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Bakiu R, Pacchini S, Piva E, Schumann S, Tolomeo AM, Ferro D, Irato P, Santovito G. Metallothionein Expression as a Physiological Response against Metal Toxicity in the Striped Rockcod Trematomus hansoni. Int J Mol Sci 2022; 23:12799. [PMID: 36361591 PMCID: PMC9657541 DOI: 10.3390/ijms232112799] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2022] [Revised: 10/21/2022] [Accepted: 10/21/2022] [Indexed: 09/08/2023] Open
Abstract
Metal bioaccumulation and metallothionein (MT) expression were investigated in the gills and liver of the red-blooded Antarctic teleost Trematomus hansoni to evaluate the possibility for this species to face, with adequate physiological responses, an increase of copper and cadmium concentrations in its tissues. Specimens of this Antarctic fish were collected from Terra Nova Bay (Ross Sea) and used for a metal exposure experiment in controlled laboratory conditions. The two treatments led to a significant accumulation of both metals and increased gene transcription only for the MT-1. The biosynthesis of MTs was verified especially in specimens exposed to Cd, but most of these proteins were soon oxidized, probably because they were involved in cell protection against oxidative stress risk by scavenging reactive oxygen species. The obtained data highlighted the phenotypic plasticity of T. hansoni, a species that evolved in an environment characterized by naturally high concentrations of Cu and Cd, and maybe the possibility for the Antarctic fish to face the challenges of a world that is becoming more toxic every day.
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Affiliation(s)
- Rigers Bakiu
- Department of Aquaculture and Fisheries, Agricultural University of Tirana, 1000 Tirana, Albania
| | - Sara Pacchini
- Department of Biology, University of Padua, Via U. Bassi 58/B, 35131 Padua, Italy
| | - Elisabetta Piva
- Department of Biology, University of Padua, Via U. Bassi 58/B, 35131 Padua, Italy
| | - Sophia Schumann
- Department of Biology, University of Padua, Via U. Bassi 58/B, 35131 Padua, Italy
| | - Anna Maria Tolomeo
- Department of Cardiac, Thoracic and Vascular Science and Public Health, University of Padua, 35128 Padua, Italy
| | - Diana Ferro
- Department of Pediatrics, University of Missouri-Kansas City, Kansas City, MO 64108, USA
| | - Paola Irato
- Department of Biology, University of Padua, Via U. Bassi 58/B, 35131 Padua, Italy
| | - Gianfranco Santovito
- Department of Biology, University of Padua, Via U. Bassi 58/B, 35131 Padua, Italy
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2
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Copper Bioremediation Ability of Ciliate Paramecium multimicronucleatum Isolated from Industrial Wastewater. WATER 2022. [DOI: 10.3390/w14091419] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
The growing problems of environmental damage have been caused by the continuous outrush of heavy metals from industrial wastewater. To resolve this issue, bioremediation is playing a safe and eco-friendly role in the removal of these heavy metals from environmental wastewater bodies. It has provoked demand with regard to understanding the mechanisms of bioaccumulation and detoxification developed by the organisms living in the heavy metal-exposed industrial wastewater. The present investigation focuses on Paramecium multimicronucleatum, a ciliated protozoan isolated from industrial wastewater, with the objective of assessing its capabilities as an environmental bioremediator. Purified cell culture was maintained in bold basal salt medium and optimum growth conditions were determined. A maximum growth rate of 6.0–9.0 × 103 cells/mL at 25–30 °C and pH 7.0 was observed, and therefore revealed to be the optimal growth conditions for this species. It can tolerate 40–50 µg/mL of copper ion stress with little effect on growth rate as compared to control. It is able to uptake more than 80% of copper ions from the medium in 96 h. A significant twofold rise in glutathione content and non-protein thiols was recorded as an indication of a defensive mechanism in place to fight against the oxidative stress caused by the copper treatment. A notable increase of 50–70 µg/mL in total protein content of stressed cells in comparison to non-stressed was also observed as potential induction of some particular proteins for the purpose of resistance against copper stress.
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Drago L, Ferro D, Bakiu R, Ballarin L, Santovito G. Typical 2-Cys Peroxiredoxins as a Defense Mechanism against Metal-Induced Oxidative Stress in the Solitary Ascidian Ciona robusta. Antioxidants (Basel) 2021; 11:93. [PMID: 35052596 PMCID: PMC8772837 DOI: 10.3390/antiox11010093] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 12/28/2021] [Accepted: 12/28/2021] [Indexed: 01/02/2023] Open
Abstract
Typical 2-Cys peroxiredoxins (2-Cys Prdxs) are proteins with antioxidant properties belonging to the thioredoxin peroxidase family. With their peroxidase activity, they contribute to the homeostatic control of reactive oxygen species (ROS) and, therefore, participate in various physiological functions, such as cell proliferation, differentiation, and apoptosis. Although Prdxs have been shown to be potential biomarkers for monitoring aquatic environments, minimal scientific attention has been devoted to describing their molecular architecture and function in marine invertebrates. Our study aims to clarify the protective role against stress induced by exposure to metals (Cu, Zn, and Cd) of three Prdxs (Prdx2, Prdx3, and Prdx4) in the solitary ascidian Ciona robusta, an invertebrate chordate. Here, we report a detailed pre- and post-translational regulation of the three Prdx isoforms. Data on intestinal mRNA expression, provided by qRT-PCR analyses, show a generalized increase for Prdx2, -3, and -4, which is correlated to metal accumulation. Furthermore, the increase in tissue enzyme activity observed after Zn exposure is slower than that observed with Cu and Cd. The obtained results increase our knowledge of the evolution of anti-stress proteins in invertebrates and emphasize the importance of the synthesis of Prdxs as an efficient way to face adverse environmental conditions.
