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Guo H, Li Z, Sun X, Xing M. Impact of earthworms on suppressing dissemination of antibiotic resistance genes during vermicomposting treatment of excess sludge. BIORESOURCE TECHNOLOGY 2024; 406:130991. [PMID: 38885722 DOI: 10.1016/j.biortech.2024.130991] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 06/13/2024] [Accepted: 06/14/2024] [Indexed: 06/20/2024]
Abstract
Earthworms play a crucial role in suppressing the dissemination of antibiotic resistance genes (ARGs) during vermicomposting. However, there is still a lack of how earthworms influence the spread of ARGs. To address this gap, a microcosm experiment was conducted, incorporating earthworms and utilizing metagenomics and quantitative PCR to assess the impact of earthworms on microbial interactions and the removal of plasmid-induced ARGs. The findings revealed that vermicomposting led to a reduction in the relative abundance of ARGs by altering microbial communities and interactions. Significantly, vermicomposting demonstrated an impressive capability, reducing 92% of ARGs donor bacteria and impeding the transmission of 94% of the RP4 plasmid. Furthermore, through structural equation model analysis, it was determined that mobile genetic elements and environmental variables were the primary influencers of ARG reduction. Overall, this study offers a fresh perspective on the effects of vermicomposting and its potential to mitigate the spread of ARGs.
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Affiliation(s)
- Hongan Guo
- Key Laboratory of Yangtze Water Environment for Ministry of Education, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China
| | - Zhan Li
- Key Laboratory of Yangtze Water Environment for Ministry of Education, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China
| | - Xiaojie Sun
- Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guilin University of Technology, Guilin 541004, China
| | - Meiyan Xing
- Key Laboratory of Yangtze Water Environment for Ministry of Education, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China.
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Zhou Z, Keiblinger KM, Huang Y, Bhople P, Shi X, Yang S, Yu F, Liu D. Virome and metagenomic sequencing reveal the impact of microbial inoculants on suppressions of antibiotic resistome and viruses during co-composting. JOURNAL OF HAZARDOUS MATERIALS 2024; 477:135355. [PMID: 39068883 DOI: 10.1016/j.jhazmat.2024.135355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2024] [Revised: 07/01/2024] [Accepted: 07/26/2024] [Indexed: 07/30/2024]
Abstract
Co-composting with exogenous microbial inoculant, presents an effective approach for the harmless utilization of livestock manure and agroforestry wastes. However, the impact of inoculant application on the variations of viral and antibiotic resistance genes (ARGs) remains poorly understood, particularly under varying manure quantity (low 10 % vs. high 20 % w/w). Thus, employing virome and metagenomic sequencing, we examined the influence of Streptomyces-Bacillus Inoculants (SBI) on viral communities, phytopathogen, ARGs, mobile genetic elements, and their interrelations. Our results indicate that SBI shifted dominant bacterial species from Phenylobacterium to thermotropic Bordetella, and the quantity of manure mediates the effect of SBI on whole bacterial community. Major ARGs and genetic elements experienced substantial changes with SBI addition. There was a higher ARGs elimination rate in the composts with low (∼76 %) than those with high manure (∼70 %) application. Virus emerged as a critical factor influencing ARG dynamics. We observed a significant variation in virus community, transitioning from Gemycircularvirus- (∼95 %) to Chlamydiamicrovirus-dominance. RDA analysis revealed that Gemycircularvirus was the most influential taxon in shaping ARGs, with its abundance decreased approximately 80 % after composting. Collectively, these findings underscore the role of microbial inoculants in modulating virus communities and ARGs during biowaste co-composting.
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Affiliation(s)
- Ziyan Zhou
- The Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China
| | - Katharina Maria Keiblinger
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life-Sciences, Vienna 1190, Austria
| | - Yimei Huang
- Key Laboratory of Plant Nutrition and The Agri-environment in Northwest China, Ministry of Agriculture, Key Laboratory of Low-carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, College of Natural Resources and Environment, Northwest A&F University, Shaanxi 712100, China
| | - Parag Bhople
- Crops, Environment, and Land Use Department, Environment Research Centre, Teagasc, Johnstown Castle, Wexford Y35TC98, Ireland
| | - Xiaofei Shi
- The Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China
| | - Shimei Yang
- The Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China
| | - Fuqiang Yu
- The Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China.
| | - Dong Liu
- The Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China.
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Yao X, Liu Q, Li D. Mechanism underlying effects of cellulose-degrading microbial inoculation on amino acid degradation and biosynthesis during composting. BIORESOURCE TECHNOLOGY 2024; 403:130899. [PMID: 38801951 DOI: 10.1016/j.biortech.2024.130899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2024] [Revised: 05/23/2024] [Accepted: 05/24/2024] [Indexed: 05/29/2024]
Abstract
Amino acids are essential organic compounds in composting products. However, the mechanism underlying the amino acid metabolism during composting remains unclear. This study aims at exploring the impacts of inoculating cellulose-degrading microbes on amino acid metabolism during composting with mulberry branches and silkworm excrements. Cellulose-degrading microbial inoculation enhanced amino acid degradation by 18%-43% by increasing protease and sucrase activities and stimulating eight amino acid degradation pathways from the initial to thermophilic phases, with Enterococcus, Saccharomonospora, Corynebacterium being the dominant bacterial genera, but stimulated amino acid production by 54% by increasing sucrase and urease activities, decreasing β-glucosidase activities, and stimulating twenty-two amino acid synthesis pathways at the mature phase, with Thermobifida, Devosia, and Cellulosimicrobium being the dominant bacterial genera. The results suggest that cellulose-degrading microbial inoculation enhances amino acid degradation from the initial to thermophilic phases and biosynthesis at the mature phase, thereby improving the quality of organic fertilizer.
