1
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Tang J, Zuo W, Guo L, Han Z, Yang C, Han B, Dai L, Zhang X, Zhou X. Synergistic pectin deconstruction is a prerequisite for mutualistic interactions between honeybee gut bacteria. Nat Commun 2024; 15:6937. [PMID: 39138170 PMCID: PMC11322527 DOI: 10.1038/s41467-024-51365-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Accepted: 08/02/2024] [Indexed: 08/15/2024] Open
Abstract
The honeybee gut microbiome is crucial for degrading diverse pollen glycans. Yet it is unclear how this process shapes the interactions among bacteria. Here, we demonstrate a conditional mutualistic interaction between strains of two honeybee gut bacteria Bifidobacterium asteroides and Gilliamella apicola. When co-occurring in vitro and in vivo, Bifidobacterium provides complementary demethylation service to promote Gilliamella growth on methylated homogalacturonan, an enriched polysaccharide of pectin. In exchange, Gilliamella shares digestive products with Bifidobacterium, through which a positive interaction is established. This positive interaction vanishes when Bifidobacterium is not required on a non-methylated diet. Results from biochemical and gene expression analyses combined with model simulation further suggest that the ratio change of the two major homogalacturonan breakdown products, galacturonic acid (GalA) and di-GalA, determines the bacterial interaction. This study unravels how glycan metabolism may shape the interactions between honeybee gut bacteria.
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Affiliation(s)
- Junbo Tang
- College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, China
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China
- Sanya Institute of China Agricultural University, Hainan, China
| | - Wenlong Zuo
- CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Lizhen Guo
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China
- Sanya Institute of China Agricultural University, Hainan, China
| | - Zhihao Han
- Department of Biomedical Engineering, School of Engineering, China Pharmaceutical University, Nanjing, China
| | - Chengfeng Yang
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China
- Sanya Institute of China Agricultural University, Hainan, China
| | - Benfeng Han
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China
- Department of Microbiology and Immunology, College of Biological Science, China Agricultural University, Beijing, China
| | - Lei Dai
- CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
- University of Chinese Academy of Sciences, Beijing, China.
| | - Xue Zhang
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China.
| | - Xin Zhou
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China.
- Sanya Institute of China Agricultural University, Hainan, China.
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2
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Qin Z, Yan C, Yang K, Wang Q, Wang Z, Gou C, Feng H, Jin Q, Dai X, Maitikadir Z, Hao H, Wang L. Genome-wide identification of walnut (Juglans regia) PME gene family members and expression analysis during infection with Cryptosphaeria pullmanensis pathogens. Genomics 2024; 116:110860. [PMID: 38776985 DOI: 10.1016/j.ygeno.2024.110860] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2024] [Revised: 05/14/2024] [Accepted: 05/18/2024] [Indexed: 05/25/2024]
Abstract
Walnuts exhibit a higher resistance to diseases, though they are not completely immune. This study focuses on the Pectin methylesterase (PME) gene family to investigate whether it is involved in disease resistance in walnuts. These 21 genes are distributed across 12 chromosomes, with four pairs demonstrating homology. Variations in conserved motifs and gene structures suggest diverse functions within the gene family. Phylogenetic and collinear gene pairs of the PME family indicate that the gene family has evolved in a relatively stable way. The cis-acting elements and gene ontology enrichment of these genes, underscores their potential role in bolstering walnuts' defense mechanisms. Transcriptomic analyses were conducted under conditions of Cryptosphaeria pullmanensis infestation and verified by RT-qPCR. The results showed that certain JrPME family genes were activated in response, leading to the hypothesis that some members may confer resistance to the disease.
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Affiliation(s)
- Ze Qin
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Chengcai Yan
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Kaiying Yang
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Qinpeng Wang
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Zhe Wang
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Changqing Gou
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Hongzu Feng
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Qiming Jin
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Xianxing Dai
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Zulihumar Maitikadir
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Haiting Hao
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China.
| | - Lan Wang
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China.
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3
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Hocq L, Habrylo O, Sénéchal F, Voxeur A, Pau-Roblot C, Safran J, Fournet F, Bassard S, Battu V, Demailly H, Tovar JC, Pilard S, Marcelo P, Savary BJ, Mercadante D, Njo MF, Beeckman T, Boudaoud A, Gutierrez L, Pelloux J, Lefebvre V. Mutation of AtPME2, a pH-Dependent Pectin Methylesterase, Affects Cell Wall Structure and Hypocotyl Elongation. PLANT & CELL PHYSIOLOGY 2024; 65:301-318. [PMID: 38190549 DOI: 10.1093/pcp/pcad154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Revised: 10/13/2023] [Accepted: 12/04/2023] [Indexed: 01/10/2024]
Abstract
Pectin methylesterases (PMEs) modify homogalacturonan's chemistry and play a key role in regulating primary cell wall mechanical properties. Here, we report on Arabidopsis AtPME2, which we found to be highly expressed during lateral root emergence and dark-grown hypocotyl elongation. We showed that dark-grown hypocotyl elongation was reduced in knock-out mutant lines as compared to the control. The latter was related to the decreased total PME activity as well as increased stiffness of the cell wall in the apical part of the hypocotyl. To relate phenotypic analyses to the biochemical specificity of the enzyme, we produced the mature active enzyme using heterologous expression in Pichia pastoris and characterized it through the use of a generic plant PME antiserum. AtPME2 is more active at neutral compared to acidic pH, on pectins with a degree of 55-70% methylesterification. We further showed that the mode of action of AtPME2 can vary according to pH, from high processivity (at pH8) to low processivity (at pH5), and relate these observations to the differences in electrostatic potential of the protein. Our study brings insights into how the pH-dependent regulation by PME activity could affect the pectin structure and associated cell wall mechanical properties.
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Affiliation(s)
- Ludivine Hocq
- UMRT INRAE 1158 BioEcoAgro-BIOPI Plant Biology and Innovation, University of Picardie, 33 Rue St Leu, Amiens 80039, France
| | - Olivier Habrylo
- UMRT INRAE 1158 BioEcoAgro-BIOPI Plant Biology and Innovation, University of Picardie, 33 Rue St Leu, Amiens 80039, France
| | - Fabien Sénéchal
- UMRT INRAE 1158 BioEcoAgro-BIOPI Plant Biology and Innovation, University of Picardie, 33 Rue St Leu, Amiens 80039, France
| | - Aline Voxeur
- UMRT INRAE 1158 BioEcoAgro-BIOPI Plant Biology and Innovation, University of Picardie, 33 Rue St Leu, Amiens 80039, France
| | - Corinne Pau-Roblot
- UMRT INRAE 1158 BioEcoAgro-BIOPI Plant Biology and Innovation, University of Picardie, 33 Rue St Leu, Amiens 80039, France
| | - Josip Safran
- UMRT INRAE 1158 BioEcoAgro-BIOPI Plant Biology and Innovation, University of Picardie, 33 Rue St Leu, Amiens 80039, France
| | - Françoise Fournet
- UMRT INRAE 1158 BioEcoAgro-BIOPI Plant Biology and Innovation, University of Picardie, 33 Rue St Leu, Amiens 80039, France
| | - Solène Bassard
- UMRT INRAE 1158 BioEcoAgro-BIOPI Plant Biology and Innovation, University of Picardie, 33 Rue St Leu, Amiens 80039, France
| | - Virginie Battu
- Plant Reproduction and Development Laboratory, ENS de Lyon UMR 5667, BP 7000, Lyon cedex 07 69342, France
| | - Hervé Demailly
- Molecular Biology Platform (CRRBM), University of Picardie, 33 Rue St Leu, Amiens 80039, France
| | - José C Tovar
- Arkansas Biosciences Institute, Arkansas State University, PO Box 600, Jonesboro, AR 72467, USA
| | - Serge Pilard
- Analytical Platform (PFA), University of Picardie, 33 Rue St Leu, Amiens 80039, France
| | - Paulo Marcelo
- Cellular imaging and protein analysis platform (ICAP), University of Picardie, Avenue Laënnec,CHU Sud, CURS, Amiens cedex 1 80054, France
| | - Brett J Savary
- Arkansas Biosciences Institute, Arkansas State University, PO Box 600, Jonesboro, AR 72467, USA
| | - Davide Mercadante
- School of Chemical Sciences, The University of Auckland, Private Bag 92019, Auckland 1142, New Zealand
| | - Maria Fransiska Njo
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium
- VIB Center for Plant Systems Biology, Ghent 9052, Belgium
| | - Tom Beeckman
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium
- VIB Center for Plant Systems Biology, Ghent 9052, Belgium
| | - Arezki Boudaoud
- Hydrodynamics Laboratory, Ecole Polytechnique, Route de Saclay, Palaiseau 91128, France
| | - Laurent Gutierrez
- Molecular Biology Platform (CRRBM), University of Picardie, 33 Rue St Leu, Amiens 80039, France
| | - Jérôme Pelloux
- UMRT INRAE 1158 BioEcoAgro-BIOPI Plant Biology and Innovation, University of Picardie, 33 Rue St Leu, Amiens 80039, France
| | - Valérie Lefebvre
- UMRT INRAE 1158 BioEcoAgro-BIOPI Plant Biology and Innovation, University of Picardie, 33 Rue St Leu, Amiens 80039, France
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4
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Kamel H, Geitmann A. Strength in numbers: An isoform variety of homogalacturonan modifying enzymes may contribute to pollen tube fitness. PLANT PHYSIOLOGY 2023; 194:67-80. [PMID: 37819032 DOI: 10.1093/plphys/kiad544] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Revised: 09/12/2023] [Accepted: 09/15/2023] [Indexed: 10/13/2023]
Abstract
Pectin is a major component of the cell wall in land plants. It plays crucial roles in cell wall assembly, cell growth, shaping, and signaling. The relative abundance of pectin in the cell wall is particularly high in rapidly growing organ regions and cell types. Homogalacturonan (HG), a polymer of 1,4-linked α-D-galacturonic acid, is a major pectin constituent in growing and dividing plant cells. In pollen tubes, an extremely rapidly growing cell type, HG is secreted at and inserted into the apical cell wall and is subject to further modification in muro by HG modifying enzymes (HGMEs). These enzymes, including pectin esterases and depolymerases, have multiple isoforms, some of which are specifically expressed in pollen. Given the importance of pectin chemistry for the fitness of pollen tubes, it is of interest to interrogate the potentially crucial roles these isoforms play in pollen germination and elongation. It is hypothesized that different HGME isoforms, through their action on apoplastic HG, may generate differential methylation and acetylation patterns endowing HG polysaccharides with specific, spatially and temporally varying properties that lead to a fine-tuned pattern of cell wall modification. In addition, these isoforms may be differentially activated and/or inhibited depending on the local conditions that may vary at subcellular resolution. In this Update we review the different HGME isoforms identified in recent years in Arabidopsis thaliana and postulate that the multiplicity of these isoforms may allow for specialized substrate recognition and conditional activation, leading to a sophisticated regulation scheme exemplified in the process that governs the dynamic properties of the cell wall in pollen tube growth.
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Affiliation(s)
- Hiba Kamel
- Department of Plant Science, Faculty of Agricultural and Environmental Sciences, McGill University, Sainte-Anne-de-Bellevue, Quebec H9X 3V9, Canada
| | - Anja Geitmann
- Department of Plant Science, Faculty of Agricultural and Environmental Sciences, McGill University, Sainte-Anne-de-Bellevue, Quebec H9X 3V9, Canada
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5
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Leso M, Kokla A, Feng M, Melnyk CW. Pectin modifications promote haustoria development in the parasitic plant Phtheirospermum japonicum. PLANT PHYSIOLOGY 2023; 194:229-242. [PMID: 37311199 PMCID: PMC10762509 DOI: 10.1093/plphys/kiad343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Revised: 05/12/2023] [Accepted: 05/13/2023] [Indexed: 06/15/2023]
Abstract
Parasitic plants are globally prevalent pathogens with important ecological functions but also potentially devastating agricultural consequences. Common to all parasites is the formation of the haustorium which requires parasite organ development and tissue invasion into the host. Both processes involve cell wall modifications. Here, we investigated a role for pectins during haustorium development in the facultative parasitic plant Phtheirospermum japonicum. Using transcriptomics data from infected Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa), we identified genes for multiple P. japonicum pectin methylesterases (PMEs) and their inhibitors (PMEIs) whose expression was upregulated by haustoria formation. Changes in PME and PMEI expression were associated with tissue-specific modifications in pectin methylesterification. While de-methylesterified pectins were present in outer haustorial cells, highly methylesterified pectins were present in inner vascular tissues, including the xylem bridge that connects parasite to host. Specifically blocking xylem bridge formation in the haustoria inhibited several PME and PMEI genes from activating. Similarly, inhibiting PME activity using chemicals or by overexpressing PMEI genes delayed haustoria development. Our results suggest a dynamic and tissue-specific regulation of pectin contributes to haustoria initiation and to the establishment of xylem connections between parasite and host.