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Affiliation(s)
- Laura Drago
- Department of Biology, University of Padova, 35131 Padova, Italy;
| | - Diana Ferro
- Children’s Mercy Research Institute, Hospital and Clinics, Kansas City, MO 64108, USA;
- Department of Pediatrics, University of Missouri-Kansas City, Kansas City, MO 64108, USA
| | - Rigers Bakiu
- Department of Aquaculture and Fisheries, Agricultural University of Tirana, 1000 Tiranë, Albania;
| | - Loriano Ballarin
- Department of Biology, University of Padova, 35131 Padova, Italy;
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Laura D, Anna P, Nicola F, Loriano B, Rigers B, Gianfranco S. Stress granules in Ciona robusta: First evidences of TIA-1-related nucleolysin and tristetraprolin gene expression under metal exposure. Comp Biochem Physiol C Toxicol Pharmacol 2021; 243:108977. [PMID: 33465518 DOI: 10.1016/j.cbpc.2021.108977] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Revised: 01/04/2021] [Accepted: 01/09/2021] [Indexed: 12/17/2022]
Abstract
Stress granules are non-membranous cytoplasmic foci, composed of non-translating messenger ribonucleoproteins, translational initiation factors and other additional proteins. They represent a primary mechanism to rapidly modulate gene expression when cells are subjected to adverse environmental conditions. Very few works have been devoted to study the presence of the molecular components of stress granules in invertebrates. In this work, we characterized the transcript sequences for two important protein components of stress granules, TIA-1-related nucleolysin (TIAR) and tristetraprolin (TTP), in the solitary ascidian Ciona robusta, an invertebrate chordate, and carried out the first studies on their gene expression under stress conditions induced by metals (Cu, Zn and Cd). Data on mRNA expression levels, provided by qRT-PCR analyses, show a generalized decrease at the second day of metal-exposure for both tiar and ttp, suggesting that metal accumulation induces acute stress and the inhibition of the transcription for the two studied proteins. In-situ hybridization analyses demonstrate that TIAR and TTP antisense riboprobes recognize circulating granular amoebocytes in the hemolymph, in both blood lacunae and tunic. The results obtained in this work increase our knowledge on the evolution of anti-stress proteins in metazoans and emphasize the importance of the transcription of tiar and ttp, which represents an efficient physiological response allowing organisms to survive in the environment under stress conditions.
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Affiliation(s)
- Drago Laura
- Department of Biology, University of Padova, Via Ugo Bassi 58/B, 35131 Padova, Italy
| | - Peronato Anna
- Department of Biology, University of Padova, Via Ugo Bassi 58/B, 35131 Padova, Italy
| | - Franchi Nicola
- Department of Biology, University of Padova, Via Ugo Bassi 58/B, 35131 Padova, Italy
| | - Ballarin Loriano
- Department of Biology, University of Padova, Via Ugo Bassi 58/B, 35131 Padova, Italy.
| | - Bakiu Rigers
- Department of Aquaculture and Fisheries, Agricultural University of Tirana, Tirana, Albania
| | - Santovito Gianfranco
- Department of Biology, University of Padova, Via Ugo Bassi 58/B, 35131 Padova, Italy
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5
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Chatzidimitriou E, Bisaccia P, Corrà F, Bonato M, Irato P, Manuto L, Toppo S, Bakiu R, Santovito G. Copper/Zinc Superoxide Dismutase from the Crocodile Icefish Chionodraco hamatus: Antioxidant Defense at Constant Sub-Zero Temperature. Antioxidants (Basel) 2020; 9:antiox9040325. [PMID: 32316382 PMCID: PMC7222407 DOI: 10.3390/antiox9040325] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2020] [Revised: 04/13/2020] [Accepted: 04/14/2020] [Indexed: 12/11/2022] Open
Abstract
In the present study, we describe the purification and molecular characterization of Cu,Zn superoxide dismutase (SOD) from Chionodraco hamatus, an Antarctic teleost widely distributed in many areas of the Ross Sea that plays a pivotal role in the Antarctic food chain. The primary sequence was obtained using biochemical and molecular biology approaches and compared with Cu,Zn SODs from other organisms. Multiple sequence alignment using the amino acid sequence revealed that Cu,Zn SOD showed considerable sequence similarity with its orthologues from various vertebrate species, but also some specific substitutions directly linked to cold adaptation. Phylogenetic analyses presented the monophyletic status of Antartic Teleostei among the Perciformes, confirming the erratic differentiation of these proteins and concurring with the theory of the "unclock-like" behavior of Cu,Zn SOD evolution. Expression of C. hamatus Cu,Zn SOD at both the mRNA and protein levels were analyzed in various tissues, highlighting the regulation of gene expression related to environmental stress conditions and also animal physiology. The data presented are the first on the antioxidant enzymes of a fish belonging to the Channichthyidae family and represent an important starting point in understanding the antioxidant systems of these organisms that are subject to constant risk of oxidative stress.