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Affiliation(s)
- Xiaofang Yao
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Guangxi Industrial Technology Research Institute for Karst Rocky Desertification Control, Nanning 530012, China; Huanjiang Agriculture Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Karst Ecological Processes and Services, Huanjiang Observation and Research Station for Karst Ecosystems, Chinese Academy of Sciences, Huanjiang 547100, Guangxi, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Qiumei Liu
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Guangxi Industrial Technology Research Institute for Karst Rocky Desertification Control, Nanning 530012, China; Huanjiang Agriculture Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Karst Ecological Processes and Services, Huanjiang Observation and Research Station for Karst Ecosystems, Chinese Academy of Sciences, Huanjiang 547100, Guangxi, China.
| | - Dejun Li
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Guangxi Industrial Technology Research Institute for Karst Rocky Desertification Control, Nanning 530012, China; Huanjiang Agriculture Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Karst Ecological Processes and Services, Huanjiang Observation and Research Station for Karst Ecosystems, Chinese Academy of Sciences, Huanjiang 547100, Guangxi, China.
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Guo F, Wang C, Wang S, Wu S, Zhao X, Li G. Fenton-ultrasound treatment of corn stalks enhances humification during composting by stimulating the inheritance and synthesis of polyphenolic compounds-preliminary evidence from a laboratory trial. CHEMOSPHERE 2024; 358:142133. [PMID: 38670511 DOI: 10.1016/j.chemosphere.2024.142133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2024] [Revised: 04/17/2024] [Accepted: 04/22/2024] [Indexed: 04/28/2024]
Abstract
The impact of Fenton-ultrasound treatment on the production of polyphenols and humic acid (HA) during corn stalk composting was investigated by analyzing the potential for microbial assimilation of polysaccharides in corn stalks to generate polyphenols using a13C-glucose tracer. The results showed that Fenton-ultrasound treatment promoted the decomposition of lignocellulose and increased the HA content, degree of polymerization (DP), and humification index (HI). The primary factor could be attributed to Fenton-ultrasound treatment-induced enhanced the abundance of lignocellulose-degrading microorganisms, as Firmicutes, Actinobacteria phylum and Aspergillis genus, which serve as the primary driving forces behind polyphenol and HA formation. Additionally, the utilization of a13C isotope tracer revealed that corn stalk polysaccharide decomposition products can be assimilated by microbes and subsequently secrete polyphenolic compounds. This study highlights the potential of microbial activity to generate phenolic compounds, offering a theoretical basis for increasing polyphenol production and promoting HA formation during composting.
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Affiliation(s)
- Fenglei Guo
- College of Land Science and Technology, China Agricultural University, Beijing, 100193, China
| | - Chen Wang
- College of Land Science and Technology, China Agricultural University, Beijing, 100193, China
| | - Shuang Wang
- College of Land Science and Technology, China Agricultural University, Beijing, 100193, China
| | - Shuaipeng Wu
- College of Land Science and Technology, China Agricultural University, Beijing, 100193, China
| | - Xiaorong Zhao
- College of Land Science and Technology, China Agricultural University, Beijing, 100193, China
| | - Guitong Li
- College of Land Science and Technology, China Agricultural University, Beijing, 100193, China.
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Luo Q, Wang H, Lu X, Wang C, Chen R, Cheng J, He T, Fu T. Potential of combined reactor and static composting applications for the removal of heavy metals and antibiotic resistance genes from chicken manure. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 356:120592. [PMID: 38508009 DOI: 10.1016/j.jenvman.2024.120592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 03/01/2024] [Accepted: 03/10/2024] [Indexed: 03/22/2024]
Abstract
Chicken manure (CM) can pose a serious threat to environmental and human health, and need to be managed properly. The compost can effectively treat CM. However, there is limited research on the heavy metals and antibiotic resistance genes (ARGs) during compost CM. In this study, the combined application of reactor and static composting (RSC) was used to produce organic fertilizer of CM (OCM), and heavy metals, ARGs and bacterial community structure was investigated. The results show that RSC could be used to produce OCM, and OCM meet the National organic fertilizer standard (NY/T525-2021). Compared to the initial CM, DTPA-Cu, DTPA-Zn, DTPA-Pb, DTPA-Cr, DTPA-Ni and DTPA-As in OCM decreased by 40.83%, 23.73%, 34.27%, 38.62%, 16.26%, and 43.35%, respectively. RSC decreased the relative abundance of ARGs in CM by 84.06%, while the relative abundance of sul1 and ermC increased. In addition, the relative abundance and diversity of ARGs were mainly influenced by the bacterial community, with Actinobacteria, Firmicutes, and Proteobacteria becoming the dominant phyla during composting, and probably being the main carriers and dispersers of most of the ARGs. Network analyses confirmed that Gracilibacillus, Lactobacillus, Nocardiopsis, Mesorhizobium and Salinicoccus were the main potential hosts of ARGs, with the main potential hosts of sul1 and ermC being Mesorhizobium and Salinicoccus. The passivation and physicochemical properties of heavy metals contribute to the removal of ARGs, with sul1 and ermC being affected by the toal heavy metals. Application of RSC allows CM to produce mature, safe organic fertilizer after 32 d and reduces the risk of rebound from ARGs, but the issues of sul1 and ermC gene removal cannot be ignored.
