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Borsodi AK, Megyes M, Zsigmond T, Horel Á. Soil bacterial communities affected by land-use types in a small catchment area of the Balaton Uplands (Hungary). Biol Futur 2024:10.1007/s42977-024-00233-3. [PMID: 39066977 DOI: 10.1007/s42977-024-00233-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2024] [Accepted: 07/14/2024] [Indexed: 07/30/2024]
Abstract
Changes resulting from different tillage practices can affect the structure of microbial communities, thereby altering soil ecosystems and their functioning. The aim of this study was to explore and compare the physical, chemical properties and bacterial community composition of soils from different land use types (forest, grassland, vineyard, and arable field) in a small catchment. 16S rRNA gene-based amplicon sequencing was used to reveal the taxonomic diversity of summer and autumn soil samples taken from two different slope positions. The greater the anthropogenic impact was on the type of land use, the greater the change was in soil physical and chemical parameters. All sample types were dominated by the phyla Pseudomonadota, Acidobacteriota, Actinobacteriota, Bacteroidota and Verrucomicrobiota. Differences in the relative abundance of various bacterial taxa reflected the different land use types, the seasonality, and the topography. These diversity changes were consistent with the differences in soil properties.
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Affiliation(s)
- Andrea K Borsodi
- Department of Microbiology, Institute of Biology, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/C, Budapest, 1117, Hungary.
- HUN-REN Centre for Ecological Research, Institute of Aquatic Ecology, Karolina út 29, Budapest, 1113, Hungary.
| | - Melinda Megyes
- Department of Microbiology, Institute of Biology, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/C, Budapest, 1117, Hungary
- Doctoral School of Environmental Sciences, ELTE Eötvös Loránd University, Egyetem tér 1-3, Budapest, 1053, Hungary
| | - Tibor Zsigmond
- HUN-REN Centre for Agricultural Research, Institute for Soil Sciences, Ruszti út 2-4, Budapest, 1022, Hungary
- Doctoral School of Environmental Sciences, ELTE Eötvös Loránd University, Egyetem tér 1-3, Budapest, 1053, Hungary
- HUN-REN Centre for Agricultural Research, National Laboratory for Water Science and Water Security, Institute for Soil Sciences, Ruszti út 2-4, Budapest, 1022, Hungary
| | - Ágota Horel
- HUN-REN Centre for Agricultural Research, Institute for Soil Sciences, Ruszti út 2-4, Budapest, 1022, Hungary
- HUN-REN Centre for Agricultural Research, National Laboratory for Water Science and Water Security, Institute for Soil Sciences, Ruszti út 2-4, Budapest, 1022, Hungary
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2
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Shahid M, Ahmed W, Khan AB, Shams ZI, Arif A. Identification of bacterial community in a rapid composting method using 16SrDNA genes sequencing. Biodegradation 2024; 35:361-370. [PMID: 37987937 DOI: 10.1007/s10532-023-10056-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Accepted: 09/21/2023] [Indexed: 11/22/2023]
Abstract
Composting is a process of microbial degradation of organic waste and is commonly applied for waste management. This is a slow process and requires a lot of land and human resources. The present study investigated mechanical augmentation with required microbial culture for composting municipal solid waste (MSW). Thirty isolates were subjected to 16S rDNA PCR amplification and gene sequencing. The isolates' sequencing from the compost samples was processed on BLASTn. Fourteen strains were identified for further experiments. The results divulge that Empedobacter (04), Bacillus (02), Proteus (02), Lactiplantibacillus (01), Klebsiella (01), Citrobacter (01), Brevibacillus (01), E. coli (01) and one unidentified strain were growing during composting. Eleven combinations of bacterial consortium and respective additives were applied for the organic waste decomposition in the next stage, resulting in varied completion periods ranging from 3 to 14 days. Two combinations were completed within 3 days, which are considered ideal combinations for composting. The microbial consortium was significantly diverse, which is a reason for rapid biodegradation. The present study reveals that the technology will be highly feasible for municipal solid waste management in tropical/subtropical countries.
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Affiliation(s)
- Muhammad Shahid
- Institute of Environmental Studies, University of Karachi, Karachi, 75270, Pakistan
| | - Waqar Ahmed
- Institute of Environmental Studies, University of Karachi, Karachi, 75270, Pakistan.
| | | | - Zafar Iqbal Shams
- Institute of Environmental Studies, University of Karachi, Karachi, 75270, Pakistan
| | - Afsheen Arif
- The Karachi Institute of Biotechnology and Genetic Engineering [KIBGE], University of Karachi, Karachi, Pakistan
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3
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Zhu L, Li W, Huang C, Tian Y, Xi B. Functional redundancy is the key mechanism used by microorganisms for nitrogen and sulfur metabolism during manure composting. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:169389. [PMID: 38104842 DOI: 10.1016/j.scitotenv.2023.169389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 12/10/2023] [Accepted: 12/12/2023] [Indexed: 12/19/2023]
Abstract
The microbial ecological functions associated with the nitrogen and sulfur cycles during composting have not been thoroughly elucidated. Using metagenomic sequencing, the microbial mechanisms underlying the nitrogen and sulfur metabolism during livestock and poultry manure composting were investigated in this study. The findings demonstrate that functional redundancy among microorganisms is a crucial factor for the nitrogen and sulfur cycling during livestock and poultry manure composting. Processes such as organic sulfur synthesis, assimilatory sulfate reduction, ammonia assimilation, and denitrification were found to be prevalent. Additionally, there was a certain degree of conservation in nitrogen and sulfur conversion functions among microorganisms at the phylum level. All high-quality metagenomic assembly genomes (MAGs) possessed carbon fixation potential, with 86.3 % of MAGs containing both nitrogen and sulfur conversion genes. Except for bin30, other MAGs encoding sulfur oxidation enzymes were found to be associated with at least one denitrification gene. This suggests a potential interplay between nitrogen and sulfur metabolism among microorganisms. 45, 19, 1, 31, 1, and 2 MAGs could completely regulate organic sulfur synthesis, assimilatory sulfate reduction, thiosulfate oxidation to sulfate, glutamine synthase-glutamate synthase pathway (GS-GOGAT), denitrification, and dissimilatory nitrate reduction, respectively by encoding the required enzymes. TN and pH were the key factors driving the functional redundancy in nitrogen and sulfur microbial community.
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Affiliation(s)
- Lin Zhu
- State Environmental Protection Key Laboratory of Ecological Effect and Risk Assessment of Chemicals, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Wei Li
- State Environmental Protection Key Laboratory of Ecological Effect and Risk Assessment of Chemicals, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Caihong Huang
- State Environmental Protection Key Laboratory of Ecological Effect and Risk Assessment of Chemicals, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China.
| | - Yu Tian
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Beidou Xi
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
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4
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Adamczewska-Sowińska K, Sowiński J, Jamroz E, Bekier J. The effect of peat replacement in horticulture media by willow ( Salix viminalis L.) biomass compost for cucumber transplant production. FRONTIERS IN PLANT SCIENCE 2024; 15:1348073. [PMID: 38410732 PMCID: PMC10895287 DOI: 10.3389/fpls.2024.1348073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Accepted: 01/15/2024] [Indexed: 02/28/2024]
Abstract
This research evaluated the usefulness of horticultural substrates prepared on the basis of compost from chipped willow without additives and with the addition of nitrogen and decomposing mycelium of the cellulose-lignin fraction of wood in the cultivation of cucumber seedlings. The produced composts were mixed in different proportions: mixture 1 (W1) - the proportion of compost without additives and compost prepared with the addition of nitrogen and mycelium was in the ratio of 50:50, mixture 2 (W2) - the proportion of compost without additives and compost prepared with the addition of nitrogen and mycelium was in the ratio of 75:25. The starting mixtures were used to prepare horticultural substrates with different components (peat - P, vermicompost - V) and additives: basaltmeal - B, biochar from deciduous wood - C. The components were added in varying proportions. A total of 29 different substrates were subsequently tested in the study. Plant showed that the traits assessed varied to a greater extent under the effect of the test factors than at earlier growth stages. It was demonstrated that cucumber grown on substrates with 75% or 50% willow compost had a unit weight at the same statistical level as when grown on peat substrate (P). The plants with the highest unit weight (8.5- 10.4 g), belonged to the same homogeneous group and derived from sites W1P1B2, W2P1, W1P1B1, W2P2, W1P1C1, P, W1P1, W2B1, W2P2B2. High-quality cucumber transplant should characterise well develop, optimal height-to-stem thickness ratio, short hypocotyl, thick green leaves and cotyledons.
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Affiliation(s)
| | - Józef Sowiński
- Institute of Agroecology and Plant Production, Wroclaw University of Environmental and Life Sciences, Wroclaw, Poland
| | - Elżbieta Jamroz
- Institute of Soil Sciences Plant Nutrition and Environmental Protection, Wroclaw University of Environmental and Life Sciences, Wrocław, Poland
| | - Jakub Bekier
- Institute of Soil Sciences Plant Nutrition and Environmental Protection, Wroclaw University of Environmental and Life Sciences, Wrocław, Poland
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Wang CQ, Yao B, Wei JA, Gao XY, Zhang DY, Pan XL. Mechanisms for enhanced lignin humification with reduced organic matter loss by goethite in biogas residue composting. BIORESOURCE TECHNOLOGY 2023; 389:129795. [PMID: 37783240 DOI: 10.1016/j.biortech.2023.129795] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2023] [Revised: 08/29/2023] [Accepted: 09/18/2023] [Indexed: 10/04/2023]
Abstract
In this study, effects of three iron (oxyhydr)oxides on the biogas residue composting, i.e., composting with goethite (CFe1), hematite (CFe2) or magnetite (CFe3), were investigated. Results showed that composting performance of CFe1 was much better than those of CFe2 and CFe3. Addition of goethite increased temperature of CFe1 and enhanced lignin humification. More than 31.49% of Fe(III) in goethite was reduced to amorphous Fe(II) during the composting, suggesting that goethite worked as electron acceptor for microbial metabolism and heat generation. The functional bacteria Chloroflexi and Actinobacteria, and genes encoding key enzymes (AA1 family), which play essential roles in humification of lignin, were enriched in CFe1. Besides, goethite reduced 10.96% organic matter (OM) loss probably by increasing the molecular size and aggregation of OM for its protection during the composting. This study shows that adding goethite is an efficient strategy to enhancing the humification of lignin-rich biowaste.
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Affiliation(s)
- Cai-Qin Wang
- College of Environment, Zhejiang University of Technology, Hangzhou 310014, China; Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, Hangzhou 310014, China; Mizuda Group Co. LTD, Huzhou 313000, China
| | - Bing Yao
- College of Environment, Zhejiang University of Technology, Hangzhou 310014, China; Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, Hangzhou 310014, China
| | - Ji-An Wei
- Mizuda Group Co. LTD, Huzhou 313000, China
| | - Xin-Yi Gao
- Mizuda Group Co. LTD, Huzhou 313000, China
| | - Dao-Yong Zhang
- College of Environment, Zhejiang University of Technology, Hangzhou 310014, China; Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, Hangzhou 310014, China.
| | - Xiang-Liang Pan
- College of Environment, Zhejiang University of Technology, Hangzhou 310014, China; Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, Hangzhou 310014, China
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6
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Chen X, Zou Y, Li Q, Wu C, Zhou P, Chen Z, Shi J, Zhao Z. Effect of Thermophilic Microbial Agents on Crude Fiber Content, Carbohydrate-Active Enzyme Genes, and Microbial Communities during Chinese Medicine Residue Composting. ACS OMEGA 2023; 8:39570-39582. [PMID: 37901486 PMCID: PMC10600912 DOI: 10.1021/acsomega.3c05442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Accepted: 09/06/2023] [Indexed: 10/31/2023]
Abstract
The objective of this study was to investigate the impact of thermophilic bacteria on crude fiber content, carbohydrate-active enzyme (CAZyme) genes, and associated microbial communities during Chinese medicine residues composting. The study examines changes over 15 days of composting with (T) and without (CK) thermophilic microbial agents. Results show that the group T compost temperature reached a maximum of 71.0 °C and remained above 70 °C for 2 days, while the group CK maximum temperature was only 60.9 °C. On Day 15, the seed germination index (GI) of group T reached 98.7%, while the group CK GI was only 56.7%. After composting, the degradation rates of cellulose, hemicellulose, and lignin in group T increased by 5.1, 22.5, and 18.5%, respectively, compared to those in group CK. Thermophilic microbial agents changed the microbial communities related to CAZymes, increasing unclassified_o_Myxococcales and Sphaerobacter abundance and reducing Acinetobacter and Sphingobacterium abundance. Thermophilic microbial agents also increased the abundance of the GT4, GT2_Glycos_transf_2, and AA3 gene families. These results show that thermophilic microbial agents can increase composting temperature, accelerate compost maturation, and promote crude fiber degradation. Therefore, they have broad application potential.
