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Paikra SK, Panda J, Sahoo G, Mishra M. Characterization of exopolysaccharide derived from Enterobacter ludwigii and its possible role as an emulsifier. 3 Biotech 2022; 12:212. [PMID: 35959165 PMCID: PMC9357601 DOI: 10.1007/s13205-022-03279-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Accepted: 07/26/2022] [Indexed: 12/01/2022] Open
Abstract
Enterobacter ludwigii is an oral growing bacteria responsible for teeth blackening. It can form biofilm. The exopolysaccharide (EPS) cluster associated with biofilm formation was isolated using ethanol precipitation and the formaldehyde-sodium hydroxide method. The chemical characterization of EPS was done using UV spectroscopy, Fourier transforms infrared spectroscopy, and gas chromatography-mass spectrometry. Energy-dispersive X-ray spectroscopy (EDS) analysis of EPS has revealed the presence of carbon > boron > nitrogen > phosphorous > calcium > sulfur > iron > potassium > magnesium. The carbon content was quite high (72.72-77.63%) in the EPS due to polysaccharide composition. The study showed the presence of different monosaccharides glucose (16.91%), galactose (4.25%), mannose (4.04%), and xylose (8.06%) as the major components of EPS. It appears such as thin filaments with three-dimensional structure, compact, irregular lumps and stacked flakes of polysaccharides. The EPS was also examined using different 1D, 2D Nuclear Magnetic Resonance (NMR) spectroscopy techniques (1H NMR, 13C NMR, 1H-1H COSY, 1H-13C HSQC, 1H-13C HMBC) with different deuterated solvents (Protic and aprotic solvents for exchangeable protons), which showed eight distinguished monomers (seven confirmed by HSQC spectrum and one from 1H spectrum). Semi-crystalline nature and thermal stability were confirmed by X-ray diffractogram and differential scanning calorimetry analysis, respectively. The EPS further shows antioxidant potential in a concentration-dependent manner. It can form a stable emulsion against different edible oil that makes it promising alternative for use in food, and pharmaceutical industries. Supplementary Information The online version contains supplementary material available at 10.1007/s13205-022-03279-z.
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Affiliation(s)
- Sanjeev Kumar Paikra
- Neural Developmental Biology Laboratory, Department of Life Science, National Institute of Technology Rourkela, Sun dergarh, Rourkela, Odisha 769008 India
| | - Jeetendra Panda
- Organocatalysis and Synthesis Laboratory, Department of Chemistry, National Institute of Technology Rourkela, Sundergarh, Rourkela, 769 008 India
| | - Gokarneswar Sahoo
- Organocatalysis and Synthesis Laboratory, Department of Chemistry, National Institute of Technology Rourkela, Sundergarh, Rourkela, 769 008 India
| | - Monalisa Mishra
- Neural Developmental Biology Laboratory, Department of Life Science, National Institute of Technology Rourkela, Sun dergarh, Rourkela, Odisha 769008 India
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Walch H, von der Kammer F, Hofmann T. Freshwater suspended particulate matter-Key components and processes in floc formation and dynamics. WATER RESEARCH 2022; 220:118655. [PMID: 35665676 DOI: 10.1016/j.watres.2022.118655] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2022] [Revised: 05/04/2022] [Accepted: 05/21/2022] [Indexed: 06/15/2023]
Abstract
Freshwater suspended particulate matter (SPM) plays an important role in many biogeochemical cycles and serves multiple ecosystem functions. Most SPM is present as complex floc-like aggregate structures composed of various minerals and organic matter from the molecular to the organism level. Flocs provide habitat for microbes and feed for larger organisms. They constitute microbial bioreactors, with prominent roles in carbon and inorganic nutrient cycles, and transport nutrients as well as pollutants, affecting sediments, inundation zones, and the ocean. Composition, structure, size, and concentration of SPM flocs are subject to high spatiotemporal variability. Floc formation processes and compositional or morphological dynamics can be established around three functional components: phyllosilicates, iron oxides/(oxy)hydroxides (FeOx), and microbial extracellular polymeric substances (EPS). These components and their interactions increase heterogeneity in surface properties, enhancing flocculation. Phyllosilicates exhibit intrinsic heterogeneities in surface charge and hydrophobicity. They are preferential substrates for precipitation or attachment of reactive FeOx. FeOx form patchy coatings on minerals, especially on phyllosilicates, which increase surface charge heterogeneities. Both, phyllosilicates and FeOx strongly adsorb natural organic matter (NOM), preferentially certain EPS. EPS comprise various substances with heterogeneous properties that make them a sticky mixture, enhancing flocculation. Microbial metabolism, and thus EPS release, is supported by the high adsorption capacity and favorable nutrient composition of phyllosilicates, and FeOx supply essential Fe.
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Affiliation(s)
- Helene Walch
- Department of Environmental Geosciences, Centre for Microbiology and Environmental Systems Science, University of Vienna, Josef-Holaubek-Platz 2, UZA II, 1090 Vienna, Austria.
| | - Frank von der Kammer
- Department of Environmental Geosciences, Centre for Microbiology and Environmental Systems Science, University of Vienna, Josef-Holaubek-Platz 2, UZA II, 1090 Vienna, Austria.
| | - Thilo Hofmann
- Department of Environmental Geosciences, Centre for Microbiology and Environmental Systems Science, University of Vienna, Josef-Holaubek-Platz 2, UZA II, 1090 Vienna, Austria.