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Affiliation(s)
- Evangelia Chatzidimitriou
- Institute of Natural Resource Sciences, ZHAW Zurich University of Applied Sciences, 8820 Wädenswil, Switzerland;
| | - Paola Bisaccia
- Department of Biology, University of Padova, 35131 Padova, Italy; (P.B.); (F.C.); (M.B.); (P.I.)
| | - Francesca Corrà
- Department of Biology, University of Padova, 35131 Padova, Italy; (P.B.); (F.C.); (M.B.); (P.I.)
| | - Marco Bonato
- Department of Biology, University of Padova, 35131 Padova, Italy; (P.B.); (F.C.); (M.B.); (P.I.)
| | - Paola Irato
- Department of Biology, University of Padova, 35131 Padova, Italy; (P.B.); (F.C.); (M.B.); (P.I.)
| | - Laura Manuto
- Department of Molecular Medicine, University of Padova, 35131 Padova, Italy; (L.M.); (S.T.)
| | - Stefano Toppo
- Department of Molecular Medicine, University of Padova, 35131 Padova, Italy; (L.M.); (S.T.)
- CRIBI Biotech Centre, University of Padova, 35131 Padova, Italy
| | - Rigers Bakiu
- Department of Aquaculture and Fisheries, Agricultural University of Tirana, 1000 Tiranë, Albania;
| | - Gianfranco Santovito
- Department of Biology, University of Padova, 35131 Padova, Italy; (P.B.); (F.C.); (M.B.); (P.I.)
- Correspondence:
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Resistance to 6-Methylpurine is Conferred by Defective Adenine Phosphoribosyltransferase in Tetrahymena. Genes (Basel) 2018; 9:genes9040179. [PMID: 29570682 PMCID: PMC5924521 DOI: 10.3390/genes9040179] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2018] [Revised: 03/16/2018] [Accepted: 03/20/2018] [Indexed: 02/05/2023] Open
Abstract
6-methylpurine (6mp) is a toxic analog of adenine that inhibits RNA and protein synthesis and interferes with adenine salvage mediated by adenine phosphoribosyltransferase (APRTase). Mutants of the ciliated protist Tetrahymena thermophila that are resistant to 6mp were isolated in 1974, but the mechanism of resistance has remained unknown. To investigate 6mp resistance in T. thermophila, we created 6mp-resistant strains and identified a mutation in the APRTase genomic locus (APRT1) that is responsible for 6mp resistance. While overexpression of the mutated APRT1 allele in 6mp-sensitive cells did not confer resistance to 6mp, reduced wild-type APRT1 expression resulted in a significant decrease in sensitivity to 6mp. Knocking out or reducing the expression of APRT1 by RNA interference (RNAi) did not affect robust cell growth, which indicates that adenine salvage is redundant or that de novo synthesis pathways provide sufficient adenosine monophosphate for viability. We also explored whether 6mp resistance could be used as a novel inducible selection marker by generating 6mp- and paromomycin-resistant double mutants. While 6mp- and paromomycin-resistant double mutants did express fluorescent proteins in an RNAi-based system, the system requires optimization before 6mp resistance can be used as an effective inducible selection marker.
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Howard-Till R, Loidl J. Condensins promote chromosome individualization and segregation during mitosis, meiosis, and amitosis in Tetrahymena thermophila. Mol Biol Cell 2017; 29:466-478. [PMID: 29237819 PMCID: PMC6014175 DOI: 10.1091/mbc.e17-07-0451] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2017] [Revised: 11/27/2017] [Accepted: 12/07/2017] [Indexed: 11/11/2022] Open
Abstract
Condensin is a protein complex with diverse functions in chromatin packaging and chromosome condensation and segregation. We studied condensin in the evolutionarily distant protist model Tetrahymena, which features noncanonical nuclear organization and divisions. In Tetrahymena, the germline and soma are partitioned into two different nuclei within a single cell. Consistent with their functional specializations in sexual reproduction and gene expression, condensins of the germline nucleus and the polyploid somatic nucleus are composed of different subunits. Mitosis and meiosis of the germline nucleus and amitotic division of the somatic nucleus are all dependent on condensins. In condensin-depleted cells, a chromosome condensation defect was most striking at meiotic metaphase, when Tetrahymena chromosomes are normally most densely packaged. Live imaging of meiotic divisions in condensin-depleted cells showed repeated nuclear stretching and contraction as the chromosomes failed to separate. Condensin depletion also fundamentally altered chromosome arrangement in the polyploid somatic nucleus: multiple copies of homologous chromosomes tended to cluster, consistent with a previous model of condensin suppressing default somatic pairing. We propose that failure to form discrete chromosome territories is the common cause of the defects observed in the absence of condensins.