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Affiliation(s)
- Xiaojia Chen
- Laboratory
of Biorefinery, Shanghai Advanced Research
Institute, Chinese Academy of Sciences, Shanghai 201210, China
- School
of Life Science and Technology, ShanghaiTech
University, Shanghai 201210, China
- University
of Chinese Academy of Sciences, Beijing 100049, China
| | - Yijun Zou
- Laboratory
of Biorefinery, Shanghai Advanced Research
Institute, Chinese Academy of Sciences, Shanghai 201210, China
- University
of Chinese Academy of Sciences, Beijing 100049, China
| | - Qinyu Li
- Laboratory
of Biorefinery, Shanghai Advanced Research
Institute, Chinese Academy of Sciences, Shanghai 201210, China
- School
of Life Science and Technology, ShanghaiTech
University, Shanghai 201210, China
- University
of Chinese Academy of Sciences, Beijing 100049, China
| | - Chengjian Wu
- Fuzhou
Kaijie Foodstuff Development Co., Ltd., Fuzhou 350003, China
| | - Peng Zhou
- School
of Health Science and Engineering, University
of Shanghai for Science and Technology, Shanghai 200093, China
| | - Zheng Chen
- School
of Health Science and Engineering, University
of Shanghai for Science and Technology, Shanghai 200093, China
| | - Jiping Shi
- Laboratory
of Biorefinery, Shanghai Advanced Research
Institute, Chinese Academy of Sciences, Shanghai 201210, China
- School
of Life Science and Technology, ShanghaiTech
University, Shanghai 201210, China
- University
of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhijun Zhao
- Laboratory
of Biorefinery, Shanghai Advanced Research
Institute, Chinese Academy of Sciences, Shanghai 201210, China
- University
of Chinese Academy of Sciences, Beijing 100049, China
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7
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Zhang Z, Duan C, Liu Y, Li A, Hu X, Chen J, Zhang S, Li X, Che R, Li S, Ekelund F, Cui X. Green waste and sewage sludge feeding ratio alters co-composting performance: Emphasis on the role of bacterial community during humification. BIORESOURCE TECHNOLOGY 2023; 380:129014. [PMID: 37028527 DOI: 10.1016/j.biortech.2023.129014] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 03/29/2023] [Accepted: 04/02/2023] [Indexed: 05/14/2023]
Abstract
Composting with five levels of green waste and sewage sludge was compared to examine how feeding ratios affected composting performance with special focus on humification, and the underlying mechanisms. The results showed that the raw material ratio persistently affected compost nutrients and stability. Humification and mineralization were promoted by higher proportion of sewage sludge. Bacterial community composition and within-community relationships were also significantly affected by the raw material feeding ratio. Network analysis indicated that clusters 1 and 4 which dominated by Bacteroidetes, Proteobacteria, and Acidobacteria shown significantly positive correlation with humic acid concentration. Notably, the structural equational model and variance partitioning analysis demonstrated that bacterial community structure (explained 47.82% of the variation) mediated the effect of raw material feeding ratio on humification, and exceeded the effect of environmental factors (explained 19.30% of the variation) on humic acid formation. Accordingly, optimizing the composting raw material improves the composting performance.
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Affiliation(s)
- Zejin Zhang
- School of Ecology and Environmental Science & Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, Yunnan University, Kunming 650091, China; Sino-Danish College, University of Chinese Academy of Sciences, Beijing 100190, China; College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China; Department of Biology, University of Copenhagen, Copenhagen Ø DK-2100, Denmark
| | - Changqun Duan
- School of Ecology and Environmental Science & Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, Yunnan University, Kunming 650091, China
| | - Yuxian Liu
- Yuxi Experimental Senior High School, Yuxi 653100, China
| | - Anning Li
- School of Ecology and Environmental Science & Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, Yunnan University, Kunming 650091, China
| | - Xi Hu
- School of Ecology and Environmental Science & Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, Yunnan University, Kunming 650091, China
| | - Jingkun Chen
- Institute of International Rivers and Eco-security, Yunnan University, Kunming 650091, China
| | - Song Zhang
- Institute of International Rivers and Eco-security, Yunnan University, Kunming 650091, China
| | - Xin Li
- School of Ecology and Environmental Science & Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, Yunnan University, Kunming 650091, China; Sino-Danish College, University of Chinese Academy of Sciences, Beijing 100190, China
| | - Rongxiao Che
- Institute of International Rivers and Eco-security, Yunnan University, Kunming 650091, China
| | - Shiyu Li
- School of Ecology and Environmental Science & Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, Yunnan University, Kunming 650091, China.
| | - Flemming Ekelund
- Sino-Danish College, University of Chinese Academy of Sciences, Beijing 100190, China; Department of Biology, University of Copenhagen, Copenhagen Ø DK-2100, Denmark
| | - Xiaoyong Cui
- Sino-Danish College, University of Chinese Academy of Sciences, Beijing 100190, China; College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
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Yang X, Li R, Li Y, Mazarji M, Wang J, Zhang X, Song D, Wang Y, Zhang Z, Yang Y, Pan J. Composting pig manure with nano-zero-valent iron amendment: Insights into the carbon cycle and balance. BIORESOURCE TECHNOLOGY 2023; 371:128615. [PMID: 36640823 DOI: 10.1016/j.biortech.2023.128615] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2022] [Revised: 01/08/2023] [Accepted: 01/09/2023] [Indexed: 06/17/2023]
Abstract
The effectiveness of nano-zero-valent-iron (NZVI) addition during composting of pig manure (PM) was investigated. Different dosages of NZVI were mixed with PM substrate during a 50 days composting process. The results revealed that the higher share of NZVI addition, the higher OM degradation rate is. On contrary, it was observed that the higher share of NZVI addition, the lower the fulvic acid and the humin degradation rate is. Meanwhile, NZVI amendment increased the CO2 and CH4 emissions by 29-47 % and 53-57 %, respectively. The in-depth analysis showed that NZVI addition increased the activity of Sphaerobacter and Luteimonas, which eventually led to the degradation of hard-to-degrade OM faster. Additionally, NZVI was found to increase the filtration of microorganisms, reducing the toxicity and hygiene of compost products. No significant improvement in humic substance enhancement was observed during composting with NZVI addition but improved OM degradation.
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Affiliation(s)
- Xu Yang
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
| | - Ronghua Li
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
| | - You Li
- Key Laboratory of Land Surface Pattern and Simulation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China
| | - Mahmoud Mazarji
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Jingwen Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
| | - Xiu Zhang
- North Minzu University Ningxia Key Laboratory for the Development and Application of Microbial Resources in Extreme Environments, Yinchuan 750021, China
| | - Dan Song
- Chongqing Academy of Ecology and Environmental Sciences, Chongqing 401147, China
| | - Yajing Wang
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Zengqiang Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
| | - Yadong Yang
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Junting Pan
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
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Sowiński J, Jama-Rodzeńska A, Perera PCD, Jamroz E, Bekier J. The changes of willow biomass characteristics during the composting process and their phytotoxicity effect on Sinapis alba L. PLoS One 2022; 17:e0275268. [PMID: 36191025 PMCID: PMC9529140 DOI: 10.1371/journal.pone.0275268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Accepted: 09/13/2022] [Indexed: 11/05/2022] Open
Abstract
This study evaluated in 2019–2021 the use of willow chips for compost production and its effect on Sinapis alba L. germination index and seedling growth. Peatlands and peat are of very important economic but above all environmental significance. The conservation of peatland resources is one of the most crucial future challenges. Composts and other forms of lignin-cellulosic biomass are potentially the best renewable alternative to peat in its economic use. Composted lignin-cellulosic biomass can replace peat and be used as a substrate for vegetable transplant production. The impact of modifying the willow lignin-cellulosic biomass composting process has not been well analysed. A compost experiment with willow biomass was conducted to study its effect on selected compost indexes (particle size structure in %, bulk density (kg m-3), and total nitrogen content). The quality assessment of the willow composts was determined after six months of composting process based on the N content and morphological characteristics of tested plant in vegetative chamber. Sinapis alba L. was germinated on a water extract made from willow compost using the following additives to willow biomasses: W0—without additives, WN—with the addition of nitrogen, WF—with the addition of mycelium, WNF—with the addition of nitrogen and mycelium. During the composting process, samples were taken after each mixing of the biomass pile to assess their maturity through the use of a bioassay. Willow biomass did not have a negative effect on biological evaluation parameters, and in some indicators, such as the length of embryonic roots in the VI period of the measurements, it was stimulating (61–84% longer in W0 and WF than in the control). The addition of nitrogen during the composting process, especially in the initial composting period, had a strong inhibitory effect.
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Affiliation(s)
- Józef Sowiński
- Institute of Agroecology and Plant Production, Wroclaw University of Environmental and Life Sciences, Wrocław, Poland
- * E-mail:
| | - Anna Jama-Rodzeńska
- Institute of Agroecology and Plant Production, Wroclaw University of Environmental and Life Sciences, Wrocław, Poland
| | - Peliyagodage Chathura Dineth Perera
- Institute of Agroecology and Plant Production, Wroclaw University of Environmental and Life Sciences, Wrocław, Poland
- Faculty of Agriculture, Department of Agricultural Biology, University of Ruhuna, Mapalana, Kamburupitiya, Sri Lanka
| | - Elżbieta Jamroz
- Institute of Soil Sciences Plant Nutrition and Environmental Protection, Wroclaw University of Environmental and Life Sciences, Wrocław, Poland
| | - Jakub Bekier
- Institute of Soil Sciences Plant Nutrition and Environmental Protection, Wroclaw University of Environmental and Life Sciences, Wrocław, Poland
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10
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Zhao M, Liu D, Zhou J, Wei Z, Wang Y, Zhang X. Ammonium stress promotes the conversion to organic nitrogen and reduces nitrogen loss based on restructuring of bacterial communities during sludge composting. BIORESOURCE TECHNOLOGY 2022; 360:127547. [PMID: 35777648 DOI: 10.1016/j.biortech.2022.127547] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Revised: 06/24/2022] [Accepted: 06/26/2022] [Indexed: 06/15/2023]
Abstract
This study aimed to clarify the conversion relationship between organic and inorganic nitrogen. The NH4Cl was used to enhance the inorganic nitrogen content. The key role of bacterial conversion of ammonium to organic nitrogen under ammonium stress was explored. Studies had shown that ammonium stress increased the amide nitrogen and bioavailable nitrogen content by 36.95% and 32.25%, respectively. Network and regression analyses showed that the microbial community structure was restructured by high ammonium and more bacteria were involved in the conversion of inorganic nitrogen to organic nitrogen(i.e., amide nitrogen, unknown nitrogen). Variation partition analysis and structural equation model showed that the bacterial community was the main contributor to organic nitrogen production(up to 67.4%), which reduced the nitrogen loss by 6.03%. These findings shed light on the poorly understood interaction between inorganic and organic nitrogen by clarifying the role of core bacterial communities in nitrogen conversion.
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Affiliation(s)
- Meiyang Zhao
- College of Life Science, Northeast Agricultural University, Harbin 150030, China
| | - Dan Liu
- College of Life Science, Northeast Agricultural University, Harbin 150030, China
| | - Jin Zhou
- College of Life Science, Northeast Agricultural University, Harbin 150030, China
| | - Zimin Wei
- College of Life Science, Northeast Agricultural University, Harbin 150030, China.
| | - Yumeng Wang
- College of Life Science, Northeast Agricultural University, Harbin 150030, China
| | - Xinlin Zhang
- College of Life Science, Northeast Agricultural University, Harbin 150030, China
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11
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Wang H, Shankar V, Jiang X. Compositional and Functional Changes in Microbial Communities of Composts Due to the Composting-Related Factors and the Presence of Listeria monocytogenes. Microbiol Spectr 2022; 10:e0184521. [PMID: 35703536 PMCID: PMC9430276 DOI: 10.1128/spectrum.01845-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Accepted: 03/19/2022] [Indexed: 11/20/2022] Open
Abstract
Listeria monocytogenes is a leading foodborne pathogen that can contaminate fresh produce in farm environment, resulting in deadly outbreaks. Composts contain a diversity of microorganisms, and some of them may be compost-adapted competitive exclusion microorganisms against L. monocytogenes. To understand interactions between compost microflora and the pathogen, both dairy- and poultry-wastes based composts (n = 12) were inoculated with L. monocytogenes, and then analyzed by next-generation sequencing approaches along with culturing methods. DNA extraction and enumeration of L. monocytogenes were performed at 0 and 72 h post-incubation at room temperature. The major bacterial phyla were identified as Firmicutes (23%), Proteobacteria (23%), Actinobacteria (19%), Chloroflexi (13%), Bacteroidetes (12%), Gemmatimonadetes (2%), and Acidobacteria (2%). The top three indicator genera enriched in different compost types were identified by LEfSe with LDA score > 2. The interactions between L. monocytogenes and indigenous microflora were limited as no significant changes in the dominant microbial members in compost ecosystem, but some discriminatory species such as Bacillus, Geobacillus, and Brevibacterium were identified by Random Forest analysis. Besides, changes in metabolic pathways and the increased abundance of bacteriocins category in the compost samples containing L. monocytogenes after 72 h postinoculation were revealed by metatranscriptomic sequencing. Taken together, the compost-related factors such as compost types, composting stages, and the collection farms are major drivers that affect compost microbial compositions, and the analysis of compost metagenome implied that interactions between L. monocytogenes and compost microflora may include competition for nutrients and the presence of antimicrobials. IMPORTANCE Listeria monocytogenes has been recognized as the etiological agent causing foodborne disease outbreaks, with fresh produce as vulnerable for contamination at even preharvest stage. Owing to the richness in microbial community, compost may mediate suppression of pathogens. In this study, the impact of compost-related factors and L. monocytogenes intrusion on dynamic changes in compost microbiome was investigated by next generation sequencing techniques. The compost-related factors such as compost types, composting stages, and the collection farms are major drivers that affect compost microbiome. The interactions between L. monocytogenes and compost microflora may include the competition for nutrients and the presence of antimicrobials produced by native compost microorganisms as potential competitive exclusion microorganisms. Findings from this study are important for the composting industry to understand the composition and functionality of microbial community in their products and help developing organic fertilizers fortified with anti-L. monocytogenes competitive exclusion microorganisms.