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Su G, Li S, Deng X, Hu L, Praburaman L, He Z, Zhong H, Sun W. Low concentration of Tween-20 enhanced the adhesion and biofilm formation of Acidianus manzaensis YN-25 on chalcopyrite surface. CHEMOSPHERE 2021; 284:131403. [PMID: 34225118 DOI: 10.1016/j.chemosphere.2021.131403] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Revised: 06/27/2021] [Accepted: 06/28/2021] [Indexed: 06/13/2023]
Abstract
Although Tween-20 was used as an important catalyst to increase chalcopyrite bioleaching rate by acidophiles, the effect of Tween-20 on initial adhesion and biofilm development of acidophiles on chalcopyrite has not been explored until now. Herein, the role of Tween-20 in early attachment behaviors and biofilm development by Acidianus manzaensis strain YN-25 were investigated by adhesion experiments, adhesion force measurement, visualization of biofilm assays and a series of analyses including extended Derjaguin Landau Verwey Overbeek (DLVO) theory, scanning electron microscopy (SEM) and X-ray photoelectron spectroscopy (XPS). The bacterial adhesion experiments showed that 2 mg/L of Tween-20 increased the adhesion percentage (by 8%) of A. manzaensis YN-25. Tween-20 could promote the early adhesion of A. manzaensis YN-25 by changing the Lewis acid-base interaction and electrostatic force to increase total interaction energy and adhesion force. Besides, the functional groups on the surface of cells (carboxyl, hydroxyl and amino functional groups) contributed to the adhesion of A. manzaensis YN-25 on chalcopyrite. Furthermore, the promotion of biofilm formation by Tween-20 was mainly attributed to the reduction of S0 passivation layer formation and complexing more Fe3+ on chalcopyrite surface, contributing to the erosion of chalcopyrite and creating more corrosion pits. Live/dead staining showed low live/dead ratio (ranged from 0.35 to 1.32) during the biofilm development process. This report offers a better understanding of the effects of Tween-20 on attachment and biofilm development of acidophilic microorganisms and would lay a theoretical foundation for the better application of catalyst in bioleaching.
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Affiliation(s)
- Guirong Su
- School of Minerals Processing and Bioengineering, Central South University, Changsha, 410083, China
| | - Shuzhen Li
- School of Minerals Processing and Bioengineering, Central South University, Changsha, 410083, China
| | - Xiaotao Deng
- School of Minerals Processing and Bioengineering, Central South University, Changsha, 410083, China
| | - Liang Hu
- School of Minerals Processing and Bioengineering, Central South University, Changsha, 410083, China
| | - Loganathan Praburaman
- School of Minerals Processing and Bioengineering, Central South University, Changsha, 410083, China
| | - Zhiguo He
- School of Minerals Processing and Bioengineering, Central South University, Changsha, 410083, China; Faculty of Materials Metallurgy & Chemistry, Jiangxi University of Science & Technology, Ganzhou, Jiangxi, 341000, China.
| | - Hui Zhong
- School of Life Sciences, Central South University, Changsha, 410083, China.
| | - Wei Sun
- School of Minerals Processing and Bioengineering, Central South University, Changsha, 410083, China
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Diener M, Adamcik J, Bergfreund J, Catalini S, Fischer P, Mezzenga R. Rigid, Fibrillar Quaternary Structures Induced by Divalent Ions in a Carboxylated Linear Polysaccharide. ACS Macro Lett 2020; 9:115-121. [PMID: 35638668 DOI: 10.1021/acsmacrolett.9b00824] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Polysaccharides are ubiquitous in nature; they serve fundamental roles in vivo and are used for a multitude of food, pharmaceutical, cosmetic biomaterials, and biomedical applications. Here, the structure-property function for low acetylated Gellan gum hydrogels induced by divalent ions was established by means of optical, rheological, and microscopic techniques. The hydrogels interacted with visible light as revealed by birefringence and multiple scattering, as a consequence of quaternary, supramolecular fibrillar structures. The molecular assembly and structure were elucidated by statistical analysis and polymer physics concepts applied to high-resolution AFM height images and further supported by FTIR. This revealed intramolecular coil-to-single helix transitions, followed by lateral aggregation of single helices into rigid, fibrillar quaternary structures, ultimately responsible for gelation of the system. Calcium and magnesium chloride were shown to lead to fibrils up to heights of 6.0 nm and persistence lengths of several micrometers. The change in molecular structure affected the macroscopic gel stiffness, with the plateau shear modulus reaching ∼105 Pa. These results shed light on the two-step gelation mechanism of linear polysaccharides, their conformational molecular changes at the single polymer level and ultimately the macroscale properties of the ensued gels.
