various findings on the SDA process, including its associated biochemistry, biokinetic reactions, reactor performance, and application. The dominant functional bacteria and microbial interactions in the SDA process are further discussed. Finally, the advantages, challenges, and future research perspectives of SDA are outlined. Overall, this work gives an in-depth insight into the coupling mechanism of SDA and its potential application in biological nitrogen removal.

pH mediated assemblage of carbon, nitrogen, and sulfur related microbial communities in petroleum reservoirs

Microorganisms are the core drivers of biogeochemistry processes in petroleum reservoirs and have been widely used to enhance petroleum recovery. However, systematic information about the microbial communities related to the C-N-S cycle in petroleum reservoirs under different pH conditions remains poorly understood. In this study, 16S rRNA gene data from 133 petroleum samples were collected, and 756 C-N-S related genera were detected. The Chao1 richness and Shannon diversity indices for the C-N-S-related microbial communities showed significant differences among different pH conditions and at the lowest levels in acidic conditions with pH values of 4.5-6.5. In addition, pH was the most important factor influencing the C-N-S related microbial communities and contributed to 17.95% of the variation in the methanogenesis community. A total of 55 functional genera were influenced by pH, which accounted for 42.08% of the C-N-S related genera. Among them, the genera Pseudomonas and Arcobacter were the highest and were concentrated in acidic conditions with pH values of 4.5-6.5. In parallel, 56 predicted C-N-S related genes were examined, and pH affected 16 of these genes, including putative chitinase, mcrA, mtrB, cysH, narGHIVYZ, nirK, nirB, nifA, sat, aprAB, and dsrAB. Furthermore, the co-occurrence networks of the C-N-S related microbial communities distinctly varied among the different pH conditions. The acidic environment exhibited the lowest complex network with the lowest keystone taxa number, and Escherichia-Shigella was the only keystone group that existed in all three networks. In summary, this study strengthened our knowledge regarding the C-N-S related microbial communities in petroleum reservoirs under different pH conditions, which is of great significance for understanding the microbial ecology and geochemical cycle of petroleum reservoirs.

In-Situ Sludge Reduction Performance and Mechanism in Sulfidogenic Anoxic-Oxic-Anoxic Membrane Bioreactors

The excess sludge generated from the activated sludge process remains a big issue. Sustainable approaches that achieve in situ sludge reduction with satisfactory effluent quality deserve attention. This study explored the sludge reduction performance of sulfidogenic anoxic-oxic-anoxic (AOA) membrane bioreactors. The dynamics of the microbial community and metabolic pathways were further analyzed to elucidate the internal mechanism of sludge reduction. Compared with the conventional anoxic-oxic-oxic membrane bioreactor (MBR_control), AOA_S150 (150 mg/L SO₄^2- in the membrane tank) and AOA_S300 (300 mg/L SO₄^2- in the membrane tank) reduced biomass production by 40.39% and 47.45%, respectively. The sulfide reduced from sulfate could enhance the sludge decay rate and decrease sludge production. Extracellular polymeric substances (EPSs) destruction and aerobic lysis contributed to sludge reduction in AOA bioreactors. The relative abundance of Bacteroidetes (phylum), sulfate-reducing bacteria (SRB, genus), and Ignavibacterium (genus) increased in AOA bioreactors compared with MBR_control. Our metagenomic analysis indicated that the total enzyme-encoding genes involved in glycolysis, denitrification, and sulfate-reduction processes decreased over time in AOA_S300 and were lower in AOA_S300 than AOA_S150 at the final stage of operation. The excess accumulation of sulfide in AOA_S300 may inactive the functional bacteria, and sulfide inhibition induced sludge reduction.

Assessing Alternative Supporting Organic Materials for the Enhancement of Water Reuse in Subsurface Constructed Wetlands Receiving Acid Mine Drainage