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Affiliation(s)
- Hongye Wang
- Department of Food, Nutrition, and Packaging Sciences, Clemson University, Clemson, South Carolina, USA
| | - Vijay Shankar
- Center for Human Genetics, Clemson University, Greenwood, South Carolina, USA
| | - Xiuping Jiang
- Department of Food, Nutrition, and Packaging Sciences, Clemson University, Clemson, South Carolina, USA
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12
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Lu J, Yuan M, Hu L, Yao H. Migration and Transformation of Multiple Heavy Metals in the Soil–Plant System of E-Waste Dismantling Site. Microorganisms 2022; 10:microorganisms10040725. [PMID: 35456776 PMCID: PMC9030041 DOI: 10.3390/microorganisms10040725] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 03/23/2022] [Accepted: 03/24/2022] [Indexed: 11/16/2022] Open
Abstract
E-waste generation has become a major environmental issue worldwide. Heavy metals (HMs) in e-waste can be released during inappropriate recycling processes. While their pollution characteristics have been studied, the migration and transformation of different multi-metal fractions in soil–plant system of e-waste dismantling sites is still unclear. In this study, pot experiments were conducted to investigate the migration and transformation of different multi-metal fractions (Cu, Pb, Zn and Al) in the soil–plant system using two Chinese cabbage cultivars (heavy metals low-accumulated variety of Z1 and non-low-accumulated Z2) treated with or without biochar. The result showed that the acid-soluble fraction of Cu, Pb, Zn and Al in soil decreased by 5.5%, 55.7%, 7.8% and 21.3%, but the residual fraction (ResF) of them increased by 48.5%, 1.8%, 30.9% and 43.1%, respectively, when treated with biochar and plants, compared to that of the blank soil (CK). In addition, Pb mainly existed as a reducible fraction, whereas Cu existed as an oxidisable fraction. Biochar combined with plants significantly increased the ResF of multi-metals, which reduced the migration ability of Pb among all other metals. The relative amount of labelled 13C in the soil of Z1 was higher than that of Z2 (25.4 fold); among them, the Gram-negative bacteria (18-1ω9c, 18-1ω7c) and fungi (18-2ω6c) were significantly labelled in the Z1-treated soil, and have high correlation with HM migration and transformation. In addition, Gemmatimonadete were significantly positive in the acid-soluble fraction of HMs, whereas Ascomycota mostly contributed to the immobilisation of HMs. Therefore, the distribution of fractions rather than the heavy metal type plays an important role in the HM migration in the soil–plant system of e-waste dismantling sites.
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Affiliation(s)
- Jianming Lu
- Key Laboratory of Green Chemical Engineering Process of Ministry of Education, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430073, China;
| | - Ming Yuan
- Key Laboratory of Green Chemical Engineering Process of Ministry of Education, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430073, China;
- Correspondence: (M.Y.); (H.Y.)
| | - Lanfang Hu
- Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, Ningbo Urban Environment Observation and Research Station, Chinese Academy of Sciences, Ningbo 315800, China;
| | - Huaiying Yao
- Key Laboratory of Green Chemical Engineering Process of Ministry of Education, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430073, China;
- Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, Ningbo Urban Environment Observation and Research Station, Chinese Academy of Sciences, Ningbo 315800, China;
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
- Correspondence: (M.Y.); (H.Y.)
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13
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Yang Y, Li G, Min K, Liu T, Li C, Xu J, Hu F, Li H. The potential role of fertilizer-derived exogenous bacteria on soil bacterial community assemblage and network formation. CHEMOSPHERE 2022; 287:132338. [PMID: 34563774 DOI: 10.1016/j.chemosphere.2021.132338] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Revised: 09/19/2021] [Accepted: 09/22/2021] [Indexed: 06/13/2023]
Abstract
Manure fertilization contributes to crop production and sustainable agriculture by introducing large amounts of nutrients and exogenous microbes into soil. However, the contribution of exogenous microbes in shaping soil bacterial community and network structure after fertilization are still controversial. In this study, bacterial communities and network structure that received unsterilized (R + C) or sterilized (R + SC) manure fertilizers, as well as no fertilizer control (R), were characterized using high throughput sequencing. Results showed that the relative abundance of fertilizer-derived OTUs decreased from 10.4% to 4.6% after 90 days incubation, while the Bray-Curtis distance between the control and fertilization group (R + C and R + SC) gradually increased with the culture time. It can be supposed that manure fertilization altered soil bacterial communities by interfering the growth of indigenous bacteria rather than the colonization of fertilizer-derived bacteria. Network analysis showed that a subset of the fertilizer-derived OTUs identified as Xanthomonadales order and Promicromonospora, Constrictibacter genera acted as connectors between modules. They enhanced the interactions not only between soil-derived OTUs and fertilizer-derived OTUs, but also within indigenous bacteria, supported that the introduction of fertilizer-derived exogenous bacteria contributes large to soil bacterial network association. Moreover, fertilizer-derived OTUs presented to be positively correlated with soil pH, while majority soil-derived OTUs presented to be negatively correlated with various physicochemical variables (pH, DOC, NO3-, and LAP). Our study highlighted the critical role of fertilizer-derived bacteria in regulating indigenous soil microbial community and network formation after fertilization.
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Affiliation(s)
- Yang Yang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Gen Li
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Kaikai Min
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Ting Liu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Chunkai Li
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Jingjing Xu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Feng Hu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Huixin Li
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing, 210095, China.
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14
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Biyada S, Merzouki M, Dėmčėnko T, Vasiliauskienė D, Ivanec-Goranina R, Urbonavičius J, Marčiulaitienė E, Vasarevičius S, Benlemlih M. Microbial community dynamics in the mesophilic and thermophilic phases of textile waste composting identified through next-generation sequencing. Sci Rep 2021; 11:23624. [PMID: 34880393 PMCID: PMC8654937 DOI: 10.1038/s41598-021-03191-1] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Accepted: 10/25/2021] [Indexed: 01/04/2023] Open
Abstract
Composting is a promising source of mesophilic and thermophilic microorganisms directly involved in the decay of organic matter. However, there is a paucity of information related to bacterial and fungal diversity in compost and their enzymatic activities during the composting process. In this work, bacterial and fungal diversity during the mesophilic and thermophilic phases of textile waste composting was investigated as a way to explain the physical–chemical results obtained during the composting process. This was accomplished using a next-generation sequencing approach that targets either the 16S rRNA or ITS genomic regions of bacteria and fungi, respectively. It was observed that Proteobacteria, Bacteroidetes, and Actinobacteria were the dominant bacterial phyla present at the mesophilic phase but not at the thermophilic one. Composting textile waste exhibits a sustained thermophilic profile (above 55 °C) that usually precludes fungal activity. Nonetheless, the presence of fungi at the thermophilic phase was observed. Rozellomycota, Basidiomycota, and Ascomycota were the most dominant phyla during both composting phases. Such thermophilic fungi with great ability to decay organic matter could be isolated as pure cultures and used for the bioaugmentation of textile waste composting to achieve an advanced maturity level of textile waste compost.
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Affiliation(s)
- Saloua Biyada
- Laboratory of Biotechnology, Environment, Agrifood, and Health, Faculty of Sciences Dhar El Mahraz, Sidi Mohamed Ben Abdellah University, Atlas, BP: 1796, 30 000, Fez, Morocco.
| | - Mohammed Merzouki
- Laboratory of Biotechnology, Environment, Agrifood, and Health, Faculty of Sciences Dhar El Mahraz, Sidi Mohamed Ben Abdellah University, Atlas, BP: 1796, 30 000, Fez, Morocco
| | - Taisija Dėmčėnko
- Department of Chemistry and Bioengineering, Vilnius Gediminas Technical University, 10223, Vilnius, Lithuania
| | - Dovilė Vasiliauskienė
- Department of Chemistry and Bioengineering, Vilnius Gediminas Technical University, 10223, Vilnius, Lithuania
| | - Rūta Ivanec-Goranina
- Department of Chemistry and Bioengineering, Vilnius Gediminas Technical University, 10223, Vilnius, Lithuania
| | - Jaunius Urbonavičius
- Department of Chemistry and Bioengineering, Vilnius Gediminas Technical University, 10223, Vilnius, Lithuania
| | - Eglė Marčiulaitienė
- Department of Environmental Protection and Water Engineering, Vilnius Gediminas Technical University, 10223, Vilnius, Lithuania
| | - Saulius Vasarevičius
- Department of Environmental Protection and Water Engineering, Vilnius Gediminas Technical University, 10223, Vilnius, Lithuania
| | - Mohamed Benlemlih
- Laboratory of Biotechnology, Environment, Agrifood, and Health, Faculty of Sciences Dhar El Mahraz, Sidi Mohamed Ben Abdellah University, Atlas, BP: 1796, 30 000, Fez, Morocco
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15
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Zhou Y, Awasthi SK, Liu T, Verma S, Zhang Z, Pandey A, Varjani S, Li R, Taherzadeh MJ, Awasthi MK. Patterns of heavy metal resistant bacterial community succession influenced by biochar amendment during poultry manure composting. JOURNAL OF HAZARDOUS MATERIALS 2021; 420:126562. [PMID: 34252662 DOI: 10.1016/j.jhazmat.2021.126562] [Citation(s) in RCA: 45] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Revised: 06/12/2021] [Accepted: 07/01/2021] [Indexed: 06/13/2023]
Abstract
The purpose of this study was to investigate the heavy metal resistant bacteria (HMRB) community succession and bacterial activity in poultry manure (PM) composting. Five different concentration of chicken manure biochar (CMB) at 0%, 2%, 4%, 6%, and 10% on a dry weight basis was applied with initial feedstock (poultry manure + wheat straw) and indicated with T1, T2, T3, T4, and T5. In addition, high-throughput sequencing, principal coordinate analysis, and correlation analysis were used to analyze the evolution of HMRB communities during composting. The study indicated that crucial phyla were Proteobacteria, Actinobacteria, Bacteroidetes, and Firmicutes. The bacterial diversity in the CMB amendment treatment was higher than in the control treatment, and T4 treatment has the highest among all CMB applied treatments. Moreover, results from CCA indicated that T4 and T5 treatments quickly enters the high-temperature period which is maintained for 5 days, and is significantly positively correlated with Proteobacteria, and Actinobacteria. These findings offer insight into potential strategies to understand the succession of HMRBs during PM reuse. Overall, the above results show the addition of 6% biochar (T4) was potentially beneficial to enrich the abundance of bacterial community to improve composting environment quality and composting efficiency. In addition, effective to immobilized the heavy metals and HMRB in the end product.
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Affiliation(s)
- Yuwen Zhou
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China
| | - Sanjeev Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China
| | - Tao Liu
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China
| | - Shivpal Verma
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China
| | - Zengqiang Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China
| | - Ashok Pandey
- Centre for Innovation and Translational Research, CSIR-Indian Institute of Toxicology Research, Lucknow 226 001, India
| | - Sunita Varjani
- Gujarat Pollution Control Board, Gandhinagar 382010, Gujarat, India
| | - Ronghua Li
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China
| | | | - Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China; Swedish Centre for Resource Recovery, University of Borås, Borås 50190, Sweden.