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Affiliation(s)
- Michael Diener
- Department of Health Sciences and Technology, ETH Zürich, 8092 Zürich, Switzerland
| | - Jozef Adamcik
- Department of Health Sciences and Technology, ETH Zürich, 8092 Zürich, Switzerland
| | - Jotam Bergfreund
- Department of Health Sciences and Technology, ETH Zürich, 8092 Zürich, Switzerland
| | - Sara Catalini
- Department of Health Sciences and Technology, ETH Zürich, 8092 Zürich, Switzerland
- European Laboratory for Non-Linear Spectroscopy (LENS), Università di Firenze, 50121 Florence, Italy
| | - Peter Fischer
- Department of Health Sciences and Technology, ETH Zürich, 8092 Zürich, Switzerland
| | - Raffaele Mezzenga
- Department of Health Sciences and Technology, ETH Zürich, 8092 Zürich, Switzerland
- Department of Materials, ETH Zürich, 8093 Zürich, Switzerland
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5
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Review of isolation, structural properties, chain conformation, and bioactivities of psyllium polysaccharides. Int J Biol Macromol 2019; 139:409-420. [DOI: 10.1016/j.ijbiomac.2019.08.014] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Revised: 07/25/2019] [Accepted: 08/01/2019] [Indexed: 12/12/2022]
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Affiliation(s)
- Giulio Fittolani
- Department of Biomolecular SystemsMax Planck Institute of Colloids and Interfaces Potsdam Germany
| | - Peter H. Seeberger
- Department of Biomolecular SystemsMax Planck Institute of Colloids and Interfaces Potsdam Germany
- Institute of Chemistry and BiochemistryFreie Universität Berlin Berlin Germany
| | - Martina Delbianco
- Department of Biomolecular SystemsMax Planck Institute of Colloids and Interfaces Potsdam Germany
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Diener M, Adamcik J, Sánchez-Ferrer A, Jaedig F, Schefer L, Mezzenga R. Primary, Secondary, Tertiary and Quaternary Structure Levels in Linear Polysaccharides: From Random Coil, to Single Helix to Supramolecular Assembly. Biomacromolecules 2019; 20:1731-1739. [PMID: 30816699 DOI: 10.1021/acs.biomac.9b00087] [Citation(s) in RCA: 70] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Polysaccharides are ubiquitous in nature and represent an essential class of biopolymers with multiple levels of conformation and structural hierarchy. However, a standardized structural nomenclature, as in the case of proteins, is still lacking due to uncertainty on their hierarchical organization. In this work we use carrageenans as model polysaccharides to demonstrate that several structural levels exist and can be unambiguously resolved by statistical analysis on high resolution Atomic Force Microscopy images, supported by spectroscopic, X-ray scattering and rheological techniques. In direct analogy with proteins, we identify primary, secondary, tertiary and quaternary structures. The structure-property relationship induced by monovalent ions for κ-, ι- and the non-gelling control λ-carrageenan is established from the single chain regime to the occurrence of hydrogels at higher concentrations. For κ-carrageenan in the presence of potassium, a disorder-order transition from random coil to single helix is first observed (secondary structure), followed by intrachain supercoiling events (tertiary structure) and macroscopic anisotropic domains which are parts of a network (quaternary structure) with tunable elasticity up to ∼103 Pa. In contrast, κ-carrageenan in the presence of sodium only produces changes in secondary structure without supercoiling events, prior to formation of gels, highlighting the ion-specificity of the process. Loosely intertwined single helices are observed for ι-carrageenan in the presence of sodium and potassium chloride, providing an elastic mesh with many junction zones, while λ-carrageenan does not undergo any structural change. A generality of the observed behavior may be inferred by extending these observations to a distinct class of polysaccharides, the weak carboxylic polyelectrolyte Gellan gum. These results advance our understanding of ion-specific structural changes of polysaccharides and the physical mechanisms responsible for their gelation.
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Affiliation(s)
- Michael Diener
- Department of Health Sciences and Technology , ETH Zürich , 8092 Zürich , Switzerland
| | - Jozef Adamcik
- Department of Health Sciences and Technology , ETH Zürich , 8092 Zürich , Switzerland
| | - Antoni Sánchez-Ferrer
- Department of Health Sciences and Technology , ETH Zürich , 8092 Zürich , Switzerland
| | - Florian Jaedig
- Department of Health Sciences and Technology , ETH Zürich , 8092 Zürich , Switzerland
| | - Larissa Schefer
- Department of Health Sciences and Technology , ETH Zürich , 8092 Zürich , Switzerland
| | - Raffaele Mezzenga
- Department of Health Sciences and Technology , ETH Zürich , 8092 Zürich , Switzerland.,Department of Materials , ETH Zürich , 8093 Zürich , Switzerland
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8
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Rodriguez S, Torres FG, López D. Preparation and Characterization of Polysaccharide Films from the Cyanobacteria Nostoc commune. ACTA ACUST UNITED AC 2017. [DOI: 10.1177/204124791700800401] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Nostoc Commune bacteria release a variety of polysaccharides into the culture medium during cell growth. In this paper we report, for the first time, the use of these polysaccharides as a raw material for the preparation of biopolymeric films. The structural characterization of the films prepared was assessed by FTIR and 1H-NMR. XRD and thermal analysis tests showed that these films are amorphous and have a glass transition temperature of −25°C. Tensile tests showed that NCP films displayed a similar mechanical behavior in comparison with other natural biopolymer films. These results suggest that these NCP films can be used for the development of new biopolymeric materials with potential applications in the food and biomedical industries.