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Affiliation(s)
- Martina Leso
- Department of Plant Biology, Linnean Center for Plant Biology, Swedish University of Agricultural Sciences, Almas allé 5, 756 51 Uppsala, Sweden
| | - Anna Kokla
- Department of Plant Biology, Linnean Center for Plant Biology, Swedish University of Agricultural Sciences, Almas allé 5, 756 51 Uppsala, Sweden
| | - Ming Feng
- Department of Plant Biology, Linnean Center for Plant Biology, Swedish University of Agricultural Sciences, Almas allé 5, 756 51 Uppsala, Sweden
| | - Charles W Melnyk
- Department of Plant Biology, Linnean Center for Plant Biology, Swedish University of Agricultural Sciences, Almas allé 5, 756 51 Uppsala, Sweden
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Rocha VDD, Dal'Sasso TCDS, Dal-Bianco M, Oliveira LOD. Genome-wide survey and evolutionary history of the pectin methylesterase (PME) gene family in the Dothideomycetes class of fungi. Fungal Genet Biol 2023; 169:103841. [PMID: 37797717 DOI: 10.1016/j.fgb.2023.103841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 09/06/2023] [Accepted: 10/03/2023] [Indexed: 10/07/2023]
Abstract
Once deposited in the plant cell wall, pectin undergoes demethylesterification by endogenous pectin methylesterases (PMEs), which play various roles in growth and development, including defense against pathogen attacks. Pathogen PMEs can alter pectin's methylesterification pattern, increasing its susceptibility to degradation by other fungal pectinases and thus playing a critical role as virulence factors during early infection stages. To investigate the evolutionary history of PMEs in the Dothideomycetes class of fungi, we obtained genomic data from 15 orders (79 species) and added genomic data from 61 isolates of Corynespora cassiicola. Our analyses involved maximum likelihood phylogenies, gene genealogies, and selection analyses. Additionally, we measured PME gene expression levels of C. cassiicola using soybean as a host through RT-qPCR assays. We recovered 145 putative effector PMEs and 57 putative non-effector PMEs from across the Dothideomycetes. The PME gene family exhibits a small size (up to 5 members per genome) and comprises three major clades. The evolutionary patterns of the PME1 and PME2 clades were largely shaped by duplications and recurring gene retention events, while biased gene loss characterized the small-sized PME3 clade. The presence of five members in the PME gene family of C. cassiicola suggests that the family may play a key role in the evolutionary success of C. cassiicola as a polyphagous plant pathogen. The haplogroups Cc_PME1.1 and Cc_PME1.2 exhibited an accelerated rate of evolution, whereas Cc_PME2.1, Cc_PME2.2, and Cc_PME2.3 seem to be under strong purifying selective constraints. All five PME genes were expressed during infection of soybean leaves, with the highest levels during from six to eight days post-inoculation. The highest relative expression level was measured for CC_29_g7533, a member of the Cc_PME2.3 clade, while the remaining four genes had relatively lower levels of expression.
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Affiliation(s)
| | | | - Maximiller Dal-Bianco
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal de Viçosa, Viçosa, Brazil
| | - Luiz Orlando de Oliveira
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal de Viçosa, Viçosa, Brazil.
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Wang Y, Zhang D, Huang L, Zhang Z, Shi Q, Hu J, He G, Guo X, Shi H, Liang L. Uncovering the interactions between PME and PMEI at the gene and protein levels: Implications for the design of specific PMEI. J Mol Model 2023; 29:286. [PMID: 37610510 DOI: 10.1007/s00894-023-05644-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Accepted: 06/30/2023] [Indexed: 08/24/2023]
Abstract
CONTEXT Pectin methylesterase inhibitor (PMEI) can specifically bind and inhibit the activity of pectin methylesterase (PME), which has been widely used in fruit and vegetable juice processing. However, the limited three-dimensional structure, unclear action mechanism, low thermal stability and biological activity of PMEI severely limited its application. In this work, molecular recognition and conformational changes of PME and PMEI were analyzed by various molecular simulation methods. Then suggestions were proposed for improving thermal stability and affinity maturation of PMEI through semi-rational design. METHODS Phylogenetic trees of PME and PMEI were established using the Maximum likelihood (ML) method. The results show that PME and PMEI have good sequence and structure conservation in various plants, and the simulated data can be widely adopted. In this work, MD simulations were performed using AMBER20 package and ff14SB force field. Protein interaction analysis indicates that H-bonds, van der Waals forces, and the salt bridge formed of K224 with ID116 are the main driving forces for mutual molecular recognition of PME and PMEI. According to the analyses of free energy landscape (FEL), conformational cluster, and motion, the association with PMEI greatly disrupts PME's dispersed functional motion mode and biological function. By monitoring the changes of residue contact number and binding free energy, IG35M/ IG35R: IT93F and IT113W/ IT113W: ID116W mutations contribute to thermal stability and affinity maturation of the PME-PMEI complex system, respectively. This work reveals the interaction between PME and PMEI at the gene and protein levels and provides options for modifying specific PMEI.
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Affiliation(s)
- Yueteng Wang
- Key Laboratory of Medicinal and Edible Plants Resources Development of Sichuan Education Department, School of Pharmacy, Chengdu University, Chengdu, 610106, China
| | - Derong Zhang
- School of Marxism, Chengdu Vocational & Technical College of Industry, Chengdu, 610081, China
| | - Lifen Huang
- Key Laboratory of Medicinal and Edible Plants Resources Development of Sichuan Education Department, School of Pharmacy, Chengdu University, Chengdu, 610106, China
| | - Zelan Zhang
- Key Laboratory of Medicinal and Edible Plants Resources Development of Sichuan Education Department, School of Pharmacy, Chengdu University, Chengdu, 610106, China
| | - Quanshan Shi
- Key Laboratory of Medicinal and Edible Plants Resources Development of Sichuan Education Department, School of Pharmacy, Chengdu University, Chengdu, 610106, China
| | - Jianping Hu
- Key Laboratory of Medicinal and Edible Plants Resources Development of Sichuan Education Department, School of Pharmacy, Chengdu University, Chengdu, 610106, China
| | - Gang He
- Key Laboratory of Medicinal and Edible Plants Resources Development of Sichuan Education Department, School of Pharmacy, Chengdu University, Chengdu, 610106, China
| | - Xiaoqiang Guo
- Key Laboratory of Medicinal and Edible Plants Resources Development of Sichuan Education Department, School of Pharmacy, Chengdu University, Chengdu, 610106, China
| | - Hang Shi
- Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou, 213001, China.
| | - Li Liang
- Key Laboratory of Medicinal and Edible Plants Resources Development of Sichuan Education Department, School of Pharmacy, Chengdu University, Chengdu, 610106, China.
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8
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Kumar R, Meghwanshi GK, Marcianò D, Ullah SF, Bulone V, Toffolatti SL, Srivastava V. Sequence, structure and functionality of pectin methylesterases and their use in sustainable carbohydrate bioproducts: A review. Int J Biol Macromol 2023; 244:125385. [PMID: 37330097 DOI: 10.1016/j.ijbiomac.2023.125385] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 06/08/2023] [Accepted: 06/12/2023] [Indexed: 06/19/2023]
Abstract
Pectin methylesterases (PMEs) are enzymes that play a critical role in modifying pectins, a class of complex polysaccharides in plant cell walls. These enzymes catalyze the removal of methyl ester groups from pectins, resulting in a change in the degree of esterification and consequently, the physicochemical properties of the polymers. PMEs are found in various plant tissues and organs, and their activity is tightly regulated in response to developmental and environmental factors. In addition to the biochemical modification of pectins, PMEs have been implicated in various biological processes, including fruit ripening, defense against pathogens, and cell wall remodelling. This review presents updated information on PMEs, including their sources, sequences and structural diversity, biochemical properties and function in plant development. The article also explores the mechanisms of PME action and the factors influencing enzyme activity. In addition, the review highlights the potential applications of PMEs in various industrial sectors related to biomass exploitation, food, and textile industries, with a focus on development of bioproducts based on eco-friendly and efficient industrial processes.
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Affiliation(s)
- Rajender Kumar
- Division of Glycoscience, Department of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, AlbaNova University Center, 106 91 Stockholm, Sweden
| | | | - Demetrio Marcianò
- Department of Agricultural and Environmental Sciences, University of Milan, 20133 Milan, Italy
| | - Sadia Fida Ullah
- Division of Glycoscience, Department of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, AlbaNova University Center, 106 91 Stockholm, Sweden
| | - Vincent Bulone
- Division of Glycoscience, Department of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, AlbaNova University Center, 106 91 Stockholm, Sweden; College of Medicine and Public Health, Flinders University, Bedford Park, 5042, South Australia, Australia
| | - Silvia Laura Toffolatti
- Department of Agricultural and Environmental Sciences, University of Milan, 20133 Milan, Italy
| | - Vaibhav Srivastava
- Division of Glycoscience, Department of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, AlbaNova University Center, 106 91 Stockholm, Sweden.
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9
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Kumar R, Kumar S, Bulone V, Srivastava V. Biochemical Characterization and Molecular Insights into Substrate Recognition of Pectin Methylesterase from Phytophthora Infestans. Comput Struct Biotechnol J 2022; 20:6023-6032. [PMID: 36382180 PMCID: PMC9647417 DOI: 10.1016/j.csbj.2022.11.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Revised: 11/01/2022] [Accepted: 11/01/2022] [Indexed: 11/06/2022] Open
Abstract
Pectin methylesterases (PMEs) are a class of carbohydrate-active enzymes that act on the O6-methyl ester groups of the homogalacturonan component of pectins, resulting in de-esterification of the substrate polymers and formation of pectate and methanol. PMEs occur in higher plants and microorganisms, including fungi, oomycetes, bacteria, and archaea. Microbial PMEs play a crucial role in pathogens’ invasion of plant tissues. Here, we have determined the structural and functional properties of Pi-PME, a PME from the oomycete plant pathogen Phytophthora infestans. This enzyme exhibits maximum activity at alkaline pH (8.5) and is active over a wide temperature range (25–50 °C). In silico determination of the structure of Pi-PME reveals that the protein consists essentially of three parallel β-sheets interconnected by loops that adopt an overall β-helix organization. The loop regions in the vicinity of the active site are extended compared to plant and fungal PMEs, but they are shorter than the corresponding bacterial and insect regions. Molecular dynamic simulations revealed that Pi-PME interacts most strongly with partially de-methylated homogalacturonans, suggesting that it preferentially uses this type of substrates. The results are compared and discussed with other known PMEs from different organisms, highlighting the specific features of Pi-PME.
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Affiliation(s)
- Rajender Kumar
- Division of Glycoscience, Department of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, AlbaNova University Center, 106 91 Stockholm, Sweden
| | - Sanjiv Kumar
- Division of Glycoscience, Department of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, AlbaNova University Center, 106 91 Stockholm, Sweden
| | - Vincent Bulone
- Division of Glycoscience, Department of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, AlbaNova University Center, 106 91 Stockholm, Sweden
- College of Medicine and Public Health, Flinders University, Bedford Park Campus, Sturt Road, South Australia 5042, Australia
| | - Vaibhav Srivastava
- Division of Glycoscience, Department of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, AlbaNova University Center, 106 91 Stockholm, Sweden
- Corresponding author.