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Affiliation(s)
- Rachel Howard-Till
- Department of Chromosome Biology, University of Vienna, 1190 Vienna, Austria
| | - Josef Loidl
- Department of Chromosome Biology, University of Vienna, 1190 Vienna, Austria
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Akematsu T, Fukuda Y, Garg J, Fillingham JS, Pearlman RE, Loidl J. Post-meiotic DNA double-strand breaks occur in Tetrahymena, and require Topoisomerase II and Spo11. eLife 2017. [PMID: 28621664 PMCID: PMC5482572 DOI: 10.7554/elife.26176] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Abstract
Based on observations of markers for DNA lesions, such as phosphorylated histone H2AX (γH2AX) and open DNA ends, it has been suggested that post-meiotic DNA double-strand breaks (PM-DSBs) enable chromatin remodeling during animal spermiogenesis. However, the existence of PM-DSBs is unconfirmed, and the mechanism responsible for their formation is unclear. Here, we report the first direct observation of programmed PM-DSBs via the electrophoretic separation of DSB-generated DNA fragments in the ciliate Tetrahymena thermophila. These PM-DSBs are accompanied by switching from a heterochromatic to euchromatic chromatin structure in the haploid pronucleus. Both a topoisomerase II paralog with exclusive pronuclear expression and Spo11 are prerequisites for PM-DSB induction. Reduced PM-DSB induction blocks euchromatin formation, characterized by histone H3K56 acetylation, leading to a failure in gametic nuclei production. We propose that PM-DSBs are responsible for histone replacement during the reprogramming of generative to undifferentiated progeny nuclei. DOI:http://dx.doi.org/10.7554/eLife.26176.001
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Affiliation(s)
- Takahiko Akematsu
- Department of Chromosome Biology, University of Vienna, Vienna, Austria
| | - Yasuhiro Fukuda
- Department of Biodiversity Science, Tohoku University, Oosaki, Japan.,Division of Biological Resource Science, Tohoku University, Oosaki, Japan.,Graduate School of Agricultural Science, Tohoku University, Oosaki, Japan
| | - Jyoti Garg
- Department of Biology, York University, Toronto, Canada
| | | | | | - Josef Loidl
- Department of Chromosome Biology, University of Vienna, Vienna, Austria
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Tetrahymena as a Unicellular Model Eukaryote: Genetic and Genomic Tools. Genetics 2017; 203:649-65. [PMID: 27270699 DOI: 10.1534/genetics.114.169748] [Citation(s) in RCA: 71] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2016] [Accepted: 04/08/2016] [Indexed: 12/12/2022] Open
Abstract
Tetrahymena thermophila is a ciliate model organism whose study has led to important discoveries and insights into both conserved and divergent biological processes. In this review, we describe the tools for the use of Tetrahymena as a model eukaryote, including an overview of its life cycle, orientation to its evolutionary roots, and methodological approaches to forward and reverse genetics. Recent genomic tools have expanded Tetrahymena's utility as a genetic model system. With the unique advantages that Tetrahymena provide, we argue that it will continue to be a model organism of choice.
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Wall KP, Pagratis M, Armstrong G, Balsbaugh JL, Verbeke E, Pearson CG, Hough LE. Molecular Determinants of Tubulin's C-Terminal Tail Conformational Ensemble. ACS Chem Biol 2016; 11:2981-2990. [PMID: 27541566 DOI: 10.1021/acschembio.6b00507] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Tubulin is important for a wide variety of cellular processes including cell division, ciliogenesis, and intracellular trafficking. To perform these diverse functions, tubulin is regulated by post-translational modifications (PTM), primarily at the C-terminal tails of both the α- and β-tubulin heterodimer subunits. The tubulin C-terminal tails are disordered segments that are predicted to extend from the ordered tubulin body and may regulate both intrinsic properties of microtubules and the binding of microtubule associated proteins (MAP). It is not understood how either interactions with the ordered tubulin body or PTM affect tubulin's C-terminal tails. To probe these questions, we developed a method to isotopically label tubulin for C-terminal tail structural studies by NMR. The conformational changes of the tubulin tails as a result of both proximity to the ordered tubulin body and modification by mono- and polyglycine PTM were determined. The C-terminal tails of the tubulin dimer are fully disordered and, in contrast with prior simulation predictions, exhibit a propensity for β-sheet conformations. The C-terminal tails display significant chemical shift differences as compared to isolated peptides of the same sequence, indicating that the tubulin C-terminal tails interact with the ordered tubulin body. Although mono- and polyglycylation affect the chemical shift of adjacent residues, the conformation of the C-terminal tail appears insensitive to the length of polyglycine chains. Our studies provide important insights into how the essential disordered domains of tubulin function.