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Affiliation(s)
- Qu Luo
- College of Resource and Environmental Engineering, Guizhou University, Guiyang, 550025, Guizhou, China; Guizhou Engineering Laboratory of Mountain Livestock and Poultry Farming Pollution Control and Resource Technology, Institute of New Rural Development, Guizhou University, Guiyang, 550025, China
| | - Hu Wang
- Guizhou Chuyang Ecological Environmental Protection Technology Co., Ltd., Guizhou, 550003, China
| | - Xiaoqing Lu
- College of Resource and Environmental Engineering, Guizhou University, Guiyang, 550025, Guizhou, China; Guizhou Engineering Laboratory of Mountain Livestock and Poultry Farming Pollution Control and Resource Technology, Institute of New Rural Development, Guizhou University, Guiyang, 550025, China
| | - Can Wang
- Lijiang Agricultural Environmental Protection Monitoring Station, Lijiang, Yunnan, 674100, China
| | - Ruiying Chen
- College of Resource and Environmental Engineering, Guizhou University, Guiyang, 550025, Guizhou, China; Guizhou Engineering Laboratory of Mountain Livestock and Poultry Farming Pollution Control and Resource Technology, Institute of New Rural Development, Guizhou University, Guiyang, 550025, China
| | - Jianbo Cheng
- Guizhou Engineering Laboratory of Mountain Livestock and Poultry Farming Pollution Control and Resource Technology, Institute of New Rural Development, Guizhou University, Guiyang, 550025, China
| | - Tengbing He
- College of Resource and Environmental Engineering, Guizhou University, Guiyang, 550025, Guizhou, China; Guizhou Engineering Laboratory of Mountain Livestock and Poultry Farming Pollution Control and Resource Technology, Institute of New Rural Development, Guizhou University, Guiyang, 550025, China
| | - Tianling Fu
- College of Resource and Environmental Engineering, Guizhou University, Guiyang, 550025, Guizhou, China; Guizhou Engineering Laboratory of Mountain Livestock and Poultry Farming Pollution Control and Resource Technology, Institute of New Rural Development, Guizhou University, Guiyang, 550025, China.
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Wang Q, Zhao M, Wang Y, Xie Z, Zhao S, You S, Chen Q, Zhang W, Qin Y, Zhang G. Microbial Inoculation during the Short-Term Composting Process Enhances the Nutritional and Functional Properties of Oyster Mushrooms ( Pleurotus ostreatus). Life (Basel) 2024; 14:201. [PMID: 38398710 PMCID: PMC10890702 DOI: 10.3390/life14020201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Revised: 01/21/2024] [Accepted: 01/30/2024] [Indexed: 02/25/2024] Open
Abstract
In recent years, short-term composting techniques have been widely applied in oyster mushroom cultivation, but there is still a lack of systematic research on their impact on the nutritional and functional properties of fruiting bodies. In this study, the microbial inoculant Streptomyces thermoviolaceus BUA-FM01 (ST) was applied in the short-term composting process for oyster mushroom cultivation. The agronomic traits, nutritional composition, flavor compounds, and antioxidant activity of fruiting bodies from the first three flushes were evaluated. The results show that microbial inoculation significantly (p < 0.05) reduced the total carbon content and C/N ratio of the composted substrates and, furthermore, increased the total yield of the fruiting bodies. Moreover, microbial inoculation significantly (p < 0.05) increased the crude protein, crude polysaccharide, total amino acid, and essential amino acid contents of the fruiting bodies. The fruiting bodies of the first flush of ST treatment possessed the highest umami amino acid content and equivalent umami concentration value. Furthermore, microbial inoculation significantly (p < 0.05) enhanced the scavenging ability of crude polysaccharides toward free radicals. The results indicate that microbial inoculation has many benefits for the composting cultivating process of oyster mushrooms and good application prospects.
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Affiliation(s)
- Qiuying Wang
- College of Horticulture, Xinjiang Agricultural University, Urumqi 830052, China; (Q.W.); (Y.W.)
- Beijing Key Laboratory for Agricultural Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing 102206, China; (M.Z.); (Z.X.); (S.Z.); (S.Y.); (Q.C.); (W.Z.)
| | - Minrui Zhao
- Beijing Key Laboratory for Agricultural Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing 102206, China; (M.Z.); (Z.X.); (S.Z.); (S.Y.); (Q.C.); (W.Z.)
| | - Yiyang Wang
- College of Horticulture, Xinjiang Agricultural University, Urumqi 830052, China; (Q.W.); (Y.W.)
- Beijing Key Laboratory for Agricultural Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing 102206, China; (M.Z.); (Z.X.); (S.Z.); (S.Y.); (Q.C.); (W.Z.)
| | - Zhenfei Xie
- Beijing Key Laboratory for Agricultural Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing 102206, China; (M.Z.); (Z.X.); (S.Z.); (S.Y.); (Q.C.); (W.Z.)
| | - Shunyin Zhao
- Beijing Key Laboratory for Agricultural Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing 102206, China; (M.Z.); (Z.X.); (S.Z.); (S.Y.); (Q.C.); (W.Z.)
| | - Shuning You
- Beijing Key Laboratory for Agricultural Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing 102206, China; (M.Z.); (Z.X.); (S.Z.); (S.Y.); (Q.C.); (W.Z.)
| | - Qingjun Chen
- Beijing Key Laboratory for Agricultural Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing 102206, China; (M.Z.); (Z.X.); (S.Z.); (S.Y.); (Q.C.); (W.Z.)
| | - Weiwei Zhang
- Beijing Key Laboratory for Agricultural Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing 102206, China; (M.Z.); (Z.X.); (S.Z.); (S.Y.); (Q.C.); (W.Z.)
| | - Yong Qin
- College of Horticulture, Xinjiang Agricultural University, Urumqi 830052, China; (Q.W.); (Y.W.)
| | - Guoqing Zhang
- Beijing Key Laboratory for Agricultural Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing 102206, China; (M.Z.); (Z.X.); (S.Z.); (S.Y.); (Q.C.); (W.Z.)