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10
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Sun J, Tian Z, Li X, Li S, Li Z, Wang J, Hu Z, Chen H, Guo C, Xie M, Xu R. Systematic analysis of the pectin methylesterase gene family in Nicotiana tabacum and reveal their multiple roles in plant development and abiotic stresses. FRONTIERS IN PLANT SCIENCE 2022; 13:998841. [PMID: 36247564 PMCID: PMC9554592 DOI: 10.3389/fpls.2022.998841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Accepted: 09/05/2022] [Indexed: 06/16/2023]
Abstract
The pectin methylesterases (PMEs) play multiple roles in regulating plant development and responses to various stresses. In our study, a total of 121 PME genes were identified in the tobacco genome, which were clustered into two groups based on phylogenetic analysis together with Arabidopsis members. The investigations of gene structure and conserved motif indicated that exon/intron and motif organizations were relatively conserved in each group. Additionally, several stress-related elements were identified in the promoter region of these genes. The survey of duplication events revealed that segmental duplications were critical to the expansion of the PME gene family in tobacco. The expression profiles analysis revealed that these genes were expressed in various tissues and could be induced by diverse abiotic stresses. Notably, NtPME029 and NtPME043, were identified as homologues with AtPME3 and AtPME31, respectively. Furthermore, NtPME029 was highly expressed in roots and the over-expression of the NtPME029 gene could promote the development of roots. While NtPME043 could be induced by salt and ABA treatments, and the over-expression of the NtPME043 gene could significantly enhance the salt-stress tolerance in tobacco. Overall, these findings may shed light on the biological and functional characterization of NtPME genes in tobacco.
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Affiliation(s)
- Jinhao Sun
- Technology Center, China Tobacco Jiangsu Industrial Co., Ltd., Nanjing, China
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, China
| | - Zhen Tian
- Technology Center, China Tobacco Jiangsu Industrial Co., Ltd., Nanjing, China
| | - Xiaoxu Li
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, China
| | - Shaopeng Li
- Technology Center, China Tobacco Jiangsu Industrial Co., Ltd., Nanjing, China
| | - Zhiyuan Li
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, China
| | - Jinling Wang
- Technology Center, China Tobacco Jiangsu Industrial Co., Ltd., Nanjing, China
| | - Zongyu Hu
- Technology Center, China Tobacco Jiangsu Industrial Co., Ltd., Nanjing, China
| | - Haiqing Chen
- Technology Center, China Tobacco Jiangsu Industrial Co., Ltd., Nanjing, China
| | - Cun Guo
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, China
- Kunming Branch of Yunnan Provincial Tobacco Company, Kunming, China
| | - Minmin Xie
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, China
| | - Ruyan Xu
- Technology Center, China Tobacco Jiangsu Industrial Co., Ltd., Nanjing, China
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11
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Ge W, Chen H, Zhang Y, Feng S, Wang S, Shang Q, Wu M, Li Z, Zhang L, Guo H, Jin Y, Wang X. Integrative genomics analysis of the ever-shrinking pectin methylesterase (PME) gene family in foxtail millet ( Setaria italica). FUNCTIONAL PLANT BIOLOGY : FPB 2022; 49:874-886. [PMID: 35781367 DOI: 10.1071/fp21319] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2021] [Accepted: 06/10/2022] [Indexed: 05/26/2023]
Abstract
Pectin methylesterase (PME) plays a vital role in the growth and development of plants. Their genes can be classified into two types, with Type-1 having an extra domain, PMEI. PME genes in foxtail millet (Setaria italica L.) have not been identified, and their sequence features and evolution have not been explored. Here, we identified 41 foxtail millet PME genes. Decoding the pro-region, containing the PMEI domain, revealed its more active nature than the DNA encoding PME domain, easier to be lost to produce Type-2 PME genes. We inferred that the active nature of the pro-region could be related to its harbouring more repetitive DNA sequences. Further, we revealed that though whole-genome duplication and tandem duplication contributed to producing new copies of PME genes, phylogenetic analysis provided clear evidence of ever-shrinking gene family size in foxtail millet and the other grasses in the past 100 million years. Phylogenetic analysis also supports the existence of two gene groups, Group I and Group II, with genes in Group II being more conservative. Our research contributes to understanding how DNA sequence structure affects the functional innovation and evolution of PME genes.
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Affiliation(s)
- Weina Ge
- School of Life Sciences, North China University of Science and Technology, Tangshan 063210, China
| | - Huilong Chen
- School of Life Sciences, North China University of Science and Technology, Tangshan 063210, China; and School of Information Science and Technology, Yanching Institute of Technology, Langfang 065000, Hebei, China
| | - Yingchao Zhang
- School of Life Sciences, North China University of Science and Technology, Tangshan 063210, China
| | - Shuyan Feng
- School of Life Sciences, North China University of Science and Technology, Tangshan 063210, China
| | - Shuailei Wang
- School of Life Sciences, North China University of Science and Technology, Tangshan 063210, China
| | - Qian Shang
- School of Life Sciences, North China University of Science and Technology, Tangshan 063210, China
| | - Meng Wu
- School of Life Sciences, North China University of Science and Technology, Tangshan 063210, China
| | - Ziqi Li
- School of Life Sciences, North China University of Science and Technology, Tangshan 063210, China
| | - Lan Zhang
- School of Life Sciences, North China University of Science and Technology, Tangshan 063210, China
| | - He Guo
- School of Life Sciences, North China University of Science and Technology, Tangshan 063210, China
| | - Yongchao Jin
- College of Science, North China University of Science and Technology, Tangshan 063210, China
| | - Xiyin Wang
- School of Life Sciences, North China University of Science and Technology, Tangshan 063210, China
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12
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Zhong L, Wang X, Fan L, Ye X, Li Z, Cui Z, Huang Y. Characterization of an acidic pectin methylesterase from Paenibacillus xylanexedens and its application in fruit processing. Protein Expr Purif 2020; 179:105798. [PMID: 33232801 DOI: 10.1016/j.pep.2020.105798] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Revised: 11/12/2020] [Accepted: 11/17/2020] [Indexed: 10/22/2022]
Abstract
A pectinase-producing bacterial isolate, identified as Paenibacillus xylanexedens SZ 29, was screened by using the soil dilution plate with citrus pectin and congo red. A pectin methylesterase gene (Pxpme) was cloned and expressed in Escherichia coli. The gene coded for a protein with 334 amino acids and a calculated molecular mass of 36.76 kDa. PxPME showed the highest identity of 32.4% with the characterized carbohydrate esterase family 8 pectin methylesterase from Daucus carota. The recombined PxPME showed a specific activity with 39.38 U/mg against citrus pectin with >65% methylesterification. The optimal pH and temperature for PxPME activity were 5.0 and 45 °C. Its Km and Vmax value were determined to be 1.43 mg/mL and 71.5 μmol/mg·min, respectively. Moreover, PxPME could increase the firmness of pineapple cubes by 114% when combined with CaCl2. The acidic and mesophilic properties make PxPME a potential candidate for application in the fruit processing.
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Affiliation(s)
- Lingli Zhong
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xiaowen Wang
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Lin Fan
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xianfeng Ye
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Zhoukun Li
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Zhongli Cui
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Yan Huang
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China; Key Laboratory of Microbial Resource Collection and Preservation, Ministry of Agriculture and Rural Affairs, Beijing, 100081, China.
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13
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Reem NT, Chambers L, Zhang N, Abdullah SF, Chen Y, Feng G, Gao S, Soto-Burgos J, Pogorelko G, Bassham DC, Anderson CT, Walley JW, Zabotina OA. Post-Synthetic Reduction of Pectin Methylesterification Causes Morphological Abnormalities and Alterations to Stress Response in Arabidopsis thaliana. PLANTS 2020; 9:plants9111558. [PMID: 33198397 PMCID: PMC7697075 DOI: 10.3390/plants9111558] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Revised: 11/03/2020] [Accepted: 11/09/2020] [Indexed: 11/16/2022]
Abstract
Pectin is a critical component of the plant cell wall, supporting wall biomechanics and contributing to cell wall signaling in response to stress. The plant cell carefully regulates pectin methylesterification with endogenous pectin methylesterases (PMEs) and their inhibitors (PMEIs) to promote growth and protect against pathogens. We expressed Aspergillus nidulans pectin methylesterase (AnPME) in Arabidopsis thaliana plants to determine the impacts of methylesterification status on pectin function. Plants expressing AnPME had a roughly 50% reduction in methylester content compared with control plants. AnPME plants displayed a severe dwarf phenotype, including small, bushy rosettes and shorter roots. This phenotype was caused by a reduction in cell elongation. Cell wall composition was altered in AnPME plants, with significantly more arabinose and significantly less galacturonic acid, suggesting that plants actively monitor and compensate for altered pectin content. Cell walls of AnPME plants were more readily degraded by polygalacturonase (PG) alone but were less susceptible to treatment with a mixture of PG and PME. AnPME plants were insensitive to osmotic stress, and their susceptibility to Botrytis cinerea was comparable to wild type plants despite their compromised cell walls. This is likely due to upregulated expression of defense response genes observed in AnPME plants. These results demonstrate the importance of pectin in both normal growth and development, and in response to biotic and abiotic stresses.
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Affiliation(s)
- Nathan T. Reem
- Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA; (N.T.R.); (L.C.); (N.Z.); (S.F.A.); (G.P.)
| | - Lauran Chambers
- Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA; (N.T.R.); (L.C.); (N.Z.); (S.F.A.); (G.P.)
| | - Ning Zhang
- Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA; (N.T.R.); (L.C.); (N.Z.); (S.F.A.); (G.P.)
| | - Siti Farah Abdullah
- Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA; (N.T.R.); (L.C.); (N.Z.); (S.F.A.); (G.P.)
| | - Yintong Chen
- Department of Biology, The Pennsylvania State University, University Park, PA 16802, USA; (Y.C.); (G.F.); (C.T.A.)
| | - Guanhua Feng
- Department of Biology, The Pennsylvania State University, University Park, PA 16802, USA; (Y.C.); (G.F.); (C.T.A.)
| | - Song Gao
- Department of Plant Pathology & Microbiology, Iowa State University, Ames, IA 50011, USA; (S.G.); (J.W.W.)
| | - Junmarie Soto-Burgos
- Department of Genetics, Development & Cell Biology, Iowa State University, Ames, IA 50011, USA; (J.S.-B.); (D.C.B.)
| | - Gennady Pogorelko
- Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA; (N.T.R.); (L.C.); (N.Z.); (S.F.A.); (G.P.)
| | - Diane C. Bassham
- Department of Genetics, Development & Cell Biology, Iowa State University, Ames, IA 50011, USA; (J.S.-B.); (D.C.B.)
| | - Charles T. Anderson
- Department of Biology, The Pennsylvania State University, University Park, PA 16802, USA; (Y.C.); (G.F.); (C.T.A.)
| | - Justin W. Walley
- Department of Plant Pathology & Microbiology, Iowa State University, Ames, IA 50011, USA; (S.G.); (J.W.W.)
| | - Olga A. Zabotina
- Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA; (N.T.R.); (L.C.); (N.Z.); (S.F.A.); (G.P.)
- Correspondence: ; Tel.: +1-515-294-6125
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Gholizadeh A. Pectin methylesterase activity of plant DUF538 protein superfamily. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2020; 26:829-839. [PMID: 32255943 PMCID: PMC7113335 DOI: 10.1007/s12298-020-00763-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2019] [Revised: 12/21/2019] [Accepted: 01/14/2020] [Indexed: 06/11/2023]
Abstract
DUF538 (domain of unknown function 538) proteins are known as a group of putative hypothetical proteins in a wide range of plant species. They have been identified from some plants challenged with various environmental stresses. However, a little is known about their functional properties. They have been newly predicted to have binding capacity and esterase-type hydrolytic activity towards bacterial lipopolysaccharides and chlorophyll molecules as carboxylic compounds in plants. In the present study, the binding ability and the methylesterase activity of DUF538 proteins towards pectin molecules were also predicted. Their similarities to pectin methylesterases and their binding ability to pectin molecule were predicted using bioinformatic tools as well as the experimental method. A probable cooperation was speculated between DUF538 and pectin methylesterase protein families in cell wall associated defense responses in plants.