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Affiliation(s)
- Sol Rodriguez
- Department of Mechanical Engineering, Pontificia Universidad Católica del Perú, Lima 32, Peru
| | - Fernando G. Torres
- Department of Mechanical Engineering, Pontificia Universidad Católica del Perú, Lima 32, Peru
| | - Daniel López
- CSIC, Instituto de Ciencia y Tecnología de Polímeros (ICTP-CSIC), c/ Juan de la Cierva 3, 28006 Madrid, Spain
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9
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Pachekrepapol U, Lucey J, Gong Y, Naran R, Azadi P. Characterization of the chemical structures and physical properties of exopolysaccharides produced by various Streptococcus thermophilus strains. J Dairy Sci 2017; 100:3424-3435. [DOI: 10.3168/jds.2016-12125] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2016] [Accepted: 01/23/2017] [Indexed: 11/19/2022]
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10
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Diao M, Nguyen TA, Taran E, Mahler SM, Nguyen AV. Effect of energy source, salt concentration and loading force on colloidal interactions between Acidithiobacillus ferrooxidans cells and mineral surfaces. Colloids Surf B Biointerfaces 2015; 132:271-80. [DOI: 10.1016/j.colsurfb.2015.05.026] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2015] [Revised: 05/11/2015] [Accepted: 05/14/2015] [Indexed: 11/28/2022]
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11
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Structural characterization and antioxidant activities of polysaccharides from Citrus aurantium L. Int J Biol Macromol 2014; 67:112-23. [DOI: 10.1016/j.ijbiomac.2014.03.004] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2014] [Revised: 02/25/2014] [Accepted: 03/02/2014] [Indexed: 11/24/2022]
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12
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Selenium-enriched exopolysaccharides improve skeletal muscle glucose uptake of diabetic KKAy mice via AMPK pathway. J Physiol Biochem 2014; 70:547-54. [DOI: 10.1007/s13105-014-0334-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2013] [Accepted: 03/20/2014] [Indexed: 11/26/2022]
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13
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Liao N, Chen S, Ye X, Zhong J, Ye X, Yin X, Tian J, Liu D. Structural characterization of a novel glucan from Achatina fulica and its antioxidant activity. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2014; 62:2344-2352. [PMID: 24383933 DOI: 10.1021/jf403896c] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
A novel glucan designated AFPS-IB was purified from Achatina fulica (China white jade snail) by anion-exchange and gel-permeation chromatography. Chemical composition analysis indicated AFPS-IB was composed of glucose, fucose, rhamnose, mannose, and galactose in a molar ratio of 189:2:1:1:2 and with an average molecular weight of 128 kDa. Its structural characteristics were investigated by Fourier transform infrared spectroscopy (FTIR), high performance liquid chromatography (HPLC), gas chromatography mass spectrometry (GC-MS), methylation analysis, nuclear magnetic resonance (NMR) spectroscopy ((1)H,( 13)C, H-H COSY, HSQC, TOCSY, and NOESY), and atomic force microscopy (AFM). The glucan mainly consisted of a backbone of repeating (1→4)-α-d-glucose residues with (1→6)-β-d glucosyl branches at random points on the backbone glucose. Antioxidant studies revealed AFPS-IB showed significant DPPH (2,2-diphenyl-1-picrylhydrazyl) radical, superoxide anion (O2(-)) scavenging activities and high reduction potential. This study suggested that AFPS-IB could be a new source of dietary antioxidants.
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Affiliation(s)
- Ningbo Liao
- College of Biosystem Engineering and Food Science, Zhejiang University , 866 Yuhangtang Road, Hangzhou, 310058 Zhejiang, China
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Separation, structure characterization, conformation and immunomodulating effect of a hyperbranched heteroglycan from Radix Astragali. Carbohydr Polym 2012; 87:667-675. [DOI: 10.1016/j.carbpol.2011.08.045] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2011] [Revised: 08/03/2011] [Accepted: 08/17/2011] [Indexed: 12/15/2022]
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Synthesis, production, and biotechnological applications of exopolysaccharides and polyhydroxyalkanoates by archaea. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL 2011; 2011:693253. [PMID: 22007151 PMCID: PMC3191746 DOI: 10.1155/2011/693253] [Citation(s) in RCA: 138] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/13/2011] [Accepted: 07/11/2011] [Indexed: 11/18/2022]
Abstract
Extreme environments, generally characterized by atypical temperatures, pH, pressure, salinity, toxicity, and radiation levels, are inhabited by various microorganisms specifically adapted to these particular conditions, called extremophiles. Among these, the microorganisms belonging to the Archaea domain are of significant biotechnological importance as their biopolymers possess unique properties that offer insights into their biology and evolution. Particular attention has been devoted to two main types of biopolymers produced by such peculiar microorganisms, that is, the extracellular polysaccharides (EPSs), considered as a protection against desiccation and predation, and the endocellular polyhydroxyalkanoates (PHAs) that provide an internal reserve of carbon and energy. Here, we report the composition, biosynthesis, and production of EPSs and PHAs by different archaeal species.