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16
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Planifilum fulgidum Is the Dominant Functional Microorganism in Compost Containing Spent Mushroom Substrate. SUSTAINABILITY 2021. [DOI: 10.3390/su131810002] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
The extensive accumulation of spent mushroom substrate (SMS) owing to the large-scale production of edible fungi is causing environmental problems that cannot be ignored. Co-composting is a promising method for agricultural and animal husbandry waste disposal. In this study, the composition and function of microbial communities in the process of cattle manure–maize straw composting with SMS addition were compared through an integrated meta-omics approach. The results showed that irrespective of SMS addition, the predominant fungi were Ascomycota, while the dominant bacteria were Firmicutes, Proteobacteria, Actinobacteria, and Bacteroidetes. High temperature promoted the evolution from Gram-negative bacteria (Bacteroides, Proteobacteria) to Gram-positive bacteria (Firmicutes, Actinomycetes). The composting process was accelerated by SMS addition, and the substrate was effectively degraded in 14 days. Metaproteomics results showed that the dominant microorganism, Planifilum fulgidum, secreted large amounts of S8, M17, and M32 proteases that could degrade macromolecular protein substrates in the presence of SMS. Planifilum fulgidum, along with Thermobifida fusca and Melanocarpus albomyces, synergistically degraded hemicellulose, cellulose, and protein. In addition, the dominant microorganisms related to the initial raw materials such as Pichia, Lactobacillus in the microbial agent and Hypsizygus in SMS could not adapt to the high-temperature environment (>60 °C) and were replaced by thermophilic bacteria after 5 days of composting.
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17
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Wang Y, Nie M, Diwu Z, Chang F, Nie H, Zhang B, Bai X, Yin Q. Toxicity evaluation of the metabolites derived from the degradation of phenanthrene by one of a soil ubiquitous PAHs-degrading strain Rhodococcus qingshengii FF. JOURNAL OF HAZARDOUS MATERIALS 2021; 415:125657. [PMID: 34088178 DOI: 10.1016/j.jhazmat.2021.125657] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Revised: 03/10/2021] [Accepted: 03/11/2021] [Indexed: 06/12/2023]
Abstract
Rhodococcus qingshengii strain FF is a soil ubiquitous strain that has a high polycyclic aromatic hydrocarbons (PAHs) biodegradation capability. In this work, phenanthrene was used as a PAH model compound. The accumulated pattern of the metabolites of phenanthrene by strain FF was investigated, and their toxicity to Vibrio fischeri, effect on microbiota diversity of farmland soil and influence on seed of wheat were evaluated. Total of 29 main intermediates were observed for the phenanthrene degradation process. Pyrogallol was the predominant accumulated metabolite, and 59% of the accumulated metabolites were oxygen-containing PAHs that have only one benzene ring. The acute toxicity assessment showed the accumulated metabolites in later phase were more toxic to Vibrio fischeri. Microbe and wheat seed response to the different stages of phenanthrene metabolites indicated pollution significantly decreased microbial richness and evenness of farmland soil and lower germinal length, root length or root number of wheat seed. These results indicated that not only the elimination of PAHs, but also the easily accumulated metabolites produced during the PAHs degradation process should be paid enough attention. The comprehensive evaluation of toxicity during the degradation process would provide useful information for the use of microbe-orientated strategies in PAHs bioremediation.
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Affiliation(s)
- Yan Wang
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, No. 13 Yanta Road, Xi'an 710055, China; Microbiology Institute of Shaanxi, No. 76 Xiying Road, Xi'an 710043, China.
| | - Maiqian Nie
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, No. 13 Yanta Road, Xi'an 710055, China; Research Institute of Membrane Separation Technology of Shaanxi Province, No. 13 Yanta Road, Xi'an 710055, China.
| | - Zhenjun Diwu
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, No. 13 Yanta Road, Xi'an 710055, China; Research Institute of Membrane Separation Technology of Shaanxi Province, No. 13 Yanta Road, Xi'an 710055, China.
| | - Fan Chang
- Microbiology Institute of Shaanxi, No. 76 Xiying Road, Xi'an 710043, China.
| | - Hongyun Nie
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, No. 13 Yanta Road, Xi'an 710055, China; Research Institute of Membrane Separation Technology of Shaanxi Province, No. 13 Yanta Road, Xi'an 710055, China.
| | - Bo Zhang
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, No. 13 Yanta Road, Xi'an 710055, China; Research Institute of Membrane Separation Technology of Shaanxi Province, No. 13 Yanta Road, Xi'an 710055, China.
| | - Xuerui Bai
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, No. 13 Yanta Road, Xi'an 710055, China; Research Institute of Membrane Separation Technology of Shaanxi Province, No. 13 Yanta Road, Xi'an 710055, China.
| | - Qiuyue Yin
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, No. 13 Yanta Road, Xi'an 710055, China; Research Institute of Membrane Separation Technology of Shaanxi Province, No. 13 Yanta Road, Xi'an 710055, China.
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18
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Olive Mill and Olive Pomace Evaporation Pond’s By-Products: Toxic Level Determination and Role of Indigenous Microbiota in Toxicity Alleviation. APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app11115131] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Diverse vegetable oils are extracted from oleagenic trees and plants all over the world. In particular, olive oil represents a strategic socio-economic branch in the Mediterranean countries. These countries use either two or three-phase olive oil extraction systems. In this work, we focus on the by-products from three-phase olive oil extraction, which are the liquid olive mill wastewater (OMW) and the solid olive mill pomace (OMP) rejected in evaporative ponds. The disposal of this recalcitrant waste poses environmental problems such as the death of different species of insects and animals. In-depth ICP-OES analysis of the heavy metal composition of OMW and OMP revealed the presence of many metals ranging from non-toxic to highly toxic. The LC-HRMS characterization of these by-products indicated the presence of several secondary metabolites harmful to humans or to the environment. Thus, we aimed to identify OMW and OMP indigenous microbiota through metagenomics. The bacterial population was dominated by the Acetobacter (49.7%), Gluconobacter (17.3%), Gortzia (13.7%) and Nardonalla (5.3%) genera. The most abundant fungal genera were Nakazawaea, Saccharomyces, Lachancea and Candida. These microbial genera are responsible for OMW, OMP and soil toxicity alleviation.
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19
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Qiao C, Penton CR, Liu C, Tao C, Deng X, Ou Y, Liu H, Li R. Patterns of fungal community succession triggered by C/N ratios during composting. JOURNAL OF HAZARDOUS MATERIALS 2021; 401:123344. [PMID: 32652420 DOI: 10.1016/j.jhazmat.2020.123344] [Citation(s) in RCA: 45] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2020] [Revised: 06/15/2020] [Accepted: 06/28/2020] [Indexed: 06/11/2023]
Abstract
Accumulating evidence indicates that the functional rather than taxonomic composition of microbial communities is closely correlated to local environmental factors. While composting is a widely accepted practice, specific knowledge of how fungal functional groups interact during the composting process remains limited. To address this, the impact of the initial C/N ratio of composting material on fungal community was analyzed in order to reveal the succession of functional diversity. Compared with the raw materials, the final composting product significantly reduced the relative abundances of plant and animal pathogens. Abundances of plant and animal pathogens, as well as dung saprotrophs, were negatively correlated with compost maturity, while abundances of wood saprotrophs exhibited positive correlations. Specific OTUs that showing highly abundant in each treatment were expected to compete for environmental preferences (niches) and/or interact with each other in positive (facilitative) ways. OTU2 (wood saprotroph) exhibiting the highest occurrence was negatively related to OTU7 (animal pathogen) and OTU4 (plant pathogen) during the mesophilic phase. Taken together, high-efficiency composting is represented as pattern variations of fungal community with a process of gradual decline of plant and animal pathogens as well as dung saprotrophs.
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Affiliation(s)
- Cece Qiao
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, PR China; Department of Environmental Science and Engineering, Anhui Science and Technology University, Donghua Road 9#, Fengyang, 233100, PR China; College of Integrative Sciences and Arts, Arizona State University, Mesa, AZ, USA
| | - C Ryan Penton
- College of Integrative Sciences and Arts, Arizona State University, Mesa, AZ, USA; Center for Fundamental and Applied Microbiomics, The Biodesign Institute, Arizona State University, Tempe, AZ, USA
| | - Chao Liu
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, PR China
| | - Chengyuan Tao
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, PR China
| | - Xuhui Deng
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, PR China
| | - Yannan Ou
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, PR China
| | - Hongjun Liu
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, PR China.
| | - Rong Li
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, PR China.
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Abstract
Over the last decade, food waste has been one of the major issues globally as it brings a negative impact on the environment and health. Rotting discharges methane, causing greenhouse effect and adverse health effects due to pathogenic microorganisms or toxic leachates that reach agricultural land and water system. As a solution, composting is implemented to manage and reduce food waste in line with global sustainable development goals (SDGs). This review compiles input on the types of organic composting, its characteristics, physico-chemical properties involved, role of microbes and tools available in determining the microbial community structure. Composting types: vermi-composting, windrow composting, aerated static pile composting and in-vessel composting are discussed. The diversity of microorganisms in each of the three stages in composting is highlighted and the techniques used to determine the microbial community structure during composting such as biochemical identification, polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE), terminal restriction fragment length polymorphism (T-RFLP) and single strand-conformation polymorphism (SSCP), microarray analysis and next-generation sequencing (NGS) are discussed. Overall, a good compost, not only reduces waste issues, but also contributes substantially to the economic and social sectors of a nation.
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21
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Bello A, Han Y, Zhu H, Deng L, Yang W, Meng Q, Sun Y, Egbeagu UU, Sheng S, Wu X, Jiang X, Xu X. Microbial community composition, co-occurrence network pattern and nitrogen transformation genera response to biochar addition in cattle manure-maize straw composting. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 721:137759. [PMID: 32172117 DOI: 10.1016/j.scitotenv.2020.137759] [Citation(s) in RCA: 108] [Impact Index Per Article: 27.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2020] [Revised: 03/04/2020] [Accepted: 03/04/2020] [Indexed: 06/10/2023]
Abstract
A better understanding of the microbial group influencing nitrogen (N) dynamics and cycling in composting matrix is critical in achieving good management to alleviate N loss and improve final compost quality. This study investigated the bacterial composition, structure, co-occurrence network patterns and topological roles of N transformation in cattle manure-maize straw composting using high-throughput sequencing. The two treatments used in this experiment were cattle manure and maize straw mixture (CM) and CM with 10% biochar addition (CMB). In both treatments, the bacterial community composition varied during composting and the major phyla included Actinobacteria, Firmicutes, Proteobacteria, Bacteroidetes and Chloroflexi. The phyla Actinobacteria and Proteobacteria were more abundant in CMB treatment while Firmicutes was abundant in CM piles. The metabolic functional profiles of bacteria was predicted using the "phylogenetic investigation of communities by reconstruction of unobserved states" (PICRUSt) which revealed that except for cellular processes pathway, CMB had slight higher abundance in metabolism, genetic information processing and environmental information processing than the CM. Pearson correlation revealed more significant relationship between the important bacteria communities and N transformation in CMB piles compared with CM. Furthermore, network pattern analysis revealed that the bacterial networks in biochar amended piles are more complex and harbored more positive links than that of no biochar piles. Corresponding agreement of multivariate analyses (correlation heatmap, stepwise regression, Path and network analyses) revealed that Psychrobacter, Thermopolyspora and Thermobifida in CM while Corynebacterium_1, Thermomonospora and Streptomyces in CMB were key bacterial genera affecting NH4+-N, NO3--N and total nitrogen (TN) transformation respectively during composting process. These results provide insight into nitrogen transformation and co-occurrence patterns mediating microbes and bacterial metabolism which could be useful in enhancing compost quality and mitigating N loss during composting.
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Affiliation(s)
- Ayodeji Bello
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Yue Han
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Haifeng Zhu
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Liting Deng
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Wei Yang
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Qingxin Meng
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Yu Sun
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Ugochi Uzoamaka Egbeagu
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Siyuan Sheng
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Xiaotong Wu
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Xin Jiang
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Xiuhong Xu
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, China.
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Liu T, Awasthi SK, Duan Y, Zhang Z, Awasthi MK. Effect of fine coal gasification slag on improvement of bacterial diversity community during the pig manure composting. BIORESOURCE TECHNOLOGY 2020; 304:123024. [PMID: 32086035 DOI: 10.1016/j.biortech.2020.123024] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2019] [Revised: 02/11/2020] [Accepted: 02/12/2020] [Indexed: 06/10/2023]
Abstract
In present study, evaluate the effect of fine coal gasification slag (FCGS) as additive on abundance of bacterial diversity during pig manure composting. The six different dosages of FCGS 0% (T1), 2% (T2), 4% (T3), 6% (T4), 8% (T5) and 10% (T6) (dry weight basis) were mixed with original raw materials for 42 days an aerobic composting. The results indicated that FCGS adopted could affect the succession of bacterial diversity in different ways. Among all treatments, Firmicutes, Proteobacteria, Tenericutes, unidentified_Bacteria, and Actinobacteria were the highest abundance in weighted unifrac distance but Firmicutes; Proteobacteria, Actinobacteria, Bacteroidetes, and Spirochaetes were main bacteria in unweighted unifrac distance. The β-diversity and principal component analysis indicated a significant difference in bacterial diversity in all treatments which T4 obtained difference obviously. Therefore, the results showed that T4 was a potential candidate to enhance significantly abundance of bacterial community in PM compost.