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Ciric M, Šaraba V, Budin C, de Boer T, Nikodinovic-Runic J. Polyurethane-Degrading Potential of Alkaline Groundwater Bacteria. MICROBIAL ECOLOGY 2023; 87:21. [PMID: 38153543 DOI: 10.1007/s00248-023-02338-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 12/24/2023] [Indexed: 12/29/2023]
Abstract
Plastic waste is a global environmental burden and long-lasting plastic polymers, including ubiquitous and toxic polyurethanes (PUs), rapidly accumulate in the water environments. In this study, samples were collected from the three alkaline groundwater occurrences in the geotectonic regions of the Pannonian basin of northern Serbia (Torda and Slankamen Banja) and Inner Dinarides of western Serbia (Mokra Gora) with aim to isolate and identify bacteria with plastic- and lignocellulose-degrading potential, that could be applied to reduce the burden of environmental plastic pollution. The investigated occurrences belong to cold, mildly alkaline (pH: 7.6-7.9) brackish and hyperalkaline (pH: 11.5) fresh groundwaters of the SO4 - Na + K, Cl - Na + K and OH, Cl - Ca, Na + K genetic type. Full-length 16S rDNA sequencing, using Oxford Nanopore sequencing device, was performed with DNA extracted from colonies obtained by cultivation of all groundwater samples, as well as with DNA extracted directly from one groundwater sample. The most abundant genera belong to Pseudomonas, Acidovorax, Kocuria and Methylotenera. All screened isolates (100%) had the ability to grow on at least 3 of the tested plastic and lignocellulosic substrates, with 53.9% isolates degrading plastic substrate Impranil® DLN-SD (SD), a model compound for PUs degradation. Isolates degrading SD that were identified by partial 16S rDNA sequencing belong to the Stenotrophomonas, Pseudomonas, Paraburkholderia, Aeromonas, Vibrio and Acidovorax genera. Taking into account that plastics, including commonly produced PUs, are widespread in groundwater, identification of PUs-degrading bacteria may have potential applications in bioremediation of groundwater polluted with this polymer.
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Affiliation(s)
- Milica Ciric
- Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia.
| | - Vladimir Šaraba
- Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia
| | - Clémence Budin
- Microlife Solutions, Science Park 406, 1098XH, Amsterdam, The Netherlands
| | - Tjalf de Boer
- Microlife Solutions, Science Park 406, 1098XH, Amsterdam, The Netherlands
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Li T, Zhang X, Wang X, Yan Z, Peng C, Zhao S, Xu D, Liu D, Shen Q. Effect of inoculating thermophilic bacterial consortia on compost efficiency and quality. WASTE MANAGEMENT (NEW YORK, N.Y.) 2023; 170:341-353. [PMID: 37748282 DOI: 10.1016/j.wasman.2023.09.023] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2023] [Revised: 09/15/2023] [Accepted: 09/18/2023] [Indexed: 09/27/2023]
Abstract
The objective of this study was to investigate the potential effects of thermophilic bacterial consortia on compost efficiency and quality. The application of bacterial consortia resulted in an earlier onset of the thermophilic period (THP), an increased upper temperature limit, and an extended duration of the THP by 3-5 days compared to the control group (CK). Microbial inoculation significantly improved the efficiency of organic matter degradation, as well as the content of water-soluble nitrogen (WSN) and humic acid-carbon (HAC). In the case of consortium Ⅱ inoculation (T2), the activities of cellobiohydrolase, β-glucosidase, and protease were increased by 81.81 %, 70.13 %, and 74.09 % at the THP respectively compared to CK. During the maturation stage, T2 also exhibited the highest PV, n/PIII, n value (1.33) and HAC content (39.53 mg·g-1), indicating that inoculation of consortium Ⅱ effectively promoted substrate maturity and product quality. Moreover, this inoculation effectively optimized the bacterial communities, particularly the growth of Planococcus, Chelatococcus, and Chelativorans during the composting, which were involved in carbon and nitrogen conversion or HAC synthesis. Carbohydrate and amino acid metabolism, and membrane transport were predominant in the consortia-inoculated samples, with an increased gene abundance, suggesting that inoculation contributed to promoting the biodegradation of lignocellulose and the exchange of favorable factors. In conclusion, this study demonstrates that inoculating thermophilic bacterial consortia has a positive impact on enhancing the resource utilization efficiency of agricultural waste and improving the quality of compost products.
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Affiliation(s)
- Tuo Li
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, China; College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing 210095, China
| | - Xiangkai Zhang
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, China; College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing 210095, China
| | - Xuanqing Wang
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
| | - Zhangxin Yan
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, China; College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing 210095, China
| | - Chenglin Peng
- Institute of Plant Protection and Soil Fertilizer, Hubei Academy of Agricultural Sciences, National Agricultural Experimental Station for Soil Quality, Wuhan 430064, China
| | - Shujun Zhao
- Institute of Plant Protection and Soil Fertilizer, Hubei Academy of Agricultural Sciences, National Agricultural Experimental Station for Soil Quality, Wuhan 430064, China
| | - Dabing Xu
- Institute of Plant Protection and Soil Fertilizer, Hubei Academy of Agricultural Sciences, National Agricultural Experimental Station for Soil Quality, Wuhan 430064, China.
| | - Dongyang Liu
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, China; College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing 210095, China.
| | - Qirong Shen
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, China; College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing 210095, China
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Liu H, Shi B, Liu W, Wang L, Zhu L, Wang J, Kim YM, Wang J. Effects of magnesium-modified biochar on antibiotic resistance genes and microbial communities in chicken manure composting. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:108553-108564. [PMID: 37752398 DOI: 10.1007/s11356-023-29804-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Accepted: 09/06/2023] [Indexed: 09/28/2023]
Abstract
Abatement of antibiotic resistance genes (ARGs) in livestock manure by composting has attracted attention. This study investigated the effect of adding magnesium-modified biochar (MBC) on ARGs and microbial communities in chicken manure composting. Twelve genes for tetracyclines, sulfonamides, and macrolides, and mobile genetic elements were measured in the compost pile. The results showed that after 45 days of the composting, the treatment groups of MBC had longer high temperature periods, significantly higher germination indices (GI) and lower phytotoxicity. There were four major dominant phyla (Firmicutes, Actinobacteriota, Proteobacteria, and Bacteroidota) in the compost. The abundance of Firmicutes decreased significantly during the compost cooling period; tetracycline resistance genes demonstrated an extremely significant positive correlation with Firmicutes, showing a trend of the same increase and decrease with composting time; tetT, tetO, tetM, tetW, ermB, and intI2 were reduced in the MBC group; the total abundance of resistance genes in the 2% MBC addition group was 0.67 times that of the control; Proteobacteria and Chloroflexi were also significantly lower than the other treatment groups. Most ARGs were significantly associated with mobile genetic elements (MGEs); MBC can reduce the spread and diffusion of ARGs by reducing the abundance of MGEs and inhibiting horizontal gene transfer (HGT).