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Robitzer M, Tourrette A, Horga R, Valentin R, Boissière M, Devoisselle J, Di Renzo F, Quignard F. Nitrogen sorption as a tool for the characterisation of polysaccharide aerogels. Carbohydr Polym 2011. [DOI: 10.1016/j.carbpol.2011.01.040] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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17
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Buthelezi SP, Olaniran AO, Pillay B. Production and characterization of bioflocculants from bacteria isolated from wastewater treatment plant in South Africa. BIOTECHNOL BIOPROC E 2010. [DOI: 10.1007/s12257-009-3002-7] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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18
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Wang Y, Li C, Liu P, Ahmed Z, Xiao P, Bai X. Physical characterization of exopolysaccharide produced by Lactobacillus plantarum KF5 isolated from Tibet Kefir. Carbohydr Polym 2010. [DOI: 10.1016/j.carbpol.2010.06.013] [Citation(s) in RCA: 187] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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19
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Structure characterization of polysaccharide isolated from the fruiting bodies of Tricholoma matsutake. Carbohydr Polym 2010. [DOI: 10.1016/j.carbpol.2010.04.010] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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20
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Wright CJ, Shah MK, Powell LC, Armstrong I. Application of AFM from microbial cell to biofilm. SCANNING 2010; 32:134-49. [PMID: 20648545 DOI: 10.1002/sca.20193] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Atomic Force Microscopy (AFM) has proven itself over recent years as an essential tool for the analysis of microbial systems. This article will review how AFM has been used to study microbial systems to provide unique insight into their behavior and relationship with their environment. Immobilization of live cells has enabled AFM imaging and force measurement to provide understanding of the structure and function of numerous microbial cells. At the macromolecular level AFM investigation into the properties of surface macromolecules and the energies associated with their mechanical conformation and functionality has helped unravel the complex interactions of microbial cells. At the level of the whole cell AFM has provided an integrated analysis of how the microbial cell exploits its environment through its selective, adaptable interface, the cell surface. In addition to these areas of study the AFM investigation of microbial biofilms has been vital for industrial and medical process analysis. There exists a tremendous potential for the future application of AFM to microbial systems and this has been strengthened by the trend to use AFM in combination with other characterization methods, such as confocal microscopy and Raman spectroscopy, to elucidate dynamic cellular processes.
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Affiliation(s)
- Chris J Wright
- Multidisciplinary Nanotechnology Centre, School of Engineering, Swansea University, Swansea, United Kingdom.
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21
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Predicting the chemical composition and structure of Aspergillus nidulans hyphal wall surface by atomic force microscopy. J Microbiol 2010; 48:243-8. [DOI: 10.1007/s12275-010-8094-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2008] [Accepted: 09/25/2009] [Indexed: 10/19/2022]
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22
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Wang Y, Yu L, Zhang J, Xiao J, Wei X. Study on the purification and characterization of a polysaccharide conjugate from tea flowers. Int J Biol Macromol 2010; 47:266-70. [PMID: 20430052 DOI: 10.1016/j.ijbiomac.2010.04.011] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2010] [Revised: 04/16/2010] [Accepted: 04/19/2010] [Indexed: 02/08/2023]
Abstract
In this paper, the crude polysaccharides from the flowers of tea plant (Camellia sinensis) (TFPS) extracted with hot water were fractionated on a DEAE Sepharose FF chromatography to get TFPS1 with a yield of 18%. The properties and chemical compositions of TFPS1 were analyzed with GC, HPGPC, IC, IR methods and its morphology was observed with atomic force microscopy (AFM). The results showed that TFPS1 was a neutral glycoprotein conjugate with a molecular weight 500kDa. The alanine, threonine, glycine, valine, serine, histidine, glutamic acid, histidine and tyrosine were found in TFPS1 and the total content was 2.03%. TFPS1 was consisted of rhamnose, arabinose, mannose, glucose and galactose, with a mole ratio of 1.0:2.9:0.5:1.3:3.3. Sugar backbone of TFPS1 may consist of glucose and galactose, but branched chain may consist of arabinose, galactose and rhamnose. The IR spectrum of TFPS1 revealed the typical characteristics of polysaccharides and protein. TFPS1 was spherical particle structure with a diameter of 50-70nm.
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Affiliation(s)
- Yuanfeng Wang
- Institute of Food Engineering, College of Life & Environment Science, Shanghai Normal University, 100 Guilin Rd, Shanghai 200234, PR China
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23
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Dorobantu LS, Gray MR. Application of atomic force microscopy in bacterial research. SCANNING 2010; 32:74-96. [PMID: 20695026 DOI: 10.1002/sca.20177] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
The atomic force microscope (AFM) has evolved from an imaging device into a multifunctional and powerful toolkit for probing the nanostructures and surface components on the exterior of bacterial cells. Currently, the area of application spans a broad range of interesting fields from materials sciences, in which AFM has been used to deposit patterns of thiol-functionalized molecules onto gold substrates, to biological sciences, in which AFM has been employed to study the undesirable bacterial adhesion to implants and catheters or the essential bacterial adhesion to contaminated soil or aquifers. The unique attribute of AFM is the ability to image bacterial surface features, to measure interaction forces of functionalized probes with these features, and to manipulate these features, for example, by measuring elongation forces under physiological conditions and at high lateral resolution (<1 A). The first imaging studies showed the morphology of various biomolecules followed by rapid progress in visualizing whole bacterial cells. The AFM technique gradually developed into a lab-on-a-tip allowing more quantitative analysis of bacterial samples in aqueous liquids and non-contact modes. Recently, force spectroscopy modes, such as chemical force microscopy, single-cell force spectroscopy, and single-molecule force spectroscopy, have been used to map the spatial arrangement of chemical groups and electrical charges on bacterial surfaces, to measure cell-cell interactions, and to stretch biomolecules. In this review, we present the fascinating options offered by the rapid advances in AFM with emphasizes on bacterial research and provide a background for the exciting research articles to follow.