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Affiliation(s)
- Tao Liu
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China
| | - Sanjeev Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China
| | - Yumin Duan
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China
| | - Zengqiang Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China
| | - Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China.
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Liang J, Tang S, Gong J, Zeng G, Tang W, Song B, Zhang P, Yang Z, Luo Y. Responses of enzymatic activity and microbial communities to biochar/compost amendment in sulfamethoxazole polluted wetland soil. JOURNAL OF HAZARDOUS MATERIALS 2020; 385:121533. [PMID: 31757720 DOI: 10.1016/j.jhazmat.2019.121533] [Citation(s) in RCA: 92] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2019] [Revised: 10/22/2019] [Accepted: 10/23/2019] [Indexed: 05/22/2023]
Abstract
Biochar and compost, two common amendments, were rarely conducted to investigate their combined influence on enzymatic activities and microbial communities in organic-polluted wetlands. This article described the effects of biochar/compost on degradation efficiency of sulfamethoxazole (SMX) and ecosystem responses in polluted wetland soil during the whole remediation process. 1% biochar (SB1) increased degradation efficiency of SMX by 0.067% ascribed to the increase of dehydrogenase and urease. 5% biochar (SB5) decreased degradation efficiency by 0.206% due to the decrease of enzymes especially for dehydrogenase. 2% compost (SC2), 1% biochar & 2% compost (SBC3), both 10% compost (SC10) and 5% biochar & 10% compost (SBC15) enhanced degradation efficiency by 0.033%, 0.015% and 0.222%, respectively, due to the increase of enzymes and biomass. The degradation efficiency was positively related to biomass and enzymatic activities. High-throughput sequencing demonstrated that HCGs (SB5, SC10, SBC15) improved the bacterial diversities but reduced richness through introducing more exogenous predominance strains and annihilated several inferior strains, while LCGs (SB1, SC2, SBC3) exhibited lower diversities but higher richness through enhanced the RAs of autochthonal preponderant species and maintained some inferior species. Additionally, HCGs raised the RAs of amino and lipid metabolism gene but lowered those of carbohydrate compared with LCGs.
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Affiliation(s)
- Jie Liang
- College of Environmental Science and Engineering, Hunan University, Changsha, 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha, 410082, PR China.
| | - Siqun Tang
- College of Environmental Science and Engineering, Hunan University, Changsha, 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha, 410082, PR China
| | - Jilai Gong
- College of Environmental Science and Engineering, Hunan University, Changsha, 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha, 410082, PR China.
| | - Guangming Zeng
- College of Environmental Science and Engineering, Hunan University, Changsha, 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha, 410082, PR China
| | - Wangwang Tang
- College of Environmental Science and Engineering, Hunan University, Changsha, 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha, 410082, PR China
| | - Biao Song
- College of Environmental Science and Engineering, Hunan University, Changsha, 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha, 410082, PR China
| | - Peng Zhang
- College of Environmental Science and Engineering, Hunan University, Changsha, 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha, 410082, PR China
| | - Zhaoxue Yang
- College of Environmental Science and Engineering, Hunan University, Changsha, 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha, 410082, PR China
| | - Yuan Luo
- College of Environmental Science and Engineering, Hunan University, Changsha, 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha, 410082, PR China
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Li J, Xing W, Bao H, Wang J, Tong X, Zhang H, Luo W, Wu F. Impact of pine leaf biochar amendment on bacterial dynamics and correlation of environmental factors during pig manure composting. BIORESOURCE TECHNOLOGY 2019; 293:122031. [PMID: 31476566 DOI: 10.1016/j.biortech.2019.122031] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Revised: 08/14/2019] [Accepted: 08/16/2019] [Indexed: 06/10/2023]
Abstract
The influence of pine leaf biochar (PLB) amendment on bacterial community succession and its correlation with physic-chemical parameters during pig manure (PM) composting was evaluated. The five different dosages of PLB [at 0% (T1), 2.5% (T2), 5% (T3), 10% (T4) and 15% (T5)] mixed with initial composting mass were conducted to composting for 50 days. The present study indicated that bacterial diversity was significantly (p < 0.05) higher in PLB amended treatments than the control, but T4 treatment showed the highest among the all PLB applied treatment. Firmicutes, Actinobacteria, Proteobacteria and Bacteroidete were four most abundant phyla of all the treatments. Furthermore, redundancy analysis showed that the bacterial community were significantly (p < 0.05) positively correlated with temperature, pH, TOC, CO2 and NH3 emissions, while they were negatively correlated with the N2O and CH4 emission. Overall, the results suggested that the addition of 10% PLB (T4 treatment) was a potential option to enhance the composting efficiency with significantly greater abundance of bacterial community and finally improved the compost quality.
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Affiliation(s)
- Jiao Li
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling 712100, Shaanxi, China
| | - Wenjing Xing
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling 712100, Shaanxi, China
| | - Huanyu Bao
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling 712100, Shaanxi, China
| | - Jinfeng Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling 712100, Shaanxi, China
| | - Xiaogang Tong
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - He Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling 712100, Shaanxi, China
| | - Wanqing Luo
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling 712100, Shaanxi, China
| | - Fuyong Wu
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling 712100, Shaanxi, China.
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25
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Mao H, Zhang H, Fu Q, Zhong M, Li R, Zhai B, Wang Z, Zhou L. Effects of four additives in pig manure composting on greenhouse gas emission reduction and bacterial community change. BIORESOURCE TECHNOLOGY 2019; 292:121896. [PMID: 31404757 DOI: 10.1016/j.biortech.2019.121896] [Citation(s) in RCA: 58] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Revised: 07/22/2019] [Accepted: 07/23/2019] [Indexed: 06/10/2023]
Abstract
Four different additives of Medical stone (MS), Zeolite (ZL), Bamboo biochar (BC), and Wood vinegar (WV) were investigated in pig manure composting. The four additives reduced the peak CH4 emission from 54% to 74%, while reduced N2O loss from 36% to 69%, compared with control (CK). WV and ZL showed better ability in N2O loss reduction, yet MS with the efficient inhibition both on CH4 and NH3 emissions. The bacterial community analysis indicated that bacterial diversity in the maturity phase was higher than that in the thermophilic phase, especially with treatments of ZL, BC and WV. The selected factors of pH, temperature, TOC and DOC could influence the thermophilic phase, while EC and TKN related closely with maturity phase in pig manure composting.
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Affiliation(s)
- Hui Mao
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi 712100, China
| | - Haoyue Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Qian Fu
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Minzheng Zhong
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Ronghua Li
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi 712100, China
| | - Bingnian Zhai
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi 712100, China
| | - Zhaohui Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi 712100, China
| | - Lina Zhou
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China.
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26
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Wang J, Liu Z, Xia J, Chen Y. Effect of microbial inoculation on physicochemical properties and bacterial community structure of citrus peel composting. BIORESOURCE TECHNOLOGY 2019; 291:121843. [PMID: 31357046 DOI: 10.1016/j.biortech.2019.121843] [Citation(s) in RCA: 87] [Impact Index Per Article: 17.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Revised: 07/15/2019] [Accepted: 07/17/2019] [Indexed: 06/10/2023]
Abstract
In this study, microorganisms were inoculated during citrus peel composting for citrus waste recycling and valorisation. The physicochemical properties and the bacterial community structure of citrus peel composting inoculated microorganism were studied. The thermophilic stage of pilot-scale composting (T2) was 20 days longer than lab-scale composting (T1). C/N, organic matter, moisture, pectin and cellulose content decreased along with composing process, but the pH, soluble protein and total nutrient showed an opposite trend. The inoculation improved the richness and diversity of the bacterial community and the diversity index reached maximum on 21 days. As composting progress, Bacillus, Sphingobacterium and Saccharomonospora in inoculum became the dominant genus. Redundancy analysis showed that C/N, pectin degradation rate and temperature could explain 30.1%, 24.9% and 15.6% of the variation in bacterial genera, respectively.
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Affiliation(s)
- Jiaqin Wang
- School of Environment and Ecology, Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Chongqing University, Chongqing 400045, China
| | - Zhiping Liu
- School of Environment and Ecology, Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Chongqing University, Chongqing 400045, China.
| | - Jiashuai Xia
- School of Environment and Ecology, Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Chongqing University, Chongqing 400045, China
| | - Youpeng Chen
- School of Environment and Ecology, Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Chongqing University, Chongqing 400045, China
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27
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Fang Y, Jia X, Chen L, Lin C, Zhang H, Chen J. Effect of thermotolerant bacterial inoculation on the microbial community during sludge composting. Can J Microbiol 2019; 65:750-761. [DOI: 10.1139/cjm-2019-0107] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
A thermophilic bacterium (Geobacillus stearothermophilus CHB1) was inoculated in a sludge compost, and the effects of the inoculation on the abundance and structure of the bacterial community in the sludge compost were investigated using quantitative PCR and Illumina MiSeq sequencing. The results showed that the high-temperature stage (>50 °C) of the CHB1 and CK (control without inoculum) piles started on days 5 and 8, respectively, and lasted for 7 and 2 days, respectively, indicating the extension of the thermophilic phase by CHB1 inoculation in the sludge compost. At the end of composting, the CHB1 piles showed a higher loss of total organic carbon, lower C/N ratio, and lower moisture content. The abundance of bacteria in the CHB1 piles was significantly higher in the heating and thermophilic phase of composting but were lower than those of the CK in the cooling phase. The richness and diversity of the bacterial community in the thermophilic phase increased after inoculation with CHB1. After inoculation of CHB1, there were higher relative abundances of Firmicutes, Thermopolyspora, Thermobacillus, Thermomonas, Thermomonospora, and Thermovum, which can grow in a high-temperature environment. Furthermore, redundancy analysis indicated that total organic carbon, total nitrogen, C/N ratio, pH, temperature, and moisture were the significant parameters that affected the bacterial community structure during sludge composting. Our findings suggested that inoculation with CHB1 would enhance the quality and efficiency of composting.
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Affiliation(s)
- Yu Fang
- Institute of Soil and Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
- Institute of Soil and Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
| | - Xianbo Jia
- Institute of Soil and Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
- Institute of Soil and Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
| | - Longjun Chen
- Institute of Soil and Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
- Institute of Soil and Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
| | - Chenqiang Lin
- Institute of Soil and Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
- Institute of Soil and Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
| | - Hui Zhang
- Institute of Soil and Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
- Institute of Soil and Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
| | - Jichen Chen
- Institute of Soil and Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
- Institute of Soil and Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
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28
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Qiao C, Ryan Penton C, Liu C, Shen Z, Ou Y, Liu Z, Xu X, Li R, Shen Q. Key extracellular enzymes triggered high-efficiency composting associated with bacterial community succession. BIORESOURCE TECHNOLOGY 2019; 288:121576. [PMID: 31176934 DOI: 10.1016/j.biortech.2019.121576] [Citation(s) in RCA: 51] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Revised: 05/25/2019] [Accepted: 05/27/2019] [Indexed: 05/22/2023]
Abstract
A consortium of key bacterial taxa plays critical roles in the composting process. In order to elucidate the identity and mechanisms by which specific bacterial species drive high-efficiency composting, the succession of key bacterial consortia and extracellular enzymes produced during the composting process were monitored in composting piles with varying initial C/N ratios. Results showed that C/N ratios of 25 and 35 enhanced composting efficiency through elevated temperatures, higher germination indices, enhanced cellulose and hemicellulose degradation, and higher cellulase and dehydrogenase activities. The activities of cellulase and β-glucosidase, cellulase and protease, and cellulase and β-glucosidase exhibited significant relationships with bacterial community composition within the mesophilic, thermophilic, and mature phases, respectively. Putative key taxa, linked to a higher composting efficiency, such as Nonomuraea, Desemzia, Cellulosimicrobium, Virgibacillus, Clostridium, and Achromobacter, exhibited significantly positive relationships with extracellular enzyme activities, suggesting a significant contribution to these taxa to the development of composting maturity.