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Affiliation(s)
- Ashraf Gholizadeh
- Research Institute for Fundamental Sciences, University of Tabriz, Tabriz, Iran
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15
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Wen B, Zhang F, Wu X, Li H. Characterization of the Tomato ( Solanum lycopersicum) Pectin Methylesterases: Evolution, Activity of Isoforms and Expression During Fruit Ripening. FRONTIERS IN PLANT SCIENCE 2020; 11:238. [PMID: 32194610 PMCID: PMC7063471 DOI: 10.3389/fpls.2020.00238] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Accepted: 02/17/2020] [Indexed: 06/01/2023]
Abstract
Pectin methylesterase (PME, EC 3.1.1.11) is a hydrolytic enzyme of pectin that plays multiple roles in different plant development processes and responses to biotic stress. To characterize the molecular evolution and functional divergence of the PME gene family, a genome-wide analysis of the PME gene family in the tomato was performed. In total, 57 non-redundant PME genes were identified, and these PME genes were divided into five groups based on their phylogeneny; their classification was supported by similar gene structures and domain distributions. The PME genes were found to be unevenly distributed among 12 chromosomes of the tomato. In addition, 11 segmental duplication and 11 tandem duplication events occurred in these PME genes, implying that both contributed to the expansion of the tomato PME gene family. Non-synonymous/synonymous mutation ratio analysis revealed that positive selection played a key role in the functional divergence of PME genes. Interspecific collinear analysis indicated a large divergence in the PME gene family after the divergence of monocot and dicot plants in ancient times. Gene expression pattern analysis suggested that PMEs plays roles in the different parts of the tomato plant, including the fruit. Three newly identified candidate genes (Solyc03g083360, Solyc07g071600, and Solyc12g098340) may have functions during fruit ripening. Immunoassays suggested that the tomato isoform PE1 and PE2 may change pectin structure at cell junctions, which could be associated with fruit softening. In addition, our analysis indicate that two undescribed PE isoforms might be active in leaves and fruits. This study increases our understanding of the PME gene family in the tomato and may facilitate further functional analyses to elucidate PME function, especially during fruit ripening.
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16
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Zhang P, Wang H, Qin X, Chen K, Zhao J, Zhao Y, Yue B. Genome-wide identification, phylogeny and expression analysis of the PME and PMEI gene families in maize. Sci Rep 2019; 9:19918. [PMID: 31882640 PMCID: PMC6934449 DOI: 10.1038/s41598-019-56254-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2019] [Accepted: 12/05/2019] [Indexed: 01/09/2023] Open
Abstract
Pectins, the major components of cell walls in plants, are synthesized and secreted to cell walls as highly methyl-esterified polymers and then demethyl-esterified by pectin methylesterases (PMEs). The PMEs are spatially regulated by pectin methylesterase inhibitors (PMEIs). In this study, 43 and 49 putative PME and PMEI genes were identified in maize, respectively. Gene structure and motif analysis revealed that members in the same paralogous pairs or in the same subgroup generally had common motif compositions and gene structure patterns, which indicates functional similarity between the closely related ZmPME/PMEI genes. Gene ontology annotation analysis showed that most of the ZmPME/PMEI genes are involved in cell wall modification and pectin catabolic process with molecular functions of pectinesterase or pectinesterase inhibitor activities. There are 35 ZmPME/PMEI genes expressed higher in anthers than in other tissues from the NimbleGen maize microarray data, and the semiq-RT-PCR assay revealed most of these ZmPME/PMEIs specially expressed in anthers and pollens, indicating they possibly had role in anther and pollen development. In addition, these ZmPME/PMEI genes were highly expressed in the fertile anthers, while lowly or no expressed in sterile anthers. This further indicated these genes might be involved in the development of anther and pollen.
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Affiliation(s)
- Panpan Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Hao Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Xiner Qin
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Kuan Chen
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Jiuran Zhao
- Beijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China
| | - Yanxin Zhao
- Beijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
| | - Bing Yue
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.
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17
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Kanungo A, Bag BP. Structural insights into the molecular mechanisms of pectinolytic enzymes. ACTA ACUST UNITED AC 2019. [DOI: 10.1007/s42485-019-00027-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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18
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Recombinant Tk0522, a carbohydrate esterase homologue from Thermococcus kodakarensis, does not require a signal sequence for translocation to periplasmic space in Escherichia coli. Biologia (Bratisl) 2019. [DOI: 10.2478/s11756-019-00243-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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A pistil-expressed pectin methylesterase confers cross-incompatibility between strains of Zea mays. Nat Commun 2019; 10:2304. [PMID: 31127100 PMCID: PMC6534598 DOI: 10.1038/s41467-019-10259-0] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2019] [Accepted: 04/29/2019] [Indexed: 11/08/2022] Open
Abstract
A central problem in speciation is the origin and mechanisms of reproductive barriers that block gene flow between sympatric populations. Wind-pollinated plant species that flower in synchrony with one another rely on post-pollination interactions to maintain reproductive isolation. In some locations in Mexico, sympatric populations of domesticated maize and annual teosinte grow in intimate associate and flower synchronously, but rarely produce hybrids. This trait is typically conferred by a single haplotype, Teosinte crossing barrier1-s. Here, we show that the Teosinte crossing barrier1-s haplotype contains a pistil-expressed, potential speciation gene, encoding a pectin methylesterase homolog. The modification of the pollen tube cell wall by the pistil, then, is likely a key mechanism for pollen rejection in Zea and may represent a general mechanism for reproductive isolation in grasses. Domesticated maize and some varieties of wild teosinte grow in close proximity in parts of Mexico but rarely cross-fertilize. Here the authors show that a pistil-expressed pectin methylesterase, encoded by a gene within the Teosinte crossing barrier1-s haplotype, prevents fertilization of these teosintes by incompatible pollen.
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Cheong MS, Lee DY, Seo KH, Choi GH, Song YH, Park KH, Kim JH. Phenylephrine, a small molecule, inhibits pectin methylesterases. Biochem Biophys Res Commun 2019; 508:320-325. [DOI: 10.1016/j.bbrc.2018.11.117] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2018] [Accepted: 11/19/2018] [Indexed: 11/25/2022]
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Namara LM, Griffin CT, Fitzpatrick D, Kavanagh K, Carolan JC. The effect of entomopathogenic fungal culture filtrate on the immune response and haemolymph proteome of the large pine weevil, Hylobius abietis. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY 2018; 101:1-13. [PMID: 30026094 DOI: 10.1016/j.ibmb.2018.07.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Revised: 06/25/2018] [Accepted: 07/14/2018] [Indexed: 06/08/2023]
Abstract
The large pine weevil Hylobius abietis L. is a major forestry pest in 15 European countries, where it is a threat to 3.4 million hectares of forest. A cellular and proteomic analysis of the effect of culture filtrate of three entomopathogenic fungi (EPF) species on the immune system of H. abietis was performed. Injection with Metarhizium brunneum or Beauvaria bassiana culture filtrate facilitated a significantly increased yeast cell proliferation in larvae. Larvae co-injected with either Beauvaria caledonica or B. bassiana culture filtrate and Candida albicans showed significantly increased mortality. Together these results suggest that EPF culture filtrate has the potential to modulate the insect immune system allowing a subsequent pathogen to proliferate. Injection with EPF culture filtrate was shown to alter the abundance of protease inhibitors, detoxifing enzymes, antimicrobial peptides and proteins involved in reception/detection and development in H. abietis larvae. Larvae injected with B. caledonica culture filtrate displayed significant alterations in abundance of proteins involved in cellulolytic and other metabolic processes in their haemolymph proteome. Screening EPF for their ability to modulate the insect immune response represents a means of assessing EPF for use as biocontrol agents, particularly if the goal is to use them in combination with other control agents.
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Affiliation(s)
- Louise Mc Namara
- Department of Biology, Maynooth University, Maynooth, Co. Kildare, Ireland; Teagasc, Oak Park, Crop Research Centre, Co. Carlow, Ireland.
| | | | - David Fitzpatrick
- Department of Biology, Maynooth University, Maynooth, Co. Kildare, Ireland
| | - Kevin Kavanagh
- Department of Biology, Maynooth University, Maynooth, Co. Kildare, Ireland
| | - James C Carolan
- Department of Biology, Maynooth University, Maynooth, Co. Kildare, Ireland
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22
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Yue X, Lin S, Yu Y, Huang L, Cao J. The putative pectin methylesterase gene, BcMF23a, is required for microspore development and pollen tube growth in Brassica campestris. PLANT CELL REPORTS 2018; 37:1003-1009. [PMID: 29644403 DOI: 10.1007/s00299-018-2285-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Accepted: 03/28/2018] [Indexed: 05/24/2023]
Abstract
BcMF23a contributes to pollen wall development via influencing intine construction, which, in turn, influences pollen tube growth. Pollen wall, the morphological out face of pollen, surrounds male gametophyte and plays an important role in plant reproduction. Pectin methylesterases (PMEs) are involved in pollen wall construction by de-esterifying pectin of the intine. In this study, the function of a putative pectin methylesterase gene, Brassica campestris Male Fertility 23a (BcMF23a), was investigated. Knockdown of BcMF23a by artificial microRNA (amiRNA) technology resulted in abnormal pollen intine formation outside of the germinal furrows at the binucleate stage. At the trinucleate stage, 20.69% of pollen possessed the degradation of nuclei, cytoplasm and the intine, resulting in shrunken pollen, whereas the remaining 75.86% were wall-disrupted with degrading cytoplasm and broken exine inside the germinal furrows. In addition, pollen abortion in transgenic plants caused germination percentage reduction by 19% in vitro and pollen tube growth disruption in natural stigma in vivo. Taken together, BcMF23a is involved in pollen development and pollen tube growth, possibly via participating in intine construction. This study may contribute towards understanding the function of pollen-specific PMEs and the molecular regulatory network of pollen wall development.
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Affiliation(s)
- Xiaoyan Yue
- Laboratory of Cell and Molecular Biology, Institute of Vegetable Science, Zhejiang University, Hangzhou, 310058, China
| | - Sue Lin
- Institute of Life Sciences, Wenzhou University, Wenzhou, 325000, China
| | - Youjian Yu
- College of Agriculture and Food Science, Zhejiang A & F University, Lin'an, 311300, Zhejiang, China
| | - Li Huang
- Laboratory of Cell and Molecular Biology, Institute of Vegetable Science, Zhejiang University, Hangzhou, 310058, China
| | - Jiashu Cao
- Laboratory of Cell and Molecular Biology, Institute of Vegetable Science, Zhejiang University, Hangzhou, 310058, China.
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Molecular Mechanisms Affecting Cell Wall Properties and Leaf Architecture. THE LEAF: A PLATFORM FOR PERFORMING PHOTOSYNTHESIS 2018. [DOI: 10.1007/978-3-319-93594-2_8] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/09/2022]
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Goulao LF, Fernandes JC, Amâncio S. How the Depletion in Mineral Major Elements Affects Grapevine ( Vitis vinifera L.) Primary Cell Wall. FRONTIERS IN PLANT SCIENCE 2017; 8:1439. [PMID: 28871267 PMCID: PMC5566972 DOI: 10.3389/fpls.2017.01439] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2017] [Accepted: 08/03/2017] [Indexed: 05/29/2023]
Abstract
The noteworthy fine remodeling that plant cell walls (CWs) undergo to adapt to developmental, physiological and environmental cues and the observation that its composition and dynamics differ between species represents an opportunity to couple crop species agronomic studies with research on CW modifications. Vitis vinifera is one of the most important crops from an economic point-of-view due to the high value of the fruit, predominantly for winemaking. The availability of some information related to this species' CWs allows researching its responses to imposed conditions that affect the plant's development. Mineral deficiency, in particular nitrogen, phosphorus, potassium and sulfur, strongly affects plant metabolism, reducing both growth and crop yield. Despite the importance of mineral nutrition in development, its influence on CW synthesis and modifications is still insufficiently documented. Addressing this knowledge gap, V. vinifera experimental models were used to study CW responses to imposed mineral depletion in unorganized (callus) and organized (shoots) tissues. The discussion of the obtained results is the main focus of this review. Callus and shoots submitted to mineral restriction are impaired in specific CW components, predominantly cellulose. Reorganization on structure and deposition of several other polymers, in particular the degree and pattern of pectin methyl-esterification and the amount of xyloglucan (XyG), arabinan and extensin, is also observed. In view of recently proposed CW models that consider biomechanical hotspots and direct linkages between pectins and XyG/cellulose, the outcome of these modifications in explaining maintenance of CW integrity through compensatory stiffening can be debated. Nutrient stresses do not affect evenly all tissues with undifferentiated callus tissues showing more pronounced responses, followed by shoot mature internodes, and then newly formed internodes. The impact of nitrogen depletion leads to more noticeable responses, supporting this nutrient's primary role in plant development and metabolism. The consequential compensatory mechanisms highlight the pivotal role of CW in rearranging under environmental stresses.