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Affiliation(s)
- Hunan Liu
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, Key Laboratory of Agricultural Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, 61 Daizong Road, Taian, 271018, China
| | - Baihui Shi
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, Key Laboratory of Agricultural Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, 61 Daizong Road, Taian, 271018, China
| | - Wenwen Liu
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, Key Laboratory of Agricultural Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, 61 Daizong Road, Taian, 271018, China
| | - Lanjun Wang
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, Key Laboratory of Agricultural Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, 61 Daizong Road, Taian, 271018, China
| | - Lusheng Zhu
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, Key Laboratory of Agricultural Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, 61 Daizong Road, Taian, 271018, China
| | - Jun Wang
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, Key Laboratory of Agricultural Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, 61 Daizong Road, Taian, 271018, China
| | - Young Mo Kim
- Department of Civil and Environmental Engineering, Hanyang University, Seongdong-Gu, Seoul, 04763, Republic of Korea
| | - Jinhua Wang
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, Key Laboratory of Agricultural Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, 61 Daizong Road, Taian, 271018, China.
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10
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Santos-Pereira C, Sousa J, Costa ÂMA, Santos AO, Rito T, Soares P, Franco-Duarte R, Silvério SC, Rodrigues LR. Functional and sequence-based metagenomics to uncover carbohydrate-degrading enzymes from composting samples. Appl Microbiol Biotechnol 2023:10.1007/s00253-023-12627-9. [PMID: 37417976 PMCID: PMC10390414 DOI: 10.1007/s00253-023-12627-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2023] [Revised: 05/25/2023] [Accepted: 05/31/2023] [Indexed: 07/08/2023]
Abstract
The renewable, abundant , and low-cost nature of lignocellulosic biomass can play an important role in the sustainable production of bioenergy and several added-value bioproducts, thus providing alternative solutions to counteract the global energetic and industrial demands. The efficient conversion of lignocellulosic biomass greatly relies on the catalytic activity of carbohydrate-active enzymes (CAZymes). Finding novel and robust biocatalysts, capable of being active under harsh industrial conditions, is thus imperative to achieve an economically feasible process. In this study, thermophilic compost samples from three Portuguese companies were collected, and their metagenomic DNA was extracted and sequenced through shotgun sequencing. A novel multi-step bioinformatic pipeline was developed to find CAZymes and characterize the taxonomic and functional profiles of the microbial communities, using both reads and metagenome-assembled genomes (MAGs) as input. The samples' microbiome was dominated by bacteria, where the classes Gammaproteobacteria, Alphaproteobacteria, and Balneolia stood out for their higher abundance, indicating that the degradation of compost biomass is mainly driven by bacterial enzymatic activity. Furthermore, the functional studies revealed that our samples are a rich reservoir of glycoside hydrolases (GH), particularly of GH5 and GH9 cellulases, and GH3 oligosaccharide-degrading enzymes. We further constructed metagenomic fosmid libraries with the compost DNA and demonstrated that a great number of clones exhibited β-glucosidase activity. The comparison of our samples with others from the literature showed that, independently of the composition and process conditions, composting is an excellent source of lignocellulose-degrading enzymes. To the best of our knowledge, this is the first comparative study on the CAZyme abundance and taxonomic/functional profiles of Portuguese compost samples. KEY POINTS: • Sequence- and function-based metagenomics were used to find CAZymes in compost samples. • Thermophilic composts proved to be rich in bacterial GH3, GH5, and GH9 enzymes. • Compost-derived fosmid libraries are enriched in clones with β-glucosidase activity.
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Affiliation(s)
- Cátia Santos-Pereira
- CEB-Centre of Biological Engineering, Universidade Do Minho, Campus de Gualtar, 4710-057, Braga, Portugal
- LABBELS-Associate Laboratory, Guimarães, Braga, Portugal
| | - Joana Sousa
- CEB-Centre of Biological Engineering, Universidade Do Minho, Campus de Gualtar, 4710-057, Braga, Portugal
- LABBELS-Associate Laboratory, Guimarães, Braga, Portugal
| | - Ângela M A Costa
- CEB-Centre of Biological Engineering, Universidade Do Minho, Campus de Gualtar, 4710-057, Braga, Portugal
- LABBELS-Associate Laboratory, Guimarães, Braga, Portugal
| | - Andréia O Santos
- CEB-Centre of Biological Engineering, Universidade Do Minho, Campus de Gualtar, 4710-057, Braga, Portugal
- LABBELS-Associate Laboratory, Guimarães, Braga, Portugal
| | - Teresa Rito
- CBMA-Centre of Molecular and Environmental Biology, Department of Biology, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal
- IB-S-Institute of Science and Innovation for Bio-Sustainability, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal
| | - Pedro Soares
- CBMA-Centre of Molecular and Environmental Biology, Department of Biology, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal
- IB-S-Institute of Science and Innovation for Bio-Sustainability, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal
| | - Ricardo Franco-Duarte
- CBMA-Centre of Molecular and Environmental Biology, Department of Biology, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal
- IB-S-Institute of Science and Innovation for Bio-Sustainability, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal
| | - Sara C Silvério
- CEB-Centre of Biological Engineering, Universidade Do Minho, Campus de Gualtar, 4710-057, Braga, Portugal.