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Affiliation(s)
- Cece Qiao
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, PR China; College of Integrative Sciences and Arts, Center for Fundamental and Applied Microbiomics, The Biodesign Institute, Arizona State University, Mesa, AZ, USA
| | - C Ryan Penton
- College of Integrative Sciences and Arts, Center for Fundamental and Applied Microbiomics, The Biodesign Institute, Arizona State University, Mesa, AZ, USA
| | - Chao Liu
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, PR China
| | - Zongzhuan Shen
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, PR China
| | - Yannan Ou
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, PR China
| | - Zhengyang Liu
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, PR China
| | - Xu Xu
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, PR China
| | - Rong Li
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, PR China.
| | - Qirong Shen
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, PR China
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Yang Y, Awasthi MK, Ren X, Guo H, Lv J. Effect of bean dregs on nitrogen transformation and bacterial dynamics during pig manure composting. BIORESOURCE TECHNOLOGY 2019; 288:121430. [PMID: 31176946 DOI: 10.1016/j.biortech.2019.121430] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2019] [Revised: 05/03/2019] [Accepted: 05/04/2019] [Indexed: 06/09/2023]
Abstract
This work studied the nitrogen transformation and bacterial dynamics in the co-composting of bean dregs (BD) and pig manure (PM). Four treatments were performed with BD at 0% (CK), 5%, 10% and 15% (w/w dry basis of PM) amended for 49-days aerobic compost. Results revealed that the temperature, NH4+-N and pH of end product all met the maturity requirement. The BD-amendment increased nitrogen losses (8.55%-55.92%) during composting compared to CK. However, this amendment also enhanced total nitrogen content (TKN) of end products (1.86%-12%). The highest content of TKN was in 10%BD-amended treatment with relatively lower nitrogen loss compared to 15%BD. Furthermore, the results of 16S rDNA showed that BD-amended changed the bacterial community composition compared with CK. Especially, 10%BD-amended was the optimum in promoting the diversity and abundance of bacteria. Additionally, Firmicutes, Actinobacteria, Proteobacteria, Bacteroidetes and Chloroflexi were dominant phyla and Bacilli was dominant class in BD-amended compost.
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Affiliation(s)
- Yajun Yang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, PR China
| | - Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China
| | - Xiuna Ren
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China
| | - Honghong Guo
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, PR China
| | - Jialong Lv
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, PR China.
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30
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Meng Q, Xu X, Zhang W, Men M, Xu B, Deng L, Bello A, Jiang X, Sheng S, Wu X. Bacterial community succession in dairy manure composting with a static composting technique. Can J Microbiol 2019; 65:436-449. [DOI: 10.1139/cjm-2018-0560] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Qingxin Meng
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
| | - Xiuhong Xu
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
| | - Wenhao Zhang
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
| | - Mengqi Men
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
| | - Benshu Xu
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
| | - Liting Deng
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
| | - Ayodeji Bello
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
| | - Xin Jiang
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
| | - Siyuan Sheng
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
| | - Xiaotong Wu
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
- College of Resources and Environment, Northeast Agricultural University, Harbin 150030, P.R. China
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Vitulo N, Lemos WJF, Calgaro M, Confalone M, Felis GE, Zapparoli G, Nardi T. Bark and Grape Microbiome of Vitis vinifera: Influence of Geographic Patterns and Agronomic Management on Bacterial Diversity. Front Microbiol 2019; 9:3203. [PMID: 30671035 PMCID: PMC6331396 DOI: 10.3389/fmicb.2018.03203] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2018] [Accepted: 12/11/2018] [Indexed: 12/30/2022] Open
Abstract
In recent years, the concept of “microbial terroir” has been introduced in the frame of the more renowned notion of “vitivinicultural terroir,’ since several studies demonstrated that wine characteristics are related to regional microbial community compositions. Most of the existing research focused on grape berries microbiota, since it can directly impact wine quality. In this work we studied, for the first time through next-generation sequencing, the epiphytic bacterial community of vine bark and its relationships with grape microbiota. The study was carried out in two Italian wine appellations (situated in different regions) to explore the impact of biogeography, and the influence of two agronomical practices (biodynamic and conventional) was evaluated as well. Overall, our results show that grapevine bark harbors a rich epiphytic microbiota and displays a higher microbial biodiversity than grape berry. Moreover, this study suggests that geographic and anthropogenic factors impact both bark and grape bacteriomes, but to a different extent. The evidence of a “microbial terroir” seems to be even more marked in bark than in berries, possibly due to its permanence over time and to its physical proximity with soil. The importance of vine trunk bark, as potential source of inoculum for grapes and as interesting bacterial diversity habitat, is evidenced. This opens new fields of investigation, not only for researchers that aim at describing this little-known habitat within the vineyard, but also for stakeholders from the wine industry that want to understand the roles of microorganisms on the entire winemaking process, from vineyard to cellar.
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Affiliation(s)
- Nicola Vitulo
- Department of Biotechnology, University of Verona, Verona, Italy
| | | | - Matteo Calgaro
- Department of Biotechnology, University of Verona, Verona, Italy
| | - Marco Confalone
- Department of Biotechnology, University of Verona, Verona, Italy
| | - Giovanna E Felis
- Department of Biotechnology, University of Verona, Verona, Italy
| | | | - Tiziana Nardi
- Research Centre for Viticulture and Enology, Council for Agricultural Research and Economics-CREA, Conegliano, Italy
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32
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Paz Narváez IE, Menjivar Flores JC. Efecto del compost en la diversidad de bacterias rizosféricas del cultivo de morera (Morus alba). REVISTA COLOMBIANA DE BIOTECNOLOGÍA 2019. [DOI: 10.15446/rev.colomb.biote.v21n1.79971] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
La producción orgánica de seda incluye la aplicación de compost como practica de cultivo en morera (Morus alba), sin embargo, el efecto de la fertilización orgánica en las poblaciones de bacterias rizosféricas no siempre es positivo. Para evaluar el efecto del compost en la diversidad de bacterias rizosféricas en cultivos de morera (Morus alba), se aplicaron 0, 0.25, 0.5 y 1 kg.m-2 de compost a parcelas con morera dispuestas en un diseño en bloques completos al azar. De cada parcela se extrajo ADN del suelo rizosférico a los 0, 5, 10 y 90 días de aplicado el compost y se amplificó la región V4 del gen ADNr 16S para su secuenciación y asignación taxonómica de los OTUS. Los índices de diversidad alpha mostraron la dominancia de algunos grupos taxonómicos, como los phyla Proteobacteria y Acidobacteria y los géneros Pseudomonas, Opitutus, Luteolibacter y Nitrospir. La diversidad beta indicó similitud entre las muestras influenciadas por la aplicación compost y el incremento de la diversidad en las parcelas muestreadas al final del experimento (90 días). Los grupos taxonómicos dominantes se caracterizan por su función en el ciclo del nitrógeno. Así, se concluyó que la aplicación de 1 kg.m-2 llevó al aumento de la humedad del suelo, el pH y la disponibilidad de nutrientes, lo que incremento la diversidad de bacterias rizosféricas con cambios positivos en composición, riqueza y abundancia en los niveles de orden, familia y género.
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Awasthi MK, Chen H, Wang Q, Liu T, Duan Y, Awasthi SK, Ren X, Tu Z, Li J, Zhao J, Zhang Z. Succession of bacteria diversity in the poultry manure composted mixed with clay: Studies upon its dynamics and associations with physicochemical and gaseous parameters. BIORESOURCE TECHNOLOGY 2018; 267:618-625. [PMID: 30056372 DOI: 10.1016/j.biortech.2018.07.094] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Revised: 07/16/2018] [Accepted: 07/18/2018] [Indexed: 06/08/2023]
Abstract
In this study, the bacterial community succession and variations were investigated in poultry manure (PM) compost by the using high-throughput sequencing in six different concentration of clay [at 0% (T1), 2% (T2), 4% (T3), 6% (T4), 8% (T5) and 10% (T6) on PM dry weight basis] applied compost. The results indicated that dominant phylum were Firmicutes, Proteobacteria, Actinobacteria and Bacteroidetes, while Bacillus, Paenibacillus, Virgibacillus, Oceanobacillus and Clostridium were the dominant genera in all the treatments. Correlation analyses provided useful tools for insight into the bacterial interactions with environmental factors and also extension of the compost maturation and resistance of bacteria. During the course of study, the diversity of bacteria similar but relative abundance variable in each treatments. However, the average and the normalized (to bacterial RAs or copies of sequences) both remained greater in higher dosage of clay applied treatments. Finally, the RAs of various bacterial community composition was affected in PM compost by the clay application.
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Affiliation(s)
- Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Hongyu Chen
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Quan Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Tao Liu
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Yumin Duan
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Sanjeev Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Xiuna Ren
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Zhineng Tu
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Jiao Li
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Junchao Zhao
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Zengqiang Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China.
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Ma S, Fang C, Sun X, Han L, He X, Huang G. Bacterial community succession during pig manure and wheat straw aerobic composting covered with a semi-permeable membrane under slight positive pressure. BIORESOURCE TECHNOLOGY 2018; 259:221-227. [PMID: 29558720 DOI: 10.1016/j.biortech.2018.03.054] [Citation(s) in RCA: 108] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Revised: 03/08/2018] [Accepted: 03/11/2018] [Indexed: 06/08/2023]
Abstract
Bacteria play an important role in organic matter degradation and maturity during aerobic composting. This study analyzed composting with or without a membrane cover in laboratory-scale aerobic composting reactor systems. 16S rRNA gene analysis was used to study the bacterial community succession during composting. The richness of the bacterial community decreased and the diversity increased after covering with a semi-permeable membrane and applying a slight positive pressure. Principal components analysis based on operational taxonomic units could distinguish the main composting phases. Linear Discriminant Analysis Effect Size analysis indicated that covering with a semi-permeable membrane reduced the relative abundance of anaerobic Clostridiales and pathogenic Pseudomonas and increased the abundance of Cellvibrionales. In membrane-covered aerobic composting systems, the relative abundance of some bacteria could be affected, especially anaerobic bacteria. Covering could effectively promote fermentation, reduce emissions and ensure organic fertilizer quality.
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Affiliation(s)
- Shuangshuang Ma
- Laboratory of Biomass and Bioprocessing Engineering, College of Engineering, China Agricultural University, Beijing 100083, China
| | - Chen Fang
- Laboratory of Biomass and Bioprocessing Engineering, College of Engineering, China Agricultural University, Beijing 100083, China
| | - Xiaoxi Sun
- Laboratory of Biomass and Bioprocessing Engineering, College of Engineering, China Agricultural University, Beijing 100083, China
| | - Lujia Han
- Laboratory of Biomass and Bioprocessing Engineering, College of Engineering, China Agricultural University, Beijing 100083, China
| | - Xueqin He
- Laboratory of Biomass and Bioprocessing Engineering, College of Engineering, China Agricultural University, Beijing 100083, China
| | - Guangqun Huang
- Laboratory of Biomass and Bioprocessing Engineering, College of Engineering, China Agricultural University, Beijing 100083, China.
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Liu L, Wang S, Guo X, Zhao T, Zhang B. Succession and diversity of microorganisms and their association with physicochemical properties during green waste thermophilic composting. WASTE MANAGEMENT (NEW YORK, N.Y.) 2018; 73:101-112. [PMID: 29279244 DOI: 10.1016/j.wasman.2017.12.026] [Citation(s) in RCA: 113] [Impact Index Per Article: 18.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Revised: 11/21/2017] [Accepted: 12/20/2017] [Indexed: 06/07/2023]
Abstract
A comprehensive characterization of the bacterial diversity associated to thermophilic stages of green waste composting was achieved. In this study, eight different treatments (T1-T8) and three replicated lab-scale green waste composting were carried out to compare the effect of the cellulase (i.e. 0, 2%), microbial inoculum (i.e. 0, 2 and 4%) and particle size (i.e. 2 and 5 mm) on bacterial community structure. Physicochemical properties and bacterial communities of T1-T8 composts were observed, and the bacterial structure and diversity were examined by high-throughput sequencing via a MiSeq platform. The results showed that the most abundant phyla among the treatments were the Firmicutes, Chloroflexi and Proteobacteria. The shannon index and non-metric multidimensional scaling (NMDS) showed higher bacterial abundance and diversity at the metaphase of composting. Comparing with 5-mm treatments, particle size of 2-mm had a richer diversity of bacterial communities. The addition of cellulase and a microbial inoculum could promote the fermentation temperature, reduce the compost pH and C/N ratio and result in higher GI index. The humic substance (HS) and humic acid (HA) contents for 2-mm particle size treatments were higher than those of 5-mm treatments. Canonical correspondence analysis suggested that differences in bacterial abundance and diversity significantly correlated with HA, E4/E6 and temperature, and the relationship between bacterial diversity and environmental parameters was affected by composting stages. Based on these results, the application of cellulase to promote green waste composting was feasible, and particle size was identified as a potential control of composting physicochemical properties and bacterial diversity.