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Owen J, Kent L, Ralet MC, Cameron R, Williams M. A tale of two pectins: Diverse fine structures can result from identical processive PME treatments on similar high DM substrates. Carbohydr Polym 2017; 168:365-373. [DOI: 10.1016/j.carbpol.2017.03.039] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2016] [Revised: 03/06/2017] [Accepted: 03/11/2017] [Indexed: 10/20/2022]
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Geng X, Horst WJ, Golz JF, Lee JE, Ding Z, Yang ZB. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017; 90:491-504. [PMID: 28181322 DOI: 10.1111/tpj.13506] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2016] [Revised: 01/22/2017] [Accepted: 01/25/2017] [Indexed: 05/24/2023]
Abstract
A major factor determining aluminium (Al) sensitivity in higher plants is the binding of Al to root cell walls. The Al binding capacity of cell walls is closely linked to the extent of pectin methylesterification, as the presence of methyl groups attached to the pectin backbone reduces the net negative charge of this polymer and hence limits Al binding. Despite recent progress in understanding the molecular basis of Al resistance in a wide range of plants, it is not well understood how the methylation status of pectin is mediated in response to Al stress. Here we show in Arabidopsis that mutants lacking the gene LEUNIG_HOMOLOG (LUH), a member of the Groucho-like family of transcriptional co-repressor, are less sensitive to Al-mediated repression of root growth. This phenotype is correlated with increased levels of methylated pectin in the cell walls of luh roots as well as altered expression of cell wall-related genes. Among the LUH-repressed genes, PECTIN METHYLESTERASE46 (PME46) was identified as reducing Al binding to cell walls and hence alleviating Al-induced root growth inhibition by decreasing PME enzyme activity. seuss-like2 (slk2) mutants responded to Al in a similar way as luh mutants suggesting that a LUH-SLK2 complex represses the expression of PME46. The data are integrated into a model in which it is proposed that PME46 is a major inhibitor of pectin methylesterase activity within root cell walls.
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Affiliation(s)
- Xiaoyu Geng
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, Jinan, 250100, China
| | - Walter J Horst
- Institute of Plant Nutrition, Leibniz Universität Hannover, Herrenhaeuser Str. 2, Hannover, 30419, Germany
| | - John F Golz
- School of BioSciences, University of Melbourne, Victoria, 3010, Australia
| | - Joanne E Lee
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, SE-901 87, Sweden
| | - Zhaojun Ding
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, Jinan, 250100, China
| | - Zhong-Bao Yang
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, Jinan, 250100, China
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27
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Li W, Shang H, Ge Q, Zou C, Cai J, Wang D, Fan S, Zhang Z, Deng X, Tan Y, Song W, Li P, Koffi PK, Jamshed M, Lu Q, Gong W, Li J, Shi Y, Chen T, Gong J, Liu A, Yuan Y. Genome-wide identification, phylogeny, and expression analysis of pectin methylesterases reveal their major role in cotton fiber development. BMC Genomics 2016; 17:1000. [PMID: 27927181 PMCID: PMC5142323 DOI: 10.1186/s12864-016-3365-z] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2016] [Accepted: 12/02/2016] [Indexed: 01/02/2023] Open
Abstract
BACKGROUND Pectin methylesterase (PME, EC 3.1.1.11) is a hydrolytic enzyme that utilizes pectin as substrates, and plays a significant role in regulating pectin reconstruction thereby regulating plant growth. Pectin is one of the important components of the plant cell wall, which forms the main structural material of cotton fiber. In this research, cotton genome information was used to identify PMEs. RESULTS We identified 80 (GaPME01-GaPME80) PME genes from diploid G. arboreum (A genome), 78 (GrPME01-GrPME78) PME genes from G. raimondii (D genome), and 135 (GhPME001-GhPME135) PME genes from tetraploid cotton G. hirsutum (AD genome). We further analyzed their gene structure, conserved domain, gene expression, and systematic evolution to lay the foundation for deeper research on the function of PMEs. Phylogenetic data indicated that members from the same species demonstrated relatively high sequence identities and genetic similarities. Analysis of gene structures showed that most of the PMEs genes had 2-3 exons, with a few having a variable number of exons from 4 to 6. There are nearly no differences in the gene structure of PMEs among the three (two diploid and one tetraploid) cotton species. Selective pressure analysis showed that the Ka/Ks value for each of the three cotton species PME families was less than one. CONCLUSION Conserved domain analysis showed that PMEs members had a relatively conserved C-terminal pectinesterase domain (PME) while the N-terminus was less conserved. Moreover, some of the family members contained a pectin methylesterase inhibitor (PMEI) domain. The Ka/Ks ratios suggested that the duplicated PMEs underwent purifying selection after the duplication events. This study provided an important basis for further research on the functions of cotton PMEs. Results from qRT-PCR indicated that the expression level of different PMEs at various fiber developmental stages was different. Moreover, some of the PMEs showed fiber predominant expression in secondary wall thickening indicating tissue-specific expression patterns.
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Affiliation(s)
- Weijie Li
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China.,State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, College of Life Science, Henan University, Kaifeng, 475004, China
| | - Haihong Shang
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Qun Ge
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Changsong Zou
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Juan Cai
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Daojie Wang
- State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, College of Life Science, Henan University, Kaifeng, 475004, China
| | - Senmiao Fan
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Zhen Zhang
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Xiaoying Deng
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Yunna Tan
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Weiwu Song
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Pengtao Li
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Palanga Kibalou Koffi
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Muhammad Jamshed
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Quanwei Lu
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Wankui Gong
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Junwen Li
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Yuzhen Shi
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Tingting Chen
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Juwu Gong
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Aiying Liu
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Youlu Yuan
- State Key Laboratory of Cotton Biology, Key Laboratory of biological and genetic breeding of cotton, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China.
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28
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Zega A, D'Ovidio R. Genome-wide characterization of pectin methyl esterase genes reveals members differentially expressed in tolerant and susceptible wheats in response to Fusarium graminearum. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2016; 108:1-11. [PMID: 27393991 DOI: 10.1016/j.plaphy.2016.06.033] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2016] [Revised: 06/27/2016] [Accepted: 06/27/2016] [Indexed: 05/20/2023]
Abstract
Pectin methyl esterase (PME) genes code for enzymes that are involved in structural modifications of the plant cell wall during plant growth and development. They are also involved in plant-pathogen interaction. PME genes belong to a multigene family and in this study we report the first comprehensive analysis of the PME gene family in bread wheat (Triticum aestivum L.). Like in other species, the members of the TaPME family are dispersed throughout the genome and their encoded products retain the typical structural features of PMEs. qRT-PCR analysis showed variation in the expression pattern of TaPME genes in different tissues and revealed that these genes are mainly expressed in flowering spikes. In our attempt to identify putative TaPME genes involved in wheat defense, we revealed a strong variation in the expression of the TaPME following Fusarium graminearum infection, the causal agent of Fusarium head blight (FHB). Particularly interesting was the finding that the expression profile of some PME genes was markedly different between the FHB-resistant wheat cultivar Sumai3 and the FHB-susceptible cultivar Bobwhite, suggesting a possible involvement of these PME genes in FHB resistance. Moreover, the expression analysis of the TaPME genes during F. graminearum progression within the spike revealed those genes that responded more promptly to pathogen invasion.
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Affiliation(s)
- Alessandra Zega
- Dipartimento di Scienze Agrarie e Forestali (DAFNE), Università della Tuscia, Via S. Camillo de Lellis snc, 01100, Viterbo, Italy
| | - Renato D'Ovidio
- Dipartimento di Scienze Agrarie e Forestali (DAFNE), Università della Tuscia, Via S. Camillo de Lellis snc, 01100, Viterbo, Italy.
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29
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Kirsch R, Heckel DG, Pauchet Y. How the rice weevil breaks down the pectin network: Enzymatic synergism and sub-functionalization. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY 2016; 71:72-82. [PMID: 26899322 DOI: 10.1016/j.ibmb.2016.02.007] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2016] [Revised: 02/12/2016] [Accepted: 02/14/2016] [Indexed: 05/19/2023]
Abstract
Pectin is the most complex polysaccharide in nature and highly abundant in plant cell walls and middle lamellae, where it functions in plant growth and development. Phytopathogens utilize plant pectin as an energy source through enzyme-mediated degradation. These pectolytic enzymes include polygalacturonases (PGs) of the GH28 family and pectin methylesterases (PMEs) of the CE8 family. Recently, PGs were also identified in herbivorous insects of the distantly related plant bug, stick insect and Phytophaga beetle lineages. Unlike all other insects, weevils possess PMEs in addition to PGs. To investigate pectin digestion in insects and the role of PMEs in weevils, all PME and PG family members of the rice weevil Sitophilus oryzae were heterologously expressed and functionally characterized. Enzymatically active and inactive PG and PME family members were identified. The loss of activity can be explained by a lack of substrate binding correlating with substitutions of functionally important amino acid residues. We found subfunctionalization in both enzyme families, supported by expression pattern and substrate specificities as well as evidence for synergistic pectin breakdown. Our data suggest that the rice weevil might be able to use pectin as an energy source, and illustrates the potential of both PG and PME enzyme families to functionally diversify after horizontal gene transfer.
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Affiliation(s)
- Roy Kirsch
- Department of Entomology, Max Planck Institute for Chemical Ecology, Hans-Knoell-Str. 8, Jena, 07745, Germany.
| | - David G Heckel
- Department of Entomology, Max Planck Institute for Chemical Ecology, Hans-Knoell-Str. 8, Jena, 07745, Germany
| | - Yannick Pauchet
- Department of Entomology, Max Planck Institute for Chemical Ecology, Hans-Knoell-Str. 8, Jena, 07745, Germany.
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30
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Fernandes JC, Goulao LF, Amâncio S. Regulation of cell wall remodeling in grapevine (Vitis vinifera L.) callus under individual mineral stress deficiency. JOURNAL OF PLANT PHYSIOLOGY 2016; 190:95-105. [PMID: 26735749 DOI: 10.1016/j.jplph.2015.10.007] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2015] [Revised: 10/22/2015] [Accepted: 10/22/2015] [Indexed: 06/05/2023]
Abstract
Cell wall (CW) is a dynamic structure that determines the plant form, growth and response to environmental conditions. Vitis vinifera callus grown under nitrogen (-N), phosphorous (-P) and sulfur (-S) deficiency were used as a model system to address the influence of mineral stress in CW remodeling. Callus cells morphology was altered, mostly under -N, resulting in changes in cell length and width compared with the control. CW composition ascertained with specific staining and immuno-detection showed a decrease in cellulose and altered pattern of pectin methylesterification. Under mineral stress genes expression from candidate families disclosed mainly a downregulation of a glycosyl hydrolase family 9C (GH9C), xyloglucan transglycosylase/hydrolases (XTHs) with predicted hydrolytic activity and pectin methylesterases (PMEs). Conversely, upregulation of PMEs inhibitors (PMEIs) was observed. While methylesterification patterns can be associated to PME/PMEI gene expression, the lower cellulose content cannot be attributed to altered cellulose synthase (CesA) gene expression suggesting the involvement of other gene families. Salt extracts from -N and -P callus tissues increased plastic deformation in cucumber hypocotyls while no effect was observed with -S extracts. The lower endo-acting glycosyl hydrolase activity of -N callus extracts pinpoints a more expressive impact of -N on CW-remodeling.
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Affiliation(s)
- João C Fernandes
- DRAT/LEAF, Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, 1349-017 Lisbon, Portugal
| | - Luis F Goulao
- BioTrop, Instituto de Investigação Científica Tropical (IICT, IP), Pólo Mendes Ferrão-Tapada da Ajuda, 1349-017 Lisbon, Portugal
| | - Sara Amâncio
- DRAT/LEAF, Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, 1349-017 Lisbon, Portugal.
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31
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Kent LM, Loo TS, Melton LD, Mercadante D, Williams MAK, Jameson GB. Structure and Properties of a Non-processive, Salt-requiring, and Acidophilic Pectin Methylesterase from Aspergillus niger Provide Insights into the Key Determinants of Processivity Control. J Biol Chem 2015; 291:1289-306. [PMID: 26567911 DOI: 10.1074/jbc.m115.673152] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2015] [Indexed: 12/17/2022] Open
Abstract
Many pectin methylesterases (PMEs) are expressed in plants to modify plant cell-wall pectins for various physiological roles. These pectins are also attacked by PMEs from phytopathogens and phytophagous insects. The de-methylesterification by PMEs of the O6-methyl ester groups of the homogalacturonan component of pectin, exposing galacturonic acids, can occur processively or non-processively, respectively, describing sequential versus single de-methylesterification events occurring before enzyme-substrate dissociation. The high resolution x-ray structures of a PME from Aspergillus niger in deglycosylated and Asn-linked N-acetylglucosamine-stub forms reveal a 10⅔-turn parallel β-helix (similar to but with less extensive loops than bacterial, plant, and insect PMEs). Capillary electrophoresis shows that this PME is non-processive, halophilic, and acidophilic. Molecular dynamics simulations and electrostatic potential calculations reveal very different behavior and properties compared with processive PMEs. Specifically, uncorrelated rotations are observed about the glycosidic bonds of a partially de-methyl-esterified decasaccharide model substrate, in sharp contrast to the correlated rotations of processive PMEs, and the substrate-binding groove is negatively not positively charged.