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Affiliation(s)
| | - Maria Pagratis
- University of Colorado, Boulder, Colorado, United States
| | | | | | - Eric Verbeke
- University of Colorado, Boulder, Colorado, United States
| | - Chad G. Pearson
- University of Colorado, Anschutz Medical Campus, Colorado, United States
| | - Loren E. Hough
- University of Colorado, Boulder, Colorado, United States
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de Francisco P, Melgar LM, Díaz S, Martín-González A, Gutiérrez JC. The Tetrahymena metallothionein gene family: twenty-one new cDNAs, molecular characterization, phylogenetic study and comparative analysis of the gene expression under different abiotic stressors. BMC Genomics 2016; 17:346. [PMID: 27165301 PMCID: PMC4862169 DOI: 10.1186/s12864-016-2658-6] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2015] [Accepted: 04/22/2016] [Indexed: 01/22/2023] Open
Abstract
Background Ciliate metallothioneins (MTs) are included in family 7 of the MT superfamily. This family has been divided into two main subfamilies: 7a or CdMTs and 7b or CuMTs. All ciliate MTs reported have been isolated from different Tetrahymena species and present unique features with regard to standard MTs. Likewise, an expression analysis has been carried out on some of MT genes under metal stress, corroborating their classification into two subfamilies. Results We isolated 21 new cDNAs from different Tetrahymena species to obtain a wider view of the biodiversity of these conserved genes. Structural analysis (cysteine patterns) and an updated phylogenetic study both corroborated the previous classification into two subfamilies. A new CuMT from a Tetrahymena-related species Ichthyophthirius multifiliis was also included in this general analysis. We detected a certain tendency towards the presentation of a CdMT tri-modular structure in Borealis group species with respect to Australis group. We report for the first time a semi-complete paralog duplication of a CdMT gene originating a new CdMT gene isoform in T. malaccensis. An asymmetry of the codon usage for glutamine residues was detected between Cd- and CuMTs, and the phylogenetic implications are discussed. A comparative gene expression analysis of several MT genes by qRT-PCR revealed differential behavior among them under different abiotic stressors in the same Tetrahymena species. Conclusions The Tetrahymena metallothionein family represents a quite conserved protein structure group with unique features with respect to standard MTs. Both Cd- and CuMT subfamilies present very defined and differentiated characteristics at several levels: cysteine patterns, modular structure, glutamine codon usage and gene expression under metal stress, among others. Gene duplication through evolution seems to be the major genetic mechanism for creating new MT gene isoforms and increasing their functional diversity. Electronic supplementary material The online version of this article (doi:10.1186/s12864-016-2658-6) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Patricia de Francisco
- Departamento Microbiología-III, Facultad de Biología. C/José Antonio Novais, 12, Universidad Complutense de Madrid (UCM), 28040, Madrid, Spain
| | - Laura María Melgar
- Universidad Castilla-La Mancha, Campus Tecnológico de la fábrica de armas, Edificio Sabatini. Av. Carlos III, s/n. 45071, Toledo, Spain
| | - Silvia Díaz
- Departamento Microbiología-III, Facultad de Biología. C/José Antonio Novais, 12, Universidad Complutense de Madrid (UCM), 28040, Madrid, Spain
| | - Ana Martín-González
- Departamento Microbiología-III, Facultad de Biología. C/José Antonio Novais, 12, Universidad Complutense de Madrid (UCM), 28040, Madrid, Spain
| | - Juan Carlos Gutiérrez
- Departamento Microbiología-III, Facultad de Biología. C/José Antonio Novais, 12, Universidad Complutense de Madrid (UCM), 28040, Madrid, Spain.
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12
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Espart A, Marín M, Gil-Moreno S, Palacios Ò, Amaro F, Martín-González A, Gutiérrez JC, Capdevila M, Atrian S. Hints for metal-preference protein sequence determinants: different metal binding features of the five tetrahymena thermophila metallothioneins. Int J Biol Sci 2015; 11:456-71. [PMID: 25798065 PMCID: PMC4366644 DOI: 10.7150/ijbs.11060] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2014] [Accepted: 01/21/2015] [Indexed: 11/12/2022] Open
Abstract
The metal binding preference of metallothioneins (MTs) groups them in two extreme subsets, the Zn/Cd- and the Cu-thioneins. Ciliates harbor the largest MT gene/protein family reported so far, including 5 paralogs that exhibit relatively low sequence similarity, excepting MTT2 and MTT4. In Tetrahymena thermophila, three MTs (MTT1, MTT3 and MTT5) were considered Cd-thioneins and two (MTT2 and MTT4) Cu-thioneins, according to gene expression inducibility and phylogenetic analysis. In this study, the metal-binding abilities of the five MTT proteins were characterized, to obtain information about the folding and stability of their cognate- and non-cognate metal complexes, and to characterize the T. thermophila MT system at protein level. Hence, the five MTTs were recombinantly synthesized as Zn2+-, Cd2+- or Cu+-complexes, which were analyzed by electrospray mass spectrometry (ESI-MS), circular dichroism (CD), and UV-vis spectrophotometry. Among the Cd-thioneins, MTT1 and MTT5 were optimal for Cd2+ coordination, yielding unique Cd17- and Cd8- complexes, respectively. When binding Zn2+, they rendered a mixture of Zn-species. Only MTT5 was capable to coordinate Cu+, although yielding heteronuclear Zn-, Cu-species or highly unstable Cu-homometallic species. MTT3 exhibited poor binding abilities both for Cd2+ and for Cu+, and although not optimally, it yielded the best result when coordinating Zn2+. The two Cu-thioneins, MTT2 and MTT4 isoforms formed homometallic Cu-complexes (major Cu20-MTT) upon synthesis in Cu-supplemented hosts. Contrarily, they were unable to fold into stable Cd-complexes, while Zn-MTT species were only recovered for MTT4 (major Zn10-MTT4). Thus, the metal binding preferences of the five T. thermophila MTs correlate well with their previous classification as Cd- and Cu-thioneins, and globally, they can be classified from Zn/Cd- to Cu-thioneins according to the gradation: MTT1>MTT5>MTT3>MTT4>MTT2. The main mechanisms underlying the evolution and specialization of the MTT metal binding preferences may have been internal tandem duplications, presence of doublet and triplet Cys patterns in Zn/Cd-thioneins, and optimization of site specific amino acid determinants (Lys for Zn/Cd- and Asn for Cu-coordination).