Acid mine drainage (AMD) is a global problem with severe consequences for the environment. South Africa’s abandoned mines are a legacy from the country’s economic dependence on the mining sector, with consequent negative impacts on ecosystems. AMD remediation includes active and passive techniques. Constructed wetlands (a passive technique) have lower operational costs but require larger spaces and longer timeframes to achieve the remediation of AMD, and are supported by anaerobic sulphate-reducing bacteria (SRB), which capable of remediating high-sulphate-laden AMD while precipitating dissolved metals from the AMD. Organic substrates supporting these activities are often the limiting factor. When enhancing existing passive AMD remediation technologies, alternative waste material research that may support SRB activity is required to support the circular economy through the reduction in waste products. Chicken feathers show potential as a substrate enhancer, boosting organic carbon availability to SRB, which sustains passive AMD treatment processes by achieving pH elevation, sulphate and metal reductions in AMD water for reuse. Microbial biodiversity is essential to ensure the longevity of passive treatment systems, and chicken feathers are proven to have an association with SRB microbial taxa. However, the longer-term associations between the AMD water parameters, microbial diversity and the selected substrates remain to be further investigated.

Advances in elemental sulfur-driven bioprocesses for wastewater treatment: From metabolic study to application

Elemental sulfur (S0) is known to be an abundant, non-toxic material with a wide range of redox states (-2 to +6) and may serve as an excellent electron carrier in wastewater treatment. In turn, S0-driven bioprocesses, which employ S0 as electron donor or acceptor, have recently established themselves as cost-effective therefore attractive solutions for wastewater treatment. Numerous related processes have, to date, been developed from laboratory experiments into full-scale applications, including S0-driven autotrophic denitrification for nitrate removal and S0-reducing organic removal. Compared to the conventional activated sludge process, these bioprocesses require only a small amount of organic matter and produce very little sludge. There have been great efforts to characterize chemical and biogenic S0 and related functional microorganisms in order to identify the biochemical pathways, upgrade the bioprocesses, and assess the impact of the operating factors on process performance, ultimately aiming to better understand and to optimize the processes. This paper is therefore a comprehensive overview of emerging S0-driven biotechnologies, including the development of S0-driven autotrophic denitrification and S0-based sulfidogenesis, as well as the associated microbiology and biochemistry. Also reviewed here are the physicochemical characteristics of S0 and the effects that environmental factors such as pH, influent sulfur/nitrate ratio, temperature, S0 particle size and reactor configurations have on the process. Research gaps, challenges of process applications and potential areas for future research are further proposed and discussed.

Microbial transformations by sulfur bacteria can recover value from phosphogypsum: A global problem and a possible solution

Rising global population and affluence are increasing demands for food production and the phosphorus (P) fertilizers needed to grow that food. Essential are new approaches for managing the growing amount of phosphogypsum (PG) that is a by-product of phosphoric-acid production from phosphate rock. Today, only ~15% of the worldwide production of PG is recycled, mainly for agriculture and road construction. This review addresses microbial valorization of PG through strategies that apply sulfur-transforming bacteria: sulfate-reducing bacteria (SRB) and sulfur-oxidizing bacteria (SOB). The focus is on recovering elemental sulfur (S⁰), which can be used to make the sulfuric acid needed to produce phosphoric acid from rock phosphate. Our review provides in-depth understanding of the microbiological, chemical, and technological bases for microbial reclamation of S⁰ from PG. The review presents the principles and practices for sulfate leaching from PG, reduction of sulfate to sulfide by SRB, and oxidation of sulfide to S⁰ by SOB. The choice of electron donor for SRB, control of oxygen delivery to SOB, and nutrient requirements are emphasized. Although microorganism-based technologies for PG reclamation are far from mature, the efficiency of such SRB- and SOB-based processes has been documented at laboratory and industrial scales. This review should spur biotechnological advances toward recovering value from PG.

Evaluation of continuous and intermittent trickling strategies for the removal of hydrogen sulfide in a biotrickling filter