- LABBELS-Associate Laboratory, Guimarães, Braga, Portugal.
| | - Lígia R Rodrigues
- CEB-Centre of Biological Engineering, Universidade Do Minho, Campus de Gualtar, 4710-057, Braga, Portugal
- LABBELS-Associate Laboratory, Guimarães, Braga, Portugal
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11
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Liu X, Rong X, Yang J, Li H, Hu W, Yang Y, Jiang G, Xiao R, Deng X, Xie G, Luo G, Zhang J. Community succession of microbial populations related to CNPS biological transformations regulates product maturity during cow-manure-driven composting. BIORESOURCE TECHNOLOGY 2023; 369:128493. [PMID: 36526118 DOI: 10.1016/j.biortech.2022.128493] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2022] [Revised: 12/11/2022] [Accepted: 12/12/2022] [Indexed: 06/17/2023]
Abstract
The main objective of present study was to understand the community succession of microbial populations related to carbon-nitrogen-phosphorus-sulfur (CNPS) biogeochemical cycles during cow-manure-driven composting and their correlation with product maturity. The abundance of microbial populations associated with C degradation, nitrification, cellular-P transport, inorganic-P dissolution, and organic-P mineralization decreased gradually with composting but increased at the maturation phase. The abundance of populations related to N-fixation, nitrate-reduction, and ammonification increased during the mesophilic stage and decreased during the thermophilic and maturation stages. The abundance of populations related to C fixation and denitrification increased with composting; however, the latter tended to decrease at the maturation stage. Populations related to organic-P mineralization were the key manipulators regulating compost maturity, followed by those related to denitrification and nitrification; those populations were mediated by inorganic N and available P content. This study highlighted the consequence of microbe-driven P mineralization in improving composting efficiency and product quality.
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Affiliation(s)
- Xin Liu
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, China
| | - Xiangmin Rong
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, China; National Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Changsha 410128, China
| | - Junyan Yang
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, China; Hunan Wodi Ecological Fertilizer Co. Ltd, Xiangtan 411213, China
| | - Han Li
- Hunan Wodi Ecological Fertilizer Co. Ltd, Xiangtan 411213, China
| | - Wang Hu
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, China; Hunan Wodi Ecological Fertilizer Co. Ltd, Xiangtan 411213, China
| | - Yong Yang
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, China; National Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Changsha 410128, China
| | - Guoliang Jiang
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, China
| | - Rusheng Xiao
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, China
| | - Xingxiang Deng
- Hunan Wodi Ecological Fertilizer Co. Ltd, Xiangtan 411213, China
| | - Guixian Xie
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, China; National Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Changsha 410128, China
| | - Gongwen Luo
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, China; National Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Changsha 410128, China.
| | - Jiachao Zhang
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, China; National Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Changsha 410128, China
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12
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Li H, Xu X, Zhang M, Zhang Y, Zhao Y, Jiang X, Xin X, Zhang Z, Zhang R, Gui Z. Accelerated degradation of cellulose in silkworm excrement by the interaction of housefly larvae and cellulose-degrading bacteria. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 323:116295. [PMID: 36150354 DOI: 10.1016/j.jenvman.2022.116295] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 09/11/2022] [Accepted: 09/13/2022] [Indexed: 06/16/2023]
Abstract
The environmental pollution caused by silkworm (Bombyx mori) excrement is prominent, and rich in refractory cellulose is the bottleneck restricting the efficient recycling of silkworm excrement. This study was performed to investigate the effects of housefly larvae vermicomposting on the biodegradation of cellulose in silkworm excrement. After six days, a 58.90% reduction of cellulose content in treatment groups was observed, which was significantly higher than 11.5% of the control groups without housefly larvae. Three cellulose-degrading bacterial strains were isolated from silkworm excrement, which were identified as Bacillus licheniformis, Bacillus amyloliquefaciens, and Bacillus subtilis based on 16S rRNA gene sequence analysis. These three bacterial stains had a high cellulose degradation index (HC value ranged to between 1.86 and 5.97 and FPase ranged from 5.07 U/mL to 7.31 U/mL). It was found that housefly larvae increased the abundance of cellulose-degrading bacterial genus (Bacillus and Pseudomonas) by regulating the external environmental conditions (temperature and pH). Carbohydrate metabolism was the bacterial communities' primary function during vermicomposting based on the PICRUSt. The results of Tax4Fun indicated that the abundance of endo-β-1,4-glucanase and exo-β-1,4-glucanase increased rapidly and maintained at a higher level in silkworm excrement due to the addition of housefly larvae, which contributed to the accelerated degradation of cellulose in silkworm excrement. The finding of this investigation showed that housefly larvae can significantly accelerate the degradation of cellulose in silkworm excrement by increasing the abundance of cellulose-degrading bacterial genera and cellulase.
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Affiliation(s)
- Hao Li
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, Jiangsu, China; Sericultural Research Institute, Chinese Academy of Agricultural Sciences, Zhenjiang, 212100, Jiangsu, China
| | - Xueming Xu
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, Jiangsu, China
| | - Minqi Zhang
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, Jiangsu, China
| | - Yuanhao Zhang
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, Jiangsu, China
| | - Ying Zhao
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, Jiangsu, China
| | - Xueping Jiang
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, Jiangsu, China
| | - Xiangdong Xin
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, Jiangsu, China
| | - Zhendong Zhang
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, Jiangsu, China; Sericultural Research Institute, Chinese Academy of Agricultural Sciences, Zhenjiang, 212100, Jiangsu, China
| | - Ran Zhang
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, Jiangsu, China; Sericultural Research Institute, Chinese Academy of Agricultural Sciences, Zhenjiang, 212100, Jiangsu, China
| | - Zhongzheng Gui
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, Jiangsu, China; Sericultural Research Institute, Chinese Academy of Agricultural Sciences, Zhenjiang, 212100, Jiangsu, China.