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Affiliation(s)
- Anna Espart
- 1. Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, 08028-Barcelona, Spain
| | - Maribel Marín
- 2. Departament de Química, Facultat de Ciències, Universitat Autònoma de Barcelona, 08193-Cerdanyola del Vallès (Barcelona), Spain
| | - Selene Gil-Moreno
- 2. Departament de Química, Facultat de Ciències, Universitat Autònoma de Barcelona, 08193-Cerdanyola del Vallès (Barcelona), Spain
| | - Òscar Palacios
- 2. Departament de Química, Facultat de Ciències, Universitat Autònoma de Barcelona, 08193-Cerdanyola del Vallès (Barcelona), Spain
| | - Francisco Amaro
- 3. Departamento de Microbiología-III, Facultad de Biología, Universidad Complutense, 28040-Madrid, Spain
| | - Ana Martín-González
- 3. Departamento de Microbiología-III, Facultad de Biología, Universidad Complutense, 28040-Madrid, Spain
| | - Juan C Gutiérrez
- 3. Departamento de Microbiología-III, Facultad de Biología, Universidad Complutense, 28040-Madrid, Spain
| | - Mercè Capdevila
- 2. Departament de Química, Facultat de Ciències, Universitat Autònoma de Barcelona, 08193-Cerdanyola del Vallès (Barcelona), Spain
| | - Sílvia Atrian
- 1. Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, 08028-Barcelona, Spain
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Amaro F, Turkewitz AP, Martín-González A, Gutiérrez JC. Functional GFP-metallothionein fusion protein from Tetrahymena thermophila: a potential whole-cell biosensor for monitoring heavy metal pollution and a cell model to study metallothionein overproduction effects. Biometals 2014; 27:195-205. [PMID: 24430977 PMCID: PMC4707044 DOI: 10.1007/s10534-014-9704-0] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2013] [Accepted: 12/31/2013] [Indexed: 11/26/2022]
Abstract
The significance of metal(oid)s as environmental pollutants has made them a priority in ecotoxicology, with the aim of minimizing exposure to animals or humans. Therefore, it is necessary to develop sensitive and inexpensive methods that can efficiently detect and monitor these pollutants in the environment. Conventional analytical techniques suffer from the disadvantages of high cost and complexity. Alternatively, prokaryotic or eukaryotic whole-cell biosensors (WCB) are one of the newest molecular tools employed in environmental monitoring that use the cell as an integrated reporter incorporating a reporter gene fused to a heavy metal responsive promoter. In the present paper, we report results from expressing, in the ciliate Tetrahymena thermophila, constructs consisting of the reporter gfp gene fused to the complete MTT1 or MTT5 protein coding regions under the transcriptional control of the MTT1 metallothionein promoter, which plays a critical role in heavy metal stress in this ciliate. When exposed to Cd(2+), such cells overexpress both the GFP reporter transgene and the linked metallothionein gene. We report that, for the GFPMTT5 strain, this metallothionein overexpression results in marked resistance to cadmium toxicity (24 h LC50 ~15 μM of Cd(2+)), compared to wild type cells (24 h LC50 ~1.73 μM of Cd(2+)). These results provide the first experimental evidence that ciliate metallothioneins, like in other organisms, function to protect the cell against toxic metal ions. Because these strains may have novel advantages as WCBs, we have compared their properties to those of other previously reported Tetrahymena WCBs.
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Affiliation(s)
- Francisco Amaro
- Departamento de Microbiología-III, Facultad de Biología, C/. José Antonio Novais 12, Universidad Complutense (UCM), 28040 Madrid, Spain
| | - Aaron P. Turkewitz
- Department of Molecular Genetics and Cell Biology, University of Chicago, Cummings Life Science Center, 920 East 58th Street, Chicago, IL. 60637, USA
| | - Ana Martín-González
- Departamento de Microbiología-III, Facultad de Biología, C/. José Antonio Novais 12, Universidad Complutense (UCM), 28040 Madrid, Spain
| | - Juan Carlos Gutiérrez
- Departamento de Microbiología-III, Facultad de Biología, C/. José Antonio Novais 12, Universidad Complutense (UCM), 28040 Madrid, Spain
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Vogt A, Mochizuki K. A domesticated PiggyBac transposase interacts with heterochromatin and catalyzes reproducible DNA elimination in Tetrahymena. PLoS Genet 2013; 9:e1004032. [PMID: 24348275 PMCID: PMC3861120 DOI: 10.1371/journal.pgen.1004032] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2013] [Accepted: 10/31/2013] [Indexed: 12/20/2022] Open
Abstract
The somatic genome of the ciliated protist Tetrahymena undergoes DNA elimination of defined sequences called internal eliminated sequences (IESs), which account for ~30% of the germline genome. During DNA elimination, IES regions are heterochromatinized and assembled into heterochromatin bodies in the developing somatic nucleus. The domesticated piggyBac transposase Tpb2p is essential for the formation of heterochromatin bodies and DNA elimination. In this study, we demonstrate that the activities of Tpb2p involved in forming heterochromatin bodies and executing DNA elimination are genetically separable. The cysteine-rich domain of Tpb2p, which interacts with the heterochromatin-specific histone modifications, is necessary for both heterochromatin body formation and DNA elimination, whereas the endonuclease activity of Tpb2p is only necessary for DNA elimination. Furthermore, we demonstrate that the endonuclease activity of Tpb2p in vitro and the endonuclease activity that executes DNA elimination in vivo have similar substrate sequence preferences. These results strongly indicate that Tpb2p is the endonuclease that directly catalyzes the excision of IESs and that the boundaries of IESs are at least partially determined by the combination of Tpb2p-heterochromatin interaction and relaxed sequence preference of the endonuclease activity of Tpb2p.