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Affiliation(s)
- Lisa M Kent
- From Riddet Institute and Institute of Fundamental Sciences, Massey University, Palmerston North 4442, New Zealand
| | - Trevor S Loo
- From Riddet Institute and Institute of Fundamental Sciences, Massey University, Palmerston North 4442, New Zealand
| | - Laurence D Melton
- From Riddet Institute and School of Chemical Sciences, University of Auckland, Auckland 1142, New Zealand
| | - Davide Mercadante
- From Riddet Institute and Molecular Biomechanics Group, Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, 69118 Heidelberg, Germany, and
| | - Martin A K Williams
- From Riddet Institute and Institute of Fundamental Sciences, Massey University, Palmerston North 4442, New Zealand, MacDiarmid Institute for Advanced Materials and Nanotechnology, Palmerston North 4442, New Zealand
| | - Geoffrey B Jameson
- From Riddet Institute and Institute of Fundamental Sciences, Massey University, Palmerston North 4442, New Zealand, MacDiarmid Institute for Advanced Materials and Nanotechnology, Palmerston North 4442, New Zealand
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32
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Dorokhov YL, Shindyapina AV, Sheshukova EV, Komarova TV. Metabolic methanol: molecular pathways and physiological roles. Physiol Rev 2015; 95:603-44. [PMID: 25834233 DOI: 10.1152/physrev.00034.2014] [Citation(s) in RCA: 122] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
Methanol has been historically considered an exogenous product that leads only to pathological changes in the human body when consumed. However, in normal, healthy individuals, methanol and its short-lived oxidized product, formaldehyde, are naturally occurring compounds whose functions and origins have received limited attention. There are several sources of human physiological methanol. Fruits, vegetables, and alcoholic beverages are likely the main sources of exogenous methanol in the healthy human body. Metabolic methanol may occur as a result of fermentation by gut bacteria and metabolic processes involving S-adenosyl methionine. Regardless of its source, low levels of methanol in the body are maintained by physiological and metabolic clearance mechanisms. Although human blood contains small amounts of methanol and formaldehyde, the content of these molecules increases sharply after receiving even methanol-free ethanol, indicating an endogenous source of the metabolic methanol present at low levels in the blood regulated by a cluster of genes. Recent studies of the pathogenesis of neurological disorders indicate metabolic formaldehyde as a putative causative agent. The detection of increased formaldehyde content in the blood of both neurological patients and the elderly indicates the important role of genetic and biochemical mechanisms of maintaining low levels of methanol and formaldehyde.
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Affiliation(s)
- Yuri L Dorokhov
- A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia; and N. I. Vavilov Institute of General Genetics, Russian Academy of Science, Moscow, Russia
| | - Anastasia V Shindyapina
- A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia; and N. I. Vavilov Institute of General Genetics, Russian Academy of Science, Moscow, Russia
| | - Ekaterina V Sheshukova
- A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia; and N. I. Vavilov Institute of General Genetics, Russian Academy of Science, Moscow, Russia
| | - Tatiana V Komarova
- A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia; and N. I. Vavilov Institute of General Genetics, Russian Academy of Science, Moscow, Russia
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33
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Floudas D, Held BW, Riley R, Nagy LG, Koehler G, Ransdell AS, Younus H, Chow J, Chiniquy J, Lipzen A, Tritt A, Sun H, Haridas S, LaButti K, Ohm RA, Kües U, Blanchette RA, Grigoriev IV, Minto RE, Hibbett DS. Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii. Fungal Genet Biol 2015; 76:78-92. [PMID: 25683379 DOI: 10.1016/j.fgb.2015.02.002] [Citation(s) in RCA: 97] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2014] [Revised: 12/26/2014] [Accepted: 02/05/2015] [Indexed: 11/17/2022]
Abstract
Wood decay mechanisms in Agaricomycotina have been traditionally separated in two categories termed white and brown rot. Recently the accuracy of such a dichotomy has been questioned. Here, we present the genome sequences of the white-rot fungus Cylindrobasidium torrendii and the brown-rot fungus Fistulina hepatica both members of Agaricales, combining comparative genomics and wood decay experiments. C. torrendii is closely related to the white-rot root pathogen Armillaria mellea, while F. hepatica is related to Schizophyllum commune, which has been reported to cause white rot. Our results suggest that C. torrendii and S. commune are intermediate between white-rot and brown-rot fungi, but at the same time they show characteristics of decay that resembles soft rot. Both species cause weak wood decay and degrade all wood components but leave the middle lamella intact. Their gene content related to lignin degradation is reduced, similar to brown-rot fungi, but both have maintained a rich array of genes related to carbohydrate degradation, similar to white-rot fungi. These characteristics appear to have evolved from white-rot ancestors with stronger ligninolytic ability. F. hepatica shows characteristics of brown rot both in terms of wood decay genes found in its genome and the decay that it causes. However, genes related to cellulose degradation are still present, which is a plesiomorphic characteristic shared with its white-rot ancestors. Four wood degradation-related genes, homologs of which are frequently lost in brown-rot fungi, show signs of pseudogenization in the genome of F. hepatica. These results suggest that transition toward a brown-rot lifestyle could be an ongoing process in F. hepatica. Our results reinforce the idea that wood decay mechanisms are more diverse than initially thought and that the dichotomous separation of wood decay mechanisms in Agaricomycotina into white rot and brown rot should be revisited.
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Affiliation(s)
- Dimitrios Floudas
- Department of Biology, Clark University, 950 Main St, Worcester 01610, MA, USA; MEMEG, Ecology Building Sölvegatan 37, 223 62, Lund, Sweden.
| | - Benjamin W Held
- Department of Plant Pathology, University of Minnesota, 1991 Upper Buford Circle, St. Paul, MN 55108-6030, USA.
| | - Robert Riley
- US Department of Energy (DOE) Joint Genome Institute, Walnut Creek, California, USA.
| | - Laszlo G Nagy
- Department of Biology, Clark University, 950 Main St, Worcester 01610, MA, USA; Institute of Biochemistry, Biological Research Centre of the Hungarian Academy of Sciences, Temesvári krt. 62, H-6726 Szeged, Hungary.
| | - Gage Koehler
- Department of Chemistry and Chemical Biology, Indiana University-Purdue University Indianapolis, LD326, 402 N Blackford St, Indianapolis, IN 46202, USA.
| | - Anthony S Ransdell
- Department of Chemistry and Chemical Biology, Indiana University-Purdue University Indianapolis, LD326, 402 N Blackford St, Indianapolis, IN 46202, USA.
| | - Hina Younus
- Department of Chemistry and Chemical Biology, Indiana University-Purdue University Indianapolis, LD326, 402 N Blackford St, Indianapolis, IN 46202, USA.
| | - Julianna Chow
- US Department of Energy (DOE) Joint Genome Institute, Walnut Creek, California, USA.
| | - Jennifer Chiniquy
- US Department of Energy (DOE) Joint Genome Institute, Walnut Creek, California, USA.
| | - Anna Lipzen
- US Department of Energy (DOE) Joint Genome Institute, Walnut Creek, California, USA.
| | - Andrew Tritt
- US Department of Energy (DOE) Joint Genome Institute, Walnut Creek, California, USA.
| | - Hui Sun
- US Department of Energy (DOE) Joint Genome Institute, Walnut Creek, California, USA.
| | - Sajeet Haridas
- US Department of Energy (DOE) Joint Genome Institute, Walnut Creek, California, USA.
| | - Kurt LaButti
- US Department of Energy (DOE) Joint Genome Institute, Walnut Creek, California, USA.
| | - Robin A Ohm
- US Department of Energy (DOE) Joint Genome Institute, Walnut Creek, California, USA; Microbiology, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands.
| | - Ursula Kües
- Institute for Forest Botany, University of Göttingen, Büsgenweg 2, 37077 Göttingen, Germany.
| | - Robert A Blanchette
- Department of Plant Pathology, University of Minnesota, 1991 Upper Buford Circle, St. Paul, MN 55108-6030, USA.
| | - Igor V Grigoriev
- US Department of Energy (DOE) Joint Genome Institute, Walnut Creek, California, USA.
| | - Robert E Minto
- Department of Chemistry and Chemical Biology, Indiana University-Purdue University Indianapolis, LD326, 402 N Blackford St, Indianapolis, IN 46202, USA.
| | - David S Hibbett
- Department of Biology, Clark University, 950 Main St, Worcester 01610, MA, USA.
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Scheler C, Weitbrecht K, Pearce SP, Hampstead A, Büttner-Mainik A, Lee KJD, Voegele A, Oracz K, Dekkers BJW, Wang X, Wood ATA, Bentsink L, King JR, Knox JP, Holdsworth MJ, Müller K, Leubner-Metzger G. Promotion of testa rupture during garden cress germination involves seed compartment-specific expression and activity of pectin methylesterases. PLANT PHYSIOLOGY 2015; 167:200-15. [PMID: 25429110 PMCID: PMC4280999 DOI: 10.1104/pp.114.247429] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Pectin methylesterase (PME) controls the methylesterification status of pectins and thereby determines the biophysical properties of plant cell walls, which are important for tissue growth and weakening processes. We demonstrate here that tissue-specific and spatiotemporal alterations in cell wall pectin methylesterification occur during the germination of garden cress (Lepidium sativum). These cell wall changes are associated with characteristic expression patterns of PME genes and resultant enzyme activities in the key seed compartments CAP (micropylar endosperm) and RAD (radicle plus lower hypocotyl). Transcriptome and quantitative real-time reverse transcription-polymerase chain reaction analysis as well as PME enzyme activity measurements of separated seed compartments, including CAP and RAD, revealed distinct phases during germination. These were associated with hormonal and compartment-specific regulation of PME group 1, PME group 2, and PME inhibitor transcript expression and total PME activity. The regulatory patterns indicated a role for PME activity in testa rupture (TR). Consistent with a role for cell wall pectin methylesterification in TR, treatment of seeds with PME resulted in enhanced testa permeability and promoted TR. Mathematical modeling of transcript expression changes in germinating garden cress and Arabidopsis (Arabidopsis thaliana) seeds suggested that group 2 PMEs make a major contribution to the overall PME activity rather than acting as PME inhibitors. It is concluded that regulated changes in the degree of pectin methylesterification through CAP- and RAD-specific PME and PME inhibitor expression play a crucial role during Brassicaceae seed germination.
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Affiliation(s)
- Claudia Scheler
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Karin Weitbrecht
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Simon P Pearce
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Anthony Hampstead
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Annette Büttner-Mainik
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Kieran J D Lee
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Antje Voegele
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Krystyna Oracz
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Bas J W Dekkers
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Xiaofeng Wang
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Andrew T A Wood
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Leónie Bentsink
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - John R King
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - J Paul Knox
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Michael J Holdsworth
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Kerstin Müller
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Gerhard Leubner-Metzger
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
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Remoroza C, Wagenknecht M, Buchholt HC, Moerschbacher BM, Gruppen H, Schols HA. Mode of action of Bacillus licheniformis pectin methylesterase on highly methylesterified and acetylated pectins. Carbohydr Polym 2015; 115:540-50. [DOI: 10.1016/j.carbpol.2014.09.016] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2014] [Revised: 06/25/2014] [Accepted: 09/01/2014] [Indexed: 11/29/2022]
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Kim WC, Kim JY, Ko JH, Kang H, Kim J, Han KH. AtC3H14, a plant-specific tandem CCCH zinc-finger protein, binds to its target mRNAs in a sequence-specific manner and affects cell elongation in Arabidopsis thaliana. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2014; 80:772-84. [PMID: 25228083 DOI: 10.1111/tpj.12667] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2014] [Revised: 08/27/2014] [Accepted: 08/29/2014] [Indexed: 05/19/2023]
Abstract
AtC3H14 (At1 g66810) is a plant-specific tandem CCCH zinc-finger (TZF) protein that belongs to the 68-member CCCH family in Arabidopsis thaliana. In animals, TZFs have been shown to bind and recruit target mRNAs to the cytoplasmic foci where mRNA decay enzymes are active. However, it is not known whether plant TZF proteins such as AtC3H14 function. So far, no mRNA targets of plant TZFs have been identified. We have obtained several lines of experimental evidence in support of our hypothesis that AtC3H14 is involved in post-transcriptional regulation of its target genes. Nucleic acid binding assays using [(35) S]-labeled AtC3H14 protein showed that AtC3H14 could bind to ssDNA, dsDNA, and ribohomopolymers, suggesting its RNA-binding activity. RNA immunoprecipitation (RIP) assay identified several putative target RNAs of AtC3H14, including a polygalacturonase, a well-known cell wall modifying gene. RNA electrophoretic mobility shift assays (RNA-EMSA) were used to confirm the RIP results and demonstrate that the TZF domain of AtC3H14 is required for the target RNA binding. Microarray analysis of 35S::AtC3H14 plants revealed that many of the cell wall elongation and/or modification-associated genes were differentially expressed, which is consistent with the cell elongation defect phenotype and the changes in the cell wall monosaccharide composition. In addition, yeast activation assay showed that AtC3H14 also function as a transcriptional activator, which is consistent with the previous finding that AtC3H14 activate the secondary wall biosynthesis genes. Taken together, we conclude that AtC3H14 may play a key role in both transcriptional and post-transcriptional regulation.