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Affiliation(s)
- Ling Liu
- College of Soil and Water Conservation, Beijing Forestry University, Beijing 100083, PR China; Key Lab of Soil and Water Conservation and Desertification Combating, Ministry of Education, Beijing Forestry University, Beijing 100083, PR China
| | - Shuqi Wang
- Tianjin LVYIN Landscape and Ecology Construction Co., Ltd, Tianjin 300384, PR China
| | - Xiaoping Guo
- College of Soil and Water Conservation, Beijing Forestry University, Beijing 100083, PR China; Key Lab of Soil and Water Conservation and Desertification Combating, Ministry of Education, Beijing Forestry University, Beijing 100083, PR China.
| | - Tingning Zhao
- College of Soil and Water Conservation, Beijing Forestry University, Beijing 100083, PR China; Key Lab of Soil and Water Conservation and Desertification Combating, Ministry of Education, Beijing Forestry University, Beijing 100083, PR China
| | - Bolin Zhang
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, PR China
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36
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Awasthi MK, Li J, Kumar S, Awasthi SK, Wang Q, Chen H, Wang M, Ren X, Zhang Z. Effects of biochar amendment on bacterial and fungal diversity for co-composting of gelatin industry sludge mixed with organic fraction of municipal solid waste. BIORESOURCE TECHNOLOGY 2017; 246:214-223. [PMID: 28747259 DOI: 10.1016/j.biortech.2017.07.068] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2017] [Revised: 07/11/2017] [Accepted: 07/12/2017] [Indexed: 06/07/2023]
Abstract
The aim of the study was to evaluate the bacterial and fungal diversities of 18contrastivecomposts applied with 17 different sources mad biochars applied treatments using 16S rRNA and 18S rDNA technology, while T-1 used as a control. The results showed that bacterial species of the phyla Actinobacteria, Proteobacteria and Chloroflexi, and fungi of the phylum Ascomycota and Basidiomycota were pre-dominant among the all treatments. The bacterial genus Subgroup_6_norank, Nocardioides, Pseudonocardia, Sphingomonas, Solirubrobacter and RB41_norank are first time identified in composting ecosystem. In addition, the fungal genus Ascomycota_unclassified, Aspergillus, Penicillium, Pleosporales_unclassified and Herpotrichlellacease_unclassified ubiquitous among the all compost. The Shannon and refraction-curve biodiversity indices showed a clear heterogeneity among all the treatments, which could be due to isolation of new genera in this system. Finally, the principal component analysis of the relative number of sequences also confirmed that bacterial and fungal population indiscriminate in different sources mad biochar applied treatments.
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Affiliation(s)
- Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China; Department of Biotechnology, Amicable Knowledge Solution University, Satna, India
| | - Jiao Li
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Sunil Kumar
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Solid and Hazardous Waste Management Division, Nagpur 440 020, Maharashtra, India
| | | | - Quan Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Hongyu Chen
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Meijing Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Xiuna Ren
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Zengqiang Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China.
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Cai L, Krafft T, Chen TB, Lv WZ, Gao D, Zhang HY. New insights into biodrying mechanism associated with tryptophan and tyrosine degradations during sewage sludge biodrying. BIORESOURCE TECHNOLOGY 2017; 244:132-141. [PMID: 28779664 DOI: 10.1016/j.biortech.2017.07.118] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2017] [Revised: 07/17/2017] [Accepted: 07/21/2017] [Indexed: 06/07/2023]
Abstract
Sewage sludge biodrying is a treatment that uses bio-heat generated from organic degradation to remove water from sewage sludge. Dewatering is still limited during biodrying, due to the presence of extracellular polymeric substances (EPS) in sludge. To study the biodrying mechanism associated with EPS compositions tryptophan and tyrosine degradations, this study investigated the microbial function in sludge biodrying material. This study conducted a taxonomic analysis of biodrying material; determined the most abundant genetic functions; analyzed the functional microorganisms involved in the degradations of tryptophan and tyrosine; and summarized the metabolic pathways. The results indicated efficient degradations of tryptophan and tyrosine were observed during the initial thermophilic phase; functional microorganisms were mainly from the phyla Firmicutes, Actinobacteria, and Proteobacteria, enriched with genes involved in amino acid transport and metabolism. These findings highlight the potentially important microorganisms and typical pathways that may help improve dewaterability during biodegradation.
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Affiliation(s)
- Lu Cai
- Faculty of Architectural, Civil Engineering and Environment, Ningbo University, Ningbo 315211, China; Faculty of Health, Medicine and Life Sciences, Maastricht University, Maastricht 6200 MD, The Netherlands.
| | - Thomas Krafft
- Faculty of Health, Medicine and Life Sciences, Maastricht University, Maastricht 6200 MD, The Netherlands
| | - Tong-Bin Chen
- Center for Environmental Remediation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China
| | - Wen-Zhou Lv
- Faculty of Architectural, Civil Engineering and Environment, Ningbo University, Ningbo 315211, China
| | - Ding Gao
- Center for Environmental Remediation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China
| | - Han-Yan Zhang
- Faculty of Architectural, Civil Engineering and Environment, Ningbo University, Ningbo 315211, China
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38
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Galitskaya P, Biktasheva L, Saveliev A, Grigoryeva T, Boulygina E, Selivanovskaya S. Fungal and bacterial successions in the process of co-composting of organic wastes as revealed by 454 pyrosequencing. PLoS One 2017; 12:e0186051. [PMID: 29059245 PMCID: PMC5653195 DOI: 10.1371/journal.pone.0186051] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2017] [Accepted: 09/25/2017] [Indexed: 02/07/2023] Open
Abstract
Composting is viewed as one of the primary methods to treat organic wastes. Co-composting may improve the efficiency of this treatment by establishing the most suitable conditions for decomposers than those present in the individual wastes. Given that bacteria and fungi are the driving agents of composting, information about the composition of their communities and dynamics during composting may improve reproducibility, performance and quality of the final compost as well as help to evaluate the potential human health risk and the choice of the most appropriate application procedure. In this study, the co-composting of mixtures containing two similar components (organic fraction of municipal solid waste and sawdust polluted by oil) and one discriminate component (sewage sludges of different origin) were investigated. Bacterial and fungal community successions in the two mixtures were analyzed during the composting process by determining the change in their structural dynamics using qPCR and 454 pyrosequencing methods in a lab experiment for a period of 270 days. During the initial composting stage, the number of 16S bacterial copies was (3.0±0.2) x 106 and (0.4±0.0) x 107 g-1, and the Rhodospiralles and Lactobacialles orders dominated. Fungal communities had (2.9±0.0) x105 and (6.1±0.2) x105 ITS copies g-1, and the Saccharomycetales order dominated. At the end of the thermophilic stage on the 30th day of composting, bacterial and fungal communities underwent significant changes: dominants changed and their relative abundance decreased. Typical compost residents included Flavobacteriales, Chitinophagaceae and Bacterioidetes for bacteria and Microascaceae, Dothideomycetes, Eurotiomycetes, Sordariomycetes, and Agaricomycetes for fungi. During the later composting stages, the dominating taxa of both bacterial and fungal communities remained, while their relative abundance decreased. In accordance with the change in the dominating OTUs, it was concluded that the dynamics of the bacterial and fungal communities were not similar. Analysis by non-metric multidimensional scaling (NMDS) revealed that the bacterial communities of the two composts became progressively more similar; a similar trend was followed by the fungal community.
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Affiliation(s)
- Polina Galitskaya
- Department of Applied Ecology, Institute of Environmental Sciences, Kazan Federal University, Kazan, Russian Federation
| | - Liliya Biktasheva
- Department of Applied Ecology, Institute of Environmental Sciences, Kazan Federal University, Kazan, Russian Federation
- * E-mail:
| | - Anatoly Saveliev
- Department of Ecological Systems Modeling, Institute of Environmental Sciences, Kazan Federal University, Kazan, Russian Federation
| | - Tatiana Grigoryeva
- Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russian Federation
| | - Eugenia Boulygina
- Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russian Federation
| | - Svetlana Selivanovskaya
- Department of Applied Ecology, Institute of Environmental Sciences, Kazan Federal University, Kazan, Russian Federation
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Tian X, Yang T, He J, Chu Q, Jia X, Huang J. Fungal community and cellulose-degrading genes in the composting process of Chinese medicinal herbal residues. BIORESOURCE TECHNOLOGY 2017; 241:374-383. [PMID: 28578278 DOI: 10.1016/j.biortech.2017.05.116] [Citation(s) in RCA: 69] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2017] [Revised: 05/16/2017] [Accepted: 05/18/2017] [Indexed: 06/07/2023]
Abstract
The fungal community and the population of 16S rRNA, 18S rRNA and cellulose-degrading genes during the 30-day composting process of Chinese medicinal herbal residues were investigated using Illumina MiSeq and quantitative real-time PCR. An obvious succession of fungal communities occurred during the composting process. Unidentified fungi predominated in the raw materials. As composting progressed, Ascomycota became the most dominant phylum, with Aspergillus being the most dominant genus, and Aspergillus fumigatus making up 99.65% of that genus. Because of the inoculation of cellulolytic fungi in the mature stage, the cellulose degradation rate in inoculation groups was faster and the relative abundances of Aspergillus and the glycoside hydrolase family 7 genes were significantly higher than those in the control groups. These indicated that the fungal inoculants facilitated the degradation of cellulose, increased cellulolytic fungi and optimized the community structure.
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Affiliation(s)
- Xueping Tian
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; University of Chinese Academy of Sciences, Beijing 100049, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| | - Tao Yang
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| | - Jingzhong He
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; University of Chinese Academy of Sciences, Beijing 100049, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| | - Qian Chu
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; University of Chinese Academy of Sciences, Beijing 100049, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| | - Xiaojun Jia
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; University of Chinese Academy of Sciences, Beijing 100049, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| | - Jun Huang
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China.
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40
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Awasthi MK, Zhang Z, Wang Q, Shen F, Li R, Li DS, Ren X, Wang M, Chen H, Zhao J. New insight with the effects of biochar amendment on bacterial diversity as indicators of biomarkers support the thermophilic phase during sewage sludge composting. BIORESOURCE TECHNOLOGY 2017; 238:589-601. [PMID: 28482285 DOI: 10.1016/j.biortech.2017.04.100] [Citation(s) in RCA: 116] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2017] [Revised: 04/24/2017] [Accepted: 04/25/2017] [Indexed: 06/07/2023]
Abstract
In this work, the 16S rRNA gene was used to compare the bacterial diversity at thermophilic stage of six different biochar dosage applied SS composting, while compared without biochar added treatment or control. The results showed that biochar amendment affected the structure and succession of bacteria diversity in different ways, and there were 35 prominent genera among all samples displayed in the species abundance heat-map. Among them, Proteobacteria, Firmicutes and Chloroflexi were the main phyla found in genomic libraries from each treatment. The most abundant common genera among the all treatments were Pseudomonas, T78, Acinetobacter and Ureibacillus. In addition, Krona, principal component analysis and β-diversity indices showed a clear difference in bacterial diversity among the biochar added and control treatments. Finally, our results suggested that Planomicrobium, Paracoccus, Agrobacterium and Devosia could be considered as possible biomarkers symbolic of the thermophilic phase during SS composting.
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Affiliation(s)
- Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China; Department of Biotechnology, Amicable Knowledge Solution University, Satna, India
| | - Zengqiang Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China.
| | - Quan Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Feng Shen
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Ronghua Li
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Dong-Sheng Li
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Xiuna Ren
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Meijing Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Hongyu Chen
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Junchao Zhao
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
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Pan Y, Yang X, Xu M, Sun G. The Role of Enriched Microbial Consortium on Iron-Reducing Bioaugmentation in Sediments. Front Microbiol 2017; 8:462. [PMID: 28373869 PMCID: PMC5357831 DOI: 10.3389/fmicb.2017.00462] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2016] [Accepted: 03/06/2017] [Indexed: 11/13/2022] Open
Abstract
Microbial iron reduction is an important biogeochemical process and involved in various engineered processes, including the traditional clay dyeing processes. Bioaugmentation with iron reducing bacteria (IRB) is generally considered as an effective method to enhance the activity of iron reduction. However, limited information is available about the role of IRB on bioaugmentation. To reveal the roles of introduced IRB on bioaugmentation, an IRB consortium enriched with ferric citrate was inoculated into three Fe(II)-poor sediments which served as the pigments for Gambiered Guangdong silk dyeing. After bioaugmentation, the dyeabilities of all sediments met the demands of Gambiered Guangdong silk through increasing the concentration of key agent [precipitated Fe(II)] by 35, 27, and 61%, respectively. The microbial community analysis revealed that it was the minor species but not the dominant ones in the IRB consortium that promoted the activity of iron reduction. Meanwhile, some indigenous bacteria with the potential of iron reduction, such as Clostridium, Anaeromyxobacter, Bacillus, Pseudomonas, Geothrix, and Acinetobacter, were also stimulated to form mutualistic interaction with introduced consortium. Interestingly, the same initial IRB consortium led to the different community successions among the three sediments and there was even no common genus increasing or decreasing synchronously among the potential IRB of all bioaugmented sediments. The Mantel and canonical correspondence analysis showed that different physiochemical properties of sediments influenced the microbial community structures. This study not only provides a novel bioremediation method for obtaining usable sediments for dyeing Gambiered Guangdong silk, but also contributes to understanding the microbial response to IRB bioaugmentation.