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Affiliation(s)
- Alexander Vogt
- Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA) Vienna, Austria
| | - Kazufumi Mochizuki
- Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA) Vienna, Austria
- * E-mail:
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A synthetic cadmium metallothionein gene (PMCd1syn) of Paramecium species: expression, purification and characteristics of metallothionein protein. Mol Biol Rep 2012; 40:983-97. [DOI: 10.1007/s11033-012-2140-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2012] [Accepted: 10/03/2012] [Indexed: 10/27/2022]
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16
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Winey M, Stemm-Wolf AJ, Giddings TH, Pearson CG. Cytological analysis of Tetrahymena thermophila. Methods Cell Biol 2012; 109:357-78. [PMID: 22444152 DOI: 10.1016/b978-0-12-385967-9.00013-x] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Since their first detection in pond water, large ciliates such as Tetrahymena thermophila, have captivated school children and scientists alike with the elegance of their swimming and the beauty of their cortical organization. Indeed, cytology - simply looking at cells - is an important component of most areas of study in cell biology and is particularly intriguing in the large, complex Tetrahymena cell. Cytological analysis of Tetrahymena is critical for the study of the microtubule cytoskeleton, membrane trafficking, complex nuclear movements and interactions, and the cellular remodeling during conjugation, to name a few topics. We briefly review previously reported cytological techniques for both light and electron microscopy, and point the reader to resources to learn about those protocols. We go on to present new and emerging technologies for the study of these marvelous cells. These include the use of fluorescent-protein tagging to localize cellular components in live cells, as well as for tracking the dynamic behavior of proteins using pulse labeling and fluorescence recovery after photobleaching. For electron microscopy, cellular and antigenic preservation has been improved with the use of cryofixation and freeze-substitution. The technologies described here advance Tetrahymena cell biology to the cutting-edge of cytological analysis.
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Affiliation(s)
- Mark Winey
- MCD Biology, University of Colorado at Boulder, 347 UCB, Boulder, Colorado 80309-0347, USA
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Ciliate metallothioneins: unique microbial eukaryotic heavy-metal-binder molecules. J Biol Inorg Chem 2011; 16:1025-34. [DOI: 10.1007/s00775-011-0820-9] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2011] [Accepted: 07/11/2011] [Indexed: 11/27/2022]
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18
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Wang Q, Xu J, Chai B, Liang A, Wang W. Functional comparison of metallothioneins MTT1 and MTT2 from Tetrahymena thermophila. Arch Biochem Biophys 2011; 509:170-6. [DOI: 10.1016/j.abb.2011.02.015] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2011] [Revised: 02/11/2011] [Accepted: 02/16/2011] [Indexed: 11/30/2022]
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Amaro F, Turkewitz AP, Martín-González A, Gutiérrez JC. Whole-cell biosensors for detection of heavy metal ions in environmental samples based on metallothionein promoters from Tetrahymena thermophila. Microb Biotechnol 2011; 4:513-22. [PMID: 21366892 PMCID: PMC3815263 DOI: 10.1111/j.1751-7915.2011.00252.x] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Abstract
Heavy metals are among the most serious pollutants, and thus there is a need to develop sensitive and rapid biomonitoring methods for heavy metals in the environment. Critical parameters such as bioavailability, toxicity and genotoxicity cannot be tested using chemical analysis, but only can be assayed using living cells. A whole‐cell biosensor uses the whole cell as a single reporter incorporating both bioreceptor and transducer elements. In the present paper, we report results with two gene constructs using the Tetrahymena thermophila MTT1 and MTT5 metallothionein promoters linked with the eukaryotic luciferase gene as a reporter. This is the first report of a ciliated protozoan used as a heavy metal whole‐cell biosensor. T. thermophila transformed strains were created as heavy metal whole‐cell biosensors, and turn on bioassays were designed to detect, in about 2 h, the bioavailable heavy metals in polluted soil or aquatic samples. Validation of these whole‐cell biosensors was carried out using both artificial and natural samples, including methods for detecting false positives and negatives. Comparison with other published cell biosensors indicates that the Tetrahymena metallothionein promoter‐based biosensors appear to be the most sensitive eukaryotic metal biosensors and compare favourably with some prokaryotic biosensors as well.
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Affiliation(s)
- Francisco Amaro
- Departamento de Microbiología-III, Facultad de Biología, C/. José Antonio Novais 2, Universidad Complutense, Madrid, Spain
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Chaudhry R, Shakoori AR. Isolation and characterization of a novel copper-inducible metallothionein gene of a ciliate, Tetrahymena tropicalis lahorensis. J Cell Biochem 2010; 110:630-44. [PMID: 20512924 DOI: 10.1002/jcb.22573] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
The two isoforms of copper metallothionein (CuMT) gene of a copper resistant ciliate, Tetrahymena tropicalis lahorensis (Ttl), have been isolated and characterized. The molecular cloning and nucleotide sequencing of cDNAs coding for the two CuMT isoforms revealed that TtlCuMT1 gene has 300, while TtlCuMT2 has 327 nucleotides, both with ATG as the initiation codon and TGA as the translational termination codon. TAG codes for glutamine in TtlCuMT2 gene which is peculiar to Tetrahymena. The deduced or translated TtlCuMT1 and TtlCuMT2 peptide sequences contain 100 and 108 amino acid residues including 28 and 32 cysteine residues, respectively. The amino acid sequences of TtlCuMT1 and TtlCuMT2 have special features of two and three CXCXXCXCXXCXC intragenic tandem repeats with a conserved structural pattern of cysteine, respectively. The predicted tertiary structures of these two isoforms indicate two domains. Domain I and the initial part of domain II showed >98% homology with other Tetrahymena CuMT. On the basis of the differences in the domain II, the metallothionein subfamily 7b can be divided into two groups, one (TtlCuMT1) comprising >100 amino acids and the other (TtlCuMT2) comprising <100 amino acids. This is a novel finding of the present study as no such report on this type of classification exists at the moment. TtlCuMT1 has 95%, while TtlCuMT2 has 97% resemblance with the previously reported CuMT genes of Tetrahymena spp. SDS-PAGE analysis using fluorescent probe as well as coomassie brilliant blue staining also confirmed the presence of metallothionein.