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Affiliation(s)
- Won-Chan Kim
- Department of Horticulture and Department of Forestry, Michigan State University, East Lansing, MI, 48824-1222, USA; DOE-Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824-1222, USA
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37
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Nistor OV, Stănciuc N, Aprodu I, Botez E. New insights into heat induced structural changes of pectin methylesterase on fluorescence spectroscopy and molecular modeling basis. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 128:15-21. [PMID: 24657465 DOI: 10.1016/j.saa.2014.02.146] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2013] [Revised: 02/18/2014] [Accepted: 02/21/2014] [Indexed: 06/03/2023]
Abstract
Heat-induced structural changes of Aspergillus oryzae pectin methylesterase (PME) were studied by means of fluorescence spectroscopy and molecular modeling, whereas the functional enzyme stability was monitored by inactivation studies. The fluorescence spectroscopy experiments were performed at two pH value (4.5 and 7.0). At both pH values, the phase diagrams were linear, indicating the presence of two molecular species induced by thermal treatment. A red shift of 7 nm was observed at neutral pH by increasing temperature up to 60°C, followed by a blue shift of 4 nm at 70°C, suggesting significant conformational rearrangements. The quenching experiments using acrylamide and iodide demonstrate a more flexible conformation of enzyme with increasing temperature, especially at neutral pH. The experimental results were complemented with atomic level observations on PME model behavior after performing molecular dynamics simulations at different temperatures. The inactivation kinetics of PME in buffer solutions was fitted using a first-order kinetics model, resulting in activation energy of 241.4±7.51 kJ mol(-1).
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Affiliation(s)
- Oana Viorela Nistor
- "Dunărea de Jos" University of Galati, Faculty of Food Science and Engineering, Domnească Street 111, 800201 Galati, Romania
| | - Nicoleta Stănciuc
- "Dunărea de Jos" University of Galati, Faculty of Food Science and Engineering, Domnească Street 111, 800201 Galati, Romania
| | - Iuliana Aprodu
- "Dunărea de Jos" University of Galati, Faculty of Food Science and Engineering, Domnească Street 111, 800201 Galati, Romania
| | - Elisabeta Botez
- "Dunărea de Jos" University of Galati, Faculty of Food Science and Engineering, Domnească Street 111, 800201 Galati, Romania.
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38
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Komarova TV, Pozdyshev DV, Petrunia IV, Sheshukova EV, Dorokhov YL. Pectin methylesterase-generated methanol may be involved in tobacco leaf growth. BIOCHEMISTRY. BIOKHIMIIA 2014; 79:102-10. [PMID: 24794725 DOI: 10.1134/s0006297914020035] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Plant leaves undergo a sink-source modification of intercellular macromolecular transport during the transition from carbon import to carbon export. After assessing the role of metabolite signaling in gene regulation in Nicotiana tabacum sink and source leaves, we observed increased pectin methylesterase (PME)-mediated methanol generation in immature leaves. Using suppression subtractive hybridization (SSH), we identified a number of genes whose activity changes from sink to source leaves. The most abundant SSH-identified genes appeared to be sensitive to methanol. We hypothesize that tobacco leaf maturation and the sink-source transition are accompanied by a change in mRNA levels of genes that function in methanol-dependent cell signaling.
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Affiliation(s)
- T V Komarova
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, 119991, Russia.
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Savary BJ, Vasu P, Cameron RG, McCollum TG, Nuñez A. Structural characterization of the thermally tolerant pectin methylesterase purified from citrus sinensis fruit and its gene sequence. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2013; 61:12711-12719. [PMID: 24328246 DOI: 10.1021/jf403914u] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Despite the longstanding importance of the thermally tolerant pectin methylesterase (TT-PME) activity in citrus juice processing and product quality, the unequivocal identification of the protein and its corresponding gene has remained elusive. TT-PME was purified from sweet orange [ Citrus sinensis (L.) Osbeck] finisher pulp (8.0 mg/1.3 kg tissue) with an improved purification scheme that provided 20-fold increased enzyme yield over previous results. Structural characterization of electrophoretically pure TT-PME by MALDI-TOF MS determined molecular masses of approximately 47900 and 53000 Da for two principal glycoisoforms. De novo sequences generated from tryptic peptides by MALDI-TOF/TOF MS matched multiple anonymous Citrus EST cDNA accessions. The complete tt-pme cDNA (1710 base pair) was cloned from a fruit mRNA library using RT- and RLM-RACE PCR. Citrus TT-PME is a novel isoform that showed higher sequence identity with the multiply glycosylated kiwifruit PME than to previously described Citrus thermally labile PME isoforms.
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Affiliation(s)
- Brett J Savary
- Eastern Regional Research Center, Agricultural Research Service , U.S. Department of Agriculture, Wyndmoor, Pennsylvania 19038, United States
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40
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Weber M, Deinlein U, Fischer S, Rogowski M, Geimer S, Tenhaken R, Clemens S. A mutation in the Arabidopsis thaliana cell wall biosynthesis gene pectin methylesterase 3 as well as its aberrant expression cause hypersensitivity specifically to Zn. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2013; 76:151-64. [PMID: 23826687 DOI: 10.1111/tpj.12279] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2013] [Revised: 06/21/2013] [Accepted: 07/02/2013] [Indexed: 05/24/2023]
Abstract
Defects in metal homeostasis factors are often accompanied by the loss of metal tolerance. Therefore, we screened for mutants with compromised growth in the presence of excess Zn(2+) in order to identify factors involved in Zn biology in plants. Here we report the isolation of six ozs (overly Zn sensitive) ethyl methanesulfonate Arabidopsis thaliana mutants with contrasting patterns of metal sensitivity, and the molecular characterization of two mutants hypersensitive specifically to Zn(2+) . Mutant ozs1 represents a non-functional allele of the vacuolar Zn transporter AtMTP1, providing additional genetic evidence for its major role in Zn(2+) tolerance in seedlings. Mutant ozs2 carries a semi-dominant mutation in the gene encoding pectin methylesterase 3 (AtPME3), an enzyme catalyzing demethylesterification of pectin. The mutation results in impaired proteolytic processing of AtPME3. Ectopic expression of AtPME3 causes strong Zn(2+) hypersensitivity that is tightly correlated with transcript abundance. Together these observations suggest detrimental effects on Golgi-localized processes. The ozs2 but not the ozs1 phenotype can be suppressed by extra Ca(2+) , indicating changes in apoplastic cation-binding capacity. However, we did not detect any changes in bulk metal-binding capacity, overall pectin methylesterification status or cell wall ultrastructure in ozs2, leading us to hypothesize that the ozs2 mutation causes hypersensitivity towards the specific interference of Zn ions with cell wall-controlled growth processes.
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Affiliation(s)
- Michael Weber
- Department of Plant Physiology, University of Bayreuth, Universitätsstrasse 30, 95440, Bayreuth, Germany
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Franková L, Fry SC. Biochemistry and physiological roles of enzymes that 'cut and paste' plant cell-wall polysaccharides. JOURNAL OF EXPERIMENTAL BOTANY 2013; 64:3519-50. [PMID: 23956409 DOI: 10.1093/jxb/ert201] [Citation(s) in RCA: 137] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
The plant cell-wall matrix is equipped with more than 20 glycosylhydrolase activities, including both glycosidases and glycanases (exo- and endo-hydrolases, respectively), which between them are in principle capable of hydrolysing most of the major glycosidic bonds in wall polysaccharides. Some of these enzymes also participate in the 'cutting and pasting' (transglycosylation) of sugar residues-enzyme activities known as transglycosidases and transglycanases. Their action and biological functions differ from those of the UDP-dependent glycosyltransferases (polysaccharide synthases) that catalyse irreversible glycosyl transfer. Based on the nature of the substrates, two types of reaction can be distinguished: homo-transglycosylation (occurring between chemically similar polymers) and hetero-transglycosylation (between chemically different polymers). This review focuses on plant cell-wall-localized glycosylhydrolases and the transglycosylase activities exhibited by some of these enzymes and considers the physiological need for wall polysaccharide modification in vivo. It describes the mechanism of transglycosylase action and the classification and phylogenetic variation of the enzymes. It discusses the modulation of their expression in plants at the transcriptional and translational levels, and methods for their detection. It also critically evaluates the evidence that the enzyme proteins under consideration exhibit their predicted activity in vitro and their predicted action in vivo. Finally, this review suggests that wall-localized glycosylhydrolases with transglycosidase and transglycanase abilities are widespread in plants and play important roles in the mechanism and control of plant cell expansion, differentiation, maturation, and wall repair.
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Affiliation(s)
- Lenka Franková
- Edinburgh Cell Wall Group, Institute of Molecular Plant Sciences, School of Biological Sciences, The University of Edinburgh, The King's Buildings, Mayfield Road, Edinburgh EH9 3JH, UK
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Gómez MD, Renau-Morata B, Roque E, Polaina J, Beltrán JP, Cañas LA. PsPMEP, a pollen-specific pectin methylesterase of pea (Pisum sativum L.). PLANT REPRODUCTION 2013; 26:245-54. [PMID: 23839307 DOI: 10.1007/s00497-013-0220-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2013] [Accepted: 06/23/2013] [Indexed: 05/23/2023]
Abstract
Pectin methylesterases (PMEs) are a family of enzymes involved in plant reproductive processes such as pollen development and pollen tube growth. We have isolated and characterized PsPMEP, a pea (Pisum sativum L.) pollen-specific gene that encodes a protein with homology to PMEs. Sequence analysis showed that PsPMEP belongs to group 2 PMEs, which are characterized by the presence of a processable amino-terminal PME inhibitor domain followed by the catalytic PME domain. Moreover, PsPMEP contains several motifs highly conserved among PMEs with the essential amino acid residues involved in enzyme substrate binding and catalysis. Northern blot and in situ hybridization analyses showed that PsPMEP is expressed in pollen grains from 4 days before anthesis till anther dehiscence and in pollinated carpels. In the PsPMEP promoter region, we have identified several conserved cis-regulatory elements that have been associated with gene pollen-specific expression. Expression analysis of PsPMEP promoter fused to the uidA reporter gene in Arabidopsis thaliana plants showed a similar expression pattern when compared with pea, indicating that this promoter is also functional in a non-leguminous plant. GUS expression was detected in mature pollen grains, during pollen germination, during pollen tube elongation along the transmitting tract, and when the pollen tube reaches the embryo sac in the ovule.