Biotrickling filter (BTF) is a widely applied bioreactor for odour abatement in sewer networks. The trickling strategy is vital for maintaining a sound operation of BTF. This study employed a lab-scale BTF packed with granular activated carbon at a short empty bed residence time of 6 s and pH 1-2 to evaluate different trickling strategies, i.e., continuous trickling (different velocities) and intermittent trickling (different trickling intervals), in terms of the removal of hydrogen sulfide (H₂S), bed pressure drop, H₂S oxidation products and microbial community. The H₂S removal performance decreased with the trickling velocity (∼3.6 m/h) in BTF. In addition, three intermittent trickling strategies, i.e., 10-min trickling per 24 h, 8 h, and 2 h, were investigated. The H₂S elimination capacity deteriorated after about 2 weeks under both 10-min trickling per 24 h and 8 h. For both intermittent (10-min trickling per 2 h) and continuous trickling, the BTF exhibited nearly 100 % H₂S removal for inlet H₂S concentrations<100 ppmv, but intermittent BTF showed better removal performance than continuous trickling when inlet H₂S increased to 120-190 ppmv. Furthermore, the bed pressure drops were 333 and 3888 Pa/m for non-trickling and trickling periods, respectively, which makes intermittent BTF save 83 % energy consumption of the blower compared with continuous tirckling. However, intermittent BTF exhibited transient H₂S breakthrough (<1 ppmv) during trickling periods. Moreover, elemental sulfur and sulfate were major products of H₂S oxidation and Acidithiobacillus was the dominant genus in both intermittent and continuous trickling BTF. A mathematical model was calibrated for the intermittent BTF and a sensitivity analysis was performed on the model. It shows mass transfer parameters determine the H₂S removal. Overall, intermittent trickling strategy is promising for improving odour abatement performance and reducing the operating cost of the BTF.

Characterization of the biofilm structure and microbial diversity of sulfate-reducing bacteria from petroleum produced water supplemented by different carbon sources

Colonization by sulfate-reducing bacteria (SRB) in environments associated with oil is mainly dependent on the availability of sulfate and carbon sources. The formation of biofilms by SRB increases the corrosion of pipelines and oil storage tanks, representing great occupational and operational risks and respective economic losses for the oil industry. The aim of this study was to evaluate the influence of the addition of acetate, butyrate, lactate, propionate and oil on the structure of biofilm formed in carbon steel coupons, as well as on the diversity of total bacteria and SRB in the planktonic and sessile communities from petroleum produced water. The biofilm morphology, chemical composition, average roughness and the microbial diversity was analyzed. In all carbon sources, formation of dense biofilm without morphological and/or microbial density differences was detected, with the most of cells observed in the form of individual rods. The diversity and richness indices of bacterial species in the planktonic community was greater than in the biofilm. Geotoga was the most abundant genus, and more than 85% of SRB species were common to all treatments. The functional predicted profile shown that the observed genres in planktonic communities were related to the reduction of sulfate, sulfite, elementary sulfur and other sulfur compounds, but the abundance varied between treatments. For the biofilm, the functions predicted profile for the oil treatment was the one that most varied in relation to the control, while for the planktonic community, the addition of all carbon sources interfered in the predicted functional profile. Thus, although it does not cause changes in the structure and morphology biofilm, the supplementation of produced water with different carbon sources is associated with changes in the SRB taxonomic composition and functional profiles of the biofilm and the planktonic bacterial communities.

Isolation and application of a mixotrophic sulfide-oxidizing Cohnella thermotolerans LYH-2 strain to sewage sludge composting for hydrogen sulfide odor control

To investigate the influences of sulfide oxidizing bacteria on H₂S odor control in sewage sludge composting, a facultative chemolithotroph strain was isolated and identified as Cohnella thermotolerans LYH-2. Strain LYH-2 decreased the initially added sulfide by 94.6% when glucose and NH₄Cl were used as the optimal energy substrates. The biotransformation of sulfide substrates followed first-order reaction kinetics, and the highest degradation rate constant (0.0537 h^-1) and bacterial dry weight (0.745 g/L) were obtained at 300 mg/L of initial sulfide. The C. thermotolerans strain was inoculated as the bacterial agent into the sewage sludge and rice husk composting in forced ventilation composting reactors for 25 d; the bacterial inoculation prolonged the thermophilic period by 2 d, decreased 35.4% of H₂S odor emission, and accelerated the composting process compared to the control group. The results demonstrated that C. thermotolerans inoculants effectively controlled H₂S emission and promoted maturity in sewage sludge composting.