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Affiliation(s)
- Raheela Chaudhry
- School of Biological Sciences, University of the Punjab, Quaid-i-Azam Campus, Lahore 54590, Pakistan
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Gutiérrez JC, Amaro F, Martín-González A. From heavy metal-binders to biosensors: Ciliate metallothioneins discussed. Bioessays 2009; 31:805-16. [DOI: 10.1002/bies.200900011] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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22
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Damaj R, Pomel S, Bricheux G, Coffe G, Viguès B, Ravet V, Bouchard P. Cross-study analysis of genomic data defines the ciliate multigenic epiplasmin family: strategies for functional analysis in Paramecium tetraurelia. BMC Evol Biol 2009; 9:125. [PMID: 19493334 PMCID: PMC2709106 DOI: 10.1186/1471-2148-9-125] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2008] [Accepted: 06/03/2009] [Indexed: 05/25/2023] Open
Abstract
Background The sub-membranous skeleton of the ciliate Paramecium, the epiplasm, is composed of hundreds of epiplasmic scales centered on basal bodies, and presents a complex set of proteins, epiplasmins, which belong to a multigenic family. The repeated duplications observed in the P. tetraurelia genome present an interesting model of the organization and evolution of a multigenic family within a single cell. Results To study this multigenic family, we used phylogenetic, structural, and analytical transcriptional approaches. The phylogenetic method defines 5 groups of epiplasmins in the multigenic family. A refined analysis by Hydrophobic Cluster Analysis (HCA) identifies structural characteristics of 51 epiplasmins, defining five separate groups, and three classes. Depending on the sequential arrangement of their structural domains, the epiplasmins are defined as symmetric, asymmetric or atypical. The EST data aid in this classification, in the identification of putative regulating sequences such as TATA or CAAT boxes. When specific RNAi experiments were conducted using sequences from either symmetric or asymmetric classes, phenotypes were drastic. Local effects show either disrupted or ill-shaped epiplasmic scales. In either case, this results in aborted cell division. Using structural features, we show that 4 epiplasmins are also present in another ciliate, Tetrahymena thermophila. Their affiliation with the distinctive structural groups of Paramecium epiplasmins demonstrates an interspecific multigenic family. Conclusion The epiplasmin multigenic family illustrates the history of genomic duplication in Paramecium. This study provides a framework which can guide functional analysis of epiplasmins, the major components of the membrane skeleton in ciliates. We show that this set of proteins handles an important developmental information in Paramecium since maintenance of epiplasm organization is crucial for cell morphogenesis.
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Affiliation(s)
- Raghida Damaj
- Laboratoire Microorganismes: Génome et Environnement (ex, LBP) UMR CNRS 6023, Université Blaise Pascal, 63177, Aubière cedex, France.
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Amaro F, del Pilar de Lucas M, Martín-González A, Gutiérrez JC. Two new members of the Tetrahymena multi-stress-inducible metallothionein family: characterization and expression analysis of T. rostrata Cd/Cu metallothionein genes. Gene 2008; 423:85-91. [PMID: 18675326 DOI: 10.1016/j.gene.2008.07.002] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2008] [Revised: 06/17/2008] [Accepted: 07/03/2008] [Indexed: 11/19/2022]
Abstract
We report the cloning and characterization of two new metallothionein (MT) genes (TrosMTT1 and TrosMTT2), isolated as cDNAs, from the ciliated protozoa Tetrahymena rostrata. The TrosMTT1 inferred protein has been identified as a CdMT and included into the 7a subfamily of Tetrahymena MTs, while TrosMTT2 has been identified as a CuMT (including it into 7b subfamily), due to its similarity to TpigMT-2 and its significant induction by copper. TrosMTT1 protein sequence reveals a remarkably regular and hierarchical modular organization, as it is known for other Tetrahymena CdMTs, showing a bi-modular structure. TrosMTT2 presents a structural organization based on CKCX(2-5)CKC repeats, like it occurs in other Tetrahymena CuMTs, indicating that an evolutionary history based on intra-gene duplications might be also possible. Both are also multi-stress-inducible genes because they are induced by other heavy metals and stressors, as it has been shown by quantitative real-time RT-PCR. It is the first time that the gene expression of a putative Tetrahymena CuMT is analyzed by quantitative PCR, confirming it as a CuMT. These two new Tetrahymena MTs complete, at present, the actual view of this protein superfamily, and corroborate the unique features of ciliate MTs. Furthermore, both, a comparative analysis of relative gene expression values obtained by quantitative RT-PCR on other Tetrahymena MT genes and an analysis of the different Tetrahymena MTs based on the different Cys clusters of these proteins are carried out, which show an update view of Tetrahymena MT gene family.
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Affiliation(s)
- Francisco Amaro
- Departamento de Microbiología-III, Facultad de Biología, C/, José Antonio Novais, 2, Universidad Complutense (UCM), 28040 Madrid, Spain
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