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Affiliation(s)
- Loredana S Dorobantu
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, Alberta, Canada.
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Marieta C, Ibarburu I, Dueñas M, Irastorza A. Supramolecular structure and conformation of a (1-->3)(1-->2)-beta-D-glucan from Lactobacillus suebicus CUPV221 as observed by tapping mode atomic force microscopy. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2009; 57:6183-6188. [PMID: 19601662 DOI: 10.1021/jf900554c] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Tapping mode atomic force microscopy (TM-AFM) has been used to analyze the supramolecular structure and conformation of the (1-->3)(1-->2)-beta-D-glucan produced by Lactobacillus suebicus CUPV221 isolated from cider. Solutions for TM-AFM observation were prepared by dispersing the solid glucan in distilled water and in alkaline aqueous solutions. It was found that from the distilled water at 10 mg/L or higher concentrations, the (1-->3)(1-->2)-beta-D-glucan forms networks. The heat resistance of the networks depends on the concentration. From the alkaline aqueous solutions, different supramolecular structures were observed depending on the pH. From the weakest alkaline solution, a fairly rough morphology with a high density of spikelike growth features was revealed. As the ionic force of the medium increased, the sizes of the spikelike growth features diminished, and even many disaggregated fibers could be found. At 0.4 M NaOH (pH 13.16), the aggregates had disappeared almost totally. NaOH aqueous solutions (0.1 and 0.4 M) were used to carry out the study of conformation. At 0.1 M NaOH, the aggregates were partially detached, and many free microfibers were found to which a helical conformation could be assigned due to their stiffness and rodlike character. At 0.4 M NaOH, the beginning of the dissociation of the helical structures was seen.
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Affiliation(s)
- Cristina Marieta
- Departamento de Quimica Aplicada, Facultad de Ciencias Quimicas, 20018 Donostia-San Sebastian.
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Huang Z, Zhang L. Chemical structures of water-soluble polysaccharides from Rhizoma Panacis Japonici. Carbohydr Res 2009; 344:1136-40. [PMID: 19410242 DOI: 10.1016/j.carres.2009.02.014] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2008] [Revised: 02/07/2009] [Accepted: 02/19/2009] [Indexed: 12/01/2022]
Abstract
Five polysaccharide samples, coded as RPS1, RPS2, RPS3, RPS4, and RPS5, were isolated stepwise from Rhizoma Panacis Japonici (RPJ) by using 0.15M NaCl aqueous solution at 25 degrees C, boiling water at 120 degrees C, 0.5M NaOH/0.01M NaBH(4) at 10 degrees C, 1.0M NaOH/0.02M NaBH(4) at 10 degrees C, and 19M HCOOH at 4 degrees C, respectively. The yields were 0.39%, 1.08%, 2.41%, 0.32%, and 0.04% for RPS1 to RPS5, respectively. The chemical structures of the polysaccharides were highly branched alpha-(1-->4)-D-glucan heteropolysaccharides and the values of degree of branch (DB) were in the range of 35-45% for RPS1 to RPS5. All of the polysaccharides were water soluble, and their solubility decreased from RPS1 to RPS5. The weight average molecular mass were 3.5 x 10(4), 1.47 x 10(5), 1.24 x 10(6), 9.26 x 10(5), and 1.36 x 10(6) for RPS1 to RPS5, respectively.
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Affiliation(s)
- Zhiping Huang
- Department of Chemistry, Wuhan University, Wuhan 430072, China
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26
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Use of atomic force microscopy and transmission electron microscopy for correlative studies of bacterial capsules. Appl Environ Microbiol 2008; 74:5457-65. [PMID: 18606791 DOI: 10.1128/aem.02075-07] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Bacteria can possess an outermost assembly of polysaccharide molecules, a capsule, which is attached to their cell wall. We have used two complementary, high-resolution microscopy techniques, atomic force microscopy (AFM) and transmission electron microscopy (TEM), to study bacterial capsules of four different gram-negative bacterial strains: Escherichia coli K30, Pseudomonas aeruginosa FRD1, Shewanella oneidensis MR-4, and Geobacter sulfurreducens PCA. TEM analysis of bacterial cells using different preparative techniques (whole-cell mounts, conventional embeddings, and freeze-substitution) revealed capsules for some but not all of the strains. In contrast, the use of AFM allowed the unambiguous identification of the presence of capsules on all strains used in the present study, including those that were shown by TEM to be not encapsulated. In addition, the use of AFM phase imaging allowed the visualization of the bacterial cell within the capsule, with a depth sensitivity that decreased with increasing tapping frequency.