Efficient nitrite accumulation and elemental sulfur recovery in partial sulfide autotrophic denitrification system: Insights of seeding sludge, S/N ratio and flocculation strategy

Partial sulfide autotrophic denitrification (PSAD) has been proposed as a promising process to achieve elemental sulfur recovery and nitrite accumulation, which is required for anaerobic ammonium oxidation reaction. This study investigated the effect of seeding sludge on the start-up performance of PSAD process, with different sludge taken from the oxidation zone (S-o) of wastewater treatment plants, partial denitrification reactor (S-_PD), and anoxic/oxic reactor (S-_A/O). The results showed that the PSAD process could be achieved rapidly in three systems on day 22, 29 and 26, respectively. In particular, the S-_O system completed the start-up in the shortest time of 22 d, with NO₃^--N and S^2- removal efficiency of 85.3% and 99.3%, respectively. Selected the S-_O system to operate long term, the nitrite (NO₂^--N) and biological elemental sulfur (S⁰) accumulation efficiencies were systematically investigated under different S/N ratios (in a range of 0.71-1.2). The maximum NO₂^--N and S⁰ accumulation efficiencies were 85.2% and 73.5%, respectively, at the S/N ratio of 1.1. In addition, the separation and recovery of S⁰ in effluent was achieved by employing polyaluminum chloride (PAC) as a flocculant. Using 2D Gaussian function as quadratic model for the maximizing of S⁰ flocculant efficiency (SFR), an optimal condition of PAC dosage 7.92 mL/L and pH 5.14 was obtained, and the SFR reached 94.1%, under such conditions. The findings offered useful information to facilitate the application of the PSAD process.

Regulating intermediates to realize the coupled hydrion with biology polysulfide in wastewater treatment

The purpose of this study is to clarify the mechanism of the coupled hydrion with biology polysulfide in the simultaneous denitrification and desulfurization process. The coupled hydrion with biology polysulfide, uncoupled hydrion with biology polysulfide and no polysulfide experiments were performed in wastewater with two kinds of sulfide loads (100 and 200 mg/L). When the concentration of thiosulfate was suitable, the free H⁺ concentration (74.2 and 91.0 mg/L) and the proportion of Thiobacillus denitrificans (85.4% and 59.7%) were both higher under the two kinds of sulfide loading conditions (100 and 200 mg/L), and coupled hydrion with biology polysulfide was realized (the production of elemental sulfur is as high as 33 and 101 mg/L). Further analysis shown that the way of coupled hydrion with biology polysulfide were both: 2.0S2-+6.4NO3-+30.1H++21.7e-→1.0S2-+1.0SO42-+3.2N2+15.0H2O. In addition, for the coupled hydrion with biology polysulfide, more nitrates could be utilized to produce elemental sulfur S⁰, and the lower ratio of H⁺/S⁰ and SO42-/S0 were observed (S^2- = 100 mg/L: 2.3 and 0.9; S^2- = 200 mg/L: 0.9 and 0.03), which could promote the growth of Thiobacillus denitrificans and increase the proportion of Thiobacillus denitrificans. This maybe one of the reasons why coupled hydrion with biology polysulfide could be achieved.

Biological elimination of a high concentration of hydrogen sulfide from landfill biogas

Hydrogen sulfide (H₂S) is one of the main contaminants found in biogas, which is one of the end products of the anaerobic biodegradation of proteins and other sulfur-containing compounds in solid waste. The presence of H₂S is one of the factors limiting the valorization of biogas. To valorize biogas, H₂S must be removed. This study evaluated the performance of a pilot-scale biotrickling filter system on H₂S removal from landfill biogas. The biotrickling filter system, which was packed with stainless-steel pall rings and inoculated with an H₂S-oxidizing consortium, was designed to process 1 SCFM of biogas, which corresponds to an empty bed residence time (EBRT) of 3.9 min and was used to determine the removal efficiency of a high concentration of hydrogen sulfide from landfill biogas. The biofiltration system consisted of two biotrickling filters connected in series. Results indicate that the biofiltration system reduced H₂S concentration by 94 to 98% without reducing the methane concentration in the outlet biogas. The inlet concentration of hydrogen sulfide, supplied to the two-phase bioreactor, was in the range of 900 to 1500 ppmv, and the air flow rate was 0.1 CFM. The EBRTs of the two biotrickling filters were 3.9 and 0.9 min, respectively. Approximately 50 ± 15.7 ppmv of H₂S gas was detected in the outlet gas. The maximum elimination capacity of the biotrickling filter system was found to be 24 g H₂S·m^-3·h^-1, and the removal efficiency was 94 ± 4.4%. During the biological process, the performance of the biotrickling filter was not affected when the pH of the recirculated liquid decreased to 2-3. The overall performance of the biotrickling filter system was described using a modified Michaelis-Menten equation, and the K_s and V_m values for the biosystem were 34.7 ppmv and 20 g H₂S·m^-3·h^-1, respectively.