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13
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Wang Z, Zhao M, Xie J, Wang Z, Tsui TH, Ren X, Zhang Z, Wang Q. Insight into the fraction variations of selenium and their effects on humification during composting. BIORESOURCE TECHNOLOGY 2022; 364:128050. [PMID: 36184014 DOI: 10.1016/j.biortech.2022.128050] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 09/25/2022] [Accepted: 09/26/2022] [Indexed: 06/16/2023]
Abstract
This study investigated the variation of selenium fractions and their effects on humification during composting. Selenite and selenate were added to a mixture of goat manure and wheat straw for composting. The results demonstrated that the bioavailable Se in the selenite added treatment (9.3-13.8%) was lower than in the selenate added treatment (18.1-47.3%). Meanwhile, the HA/FA of selenite and selenate added treatments were higher than in control, indicating that the selenium addition (especially selenite) promoted the humification of composting. Importantly, selenite enriched the abundance of Tepidimicrobium and Virgibacillus which were responsible to improve humification performance. Selenate increased the abundance of Thermobifida and Cellvibrio which facilitated the composting humification. The genes encoding CAZymes involved in the degradation of organic materials were also analyzed, and selenium could contribute to the synthesis of humus. KEGG pathway analysis revealed that the selenite addition promoted amino acids and carbohydrate metabolism compared to the control.
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Affiliation(s)
- Zhaoyu Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
| | - Mengxiang Zhao
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
| | - Jianwen Xie
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
| | - Zhen Wang
- College of Ecology and Environment, Ningxia University, Yinchuan, Ningxia 750021, China
| | - To-Hung Tsui
- NUS Environment Research Institute, National University of Singapore, 5A Engineering Drive 1, Singapore 117411, Singapore
| | - Xiuna Ren
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
| | - Zengqiang Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
| | - Quan Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China; Breeding Base for State Key Lab of Land Degradation and Ecological Restoration in Northwestern China / Key Lab of Restoration and Reconstruction of Degraded Ecosystems in Northwestern China of Ministry of Education, China.
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14
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Gaspar SS, Assis LLR, Carvalho CA, Buttrós VH, Ferreira GMDR, Schwan RF, Pasqual M, Rodrigues FA, Rigobelo EC, Castro RP, Dória J. Dynamics of microbiota and physicochemical characterization of food waste in a new type of composter. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2022. [DOI: 10.3389/fsufs.2022.960196] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Organic wastes are considered the most significant components of urban solid waste, negatively affecting the environment. It is essential to use renewable resources to minimize environmental risks. Composting is one of the most sustainable methods for managing organic waste and involves transforming organic matter into a stable and nutrient-enriched biofertilizer, through the succession of microbial populations into a stabilized product. This work aimed to evaluate the efficiency of the new type of composter and the microbial and physiochemical dynamics during composting aiming to accelerate the degradation of organic waste and produce high-quality compost. Two inoculants were evaluated: (1) efficient microorganisms (EM); (2) commercial inoculum (CI), which were compared to a control treatment, without inoculation. Composting was performed by mixing organic waste from gardening with residues from the University's Restaurant (C/N ratio 30:1). The composting process was carried out in a 1 m3 composter with controlled temperature and aeration. The thermophilic phase for all treatments was reached on the second day. Mature compost was obtained after an average of 120 days, and composting in all treatments showed an increase in the availability of P and micronutrients. The new composter helped to accelerate the decomposition of residues, through the maintenance of adequate oxygen content and temperature control inside the cells, providing high metabolic activity of microorganisms, contributing to an increase in physicochemical characteristics, also reducing the composting time in both treatments. During composting, the bacteria and actinobacteria populations were higher than yeasts and filamentous fungi. The inoculated treatments presented advantages showing more significant mineralization of P-available and micronutrients such as Mn and Zn in terms of the quality of the final product in comparison to the control treatment. Finally, the new composter and the addition of inoculants contributed significantly to the efficiency of the process of composting organic waste.
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15
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Li T, Kong Z, Zhang X, Wang X, Chai L, Liu D, Shen Q. Deciphering the effect of exogenous lignocellulases addition on the composting efficiency and microbial communities. BIORESOURCE TECHNOLOGY 2022; 361:127751. [PMID: 35940325 DOI: 10.1016/j.biortech.2022.127751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Revised: 08/01/2022] [Accepted: 08/03/2022] [Indexed: 06/15/2023]
Abstract
This study aimed to reveal the potential effects of exogenous lignocellulases addition on the composting efficiency and microbial communities. The lignocellulases addition at the mesophilic phase (MEP) greatly expedited the substrate conversion and the rise of temperature at the initial stage, driving the early arrival of thermophilic phase (THP), caused by the positive effects of Sphingobacterium and Brevundimonas. When being added at the THP, the potential functions and interactions of microbial communities were stimulated, especially for Thermobispora and Mycothermus, which prolonged the duration of the THP and expedited the humic acid formation. Simultaneous addition (MEP and THP) significantly altered the microbial community succession and activated the microbes that contributed to the lignocellulases secretion, exhibiting the highest cellobiohydrolase (36.19 ± 3.25 U· g-1 dw) and xylanase (47.51 ± 3.32 U·g-1 dw) activity at the THP. These findings provide new strategies that can be effectively utilized to improve the efficiency and quality of composting.
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Affiliation(s)
- Tuo Li
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, People's Republic of China; Nanjing Agricultural University, Nanjing 210095, Jiangsu, People's Republic of China
| | - Zhijian Kong
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, People's Republic of China; Nanjing Agricultural University, Nanjing 210095, Jiangsu, People's Republic of China
| | - Xiangkai Zhang
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, People's Republic of China; Nanjing Agricultural University, Nanjing 210095, Jiangsu, People's Republic of China
| | - Xudong Wang
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, People's Republic of China; Nanjing Agricultural University, Nanjing 210095, Jiangsu, People's Republic of China
| | - Lifang Chai
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, People's Republic of China; Nanjing Agricultural University, Nanjing 210095, Jiangsu, People's Republic of China
| | - Dongyang Liu
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, People's Republic of China; Nanjing Agricultural University, Nanjing 210095, Jiangsu, People's Republic of China.