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Nichols PD, Mancuso Nichols CA. Microbial signature lipid profiling and exopolysaccharides: Experiences initiated with Professor David C White and transported to Tasmania, Australia. J Microbiol Methods 2008; 74:33-46. [PMID: 17669527 DOI: 10.1016/j.mimet.2007.06.017] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2007] [Accepted: 06/27/2007] [Indexed: 12/01/2022]
Abstract
Developments and applications with signature lipid and exopolysaccharide (EPS) methodologies covering a thirty year period in the DC White laboratories at Florida State University and the University of Tennessee at Knoxville are illustrated. These powerful techniques were used to gain new insight into microbial communities, not obtainable by classical approaches. Selected case examples are highlighted and include: use of a specific dimethyl disulphide (DMDS) derivitization procedure with monounsaturated fatty acids (MUFA) to precisely determine double bond position and geometry; application of the DMDS procedure in taxonomic and environmental studies including the degradation of pollutant halogenated hydrocarbons in groundwater and subsurface aquifers; exploiting the ubiquitous nature of uronic acids in microbial EPS to quantify these exopolymers in complex environmental samples; development of rapid and non-destructive approaches including FT-IR to follow biofilm formation in a unique manner not possible with other approaches. The foundations laid in the DC White laboratories have seen a wide suite of applications in modern microbial ecology and associated fields. The training of young scientists by DC White will also ensure that his unique approach and quest for new and or novel methodologies for use in environmental microbiology will continue.
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Affiliation(s)
- Peter D Nichols
- CSIRO Marine and Atmospheric Research, CSIRO Food Futures Flagship, GPO Box 1538, Hobart, Tasmania 7000, Australia.
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Sletmoen M, Stokke BT. Higher order structure of (1,3)-beta-D-glucans and its influence on their biological activities and complexation abilities. Biopolymers 2008; 89:310-21. [PMID: 18186085 DOI: 10.1002/bip.20920] [Citation(s) in RCA: 120] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
(1,3)-beta-D-Glucans form a group of biologically active biopolymers that exist in different structural organizations depending on the environmental conditions. The biological effect of (1,3)-beta-D-glucans is a core issue stimulating large research efforts of the molecular properties and their consequences for action as biological response modifiers. The fascination for these molecules increased further following the finding of their ability to form complexes of defined geometry with a number of structures, ranging from linear architectures as polymers or carbon nanotubes, to globular structures as gold particles or dye molecules. The fascinating information concerning the relationship between sample treatment history and molecular organization has not yet reached out to all the contributors within the field, resulting in unnecessary apparent inconsistencies in the literature. In addition to environmental conditions, the sample history is known to influence on the precise structural organization of these molecules. The present knowledge related to the structure of native as well as denatured, renatured and annealed (1,3)-beta-D-glucans is reviewed. The influence of their structural organization on the biological activity and complexation abilities is discussed, and some factors hindering progress in the understanding of their biological effects or complexation abilities are pointed out.
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Affiliation(s)
- Marit Sletmoen
- Biophysics and Medical Technology, Department of Physics, The Norwegian University of Science and Technology, NTNU, Trondheim, Norway
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Hsu KL, Gildersleeve JC, Mahal LK. A simple strategy for the creation of a recombinant lectin microarray. MOLECULAR BIOSYSTEMS 2008; 4:654-62. [PMID: 18493664 DOI: 10.1039/b800725j] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Glycomics, i.e. the high-throughput analysis of carbohydrates, has yet to reach the level of ease and import of its counterparts, genomics and proteomics, due to the difficulties inherent in carbohydrate analysis. The advent of lectin microarray technology addresses many of these problems, providing a straightforward approach for glycomic analysis. However, current microarrays are limited to the available lectin set, which consists mainly of plant lectins isolated from natural sources. These lectins have inherent problems including inconsistent activity and availability. Also, many plant lectins are glycosylated, complicating glycomic evaluation of complex samples, which may contain carbohydrate-binding proteins. The creation of a recombinant, well-defined lectin set would resolve many of these issues. Herein, we describe an efficient strategy for the systematic creation of recombinant lectins for use in microarray technology. We present a small panel of simple-to-purify bacterially-derived lectins that show reliable activity and define their binding specificities by both carbohydrate microarray and ELISA. We utilize this panel to create a recombinant lectin microarray that is able to distinguish glycopatterns for both proteins and cell samples. This work opens the door to the establishment of a vast set of defined lectins via high-throughout approaches, advancing lectin microarray technology for glycomic analysis.
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Affiliation(s)
- Ku-Lung Hsu
- Department of Chemistry and Biochemistry, University of Texas at Austin, 1 University Station, A5300, Austin, TX 78712-0265, USA
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Abstract
Rapid evaluation of microbial cell-surface carbohydrates is essential to understanding the mechanisms by which bacteria use glycans to establish pathogenic or symbiotic relationships. Microbial glycan analysis is complicated both by the vast diversity of possible carbohydrate structures and by their dynamic nature. Bacteria can rapidly alter their glycan coats by switching the genes that are involved on and off in a phase-variable manner. Currently, there is a lack of appropriate tools for studying dynamic carbohydrate alterations. Here, we present a lectin microarray protocol for the high-throughput evaluation of cell-surface microbial sugars. The binding patterns of fluorescent bacteria to these arrays provide a simple means to fingerprint bacteria based on their surface carbohydrates. In addition, this method provides a rapid, parallel evaluation of glycans from multiple bacterial samples, allowing dynamic changes in carbohydrate structures to be studied. The entire procedure takes approximately 12 h but the printing of the microarray can be performed in advance.