The potential of electrotrophic denitrification coupled with sulfur recycle in MFC and its responses to COD/SO42- ratios

Electrotrophic denitrification is a promising novel nitrogen removal technique. In this study, the performance and the mechanism of electrotrophic denitrification coupled with sulfate-sulfide cycle were investigated under different anodic influent COD/SO₄^2- ratios. The results showed that electrotrophic denitrification contributed to more than 22% total nitrogen removal in cathode chamber. Higher COD/SO₄^2- ratios would deteriorate the sulfate reduction but enhance methane production. Further mass balance indicated that the electron flow utilized by methanogenic archaea (MA) increased while that utilized by sulfate-reducing bacteria (SRB) decreased as the COD/SO₄^2- ratio increased from 0.44 to 1.11. However, higher COD/SO₄^2- ratios would produce more electrons to strengthen electrotrophic denitrification. Microbial community analysis showed that the biocathode was predominantly covered by Thiobacillus that encoded with narG gene. These findings collectively suggest that electrotrophic denitrification could be a sustainable approach to simultaneously remove COD and nitrogen under suitable COD/SO₄^2- ratio based on sulfur cycle in wastewater.

Microbial sulfite oxidation coupled to nitrate reduction in makeup water for oil production

Bisulfite is used as an oxygen scavenger in waters used for oil production to prevent oxygen-mediated pipeline corrosion. Analysis of nitrate-containing water injected with ammonium bisulfite indicated increased concentrations of ammonium, sulfate and nitrite. To understand the microbial process causing these changes, water samples were used in enrichments with bisulfite and nitrate. Oxidation of bisulfite, reduction of nitrate, change in microbial community composition and corrosivity of bisulfite were determined. The results indicated that the microbial community was dominated by Sulfuricurvum, a sulfite-oxidizing nitrate-reducing bacterium (StONRB). Plating of the enriched StONRB culture yielded the bacterial isolate Sulfuricurvum sp. TK005, which coupled bisulfite oxidation with nitrate reduction to form sulfate and nitrite. Bisulfite also induced chemical corrosion of carbon steel at a rate of 0.28 ± 0.18 mm yr^-1. Bisulfite and the generated sulfate could serve as electron acceptors for sulfate-reducing microorganisms (SRM), which reduce sulfate and bisulfite to sulfide. Nitrate is frequently injected to injection waters to contain the activity of SRM in oil reservoirs. This study suggests an alternative bisulfite injection procedure: Injection of nitrate after the chemical reaction of bisulfite with oxygen is completed. This could maintain the oxygen scavenger function of bisulfite and SRM inhibitory activity of nitrate.

Development of whole-cell catalyst system for sulfide biotreatment based on the engineered haloalkaliphilic bacterium

Microorganisms play an essential role in sulfide removal. Alkaline absorption solution facilitates the sulfide’s dissolution and oxidative degradation, so haloalkaliphile is a prospective source for environmental-friendly and cost-effective biodesulfurization. In this research, 484 sulfide oxidation genes were identified from the metagenomes of the soda-saline lakes and a haloalkaliphilic heterotrophic bacterium Halomonas salifodinae IM328 (=CGMCC 22183) was isolated from the same habitat as the host for expression of a representative sequence. The genetic manipulation was successfully achieved through the conjugation transformation method, and sulfide: quinone oxidoreductase gene (sqr) was expressed via pBBR1MCS derivative plasmid. Furthermore, a whole-cell catalyst system was developed by using the engineered strain that exhibited a higher rate of sulfide oxidation under the optimal alkaline pH of 9.0. The whole-cell catalyst could be recycled six times to maintain the sulfide oxidation rates from 41.451 to 80.216 µmol·min⁻¹·g⁻¹ dry cell mass. To summarize, a whole-cell catalyst system based on the engineered haloalkaliphilic bacterium is potentiated to be applied in the sulfide treatment at a reduced cost.