| | - Qirong Shen
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, People's Republic of China; Nanjing Agricultural University, Nanjing 210095, Jiangsu, People's Republic of China
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16
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Shen Q, Tang J, Sun H, Yao X, Wu Y, Wang X, Ye S. Straw waste promotes microbial functional diversity and lignocellulose degradation during the aerobic process of pig manure in an ectopic fermentation system via metagenomic analysis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:155637. [PMID: 35513151 DOI: 10.1016/j.scitotenv.2022.155637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 04/24/2022] [Accepted: 04/28/2022] [Indexed: 06/14/2023]
Abstract
This study compares the physicochemical properties, lignocellulose degradation, microbial community composition, and carbohydrate-active enzymes (CAZymes) in ectopic fermentation systems (EFS) of pig manure mixed with either conventional padding (C) or straw waste (A). The degradation rates of cellulose, hemicellulose, and lignin were found to be significantly higher in A (27.72%, 22.72%, and 18.80%, respectively) than in C (21.05%, 16.17%, and 11.69%, respectively) owing to the activities of lignocellulolytic enzymes. Metagenomics revealed that straw addition had a stronger effect on the bacterial community succession than fungi. The abundances of Sphingobacterium, Pseudomonas, and CAZymes were higher in A than in C, as well as the auxiliary activity enzymes, which are crucial for lignocellulose degradation. Redundancy analysis indicates a positive correlation between lignocellulose degradation and Sphingobacterium, Pseudomonas, Bacillus, and Actinobacteria contents. A structural equation model was applied to further verify that the increased microbial functional diversity was the primary driver of lignocellulosic degradation, which could be effectively regulated by the enhanced temperature with straw addition. Replacing traditional padding with straw can thus accelerate lignocellulosic degradation, promote microbial functional diversity, and improve the EFS efficiency.
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Affiliation(s)
- Qi Shen
- Institute of Plant Protection and Microbiology, Zhejiang Academy of Agriculture Science, Hangzhou, Zhejiang, PR China
| | - Jiangwu Tang
- Institute of Plant Protection and Microbiology, Zhejiang Academy of Agriculture Science, Hangzhou, Zhejiang, PR China.
| | - Hong Sun
- Institute of Plant Protection and Microbiology, Zhejiang Academy of Agriculture Science, Hangzhou, Zhejiang, PR China
| | - Xiaohong Yao
- Institute of Plant Protection and Microbiology, Zhejiang Academy of Agriculture Science, Hangzhou, Zhejiang, PR China
| | - Yifei Wu
- Institute of Plant Protection and Microbiology, Zhejiang Academy of Agriculture Science, Hangzhou, Zhejiang, PR China
| | - Xin Wang
- Institute of Plant Protection and Microbiology, Zhejiang Academy of Agriculture Science, Hangzhou, Zhejiang, PR China
| | - Shihao Ye
- College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, PR China
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17
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Ma L, Wang X, Zhou J, Lü X. Degradation of switchgrass by Bacillus subtilis 1AJ3 and expression of a beta-glycoside hydrolase. Front Microbiol 2022; 13:922371. [PMID: 35966659 PMCID: PMC9374367 DOI: 10.3389/fmicb.2022.922371] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2022] [Accepted: 07/11/2022] [Indexed: 11/13/2022] Open
Abstract
Increasing demand for carbon neutrality has led to the development of new techniques and modes of low carbon production. The utilization of microbiology to convert low-cost renewable resources into more valuable chemicals is particularly important. Here, we investigated the ability of a cellulolytic bacterium, Bacillus subtilis 1AJ3, in switchgrass lignocellulose degradation. After 5 days of culture with the strain under 37°C, cellulose, xylan, and acid-insoluble lignin degradation rates were 16.13, 14.24, and 13.91%, respectively. Gas chromatography-mass spectrometry (GC-MS) analysis and field emission scanning electron microscopy (FE-SEM) indicated that the lignin and surface of switchgrass were degraded after incubation with the bacterial strain. Strain 1AJ3 can grow well below 60°C, which satisfies the optimum temperature (50°C) condition of most cellulases; subsequent results emphasize that acid-heat incubation conditions increase the reducing sugar content in a wide range of cellulosic biomass degraded by B. subtilis 1AJ3. To obtain more reducing sugars, we focused on β-glycoside hydrolase, which plays an important role in last steps of cellulose degradation to oligosaccharides. A β-glycoside hydrolase (Bgl-16A) was characterized by cloning and expression in Escherichia coli BL21 and further determined to belong to glycoside hydrolase (GH) 16 family. The Bgl-16A had an enzymatic activity of 365.29 ± 10.43 U/mg, and the enzyme's mode of action was explained by molecular docking. Moreover, the critical influence on temperature (50°C) of Bgl-16A also explained the high-efficiency degradation of biomass by strain under acid-heat conditions. In terms of potential applications, both the strain and the recombinant enzyme showed that coffee grounds would be a suitable and valuable substrate. This study provides a new understanding of cellulose degradation by B. subtilis 1AJ3 that both the enzyme action mode and optimum temperature limitation by cellulases could impact the degradation. It also gave new sight to unique advantage utilization in the industrial production of green manufacturing.
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Affiliation(s)
- Lingling Ma
- Science Center for Future Foods, Jiangnan University, Wuxi, China
- Key Laboratory of Industrial Biotechnology, Ministry of Education and School of Biotechnology, Jiangnan University, Wuxi, China
- Laboratory of Bioresources, College of Food Science and Engineering, Northwest A&F University, Xianyang, China
| | - Xin Wang
- Laboratory of Bioresources, College of Food Science and Engineering, Northwest A&F University, Xianyang, China
| | - Jingwen Zhou
- Science Center for Future Foods, Jiangnan University, Wuxi, China
- Key Laboratory of Industrial Biotechnology, Ministry of Education and School of Biotechnology, Jiangnan University, Wuxi, China
| | - Xin Lü
- Laboratory of Bioresources, College of Food Science and Engineering, Northwest A&F University, Xianyang, China
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