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Affiliation(s)
- Ku-Lung Hsu
- Department of Chemistry and Biochemistry, University of Texas at Austin, 1 University Station, A5300, Austin, Texas 78712-0265, USA
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31
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Hsu KL, Pilobello KT, Mahal LK. Analyzing the dynamic bacterial glycome with a lectin microarray approach. Nat Chem Biol 2006; 2:153-7. [PMID: 16462751 DOI: 10.1038/nchembio767] [Citation(s) in RCA: 185] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2005] [Accepted: 01/13/2006] [Indexed: 11/09/2022]
Abstract
Glycosylation of bacterial cell surfaces is emerging as a critical factor in symbiosis, pathogenesis, cell-cell interactions and immune evasion. The lack of high-throughput analytical tools to examine bacterial glycans has been a major obstacle to the field and has hindered closer examination of the dynamics of carbohydrate variation. We have recently developed a lectin microarray for the analysis of glycoproteins. Herein we present a rapid analytical system based on this technology for the examination of bacterial glycans. The glycosylation pattern observed distinguishes closely related Escherichia coli strains from one another, providing a facile means of fingerprinting bacteria. In addition, dynamic alterations in the carbohydrate coat of a pathogenic E. coli strain are readily observed. The fast evaluation of real-time alterations in surface-carbohydrate epitopes allows examination of the dynamic role of bacterial sugars in response to external stimuli such as the immune system.
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Affiliation(s)
- Ku-Lung Hsu
- Department of Chemistry and Biochemistry, Center for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, 1 University Station, A5300, Austin, Texas 78712-0265, USA
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Spagnoli C, Korniakov A, Ulman A, Balazs EA, Lyubchenko YL, Cowman MK. Hyaluronan conformations on surfaces: effect of surface charge and hydrophobicity. Carbohydr Res 2005; 340:929-41. [PMID: 15780258 DOI: 10.1016/j.carres.2005.01.024] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2004] [Accepted: 01/20/2005] [Indexed: 11/20/2022]
Abstract
Extended, relaxed, condensed, and interacting forms of the polysaccharide hyaluronan have been observed by atomic force microscopy (AFM). The types of images obtained depend on the properties of the surfaces used. We have investigated several different surface conditions for HA imaging, including unmodified mica, mica chemically modified with two different kinds of amino-terminated silanes (3-aminopropyltriethoxysilane and N-trimethoxysilylpropyl-N,N,N-trimethylammonium chloride), and highly oriented pyrolytic graphite. We found the degree of HA molecular extension or condensation to be variable, and the number of bound chains per unit area was low, for all of the mica-based surfaces. HA was more easily imaged on graphite, a hydrophobic surface. Chains were frequently observed in high degrees of extension, maintained by favorable interaction with the surface after molecular combing. This observation suggests that the HA macromolecule interacts with graphite through hydrophobic patches along its surface. AFM studies of HA behavior on differing surfaces under well-controlled environmental conditions provides useful insight into the variety of conformations and interactions likely to be found under differing physiological conditions.
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Affiliation(s)
- Chiara Spagnoli
- Othmer Department of Chemical and Biological Sciences and Engineering, Polytechnic University, 6 Metrotech Center, Brooklyn, NY 11201, USA
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Ruas-Madiedo P, de los Reyes-Gavilán CG. Invited Review: Methods for the Screening, Isolation, and Characterization of Exopolysaccharides Produced by Lactic Acid Bacteria. J Dairy Sci 2005; 88:843-56. [PMID: 15738217 DOI: 10.3168/jds.s0022-0302(05)72750-8] [Citation(s) in RCA: 242] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
The ability to produce exopolysaccharides (EPS) is widespread among lactic acid bacteria (LAB), although the physiological role of these molecules has not been clearly established yet. Some EPS confer on LAB a "ropy" character that can be detected in cultures that form long strands when extended with an inoculation loop. When EPS are produced in situ during milk fermentation they can act as natural biothickeners, giving the product a suitable consistency, improving viscosity, and reducing syneresis. In addition, some of these EPS may have beneficial effects on human health. The increasing demand by consumers of novel dairy products requires a better understanding of the effect of EPS on existing products and, at the same time, the search for new EPS-producing strains with desirable properties. The use of genetically modified organisms capable of producing high levels of EPS or newly designed biopolymers is still very limited. Therefore, exploration of the biodiversity of wild LAB strains from natural ecological environments is currently the most suitable approach to search for the desired EPS-phenotype. The screening of ropy strains and the isolation and characterization of EPS responsible for this characteristic have led to the application over the past years of a wide variety of techniques. This review summarizes the available information on methods and procedures used for research on this topic. The information provided deals with methods for screening of EPS-producing LAB, detection of the ropy phenotype, and the physicochemical and structural characterization of these molecules, including parameters related to their viscosifying properties. To our knowledge, this is the first compilation of methods available for the study of EPS produced by LAB.
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Affiliation(s)
- P Ruas-Madiedo
- Instituto de Productos Lácteos de Asturias, CSIC, Carretera de Infiesto s/n, 33300 Villaviciosa, Asturias, Spain.
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