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Affiliation(s)
- Yuanyuan Pan
- Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of MicrobiologyGuangzhou, China; School of Bioscience and Bioengineering, South China University of TechnologyGuangzhou, China; State Key Laboratory of Applied Microbiology Southern ChinaGuangzhou, China; Guangdong Open Laboratory of Applied MicrobiologyGuangzhou, China
| | - Xunan Yang
- Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of MicrobiologyGuangzhou, China; State Key Laboratory of Applied Microbiology Southern ChinaGuangzhou, China; Guangdong Open Laboratory of Applied MicrobiologyGuangzhou, China
| | - Meiying Xu
- Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of MicrobiologyGuangzhou, China; State Key Laboratory of Applied Microbiology Southern ChinaGuangzhou, China; Guangdong Open Laboratory of Applied MicrobiologyGuangzhou, China
| | - Guoping Sun
- Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of MicrobiologyGuangzhou, China; State Key Laboratory of Applied Microbiology Southern ChinaGuangzhou, China; Guangdong Open Laboratory of Applied MicrobiologyGuangzhou, China
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Zhu F, Storey S, Ashaari MM, Clipson N, Doyle E. Benzo(a)pyrene degradation and microbial community responses in composted soil. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:5404-5414. [PMID: 28025788 DOI: 10.1007/s11356-016-8251-3] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2016] [Accepted: 12/12/2016] [Indexed: 06/06/2023]
Abstract
Benzo(a)pyrene degradation was compared in soil that was either composted, incubated at a constant temperature of 22 °C, or incubated under a temperature regime typical of a composting process. After 84 days, significantly more (61%) benzo(a)pyrene was removed from composted soil compared to soils incubated at a constant temperature (29%) or at composting temperatures (46%). Molecular fingerprinting approaches indicated that in composted soils, bacterial community changes were driven by both temperature and organic amendment, while fungal community changes were primarily driven by temperature. Next-generation sequencing data revealed that the bacterial community in composted soil was dominated by Actinobacteria (order Actinomycetales), Firmicutes (class Bacilli), and Proteobacteria (classes Gammaproteobacteria and Alphaproteobacteria), regardless of whether benzo(a)pyrene was present or not. The relative abundance of unclassified Actinomycetales (Actinobacteria) was significantly higher in composted soil when degradation was occurring, indicating a potential role for these organisms in benzo(a)pyrene metabolism. This study provides baseline data for employing straw-based composting strategies for the removal of high molecular weight PAHs from soil and contributes to the knowledge of how microbial communities respond to incubation conditions and pollutant degradation.
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Affiliation(s)
- Fengxiao Zhu
- School of Biology and Environmental Science and Earth Institute, University College Dublin, Dublin, Ireland
| | - Sean Storey
- School of Biology and Environmental Science and Earth Institute, University College Dublin, Dublin, Ireland
| | - Mardiana Mohd Ashaari
- Department of Biotechnology, Kulliyah of Science, International Islamic University Malaysia, Kuantan, Malaysia
| | - Nicholas Clipson
- School of Biology and Environmental Science and Earth Institute, University College Dublin, Dublin, Ireland
| | - Evelyn Doyle
- School of Biology and Environmental Science and Earth Institute, University College Dublin, Dublin, Ireland.
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Tortosa G, Castellano-Hinojosa A, Correa-Galeote D, Bedmar EJ. Evolution of bacterial diversity during two-phase olive mill waste ("alperujo") composting by 16S rRNA gene pyrosequencing. BIORESOURCE TECHNOLOGY 2017; 224:101-111. [PMID: 27931940 DOI: 10.1016/j.biortech.2016.11.098] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2016] [Revised: 11/22/2016] [Accepted: 11/23/2016] [Indexed: 06/06/2023]
Abstract
Microorganisms are the main contributing factor responsible for organic matter degradation during composting. In this research, the 454-pyrosequencing of the 16S rRNA gene was used to elucidate evolution of bacterial diversity during mesophilic, thermophilic and maturation composting stages of the two-phase olive mill waste ("alperujo"), the main by-product of the Spanish olive oil industry. Two similar piles were performance composting AL with sheep manure as bulking agent. Actinobacteria, Bacteriodetes, Firmicutes and Proteobacteria were the main phyla found in genomic libraries from each composting phase. Shannon and Chao1 biodiversity indices showed a clear difference between the mesophilic/thermophilic and maturation phases, which was mainly due to detection of new genera. PCA analysis of the relative number of sequences confirmed maturation affected bacterial population structure, and Pearson correlation coefficients between physicochemical composting parameters and relative number of genera sequences suggest that Planomicrobium and Ohtaekwangia could be considered as biomarkers for AL composting maturation.
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Affiliation(s)
- Germán Tortosa
- Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín (EEZ), Agencia Estatal CSIC, E-419, 18080-Granada, Spain.
| | - Antonio Castellano-Hinojosa
- Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín (EEZ), Agencia Estatal CSIC, E-419, 18080-Granada, Spain
| | - David Correa-Galeote
- Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín (EEZ), Agencia Estatal CSIC, E-419, 18080-Granada, Spain
| | - Eulogio J Bedmar
- Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín (EEZ), Agencia Estatal CSIC, E-419, 18080-Granada, Spain
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44
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Antunes LP, Martins LF, Pereira RV, Thomas AM, Barbosa D, Lemos LN, Silva GMM, Moura LMS, Epamino GWC, Digiampietri LA, Lombardi KC, Ramos PL, Quaggio RB, de Oliveira JCF, Pascon RC, Cruz JBD, da Silva AM, Setubal JC. Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics. Sci Rep 2016; 6:38915. [PMID: 27941956 PMCID: PMC5150989 DOI: 10.1038/srep38915] [Citation(s) in RCA: 125] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2016] [Accepted: 11/14/2016] [Indexed: 12/21/2022] Open
Abstract
Composting is a promising source of new organisms and thermostable enzymes that may be helpful in environmental management and industrial processes. Here we present results of metagenomic- and metatranscriptomic-based analyses of a large composting operation in the São Paulo Zoo Park. This composting exhibits a sustained thermophilic profile (50 °C to 75 °C), which seems to preclude fungal activity. The main novelty of our study is the combination of time-series sampling with shotgun DNA, 16S rRNA gene amplicon, and metatranscriptome high-throughput sequencing, enabling an unprecedented detailed view of microbial community structure, dynamics, and function in this ecosystem. The time-series data showed that the turning procedure has a strong impact on the compost microbiota, restoring to a certain extent the population profile seen at the beginning of the process; and that lignocellulosic biomass deconstruction occurs synergistically and sequentially, with hemicellulose being degraded preferentially to cellulose and lignin. Moreover, our sequencing data allowed near-complete genome reconstruction of five bacterial species previously found in biomass-degrading environments and of a novel biodegrading bacterial species, likely a new genus in the order Bacillales. The data and analyses provided are a rich source for additional investigations of thermophilic composting microbiology.
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Affiliation(s)
| | - Layla Farage Martins
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil
| | | | - Andrew Maltez Thomas
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.,Programa de Pós-Graduação Interunidades em Bioinformática, Universidade de São Paulo, São Paulo, Brazil
| | - Deibs Barbosa
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.,Programa de Pós-Graduação Interunidades em Bioinformática, Universidade de São Paulo, São Paulo, Brazil
| | - Leandro Nascimento Lemos
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.,Programa de Pós-Graduação Interunidades em Bioinformática, Universidade de São Paulo, São Paulo, Brazil
| | - Gianluca Major Machado Silva
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.,Programa de Pós-Graduação Interunidades em Bioinformática, Universidade de São Paulo, São Paulo, Brazil
| | - Livia Maria Silva Moura
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.,Programa de Pós-Graduação Interunidades em Bioinformática, Universidade de São Paulo, São Paulo, Brazil
| | - George Willian Condomitti Epamino
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.,Programa de Pós-Graduação Interunidades em Bioinformática, Universidade de São Paulo, São Paulo, Brazil
| | | | - Karen Cristina Lombardi
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil
| | | | - Ronaldo Bento Quaggio
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil
| | | | | | | | - Aline Maria da Silva
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.,Programa de Pós-Graduação Interunidades em Bioinformática, Universidade de São Paulo, São Paulo, Brazil
| | - João Carlos Setubal
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.,Programa de Pós-Graduação Interunidades em Bioinformática, Universidade de São Paulo, São Paulo, Brazil.,Biocomplexity Institute of Virginia Tech, Blacksburg, VA, USA
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45
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Silva MEF, Lopes AR, Cunha-Queda AC, Nunes OC. Comparison of the bacterial composition of two commercial composts with different physicochemical, stability and maturity properties. WASTE MANAGEMENT (NEW YORK, N.Y.) 2016; 50:20-30. [PMID: 26948668 DOI: 10.1016/j.wasman.2016.02.023] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2015] [Revised: 01/15/2016] [Accepted: 02/20/2016] [Indexed: 06/05/2023]
Abstract
Previously, two municipal solid waste commercial composts (MSW1 and MSW2) were characterized. Although sharing the same type of raw material, most of their physicochemical, stability and maturity properties differed. The present study aimed to characterize them at a microbiological level, and to infer on possible relationships between the composts properties and the structure of their bacterial communities. Both the 16S rRNA gene-based PCR-DGGE profiling and 454-pyrosequencing technology showed that the structure of the bacterial communities of these composts was distinct. The bacterial community of MSW1 was more diverse than that of MSW2. Multivariate analyses revealed that the high electrical conductivity, Cu content as well as the low phytotoxity of compost MSW1, when compared to MSW2, contributed most to shape its bacterial community structure. Indeed, high abundance of halophilic (Halomonadaceae and Brevibacteriaceae) and metal resistant organisms (Brevibacteriaceae and Bacillaceae) were found in MSW1. In addition, Pseudonocardiaceae, Streptomycetaceae, Bacillaceae, and Brevibacteriaceae may have contributed to the high humic-like acids content and low phytotoxicity of MSW1. In contrast, the high organic matter content and the high density of the cultivable fungi population were the parameters most correlated with the structure of the bacterial community of compost MSW2, dominated by Corynebacteriaceae and mainly Aerococcaceae, taxonomic groups not commonly found in composts.
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Affiliation(s)
- Maria Elisabete F Silva
- CI&DEST, Escola Superior de Tecnologia e Gestão de Viseu, Instituto Politécnico de Viseu, 3504-510 Viseu, Portugal; LEPABE, Laboratório de Engenharia de Processos, Ambiente, Biotecnologia e Energia, Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal; LEAF, Centro de Investigação em Agronomia, Alimentos, Ambiente e Paisagem, Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, 1349-017 Lisboa, Portugal
| | - Ana R Lopes
- LEPABE, Laboratório de Engenharia de Processos, Ambiente, Biotecnologia e Energia, Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | - Ana Cristina Cunha-Queda
- LEAF, Centro de Investigação em Agronomia, Alimentos, Ambiente e Paisagem, Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, 1349-017 Lisboa, Portugal
| | - Olga C Nunes
- LEPABE, Laboratório de Engenharia de Processos, Ambiente, Biotecnologia e Energia, Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal.
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46
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Cai L, Chen TB, Gao D, Yu J. Bacterial communities and their association with the bio-drying of sewage sludge. WATER RESEARCH 2016; 90:44-51. [PMID: 26724438 DOI: 10.1016/j.watres.2015.12.026] [Citation(s) in RCA: 61] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2015] [Revised: 12/10/2015] [Accepted: 12/16/2015] [Indexed: 06/05/2023]
Abstract
Bio-drying is a technology that aims to remove water from a material using the microbial heat originating from organic matter degradation. However, the evolution of bacterial communities that are associated with the drying process has not been researched systematically. This study was performed to investigate the variations of bacterial communities and the relationships among bacterial communities, water evaporation, water generation, and organic matter degradation during the bio-drying of sewage sludge. High-throughput pyrosequencing was used to analyze the bacterial communities, while water evaporation and water generation were determined based on an in situ water vapor monitoring device. The values of water evaporation, water generation, and volatile solids degradation were 412.9 g kg(-1) sewage sludge bio-drying material (SSBM), 65.0 g kg(-1) SSBM, and 70.2 g kg(-1) SSBM, respectively. Rarefaction curves and diversity indices showed that bacterial diversity plummeted after the temperature of the bio-drying pile dramatically increased on d 2, which coincided with a remarkable increase of water evaporation on d 2. Bacterial diversity increased when the pile cooled. During the thermophilic phase, in which Acinetobacter and Bacillus were the dominant genera, the rates of water evaporation, water generation, and VS degradation peaked. These results implied that the elevated temperature reshaped the bacterial communities, which played a key role in water evaporation, and the high temperature also contributed to the effective elimination of pathogens.
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Affiliation(s)
- Lu Cai
- Faculty of Architectural, Civil Engineering and Environment, Ningbo University, Ningbo, China; Center for Environmental Remediation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China.
| | - Tong-Bin Chen
- Center for Environmental Remediation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China.
| | - Ding Gao
- Center for Environmental Remediation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China.
| | - Jie Yu
- Faculty of Architectural, Civil Engineering and Environment, Ningbo University, Ningbo, China
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