Sulphate-reducing bacterial community structure from produced water of the Periquito and Galo de Campina onshore oilfields in Brazil

Sulphate-reducing bacteria (SRB) cause fouling, souring, corrosion and produce H2S during oil and gas production. Produced water obtained from Periquito (PQO) and Galo de Campina (GC) onshore oilfields in Brazil was investigated for SRB. Produced water with Postgate B, Postgate C and Baars media was incubated anaerobically for 20 days. DNA was extracted, 16S rDNA PCR amplified and fragments were sequenced using Illumina TruSeq. 4.2 million sequence reads were analysed and deposited at NCBI SAR accession number SRP149784. No significant differences in microbial community composition could be attributed to the different media but significant differences in the SRB were observed between the two oil fields. The dominant bacterial orders detected from both oilfields were Desulfovibrionales, Pseudomonadales and Enterobacteriales. The genus Pseudomonas was found predominantly in the GC oilfield and Pleomorphominas and Shewanella were features of the PQO oilfield. 11% and 7.6% of the sequences at GC and PQO were not classified at the genus level but could be partially identified at the order level. Relative abundances changed for Desulfovibrio from 29.8% at PQO to 16.1% at GC. Clostridium varied from 2.8% at PQO and 2.4% at GC. These data provide the first description of SRB from onshore produced water in Brazil and reinforce the importance of Desulfovibrionales, Pseudomonadales, and Enterobacteriales in produced water globally. Identifying potentially harmful microbes is an important first step in developing microbial solutions that prevent their proliferation.

Water condition in biotrickling filtration for the efficient removal of gaseous contaminants

Biofiltration (BF) facilitates the removal of organic and inorganic compounds through microbial reactions. Water is one of the most important elements in biotrickling filters that provides moisture and nutrients to microbial biofilms. The maintenance of proper trickle watering is very critical in biotrickling filtration because the flow rate of the trickling water significantly influences contaminant removal, and its optimal control is associated with various physicochemical and biological mechanisms. The lack of water leads to the drying of the media, creating several issues, including the restricted absorption of hydrophilic contaminants and the inhibition of microbial activities, which ultimately deteriorates the overall contaminant removal efficiency (RE). Conversely, an excess of water limits the mass transfer of oxygen or hydrophobic gases. In-depth analysis is required to elucidate the role of trickle water in the overall performance of biotrickling filters. The processes involved in the treatment of various polluted gases under specific water conditions have been summarized in this study. Recent microscopic studies on biofilms were reviewed to explain the process by which water stress influences the biological mechanisms involved in the treatment of hydrophobic contaminated gases. In order to maintain an effective mass transfer, hydrodynamic and biofilm conditions, a coherent understanding of water stress and the development of extracellular polymeric substances (EPS) in biofilms is necessary. Future studies on the realistic local distribution of hydrodynamic patterns (trickle flow, water film thickness, and wet efficiency), integrated with biofilm distributions, should be conducted with respect to EPS development.

Comparative metabolic modeling of multiple sulfate-reducing prokaryotes reveals versatile energy conservation mechanisms

Sulfate-reducing prokaryotes (SRPs) are crucial participants in the cycling of sulfur, carbon, and various metals in the natural environment and in engineered systems. Despite recent advances in genetics and molecular biology bringing a huge amount of information about the energy metabolism of SRPs, little effort has been made to link this important information with their biotechnological studies. This study aims to construct multiple metabolic models of SRPs that systematically compile genomic, genetic, biochemical, and molecular information about SRPs to study their energy metabolism. Pan-genome analysis was conducted to compare the genomes of SRPs, from which a list of orthologous genes related to central and energy metabolism was obtained. Twenty-four SRP metabolic models via the inference of pan-genome analysis were efficiently constructed. The metabolic model of the well-studied model SRP Desulfovibrio vulgaris Hildenborough (DvH) was validated via flux balance analysis (FBA). The DvH model predictions matched reported experimental growth and energy yields, which demonstrated that the core metabolic model worked successfully. Further, steady-state simulation of SRP metabolic models under different growth conditions showed how the use of different electron transfer pathways leads to energy generation. Three energy conservation mechanisms were identified, including menaquinone-based redox loop, hydrogen cycling, and proton pumping. Flavin-based electron bifurcation (FBEB) was also demonstrated to be an essential mechanism for supporting energy conservation. The developed models can be easily extended to other species of SRPs not examined in this study. More importantly, the present work develops an accurate and efficient approach for constructing metabolic models of multiple organisms, which can be applied to other critical microbes in environmental and industrial systems, thereby enabling the quantitative prediction of their metabolic behaviors to benefit relevant applications.