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Affiliation(s)
- María Dolores Gómez
- Instituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Ciudad Politécnica de la Innovación, Edf. 8E. C/, Ingeniero Fausto Elio s/n, 46011, Valencia, Spain
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Wang M, Yuan D, Gao W, Li Y, Tan J, Zhang X. A comparative genome analysis of PME and PMEI families reveals the evolution of pectin metabolism in plant cell walls. PLoS One 2013; 8:e72082. [PMID: 23951288 PMCID: PMC3741192 DOI: 10.1371/journal.pone.0072082] [Citation(s) in RCA: 75] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2013] [Accepted: 07/04/2013] [Indexed: 12/13/2022] Open
Abstract
Pectins are fundamental polysaccharides in the plant primary cell wall. Pectins are synthesized and secreted to cell walls as highly methyl-esterified polymers and then demethyl-esterified by pectin methylesterases (PMEs), which are spatially regulated by pectin methylesterase inhibitors (PMEIs). Although PME and PMEI genes are pivotal in plant cell wall formation, few studies have focused on the evolutionary patterns of the PME and PMEI gene families. In this study, the gene origin, evolution, and expression diversity of these two families were systematically analyzed using 11 representative species, including algae, bryophytes, lycophytes and flowering land plants. The results show that 1) for the two subfamilies (PME and proPME) of PME, the origin of the PME subfamily is consistent with the appearance of pectins in early charophyte cell walls, 2) Whole genome duplication (WGD) and tandem duplication contribute to the expansion of proPME and PMEI families in land plants, 3) Evidence of selection pressure shows that the proPME and PMEI families have rapidly evolved, particularly the PMEI family in vascular plants, and 4) Comparative expression profile analysis of the two families indicates that the eudicot Arabidopsis and monocot rice have different expression patterns. In addition, the gene structure and sequence analyses show that the origin of the PMEI domain may be derived from the neofunctionalization of the pro domain after WGD. This study will advance the evolutionary understanding of the PME and PMEI families and plant cell wall development.
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Affiliation(s)
- Maojun Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Daojun Yuan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Wenhui Gao
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Yang Li
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Jiafu Tan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Xianlong Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, China
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Liu Q, Talbot M, Llewellyn DJ. Pectin methylesterase and pectin remodelling differ in the fibre walls of two gossypium species with very different fibre properties. PLoS One 2013; 8:e65131. [PMID: 23755181 PMCID: PMC3673955 DOI: 10.1371/journal.pone.0065131] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2013] [Accepted: 04/22/2013] [Indexed: 01/30/2023] Open
Abstract
Pectin, a major component of the primary cell walls of dicot plants, is synthesized in Golgi, secreted into the wall as methylesters and subsequently de-esterified by pectin methylesterase (PME). Pectin remodelling by PMEs is known to be important in regulating cell expansion in plants, but has been poorly studied in cotton. In this study, genome-wide analysis showed that PMEs are a large multi-gene family (81 genes) in diploid cotton (Gossypium raimondii), an expansion over the 66 in Arabidopsis and suggests the evolution of new functions in cotton. Relatively few PME genes are expressed highly in fibres based on EST abundance and the five most abundant in fibres were cloned and sequenced from two cotton species. Their significant sequence differences and their stage-specific expression in fibres within a species suggest sub-specialisation during fibre development. We determined the transcript abundance of the five fibre PMEs, total PME enzyme activity, pectin content and extent of de-methylesterification of the pectin in fibre walls of the two cotton species over the first 25-30 days of fibre growth. There was a higher transcript abundance of fibre-PMEs and a higher total PME enzyme activity in G. barbadense (Gb) than in G. hirsutum (Gh) fibres, particularly during late fibre elongation. Total pectin was high, but de-esterified pectin was low during fibre elongation (5-12 dpa) in both Gh and Gb. De-esterified pectin levels rose thereafter when total PME activity increased and this occurred earlier in Gb fibres resulting in a lower degree of esterification in Gb fibres between 17 and 22 dpa. Gb fibres are finer and longer than those of Gh, so differences in pectin remodelling during the transition to wall thickening may be an important factor in influencing final fibre diameter and length, two key quality attributes of cotton fibres.
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Affiliation(s)
- Qinxiang Liu
- Plant Industry, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, Australian Capital Territory, Australia
| | - Mark Talbot
- Plant Industry, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, Australian Capital Territory, Australia
| | - Danny J. Llewellyn
- Plant Industry, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, Australian Capital Territory, Australia
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Lionetti V, Cervone F, Bellincampi D. Methyl esterification of pectin plays a role during plant-pathogen interactions and affects plant resistance to diseases. JOURNAL OF PLANT PHYSIOLOGY 2012; 169:1623-30. [PMID: 22717136 DOI: 10.1016/j.jplph.2012.05.006] [Citation(s) in RCA: 156] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2012] [Revised: 05/07/2012] [Accepted: 05/09/2012] [Indexed: 05/18/2023]
Abstract
The cell wall is a complex structure mainly composed by a cellulose-hemicellulose network embedded in a cohesive pectin matrix. Pectin is synthesized in a highly methyl esterified form and is de-esterified in muro by pectin methyl esterases (PMEs). The degree and pattern of methyl esterification affect the cell wall structure and properties with consequences on both the physiological processes of the plants and their resistance to pathogens. PME activity displays a crucial role in the outcome of the plant-pathogen interactions by making pectin more susceptible to the action of the enzymes produced by the pathogens. This review focuses on the impact of pectin methyl esterification in plant-pathogen interactions and on the dynamic role of its alteration during pathogenesis.
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Affiliation(s)
- Vincenzo Lionetti
- Dipartimento di Biologia e Biotecnologie Charles Darwin, Sapienza Università di Roma, Piazzale Aldo Moro 5, 00185 Rome, Italy
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46
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Cação SMB, Leite TF, Budzinski IGF, dos Santos TB, Scholz MBS, Carpentieri-Pipolo V, Domingues DS, Vieira LGE, Pereira LFP. Gene expression and enzymatic activity of pectin methylesterase during fruit development and ripening in Coffea arabica L. GENETICS AND MOLECULAR RESEARCH 2012; 11:3186-97. [PMID: 23007997 DOI: 10.4238/2012.september.3.7] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Coffee quality is directly related to the harvest and post harvest conditions. Non-uniform maturation of coffee fruits, combined with inadequate harvest, negatively affects the final quality of the product. Pectin methylesterase (PME) plays an important role in fruit softening due to the hydrolysis of methylester groups in cell wall pectins. In order to characterize the changes occurring during coffee fruit maturation, the enzymatic activity of PME was measured during different stages of fruit ripening. PME activity progressively increased from the beginning of the ripening process to the cherry fruit stage. In silico analysis of expressed sequence tags of the Brazilian Coffee Genome Project database identified 5 isoforms of PME. We isolated and cloned a cDNA homolog of PME for further characterization. CaPME4 transcription was analyzed in pericarp, perisperm, and endosperm tissues during fruit development and ripening as well as in other plant tissues. Northern blot analysis revealed increased transcription of CaPME4 in the pericarp 300 days after flowering. Low levels of CaPME4 mRNAs were observed in the endosperm 270 days after flowering. Expression of CaPME4 transcripts was strong in the branches and lower in root and flower tissues. We showed that CaPME4 acts specifically during the later stages of fruit ripening and possibly contributes to the softening of coffee fruit, thus playing a significant role in pectin degradation in the fruit pericarp.
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Affiliation(s)
- S M B Cação
- Laboratório de Biotecnologia Vegetal, Instituto Agronômico do Paraná, Londrina, PR, Brasil
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Reca IB, Lionetti V, Camardella L, D'Avino R, Giardina T, Cervone F, Bellincampi D. A functional pectin methylesterase inhibitor protein (SolyPMEI) is expressed during tomato fruit ripening and interacts with PME-1. PLANT MOLECULAR BIOLOGY 2012; 79:429-42. [PMID: 22610346 DOI: 10.1007/s11103-012-9921-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2011] [Accepted: 05/03/2012] [Indexed: 05/18/2023]
Abstract
A pectin methylesterase inhibitor (SolyPMEI) from tomato has been identified and characterised by a functional genomics approach. SolyPMEI is a cell wall protein sharing high similarity with Actinidia deliciosa PMEI (AdPMEI), the best characterised inhibitor from kiwi. It typically affects the activity of plant pectin methylesterases (PMEs) and is inactive against a microbial PME. SolyPMEI transcripts were mainly expressed in flower, pollen and ripe fruit where the protein accumulated at breaker and turning stages of ripening. The expression of SolyPMEI correlated during ripening with that of PME-1, the major fruit specific PME isoform. The interaction of SolyPMEI with PME-1 was demonstrated in ripe fruit by gel filtration and by immunoaffinity chromatography. The analysis of the zonal distribution of PME activity and the co-localization of SolyPMEI with high esterified pectins suggest that SolyPMEI regulates the spatial patterning of distribution of esterified pectins in fruit.
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Affiliation(s)
- Ida Barbara Reca
- Dipartimento di Biologia e Biotecnologie "Charles Darwin", "Sapienza" Università di Roma, Piazzale Aldo Moro 5, 00185, Rome, Italy
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48
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Jimenez-Lopez JC, Kotchoni SO, Rodríguez-García MI, Alché JD. Structure and functional features of olive pollen pectin methylesterase using homology modeling and molecular docking methods. J Mol Model 2012; 18:4965-84. [DOI: 10.1007/s00894-012-1492-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2012] [Accepted: 06/04/2012] [Indexed: 01/08/2023]
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Abstract
Recently, we demonstrated that leaf wounding results in the synthesis of pectin methylesterase (PME), which causes the plant to release methanol into the air. Methanol emitted by a wounded plant increases the accumulation of methanol-inducible gene mRNA and enhances antibacterial resistance as well as cell-to-cell communication, which facilitates virus spreading in neighboring plants. We concluded that methanol is a signaling molecule involved in within-plant and plant-to-plant communication. Methanol is considered to be a poison in humans because of the alcohol dehydrogenase (ADH)-mediated conversion of methanol into toxic formaldehyde. However, recent data showed that methanol is a natural compound in normal, healthy humans. These data call into question whether human methanol is a metabolic waste product or whether methanol has specific function in humans. Here, to reveal human methanol-responsive genes (MRGs), we used suppression subtractive hybridization cDNA libraries of HeLa cells lacking ADH and exposed to methanol. This design allowed us to exclude genes involved in formaldehyde and formic acid detoxification from our analysis. We identified MRGs and revealed a correlation between increases in methanol content in the plasma and changes in human leukocyte MRG mRNA levels after fresh salad consumption by volunteers. Subsequently, we showed that the methanol generated by the pectin/PME complex in the gastrointestinal tract of mice induces the up- and downregulation of brain MRG mRNA. We used an adapted Y-maze to measure the locomotor behavior of the mice while breathing wounded plant vapors in two-choice assays. We showed that mice prefer the odor of methanol to other plant volatiles and that methanol changed MRG mRNA accumulation in the mouse brain. We hypothesize that the methanol emitted by wounded plants may have a role in plant-animal signaling. The known positive effect of plant food intake on human health suggests a role for physiological methanol in human gene regulation.
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50
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Dorokhov YL, Komarova TV, Petrunia IV, Frolova OY, Pozdyshev DV, Gleba YY. Airborne signals from a wounded leaf facilitate viral spreading and induce antibacterial resistance in neighboring plants. PLoS Pathog 2012; 8:e1002640. [PMID: 22496658 PMCID: PMC3320592 DOI: 10.1371/journal.ppat.1002640] [Citation(s) in RCA: 69] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2011] [Accepted: 02/26/2012] [Indexed: 01/19/2023] Open
Abstract
Many plants release airborne volatile compounds in response to wounding due to pathogenic assault. These compounds serve as plant defenses and are involved in plant signaling. Here, we study the effects of pectin methylesterase (PME)-generated methanol release from wounded plants ("emitters") on the defensive reactions of neighboring "receiver" plants. Plant leaf wounding resulted in the synthesis of PME and a spike in methanol released into the air. Gaseous methanol or vapors from wounded PME-transgenic plants induced resistance to the bacterial pathogen Ralstonia solanacearum in the leaves of non-wounded neighboring "receiver" plants. In experiments with different volatile organic compounds, gaseous methanol was the only airborne factor that could induce antibacterial resistance in neighboring plants. In an effort to understand the mechanisms by which methanol stimulates the antibacterial resistance of "receiver" plants, we constructed forward and reverse suppression subtractive hybridization cDNA libraries from Nicotiana benthamiana plants exposed to methanol. We identified multiple methanol-inducible genes (MIGs), most of which are involved in defense or cell-to-cell trafficking. We then isolated the most affected genes for further analysis: β-1,3-glucanase (BG), a previously unidentified gene (MIG-21), and non-cell-autonomous pathway protein (NCAPP). Experiments with Tobacco mosaic virus (TMV) and a vector encoding two tandem copies of green fluorescent protein as a tracer of cell-to-cell movement showed the increased gating capacity of plasmodesmata in the presence of BG, MIG-21, and NCAPP. The increased gating capacity is accompanied by enhanced TMV reproduction in the "receivers". Overall, our data indicate that methanol emitted by a wounded plant acts as a signal that enhances antibacterial resistance and facilitates viral spread in neighboring plants.
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Affiliation(s)
- Yuri L Dorokhov
- A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia.
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